PeakID (cmd=annotatePeaks.pl ./example/NIH3T3_prediction_example/tmp3/anchor2.tmp mm10)	Chr	Start	End	Strand	Peak Score	Focus Ratio/Region Size	Annotation	Detailed Annotation	Distance to TSS	Nearest PromoterID	Entrez ID	Nearest Unigene	Nearest Refseq	Nearest Ensembl	Gene Name	Gene Alias	Gene Description	Gene Type
598	chr11	103826442	103830506	+	0	NA	exon (NM_008740, exon 18 of 21)	exon (NM_008740, exon 18 of 21)	54299	NM_009521	22415	Mm.159091	NM_009521	ENSMUSG00000000125	Wnt3	Int-4|Wnt-3	wingless-type MMTV integration site family, member 3	protein-coding
257	chr19	42044084	42046618	+	0	NA	promoter-TSS (NM_026152)	promoter-TSS (NM_026152)	-500	NM_026152	67432	Mm.24196	NM_026152	ENSMUSG00000025176	Hoga1	0610010D20Rik|Dhdpsl|Npl2	4-hydroxy-2-oxoglutarate aldolase 1	protein-coding
940	chr8	125896215	125899033	+	0	NA	promoter-TSS (NR_155422)	promoter-TSS (NR_155422)	-290	NR_155422	102632990	Mm.429446	NR_155422		A730098A19Rik	-	RIKEN cDNA A730098A19 gene	ncRNA
104	chr15	36102423	36105170	+	0	NA	exon (NM_001195748, exon 6 of 28)	exon (NM_001195748, exon 6 of 28)	36604	NM_001195748	626596	Mm.321798	NM_001195748	ENSMUSG00000037627	Rgs22	-	regulator of G-protein signalling 22	protein-coding
1037	chr16	10540210	10547389	+	0	NA	promoter-TSS (NM_021428)	promoter-TSS (NM_021428)	-745	NM_021428	58239	Mm.353006	NM_021428	ENSMUSG00000038055	Dexi	1810029J14Rik|AI836170|AW413143|D16Bwg0586e|Myle	dexamethasone-induced transcript	protein-coding
153	chr11	86543885	86546202	+	0	NA	promoter-TSS (NM_001199047)	promoter-TSS (NM_001199047)	52	NM_019756	56427	Mm.383207	NM_019756	ENSMUSG00000020513	Tubd1	4930550G19Rik|Tubd	tubulin, delta 1	protein-coding
1063	chr17	37224529	37227100	+	0	NA	exon (NM_146514, exon 1 of 1)	exon (NM_146514, exon 1 of 1)	687	NM_146514	258507	Mm.377543	NM_146514	ENSMUSG00000064121	Olfr96	MOR121-1	olfactory receptor 96	protein-coding
895	chr5	136566925	136568564	+	0	NA	promoter-TSS (NM_009986)	promoter-TSS (NM_009986)	-254	NM_001291234	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding
668	chr5	136194430	136205083	+	0	NA	promoter-TSS (NM_025774)	promoter-TSS (NM_025774)	-802	NM_025774	66801	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding
974	chr3	89181136	89183897	+	0	NA	promoter-TSS (NM_001014995)	promoter-TSS (NM_001014995)	-627	NM_001014995	68521	Mm.274708	NM_001014995	ENSMUSG00000032657	Fam189b	1110013L07Rik	family with sequence similarity 189, member B	protein-coding
79	chr16	55933303	55936430	+	0	NA	promoter-TSS (NM_028815)	promoter-TSS (NM_028815)	-18	NM_001159366	74201	Mm.178427	NM_028815	ENSMUSG00000022604	Cep97	2810403B08Rik|4932439K18Rik|AA437768|E130116N02Rik|Lrriq2	centrosomal protein 97	protein-coding
308	chr2	156861444	156863850	+	0	NA	promoter-TSS (NM_026124)	promoter-TSS (NM_026124)	298	NR_015591	74487	Mm.490465	NR_015591	ENSMUSG00000085741	5430405H02Rik	2610307N17Rik	RIKEN cDNA 5430405H02 gene	ncRNA
568	chr11	118072277	118074922	+	0	NA	exon (NM_001167746, exon 47 of 81)	exon (NM_001167746, exon 47 of 81)	55620	NM_001167746	69926	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding
537	chr12	103896263	103901819	+	0	NA	exon (NM_009245, exon 2 of 5)	exon (NM_009245, exon 2 of 5)	5909	NM_009245	20702	Mm.439692	NM_009245	ENSMUSG00000079015	Serpina1c	Pi3|Pi6|Skalp|Spi1-3|Spi1-6|Wap3	serine (or cysteine) peptidase inhibitor, clade A, member 1C	protein-coding
861	chr14	15438729	15440623	+	0	NA	promoter-TSS (NM_146052)	promoter-TSS (NM_146052)	-689	NM_146052	218763	Mm.138039	NM_146052	ENSMUSG00000045201	Lrrc3b	BC019794|LRP15	leucine rich repeat containing 3B	protein-coding
522	chr3	138413332	138416623	+	0	NA	promoter-TSS (NM_011996)	promoter-TSS (NM_011996)	-520	NM_011996	26876	Mm.158750	NM_011996	ENSMUSG00000037797	Adh4	Adh2	alcohol dehydrogenase 4 (class II), pi polypeptide	protein-coding
194	chr3	138123533	138126691	+	0	NA	exon (NM_008642, exon 2 of 18)	exon (NM_008642, exon 2 of 18)	6541	NM_008642	17777	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding
1084	chr19	31663869	31665600	+	0	NA	promoter-TSS (NM_011160)	promoter-TSS (NM_011160)	-364	NM_011160	19091	Mm.381170	NM_011160	ENSMUSG00000052920	Prkg1	AW125416|CGKI|Gm19690|Prkg1b|Prkgr1b	protein kinase, cGMP-dependent, type I	protein-coding
980	chr3	95158642	95161842	+	0	NA	promoter-TSS (NM_001272024)	promoter-TSS (NM_001272024)	-178	NM_001272024	20360	Mm.23662	NM_011351	ENSMUSG00000038777	Sema6c	Semay|mKIAA1869	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	protein-coding
463	chr5	136194430	136205083	+	0	NA	promoter-TSS (NM_025774)	promoter-TSS (NM_025774)	-802	NM_025774	66801	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding
16	chr3	129760549	129766071	+	0	NA	non-coding (NR_040589, exon 5 of 5)	non-coding (NR_040589, exon 5 of 5)	-7988	NM_010113	13645	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding
197	chr3	80686809	80689869	+	0	NA	non-coding (NR_152148, exon 18 of 18)	non-coding (NR_152148, exon 18 of 18)	114496	NM_013540	14800	Mm.220224	NM_013540	ENSMUSG00000033981	Gria2	GluA2|GluR-B|Glur-2|Glur2|gluR-K2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding
513	chr1	193104203	193105972	+	0	NA	non-coding (NR_151719, exon 12 of 12)	non-coding (NR_151719, exon 12 of 12)	25164	NM_145415	215193	Mm.173758	NM_145415	ENSMUSG00000016181	Diexf	AA408296|AW045375|Def	digestive organ expansion factor homolog (zebrafish)	protein-coding
818	chr2	154379486	154382377	+	0	NA	exon (NM_009228, exon 4 of 8)	exon (NM_009228, exon 4 of 8)	-8212	NM_025876	66971	Mm.289427	NM_025876	ENSMUSG00000027487	Cdk5rap1	2310066P17Rik	CDK5 regulatory subunit associated protein 1	protein-coding
618	chr13	54793064	54797084	+	0	NA	exon (NM_028841, exon 5 of 8)	exon (NM_028841, exon 5 of 8)	5669	NM_028841	74257	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding
86	chr15	85814962	85818572	+	0	NA	exon (NM_011105, exon 1 of 1)	exon (NM_011105, exon 1 of 1)	4966	NM_011105	18766	Mm.89965	NM_011105	ENSMUSG00000052496	Pkdrej	-	polycystin (PKD) family receptor for egg jelly	protein-coding
882	chr1	164144042	164158132	+	0	NA	promoter-TSS (NM_007976)	promoter-TSS (NM_007976)	-748	NM_007976	14067	Mm.12900	NM_007976	ENSMUSG00000026579	F5	AI173222|Cf-5|Cf5	coagulation factor V	protein-coding
774	chr3	138123533	138126691	+	0	NA	exon (NM_008642, exon 2 of 18)	exon (NM_008642, exon 2 of 18)	6541	NM_008642	17777	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding
1096	chr8	124662836	124664772	+	0	NA	promoter-TSS (NM_175149)	promoter-TSS (NM_175149)	-435	NM_175149	69551	Mm.261920	NM_175149	ENSMUSG00000031983	2310022B05Rik	-	RIKEN cDNA 2310022B05 gene	protein-coding
733	chr8	85230192	85231933	+	0	NA	exon (NM_146859, exon 1 of 1)	exon (NM_146859, exon 1 of 1)	565	NM_146859	258858	Mm.354727	NM_146859	ENSMUSG00000051952	Olfr371	MOR141-3	olfactory receptor 371	protein-coding
249	chr2	154379486	154382377	+	0	NA	exon (NM_009228, exon 4 of 8)	exon (NM_009228, exon 4 of 8)	-8212	NM_025876	66971	Mm.289427	NM_025876	ENSMUSG00000027487	Cdk5rap1	2310066P17Rik	CDK5 regulatory subunit associated protein 1	protein-coding
754	chr19	42099763	42101817	+	0	NA	exon (NM_145501, exon 2 of 9)	exon (NM_145501, exon 2 of 9)	10355	NM_145501	84095	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding
841	chr16	32734880	32737573	+	0	NA	5' UTR (NM_080457, exon 1 of 27)	5' UTR (NM_080457, exon 1 of 27)	340	NM_080457	140474	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding
926	chr9	89800411	89804190	+	0	NA	promoter-TSS (NR_029570)	promoter-TSS (NR_029570)	28	NR_029570	387179		NR_029570	ENSMUSG00000065596	Mir184	Mirn184|mir-184|mmu-mir-184	microRNA 184	ncRNA
1074	chr1	174171168	174173975	+	0	NA	promoter-TSS (NM_011465)	promoter-TSS (NM_011465)	-205	NM_011465	20739	Mm.200611	NM_011465	ENSMUSG00000026532	Spta1	AF093576|AI451697|Spna-1|Spna1|ha|ihj|nmf4|sph	spectrin alpha, erythrocytic 1	protein-coding
897	chr5	136194430	136205083	+	0	NA	promoter-TSS (NM_025774)	promoter-TSS (NM_025774)	-802	NM_025774	66801	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding
54	chr11	102145422	102147853	+	0	NA	exon (NM_145829, exon 2 of 7)	exon (NM_145829, exon 2 of 7)	1124	NM_145829	217214	Mm.31686	NM_145829	ENSMUSG00000048217	Nags	1700120E20Rik|argA	N-acetylglutamate synthase	protein-coding
781	chr3	138123533	138126691	+	0	NA	exon (NM_008642, exon 2 of 18)	exon (NM_008642, exon 2 of 18)	6541	NM_008642	17777	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding
300	chr11	79674061	79676363	+	0	NA	promoter-TSS (NR_045898)	promoter-TSS (NR_045898)	-126	NR_045898	72218	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA
201	chr3	87756763	87760181	+	0	NA	5' UTR (NM_001289601, exon 7 of 25)	5' UTR (NM_001289601, exon 7 of 25)	-9849	NM_028971	74485	Mm.474494	NM_028971	ENSMUSG00000023084	Lrrc71	4933430H15Rik	leucine rich repeat containing 71	protein-coding
825	chr12	103896263	103901819	+	0	NA	exon (NM_009245, exon 2 of 5)	exon (NM_009245, exon 2 of 5)	5909	NM_009245	20702	Mm.439692	NM_009245	ENSMUSG00000079015	Serpina1c	Pi3|Pi6|Skalp|Spi1-3|Spi1-6|Wap3	serine (or cysteine) peptidase inhibitor, clade A, member 1C	protein-coding
490	chr11	102145422	102147853	+	0	NA	exon (NM_145829, exon 2 of 7)	exon (NM_145829, exon 2 of 7)	1124	NM_145829	217214	Mm.31686	NM_145829	ENSMUSG00000048217	Nags	1700120E20Rik|argA	N-acetylglutamate synthase	protein-coding
888	chr15	99972974	99974836	+	0	NA	promoter-TSS (NR_028124)	promoter-TSS (NR_028124)	-618	NR_028124	70281	Mm.484037	NR_028124	ENSMUSG00000100084	2310068J16Rik	-	RIKEN cDNA 2310068J16 gene	ncRNA
326	chr15	97843679	97846360	+	0	NA	promoter-TSS (NM_001204279)	promoter-TSS (NM_001204279)	-517	NM_001204279	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding
1059	chr8	109774061	109781273	+	0	NA	promoter-TSS (NM_009677)	promoter-TSS (NM_009677)	-916	NM_001301211	11765	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding
508	chr11	102145422	102147853	+	0	NA	exon (NM_145829, exon 2 of 7)	exon (NM_145829, exon 2 of 7)	1124	NM_145829	217214	Mm.31686	NM_145829	ENSMUSG00000048217	Nags	1700120E20Rik|argA	N-acetylglutamate synthase	protein-coding
4	chr4	59959837	59962858	+	0	NA	promoter-TSS (NM_008648)	promoter-TSS (NM_008648)	-682	NM_008648	17843	Mm.457982	NM_008648	ENSMUSG00000041333	Mup4	Mup-4|Mup1	major urinary protein 4	protein-coding
416	chr8	85230192	85231933	+	0	NA	exon (NM_146859, exon 1 of 1)	exon (NM_146859, exon 1 of 1)	565	NM_146859	258858	Mm.354727	NM_146859	ENSMUSG00000051952	Olfr371	MOR141-3	olfactory receptor 371	protein-coding
1081	chr19	40723258	40728905	+	0	NA	exon (NM_009848, exon 6 of 10)	exon (NM_009848, exon 6 of 10)	66311	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding
1137	chr7	126862615	126865802	+	0	NA	exon (NM_172746, exon 4 of 7)	exon (NM_172746, exon 4 of 7)	2236	NM_172746	233876	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding
32	chr15	75920691	75922996	+	0	NA	promoter-TSS (NM_025412)	promoter-TSS (NM_025412)	-283	NM_025412	66194	Mm.250599	NM_025412	ENSMUSG00000022571	Pycrl	1110058B13Rik|2700073G24Rik|Pycr3	pyrroline-5-carboxylate reductase-like	protein-coding
1044	chr1	174171168	174173975	+	0	NA	promoter-TSS (NM_011465)	promoter-TSS (NM_011465)	-205	NM_011465	20739	Mm.200611	NM_011465	ENSMUSG00000026532	Spta1	AF093576|AI451697|Spna-1|Spna1|ha|ihj|nmf4|sph	spectrin alpha, erythrocytic 1	protein-coding
915	chr3	129760549	129766071	+	0	NA	non-coding (NR_040589, exon 5 of 5)	non-coding (NR_040589, exon 5 of 5)	-7988	NM_010113	13645	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding
1054	chr6	55448891	55454490	+	0	NA	promoter-TSS (NM_007407)	promoter-TSS (NM_007407)	-288	NM_007407	11517	Mm.44245	NM_007407	ENSMUSG00000029778	Adcyap1r1	2900024I10Rik|AI846590|PAC1|PAC1R|PACAP1-R	adenylate cyclase activating polypeptide 1 receptor 1	protein-coding
1126	chr11	79674061	79676363	+	0	NA	promoter-TSS (NR_045898)	promoter-TSS (NR_045898)	-126	NR_045898	72218	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA
779	chr3	138413332	138416623	+	0	NA	promoter-TSS (NM_011996)	promoter-TSS (NM_011996)	-520	NM_011996	26876	Mm.158750	NM_011996	ENSMUSG00000037797	Adh4	Adh2	alcohol dehydrogenase 4 (class II), pi polypeptide	protein-coding
204	chr11	77973655	77981464	+	0	NA	exon (NM_001291225, exon 14 of 16)	exon (NM_001291225, exon 14 of 16)	-5257	NM_174852	268448	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding
761	chr1	133244087	133247478	+	0	NA	promoter-TSS (NM_001160268)	promoter-TSS (NM_001160268)	-315	NM_001160268	240753	Mm.253559	NM_182930	ENSMUSG00000041757	Plekha6	9530028L01Rik|AU042621|Pepp3	pleckstrin homology domain containing, family A member 6	protein-coding
1145	chr9	78366931	78370523	+	0	NA	promoter-TSS (NM_025274)	promoter-TSS (NM_025274)	-528	NM_025274	434423	Mm.139314	NM_025274	ENSMUSG00000060461	Dppa5a	AA536857|Dppa5|Esg1|ecat2	developmental pluripotency associated 5A	protein-coding
105	chr15	101051337	101057853	+	0	NA	promoter-TSS (NM_001214911)	promoter-TSS (NM_001214911)	-196	NM_001214911	668225	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding
323	chr15	101051337	101057853	+	0	NA	promoter-TSS (NM_001214911)	promoter-TSS (NM_001214911)	-196	NM_001214911	668225	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding
205	chr11	72398736	72401203	+	0	NA	exon (NM_177776, exon 7 of 8)	exon (NM_177776, exon 7 of 8)	11213	NR_105756	102465172		NR_105756	ENSMUSG00000098658	Mir6338	Gm27678|mmu-mir-6338	microRNA 6338	ncRNA
695	chr8	35821991	35829287	+	0	NA	exon (NM_027998, exon 1 of 1)	exon (NM_027998, exon 1 of 1)	920	NM_027998	71908	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding
916	chr3	89181136	89183897	+	0	NA	promoter-TSS (NM_001014995)	promoter-TSS (NM_001014995)	-627	NM_001014995	68521	Mm.274708	NM_001014995	ENSMUSG00000032657	Fam189b	1110013L07Rik	family with sequence similarity 189, member B	protein-coding
678	chr7	140966520	140969415	+	0	NA	promoter-TSS (NM_001112715)	promoter-TSS (NM_001112715)	-61	NM_001360727	68713	Mm.175661	NM_026820	ENSMUSG00000025491	Ifitm1	1110036C17Rik|DSPA2a|Mil-2|Mil2	interferon induced transmembrane protein 1	protein-coding
656	chr19	31663869	31665600	+	0	NA	promoter-TSS (NM_011160)	promoter-TSS (NM_011160)	-364	NM_011160	19091	Mm.381170	NM_011160	ENSMUSG00000052920	Prkg1	AW125416|CGKI|Gm19690|Prkg1b|Prkgr1b	protein kinase, cGMP-dependent, type I	protein-coding
636	chr3	108096039	108100608	+	0	NA	exon (NM_008141, exon 7 of 9)	exon (NM_008141, exon 7 of 9)	5257	NM_008141	14686	Mm.439652	NM_008141	ENSMUSG00000009108	Gnat2	AW490837|Gnat-2|Gt-2|Tcalpha	guanine nucleotide binding protein, alpha transducing 2	protein-coding
71	chr7	104011850	104015386	+	0	NA	promoter-TSS (NM_147084)	promoter-TSS (NM_147084)	-918	NM_147084	259088	Mm.422750	NM_147084	ENSMUSG00000066263	Olfr639	MOR12-1	olfactory receptor 639	protein-coding
474	chr6	56796835	56800563	+	0	NA	promoter-TSS (NM_145958)	promoter-TSS (NM_145958)	-886	NM_001362213	210973	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding
766	chr1	174171168	174173975	+	0	NA	promoter-TSS (NM_011465)	promoter-TSS (NM_011465)	-205	NM_011465	20739	Mm.200611	NM_011465	ENSMUSG00000026532	Spta1	AF093576|AI451697|Spna-1|Spna1|ha|ihj|nmf4|sph	spectrin alpha, erythrocytic 1	protein-coding
164	chr1	193104203	193105972	+	0	NA	non-coding (NR_151719, exon 12 of 12)	non-coding (NR_151719, exon 12 of 12)	25164	NM_145415	215193	Mm.173758	NM_145415	ENSMUSG00000016181	Diexf	AA408296|AW045375|Def	digestive organ expansion factor homolog (zebrafish)	protein-coding
1	chr4	86310442	86333833	+	0	NA	exon (NM_029967, exon 15 of 28)	exon (NM_029967, exon 15 of 28)	236166	NM_001081096	75811	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding
957	chr15	101051337	101057853	+	0	NA	promoter-TSS (NM_001214911)	promoter-TSS (NM_001214911)	-196	NM_001214911	668225	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding
461	chr5	136566925	136568564	+	0	NA	promoter-TSS (NM_009986)	promoter-TSS (NM_009986)	-254	NM_001291234	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding
524	chr3	129760549	129766071	+	0	NA	non-coding (NR_040589, exon 5 of 5)	non-coding (NR_040589, exon 5 of 5)	-7988	NM_010113	13645	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding
952	chr15	34675710	34682507	+	0	NA	promoter-TSS (NM_145469)	promoter-TSS (NM_145469)	-402	NM_145469	223473	Mm.258402	NM_145469	ENSMUSG00000038879	Nipal2	9330161F08Rik|Npal2	NIPA-like domain containing 2	protein-coding
487	chr11	106821998	106824126	+	0	NA	exon (NM_025481, exon 18 of 19)	exon (NM_025481, exon 18 of 19)	33810	NM_001166685	320162	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding
721	chr3	138413332	138416623	+	0	NA	promoter-TSS (NM_011996)	promoter-TSS (NM_011996)	-520	NM_011996	26876	Mm.158750	NM_011996	ENSMUSG00000037797	Adh4	Adh2	alcohol dehydrogenase 4 (class II), pi polypeptide	protein-coding
860	chr14	79513143	79516804	+	0	NA	promoter-TSS (NM_001286412)	promoter-TSS (NM_001286412)	-701	NM_001286412	13709	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding
287	chr11	118072277	118074922	+	0	NA	exon (NM_001167746, exon 47 of 81)	exon (NM_001167746, exon 47 of 81)	55620	NM_001167746	69926	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding
516	chr11	86543885	86546202	+	0	NA	promoter-TSS (NM_001199047)	promoter-TSS (NM_001199047)	52	NM_019756	56427	Mm.383207	NM_019756	ENSMUSG00000020513	Tubd1	4930550G19Rik|Tubd	tubulin, delta 1	protein-coding
1119	chr11	86543885	86546202	+	0	NA	promoter-TSS (NM_001199047)	promoter-TSS (NM_001199047)	52	NM_019756	56427	Mm.383207	NM_019756	ENSMUSG00000020513	Tubd1	4930550G19Rik|Tubd	tubulin, delta 1	protein-coding
400	chr9	121764987	121768002	+	0	NA	exon (NM_001166644, exon 4 of 6)	exon (NM_001166644, exon 4 of 6)	6461	NM_001166644	270210	Mm.473702	NM_001166644	ENSMUSG00000013419	Zfp651	4732420M22Rik|BC030045|R74626	zinc finger protein 651	protein-coding
628	chr6	56796835	56800563	+	0	NA	promoter-TSS (NM_145958)	promoter-TSS (NM_145958)	-886	NM_001362213	210973	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding
571	chr4	94738217	94740177	+	0	NA	promoter-TSS (NM_001290549)	promoter-TSS (NM_001290549)	-92	NM_001290551	21687	Mm.14313	NM_013690	ENSMUSG00000006386	Tek	AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2	TEK receptor tyrosine kinase	protein-coding
805	chr11	103826442	103830506	+	0	NA	exon (NM_008740, exon 18 of 21)	exon (NM_008740, exon 18 of 21)	54299	NM_009521	22415	Mm.159091	NM_009521	ENSMUSG00000000125	Wnt3	Int-4|Wnt-3	wingless-type MMTV integration site family, member 3	protein-coding
842	chr16	46494187	46499109	+	0	NA	exon (NM_021497, exon 1 of 7)	exon (NM_021497, exon 1 of 7)	319	NM_021496	58998	Mm.40477	NM_021495	ENSMUSG00000022656	Nectin3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113|Pvrl3	nectin cell adhesion molecule 3	protein-coding
1001	chr3	90050686	90053568	+	0	NA	promoter-TSS (NM_027500)	promoter-TSS (NM_027500)	353	NM_001165985	74383	Mm.25610	NM_028475	ENSMUSG00000042520	Ubap2l	3110083O19Rik|4932431F02Rik|A430103N23Rik|C77168|Nice-4|mKIAA0144	ubiquitin-associated protein 2-like	protein-coding
770	chr3	138123533	138126691	+	0	NA	exon (NM_008642, exon 2 of 18)	exon (NM_008642, exon 2 of 18)	6541	NM_008642	17777	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding
113	chr3	144951684	144954046	+	0	NA	exon (NM_207208, exon 14 of 14)	exon (NM_207208, exon 14 of 14)	-20336	NM_001033199	99709	Mm.440040	NM_001033199	ENSMUSG00000074195	Clca4b	AI747448|Clca7	chloride channel accessory 4B	protein-coding
85	chr15	101051337	101057853	+	0	NA	promoter-TSS (NM_001214911)	promoter-TSS (NM_001214911)	-196	NM_001214911	668225	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding
460	chr11	118072277	118074922	+	0	NA	exon (NM_001167746, exon 47 of 81)	exon (NM_001167746, exon 47 of 81)	55620	NM_001167746	69926	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding
28	chr15	76366625	76371079	+	0	NA	promoter-TSS (NM_021555)	promoter-TSS (NM_021555)	-46	NM_021555	59053	Mm.133202	NM_021555	ENSMUSG00000022554	Hgh1	Brp16|D15Ertd741e|Fam203a|MNCb-5873	HGH1 homolog	protein-coding
195	chr3	129760549	129766071	+	0	NA	non-coding (NR_040589, exon 5 of 5)	non-coding (NR_040589, exon 5 of 5)	-7988	NM_010113	13645	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding
643	chr3	86785946	86788725	+	0	NA	exon (NM_001195496, exon 17 of 17)	exon (NM_001195496, exon 17 of 17)	133549	NM_001357460	70762	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding
979	chr3	87756763	87760181	+	0	NA	5' UTR (NM_001289601, exon 7 of 25)	5' UTR (NM_001289601, exon 7 of 25)	-9849	NM_028971	74485	Mm.474494	NM_028971	ENSMUSG00000023084	Lrrc71	4933430H15Rik	leucine rich repeat containing 71	protein-coding
405	chr11	118072277	118074922	+	0	NA	exon (NM_001167746, exon 47 of 81)	exon (NM_001167746, exon 47 of 81)	55620	NM_001167746	69926	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding
654	chr19	45000252	45003291	+	0	NA	exon (NM_011976, exon 15 of 15)	exon (NM_011976, exon 15 of 15)	-3892	NM_001348254	226153	Mm.105585	NM_153796	ENSMUSG00000025209	Twnk	D19Ertd626e|PEO|Peo1|Twinl	twinkle mtDNA helicase	protein-coding
969	chr3	80682044	80683563	+	0	NA	non-coding (NR_152148, exon 18 of 18)	non-coding (NR_152148, exon 18 of 18)	120032	NM_013540	14800	Mm.220224	NM_013540	ENSMUSG00000033981	Gria2	GluA2|GluR-B|Glur-2|Glur2|gluR-K2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding
84	chr15	36102423	36105170	+	0	NA	exon (NM_001195748, exon 6 of 28)	exon (NM_001195748, exon 6 of 28)	36604	NM_001195748	626596	Mm.321798	NM_001195748	ENSMUSG00000037627	Rgs22	-	regulator of G-protein signalling 22	protein-coding
1110	chr11	58141518	58149489	+	0	NA	exon (NM_172558, exon 15 of 28)	exon (NM_172558, exon 15 of 28)	23036	NM_001166671	216766	Mm.275349	NM_172558	ENSMUSG00000037275	Gemin5	AA407055|AA407208|AI451603|BB194447|C330013N08	gem nuclear organelle associated protein 5	protein-coding
727	chr8	125896215	125899033	+	0	NA	promoter-TSS (NR_155422)	promoter-TSS (NR_155422)	-290	NR_155422	102632990	Mm.429446	NR_155422		A730098A19Rik	-	RIKEN cDNA A730098A19 gene	ncRNA
121	chr7	108159608	108161313	+	0	NA	promoter-TSS (NM_001011810)	promoter-TSS (NM_001011810)	-589	NM_001011810	258041	Mm.377336	NM_001011810	ENSMUSG00000108995	Olfr485	MOR204-30P	olfactory receptor 485	protein-coding
503	chr11	97701859	97703557	+	0	NA	promoter-TSS (NM_011971)	promoter-TSS (NM_011971)	-726	NM_011971	26446	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding
848	chr8	105825913	105828208	+	0	NA	promoter-TSS (NM_024445)	promoter-TSS (NM_024445)	290	NM_145824	74334	Mm.4206	NM_145824	ENSMUSG00000037415	Ranbp10	4432417N03Rik	RAN binding protein 10	protein-coding
335	chr11	70683559	70693049	+	0	NA	promoter-TSS (NM_178116)	promoter-TSS (NM_178116)	-199	NM_001190376	216874	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding
572	chr4	59959837	59962858	+	0	NA	promoter-TSS (NM_008648)	promoter-TSS (NM_008648)	-682	NM_008648	17843	Mm.457982	NM_008648	ENSMUSG00000041333	Mup4	Mup-4|Mup1	major urinary protein 4	protein-coding
1008	chr10	81021311	81029609	+	0	NA	promoter-TSS (NM_145217)	promoter-TSS (NM_145217)	-83	NM_145217	208666	Mm.44995	NM_145217	ENSMUSG00000043670	Diras1	Di-Ras1|Gbts1|RIG	DIRAS family, GTP-binding RAS-like 1	protein-coding
591	chr11	70683559	70693049	+	0	NA	promoter-TSS (NM_178116)	promoter-TSS (NM_178116)	-199	NM_001190376	216874	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding
623	chr8	109774061	109781273	+	0	NA	promoter-TSS (NM_009677)	promoter-TSS (NM_009677)	-916	NM_001301211	11765	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding
68	chr11	118072277	118074922	+	0	NA	exon (NM_001167746, exon 47 of 81)	exon (NM_001167746, exon 47 of 81)	55620	NM_001167746	69926	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding
723	chr16	32734880	32737573	+	0	NA	5' UTR (NM_080457, exon 1 of 27)	5' UTR (NM_080457, exon 1 of 27)	340	NM_080457	140474	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding
806	chr11	116237871	116239650	+	0	NA	promoter-TSS (NM_025276)	promoter-TSS (NM_025276)	-669	NM_025276	14027	Mm.293683	NM_025276	ENSMUSG00000034282	Evpl	-	envoplakin	protein-coding
135	chr11	116237871	116239650	+	0	NA	promoter-TSS (NM_025276)	promoter-TSS (NM_025276)	-669	NM_025276	14027	Mm.293683	NM_025276	ENSMUSG00000034282	Evpl	-	envoplakin	protein-coding
803	chr3	95158642	95161842	+	0	NA	promoter-TSS (NM_001272024)	promoter-TSS (NM_001272024)	-178	NM_001272024	20360	Mm.23662	NM_011351	ENSMUSG00000038777	Sema6c	Semay|mKIAA1869	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	protein-coding
772	chr3	138413332	138416623	+	0	NA	promoter-TSS (NM_011996)	promoter-TSS (NM_011996)	-520	NM_011996	26876	Mm.158750	NM_011996	ENSMUSG00000037797	Adh4	Adh2	alcohol dehydrogenase 4 (class II), pi polypeptide	protein-coding
924	chr9	121764987	121768002	+	0	NA	exon (NM_001166644, exon 4 of 6)	exon (NM_001166644, exon 4 of 6)	6461	NM_001166644	270210	Mm.473702	NM_001166644	ENSMUSG00000013419	Zfp651	4732420M22Rik|BC030045|R74626	zinc finger protein 651	protein-coding
137	chr6	56796835	56800563	+	0	NA	promoter-TSS (NM_145958)	promoter-TSS (NM_145958)	-886	NM_001362213	210973	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding
81	chr15	51991023	51994234	+	0	NA	promoter-TSS (NM_009009)	promoter-TSS (NM_009009)	-868	NM_009009	19357	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding
1039	chr16	10312485	10315249	+	0	NA	5' UTR (NM_007929, exon 1 of 5)	5' UTR (NM_007929, exon 1 of 5)	101	NM_007929	13731	Mm.246009	NM_007929	ENSMUSG00000022505	Emp2	XMP	epithelial membrane protein 2	protein-coding
669	chr5	134930717	134933866	+	0	NA	promoter-TSS (NM_024479)	promoter-TSS (NM_024479)	-82	NM_001359538	79565	Mm.34235	NM_024479	ENSMUSG00000040557	Mettl27	AW492986|BC002286|Wbscr27	methyltransferase like 27	protein-coding
815	chr2	156861444	156863850	+	0	NA	promoter-TSS (NM_026124)	promoter-TSS (NM_026124)	298	NR_015591	74487	Mm.490465	NR_015591	ENSMUSG00000085741	5430405H02Rik	2610307N17Rik	RIKEN cDNA 5430405H02 gene	ncRNA
675	chr7	119440833	119450163	+	0	NA	exon (NM_025989, exon 10 of 11)	exon (NM_025989, exon 10 of 11)	13774	NM_025989	67133	Mm.46403	NM_025989	ENSMUSG00000030954	Gp2	2310037I18Rik|AV060639	glycoprotein 2 (zymogen granule membrane)	protein-coding
619	chr13	62783703	62787820	+	0	NA	promoter-TSS (NM_001256065)	promoter-TSS (NM_001256065)	47	NM_001256065	380850	Mm.439823	NM_001256065	ENSMUSG00000091183	Gm5141	-	predicted gene 5141	protein-coding
840	chr1	164144042	164158132	+	0	NA	promoter-TSS (NM_007976)	promoter-TSS (NM_007976)	-748	NM_007976	14067	Mm.12900	NM_007976	ENSMUSG00000026579	F5	AI173222|Cf-5|Cf5	coagulation factor V	protein-coding
437	chr17	32009464	32013015	+	0	NA	exon (NM_028902, exon 5 of 8)	exon (NM_028902, exon 5 of 8)	23269	NM_028902	74377	Mm.75856	NM_028902	ENSMUSG00000002076	Hsf2bp	4932437G14Rik	heat shock transcription factor 2 binding protein	protein-coding
521	chr11	118072277	118074922	+	0	NA	exon (NM_001167746, exon 47 of 81)	exon (NM_001167746, exon 47 of 81)	55620	NM_001167746	69926	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding
743	chr7	140966520	140969415	+	0	NA	promoter-TSS (NM_001112715)	promoter-TSS (NM_001112715)	-61	NM_001360727	68713	Mm.175661	NM_026820	ENSMUSG00000025491	Ifitm1	1110036C17Rik|DSPA2a|Mil-2|Mil2	interferon induced transmembrane protein 1	protein-coding
393	chr2	112130623	112132968	+	0	NA	promoter-TSS (NM_146742)	promoter-TSS (NM_146742)	-980	NM_146742	258737	Mm.377665	NM_146742	ENSMUSG00000109801	Olfr1316	MOR245-1|MOR245-26	olfactory receptor 1316	protein-coding
1117	chr11	106821998	106824126	+	0	NA	exon (NM_025481, exon 18 of 19)	exon (NM_025481, exon 18 of 19)	33810	NM_001166685	320162	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding
717	chr5	122706371	122708458	+	0	NA	promoter-TSS (NM_011026)	promoter-TSS (NM_011026)	-130	NM_011026	18438	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding
1009	chr10	87964007	87968357	+	0	NA	promoter-TSS (NR_000040)	promoter-TSS (NR_000040)	-489	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo
702	chr8	72432171	72438049	+	0	NA	promoter-TSS (NM_029782)	promoter-TSS (NM_029782)	46	NM_029782	73316	Mm.196315	NM_028500	ENSMUSG00000019732	Calr3	1700031L01Rik|6330586I20Rik|Crt2|cspn	calreticulin 3	protein-coding
390	chr2	154379486	154382377	+	0	NA	exon (NM_009228, exon 4 of 8)	exon (NM_009228, exon 4 of 8)	-8212	NM_025876	66971	Mm.289427	NM_025876	ENSMUSG00000027487	Cdk5rap1	2310066P17Rik	CDK5 regulatory subunit associated protein 1	protein-coding
389	chr13	62783703	62787820	+	0	NA	promoter-TSS (NM_001256065)	promoter-TSS (NM_001256065)	47	NM_001256065	380850	Mm.439823	NM_001256065	ENSMUSG00000091183	Gm5141	-	predicted gene 5141	protein-coding
679	chr7	126862615	126865802	+	0	NA	exon (NM_172746, exon 4 of 7)	exon (NM_172746, exon 4 of 7)	2236	NM_172746	233876	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding
777	chr3	144951684	144954046	+	0	NA	exon (NM_207208, exon 14 of 14)	exon (NM_207208, exon 14 of 14)	-20336	NM_001033199	99709	Mm.440040	NM_001033199	ENSMUSG00000074195	Clca4b	AI747448|Clca7	chloride channel accessory 4B	protein-coding
200	chr3	86785946	86788725	+	0	NA	exon (NM_001195496, exon 17 of 17)	exon (NM_001195496, exon 17 of 17)	133549	NM_001357460	70762	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding
180	chr4	94738217	94740177	+	0	NA	promoter-TSS (NM_001290549)	promoter-TSS (NM_001290549)	-92	NM_001290551	21687	Mm.14313	NM_013690	ENSMUSG00000006386	Tek	AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2	TEK receptor tyrosine kinase	protein-coding
165	chr1	174171168	174173975	+	0	NA	promoter-TSS (NM_011465)	promoter-TSS (NM_011465)	-205	NM_011465	20739	Mm.200611	NM_011465	ENSMUSG00000026532	Spta1	AF093576|AI451697|Spna-1|Spna1|ha|ihj|nmf4|sph	spectrin alpha, erythrocytic 1	protein-coding
171	chr8	70896921	70899057	+	0	NA	promoter-TSS (NM_029751)	promoter-TSS (NM_029751)	-546	NM_029751	76808	Mm.379251	NM_029751	ENSMUSG00000045128	Rpl18a	2510019J09Rik	ribosomal protein L18A	protein-coding
237	chr15	90566402	90577684	+	0	NA	exon (NM_025815, exon 8 of 20)	exon (NM_025815, exon 8 of 20)	107345	NM_001357979	66871	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding
209	chr11	106821998	106824126	+	0	NA	exon (NM_025481, exon 18 of 19)	exon (NM_025481, exon 18 of 19)	33810	NM_001166685	320162	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding
361	chr2	154379486	154382377	+	0	NA	exon (NM_009228, exon 4 of 8)	exon (NM_009228, exon 4 of 8)	-8212	NM_025876	66971	Mm.289427	NM_025876	ENSMUSG00000027487	Cdk5rap1	2310066P17Rik	CDK5 regulatory subunit associated protein 1	protein-coding
528	chr19	54044159	54048319	+	0	NA	exon (NM_007417, exon 1 of 1)	exon (NM_007417, exon 1 of 1)	1057	NM_007417	11551	Mm.235195	NM_007417	ENSMUSG00000033717	Adra2a	AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR	adrenergic receptor, alpha 2a	protein-coding
75	chr7	140966520	140969415	+	0	NA	promoter-TSS (NM_001112715)	promoter-TSS (NM_001112715)	-61	NM_001360727	68713	Mm.175661	NM_026820	ENSMUSG00000025491	Ifitm1	1110036C17Rik|DSPA2a|Mil-2|Mil2	interferon induced transmembrane protein 1	protein-coding
627	chr6	83977943	83980064	+	0	NA	exon (NM_008717, exon 24 of 27)	exon (NM_008717, exon 24 of 27)	-29595	NM_001077694	26903	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding
295	chr11	77973655	77981464	+	0	NA	exon (NM_001291225, exon 14 of 16)	exon (NM_001291225, exon 14 of 16)	-5257	NM_174852	268448	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding
981	chr17	37224529	37227100	+	0	NA	exon (NM_146514, exon 1 of 1)	exon (NM_146514, exon 1 of 1)	687	NM_146514	258507	Mm.377543	NM_146514	ENSMUSG00000064121	Olfr96	MOR121-1	olfactory receptor 96	protein-coding
218	chr11	116237871	116239650	+	0	NA	promoter-TSS (NM_025276)	promoter-TSS (NM_025276)	-669	NM_025276	14027	Mm.293683	NM_025276	ENSMUSG00000034282	Evpl	-	envoplakin	protein-coding
950	chr8	84770530	84777859	+	0	NA	5' UTR (NM_001081981, exon 1 of 11)	5' UTR (NM_001081981, exon 1 of 11)	175	NM_001081981	18032	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding
663	chr6	55448891	55454490	+	0	NA	promoter-TSS (NM_007407)	promoter-TSS (NM_007407)	-288	NM_007407	11517	Mm.44245	NM_007407	ENSMUSG00000029778	Adcyap1r1	2900024I10Rik|AI846590|PAC1|PAC1R|PACAP1-R	adenylate cyclase activating polypeptide 1 receptor 1	protein-coding
810	chr3	138123533	138126691	+	0	NA	exon (NM_008642, exon 2 of 18)	exon (NM_008642, exon 2 of 18)	6541	NM_008642	17777	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding
481	chr15	90566402	90577684	+	0	NA	exon (NM_025815, exon 8 of 20)	exon (NM_025815, exon 8 of 20)	107345	NM_001357979	66871	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding
1101	chr8	86555499	86559794	+	0	NA	exon (NM_172912, exon 6 of 29)	exon (NM_172912, exon 6 of 29)	8944	NM_172912	244562	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding
151	chr11	106821998	106824126	+	0	NA	exon (NM_025481, exon 18 of 19)	exon (NM_025481, exon 18 of 19)	33810	NM_001166685	320162	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding
878	chr11	118072277	118074922	+	0	NA	exon (NM_001167746, exon 47 of 81)	exon (NM_001167746, exon 47 of 81)	55620	NM_001167746	69926	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding
129	chr11	86543885	86546202	+	0	NA	promoter-TSS (NM_001199047)	promoter-TSS (NM_001199047)	52	NM_019756	56427	Mm.383207	NM_019756	ENSMUSG00000020513	Tubd1	4930550G19Rik|Tubd	tubulin, delta 1	protein-coding
1086	chr3	108096039	108100608	+	0	NA	exon (NM_008141, exon 7 of 9)	exon (NM_008141, exon 7 of 9)	5257	NM_008141	14686	Mm.439652	NM_008141	ENSMUSG00000009108	Gnat2	AW490837|Gnat-2|Gt-2|Tcalpha	guanine nucleotide binding protein, alpha transducing 2	protein-coding
674	chr8	109774061	109781273	+	0	NA	promoter-TSS (NM_009677)	promoter-TSS (NM_009677)	-916	NM_001301211	11765	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding
90	chr15	101221001	101227541	+	0	NA	promoter-TSS (NM_019518)	promoter-TSS (NM_019518)	64	NM_019518	56149	Mm.276573	NM_019518	ENSMUSG00000000531	Grasp	tamalin	GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein	protein-coding
958	chr15	85814962	85818572	+	0	NA	exon (NM_011105, exon 1 of 1)	exon (NM_011105, exon 1 of 1)	4966	NM_011105	18766	Mm.89965	NM_011105	ENSMUSG00000052496	Pkdrej	-	polycystin (PKD) family receptor for egg jelly	protein-coding
917	chr3	80686809	80689869	+	0	NA	non-coding (NR_152148, exon 18 of 18)	non-coding (NR_152148, exon 18 of 18)	114496	NM_013540	14800	Mm.220224	NM_013540	ENSMUSG00000033981	Gria2	GluA2|GluR-B|Glur-2|Glur2|gluR-K2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding
399	chr2	154379486	154382377	+	0	NA	exon (NM_009228, exon 4 of 8)	exon (NM_009228, exon 4 of 8)	-8212	NM_025876	66971	Mm.289427	NM_025876	ENSMUSG00000027487	Cdk5rap1	2310066P17Rik	CDK5 regulatory subunit associated protein 1	protein-coding
216	chr11	102145422	102147853	+	0	NA	exon (NM_145829, exon 2 of 7)	exon (NM_145829, exon 2 of 7)	1124	NM_145829	217214	Mm.31686	NM_145829	ENSMUSG00000048217	Nags	1700120E20Rik|argA	N-acetylglutamate synthase	protein-coding
998	chr3	138123533	138126691	+	0	NA	exon (NM_008642, exon 2 of 18)	exon (NM_008642, exon 2 of 18)	6541	NM_008642	17777	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding
56	chr11	116237871	116239650	+	0	NA	promoter-TSS (NM_025276)	promoter-TSS (NM_025276)	-669	NM_025276	14027	Mm.293683	NM_025276	ENSMUSG00000034282	Evpl	-	envoplakin	protein-coding
945	chr8	109774061	109781273	+	0	NA	promoter-TSS (NM_009677)	promoter-TSS (NM_009677)	-916	NM_001301211	11765	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding
512	chr11	50022516	50028428	+	0	NA	exon (NM_001290749, exon 1 of 8)	exon (NM_001290749, exon 1 of 8)	141	NM_001290749	59044	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding
558	chr11	106821998	106824126	+	0	NA	exon (NM_025481, exon 18 of 19)	exon (NM_025481, exon 18 of 19)	33810	NM_001166685	320162	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding
947	chr8	85230192	85231933	+	0	NA	exon (NM_146859, exon 1 of 1)	exon (NM_146859, exon 1 of 1)	565	NM_146859	258858	Mm.354727	NM_146859	ENSMUSG00000051952	Olfr371	MOR141-3	olfactory receptor 371	protein-coding
526	chr19	42044084	42046618	+	0	NA	promoter-TSS (NM_026152)	promoter-TSS (NM_026152)	-500	NM_026152	67432	Mm.24196	NM_026152	ENSMUSG00000025176	Hoga1	0610010D20Rik|Dhdpsl|Npl2	4-hydroxy-2-oxoglutarate aldolase 1	protein-coding
89	chr15	76699844	76702870	+	0	NA	promoter-TSS (NM_027122)	promoter-TSS (NM_027122)	-185	NM_027122	69572	Mm.34920	NM_027122	ENSMUSG00000019080	Mfsd3	2310010G13Rik	major facilitator superfamily domain containing 3	protein-coding
763	chr1	155082069	155085861	+	0	NA	promoter-TSS (NR_151545)	promoter-TSS (NR_151545)	-701	NR_151545	671336	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA
1072	chr1	162547478	162549847	+	0	NA	promoter-TSS (NM_144877)	promoter-TSS (NM_144877)	-317	NM_144877	71449	Mm.270569	NM_144877	ENSMUSG00000026694	Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding
424	chr9	121764987	121768002	+	0	NA	exon (NM_001166644, exon 4 of 6)	exon (NM_001166644, exon 4 of 6)	6461	NM_001166644	270210	Mm.473702	NM_001166644	ENSMUSG00000013419	Zfp651	4732420M22Rik|BC030045|R74626	zinc finger protein 651	protein-coding
48	chr11	97796579	97800949	+	0	NA	promoter-TSS (NM_010688)	promoter-TSS (NM_010688)	-801	NM_010688	16796	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding
751	chr19	10918683	10923000	+	0	NA	promoter-TSS (NM_009580)	promoter-TSS (NM_009580)	-240	NM_009580	22786	Mm.24767	NM_009580	ENSMUSG00000024734	Zp1	-	zona pellucida glycoprotein 1	protein-coding
67	chr11	116237871	116239650	+	0	NA	promoter-TSS (NM_025276)	promoter-TSS (NM_025276)	-669	NM_025276	14027	Mm.293683	NM_025276	ENSMUSG00000034282	Evpl	-	envoplakin	protein-coding
852	chr8	86555499	86559794	+	0	NA	exon (NM_172912, exon 6 of 29)	exon (NM_172912, exon 6 of 29)	8944	NM_172912	244562	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding
3	chr4	94738217	94740177	+	0	NA	promoter-TSS (NM_001290549)	promoter-TSS (NM_001290549)	-92	NM_001290551	21687	Mm.14313	NM_013690	ENSMUSG00000006386	Tek	AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2	TEK receptor tyrosine kinase	protein-coding
1106	chr1	162547478	162549847	+	0	NA	promoter-TSS (NM_144877)	promoter-TSS (NM_144877)	-317	NM_144877	71449	Mm.270569	NM_144877	ENSMUSG00000026694	Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding
47	chr11	106821998	106824126	+	0	NA	exon (NM_025481, exon 18 of 19)	exon (NM_025481, exon 18 of 19)	33810	NM_001166685	320162	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding
1100	chr8	85230192	85231933	+	0	NA	exon (NM_146859, exon 1 of 1)	exon (NM_146859, exon 1 of 1)	565	NM_146859	258858	Mm.354727	NM_146859	ENSMUSG00000051952	Olfr371	MOR141-3	olfactory receptor 371	protein-coding
450	chr4	94738217	94740177	+	0	NA	promoter-TSS (NM_001290549)	promoter-TSS (NM_001290549)	-92	NM_001290551	21687	Mm.14313	NM_013690	ENSMUSG00000006386	Tek	AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2	TEK receptor tyrosine kinase	protein-coding
1024	chr8	84976607	84979020	+	0	NA	exon (NM_008416, exon 1 of 1)	exon (NM_008416, exon 1 of 1)	935	NM_008416	16477	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding
893	chr5	136566925	136568564	+	0	NA	promoter-TSS (NM_009986)	promoter-TSS (NM_009986)	-254	NM_001291234	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding
254	chr4	115495412	115498050	+	0	NA	promoter-TSS (NM_007822)	promoter-TSS (NM_007822)	-590	NM_007822	13119	Mm.250901	NM_007822	ENSMUSG00000028715	Cyp4a14	AI314743	cytochrome P450, family 4, subfamily a, polypeptide 14	protein-coding
240	chr15	85814962	85818572	+	0	NA	exon (NM_011105, exon 1 of 1)	exon (NM_011105, exon 1 of 1)	4966	NM_011105	18766	Mm.89965	NM_011105	ENSMUSG00000052496	Pkdrej	-	polycystin (PKD) family receptor for egg jelly	protein-coding
1091	chr4	94738217	94740177	+	0	NA	promoter-TSS (NM_001290549)	promoter-TSS (NM_001290549)	-92	NM_001290551	21687	Mm.14313	NM_013690	ENSMUSG00000006386	Tek	AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2	TEK receptor tyrosine kinase	protein-coding
443	chr19	42099763	42101817	+	0	NA	exon (NM_145501, exon 2 of 9)	exon (NM_145501, exon 2 of 9)	10355	NM_145501	84095	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding
103	chr15	76366625	76371079	+	0	NA	promoter-TSS (NM_021555)	promoter-TSS (NM_021555)	-46	NM_021555	59053	Mm.133202	NM_021555	ENSMUSG00000022554	Hgh1	Brp16|D15Ertd741e|Fam203a|MNCb-5873	HGH1 homolog	protein-coding
442	chr19	54044159	54048319	+	0	NA	exon (NM_007417, exon 1 of 1)	exon (NM_007417, exon 1 of 1)	1057	NM_007417	11551	Mm.235195	NM_007417	ENSMUSG00000033717	Adra2a	AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR	adrenergic receptor, alpha 2a	protein-coding
740	chr16	10312485	10315249	+	0	NA	5' UTR (NM_007929, exon 1 of 5)	5' UTR (NM_007929, exon 1 of 5)	101	NM_007929	13731	Mm.246009	NM_007929	ENSMUSG00000022505	Emp2	XMP	epithelial membrane protein 2	protein-coding
536	chr12	86191792	86197838	+	0	NA	non-coding (NR_046081, exon 5 of 5)	non-coding (NR_046081, exon 5 of 5)	25474	NR_046081	328136	Mm.312050	NR_046081	ENSMUSG00000097543	Gm805	-	predicted gene 805	ncRNA
493	chr11	58141518	58149489	+	0	NA	exon (NM_172558, exon 15 of 28)	exon (NM_172558, exon 15 of 28)	23036	NM_001166671	216766	Mm.275349	NM_172558	ENSMUSG00000037275	Gemin5	AA407055|AA407208|AI451603|BB194447|C330013N08	gem nuclear organelle associated protein 5	protein-coding
111	chr15	51991023	51994234	+	0	NA	promoter-TSS (NM_009009)	promoter-TSS (NM_009009)	-868	NM_009009	19357	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding
532	chr19	11817824	11820948	+	0	NA	promoter-TSS (NM_152220)	promoter-TSS (NM_152220)	17	NM_001360386	20908	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding
609	chr17	63498316	63501177	+	0	NA	exon (NM_015794, exon 1 of 9)	exon (NM_015794, exon 1 of 9)	834	NM_015794	50758	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding
970	chr3	108096039	108100608	+	0	NA	exon (NM_008141, exon 7 of 9)	exon (NM_008141, exon 7 of 9)	5257	NM_008141	14686	Mm.439652	NM_008141	ENSMUSG00000009108	Gnat2	AW490837|Gnat-2|Gt-2|Tcalpha	guanine nucleotide binding protein, alpha transducing 2	protein-coding
1080	chr19	42099763	42101817	+	0	NA	exon (NM_145501, exon 2 of 9)	exon (NM_145501, exon 2 of 9)	10355	NM_145501	84095	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding
167	chr8	125896215	125899033	+	0	NA	promoter-TSS (NR_155422)	promoter-TSS (NR_155422)	-290	NR_155422	102632990	Mm.429446	NR_155422		A730098A19Rik	-	RIKEN cDNA A730098A19 gene	ncRNA
128	chr11	97796579	97800949	+	0	NA	promoter-TSS (NM_010688)	promoter-TSS (NM_010688)	-801	NM_010688	16796	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding
1002	chr3	144951684	144954046	+	0	NA	exon (NM_207208, exon 14 of 14)	exon (NM_207208, exon 14 of 14)	-20336	NM_001033199	99709	Mm.440040	NM_001033199	ENSMUSG00000074195	Clca4b	AI747448|Clca7	chloride channel accessory 4B	protein-coding
833	chr2	156861444	156863850	+	0	NA	promoter-TSS (NM_026124)	promoter-TSS (NM_026124)	298	NR_015591	74487	Mm.490465	NR_015591	ENSMUSG00000085741	5430405H02Rik	2610307N17Rik	RIKEN cDNA 5430405H02 gene	ncRNA
114	chr15	101051337	101057853	+	0	NA	promoter-TSS (NM_001214911)	promoter-TSS (NM_001214911)	-196	NM_001214911	668225	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding
641	chr3	90050686	90053568	+	0	NA	promoter-TSS (NM_027500)	promoter-TSS (NM_027500)	353	NM_001165985	74383	Mm.25610	NM_028475	ENSMUSG00000042520	Ubap2l	3110083O19Rik|4932431F02Rik|A430103N23Rik|C77168|Nice-4|mKIAA0144	ubiquitin-associated protein 2-like	protein-coding
305	chr11	118072277	118074922	+	0	NA	exon (NM_001167746, exon 47 of 81)	exon (NM_001167746, exon 47 of 81)	55620	NM_001167746	69926	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding
1088	chr3	129760549	129766071	+	0	NA	non-coding (NR_040589, exon 5 of 5)	non-coding (NR_040589, exon 5 of 5)	-7988	NM_010113	13645	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding
936	chr8	105825913	105828208	+	0	NA	promoter-TSS (NM_024445)	promoter-TSS (NM_024445)	290	NM_145824	74334	Mm.4206	NM_145824	ENSMUSG00000037415	Ranbp10	4432417N03Rik	RAN binding protein 10	protein-coding
768	chr1	93822921	93825827	+	0	NA	promoter-TSS (NM_178882)	promoter-TSS (NM_178882)	-866	NM_178882	98314	Mm.383401	NM_178882	ENSMUSG00000073609	D2hgdh	AA408776|AA408778|AI325464	D-2-hydroxyglutarate dehydrogenase	protein-coding
299	chr11	97701859	97703557	+	0	NA	promoter-TSS (NM_011971)	promoter-TSS (NM_011971)	-726	NM_011971	26446	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding
642	chr3	144951684	144954046	+	0	NA	exon (NM_207208, exon 14 of 14)	exon (NM_207208, exon 14 of 14)	-20336	NM_001033199	99709	Mm.440040	NM_001033199	ENSMUSG00000074195	Clca4b	AI747448|Clca7	chloride channel accessory 4B	protein-coding
50	chr11	97701859	97703557	+	0	NA	promoter-TSS (NM_011971)	promoter-TSS (NM_011971)	-726	NM_011971	26446	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding
699	chr8	105303514	105310753	+	0	NA	exon (NM_172760, exon 7 of 20)	exon (NM_172760, exon 7 of 20)	1327	NR_029761	723841		NR_029761	ENSMUSG00000070130	Mir328	Mirn328|miR-328|mmu-mir-328	microRNA 328	ncRNA
906	chr5	103846847	103848600	+	0	NA	exon (NM_001080798, exon 18 of 20)	exon (NM_001080798, exon 18 of 20)	63536	NM_001359987	246293	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding
266	chr18	37636339	37639589	+	0	NA	exon (NM_001159275, exon 1 of 1)	exon (NM_001159275, exon 1 of 1)	759	NM_001159275	83885	Mm.193029	NM_001159275	ENSMUSG00000050304	Slc25a2	Ornt2	solute carrier family 25 (mitochondrial carrier, ornithine transporter) member 2	protein-coding
985	chr19	41585920	41591070	+	0	NA	promoter-TSS (NR_106166)	promoter-TSS (NR_106166)	-156	NR_106166	102465884		NR_106166	ENSMUSG00000098286	Mir8091	Gm27575|mmu-mir-8091	microRNA 8091	ncRNA
834	chr2	155944494	155947639	+	0	NA	promoter-TSS (NM_008109)	promoter-TSS (NM_008109)	-699	NM_008109	14563	Mm.4744	NM_008109	ENSMUSG00000038259	Gdf5	BMP-14|Cdmp-1|bp|brp	growth differentiation factor 5	protein-coding
1031	chr3	90050686	90053568	+	0	NA	promoter-TSS (NM_027500)	promoter-TSS (NM_027500)	353	NM_001165985	74383	Mm.25610	NM_028475	ENSMUSG00000042520	Ubap2l	3110083O19Rik|4932431F02Rik|A430103N23Rik|C77168|Nice-4|mKIAA0144	ubiquitin-associated protein 2-like	protein-coding
1053	chr6	83977943	83980064	+	0	NA	exon (NM_008717, exon 24 of 27)	exon (NM_008717, exon 24 of 27)	-29595	NM_001077694	26903	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding
548	chr2	167529849	167544829	+	0	NA	promoter-TSS (NM_011427)	promoter-TSS (NM_011427)	-856	NM_011427	20613	Mm.2093	NM_011427	ENSMUSG00000042821	Snai1	Sna|Sna1|Snail|Snail1	snail family zinc finger 1	protein-coding
466	chr5	103846847	103848600	+	0	NA	exon (NM_001080798, exon 18 of 20)	exon (NM_001080798, exon 18 of 20)	63536	NM_001359987	246293	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding
238	chr15	76366625	76371079	+	0	NA	promoter-TSS (NM_021555)	promoter-TSS (NM_021555)	-46	NM_021555	59053	Mm.133202	NM_021555	ENSMUSG00000022554	Hgh1	Brp16|D15Ertd741e|Fam203a|MNCb-5873	HGH1 homolog	protein-coding
854	chr8	84770530	84777859	+	0	NA	5' UTR (NM_001081981, exon 1 of 11)	5' UTR (NM_001081981, exon 1 of 11)	175	NM_001081981	18032	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding
530	chr19	40723258	40728905	+	0	NA	exon (NM_009848, exon 6 of 10)	exon (NM_009848, exon 6 of 10)	66311	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding
133	chr11	102145422	102147853	+	0	NA	exon (NM_145829, exon 2 of 7)	exon (NM_145829, exon 2 of 7)	1124	NM_145829	217214	Mm.31686	NM_145829	ENSMUSG00000048217	Nags	1700120E20Rik|argA	N-acetylglutamate synthase	protein-coding
1131	chr7	73808866	73811257	+	0	NA	non-coding (NR_077222, exon 4 of 4)	non-coding (NR_077222, exon 4 of 4)	6442	NR_077222	100579147	Mm.109205	NR_077222	ENSMUSG00000074067	Gm10619	4932443D20	predicted gene 10619	ncRNA
870	chr6	52756462	52758882	+	0	NA	exon (NM_025816, exon 15 of 18)	exon (NM_025816, exon 15 of 18)	43507	NM_001355596	52440	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding
459	chr11	116237871	116239650	+	0	NA	promoter-TSS (NM_025276)	promoter-TSS (NM_025276)	-669	NM_025276	14027	Mm.293683	NM_025276	ENSMUSG00000034282	Evpl	-	envoplakin	protein-coding
946	chr8	72432171	72438049	+	0	NA	promoter-TSS (NM_029782)	promoter-TSS (NM_029782)	46	NM_029782	73316	Mm.196315	NM_028500	ENSMUSG00000019732	Calr3	1700031L01Rik|6330586I20Rik|Crt2|cspn	calreticulin 3	protein-coding
1057	chr8	105825913	105828208	+	0	NA	promoter-TSS (NM_024445)	promoter-TSS (NM_024445)	290	NM_145824	74334	Mm.4206	NM_145824	ENSMUSG00000037415	Ranbp10	4432417N03Rik	RAN binding protein 10	protein-coding
468	chr11	97796579	97800949	+	0	NA	promoter-TSS (NM_010688)	promoter-TSS (NM_010688)	-801	NM_010688	16796	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding
639	chr3	89181136	89183897	+	0	NA	promoter-TSS (NM_001014995)	promoter-TSS (NM_001014995)	-627	NM_001014995	68521	Mm.274708	NM_001014995	ENSMUSG00000032657	Fam189b	1110013L07Rik	family with sequence similarity 189, member B	protein-coding
984	chr19	42044084	42046618	+	0	NA	promoter-TSS (NM_026152)	promoter-TSS (NM_026152)	-500	NM_026152	67432	Mm.24196	NM_026152	ENSMUSG00000025176	Hoga1	0610010D20Rik|Dhdpsl|Npl2	4-hydroxy-2-oxoglutarate aldolase 1	protein-coding
765	chr1	193104203	193105972	+	0	NA	non-coding (NR_151719, exon 12 of 12)	non-coding (NR_151719, exon 12 of 12)	25164	NM_145415	215193	Mm.173758	NM_145415	ENSMUSG00000016181	Diexf	AA408296|AW045375|Def	digestive organ expansion factor homolog (zebrafish)	protein-coding
928	chr9	78366931	78370523	+	0	NA	promoter-TSS (NM_025274)	promoter-TSS (NM_025274)	-528	NM_025274	434423	Mm.139314	NM_025274	ENSMUSG00000060461	Dppa5a	AA536857|Dppa5|Esg1|ecat2	developmental pluripotency associated 5A	protein-coding
938	chr8	109774061	109781273	+	0	NA	promoter-TSS (NM_009677)	promoter-TSS (NM_009677)	-916	NM_001301211	11765	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding
874	chr11	97701859	97703557	+	0	NA	promoter-TSS (NM_011971)	promoter-TSS (NM_011971)	-726	NM_011971	26446	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding
462	chr5	122712812	122716128	+	0	NA	exon (NM_011026, exon 2 of 12)	exon (NM_011026, exon 2 of 12)	6926	NM_001310718	18438	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding
29	chr15	101051337	101057853	+	0	NA	promoter-TSS (NM_001214911)	promoter-TSS (NM_001214911)	-196	NM_001214911	668225	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding
1060	chr8	85230192	85231933	+	0	NA	exon (NM_146859, exon 1 of 1)	exon (NM_146859, exon 1 of 1)	565	NM_146859	258858	Mm.354727	NM_146859	ENSMUSG00000051952	Olfr371	MOR141-3	olfactory receptor 371	protein-coding
1020	chr8	72432171	72438049	+	0	NA	promoter-TSS (NM_029782)	promoter-TSS (NM_029782)	46	NM_029782	73316	Mm.196315	NM_028500	ENSMUSG00000019732	Calr3	1700031L01Rik|6330586I20Rik|Crt2|cspn	calreticulin 3	protein-coding
231	chr15	85814962	85818572	+	0	NA	exon (NM_011105, exon 1 of 1)	exon (NM_011105, exon 1 of 1)	4966	NM_011105	18766	Mm.89965	NM_011105	ENSMUSG00000052496	Pkdrej	-	polycystin (PKD) family receptor for egg jelly	protein-coding
681	chr10	127119090	127121867	+	0	NA	exon (NM_001171026, exon 2 of 15)	exon (NM_001171026, exon 2 of 15)	682	NM_001171026	216440	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding
986	chr19	54044159	54048319	+	0	NA	exon (NM_007417, exon 1 of 1)	exon (NM_007417, exon 1 of 1)	1057	NM_007417	11551	Mm.235195	NM_007417	ENSMUSG00000033717	Adra2a	AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR	adrenergic receptor, alpha 2a	protein-coding
549	chr2	134643646	134646288	+	0	NA	promoter-TSS (NM_029148)	promoter-TSS (NM_029148)	-846	NM_029148	52837	Mm.264096	NM_029148	ENSMUSG00000034723	Tmx4	2810417D04Rik|4930500L08Rik|AI843224|AW046784|D2Bwg1356e|Txndc13|mKIAA1162	thioredoxin-related transmembrane protein 4	protein-coding
313	chr17	37224529	37227100	+	0	NA	exon (NM_146514, exon 1 of 1)	exon (NM_146514, exon 1 of 1)	687	NM_146514	258507	Mm.377543	NM_146514	ENSMUSG00000064121	Olfr96	MOR121-1	olfactory receptor 96	protein-coding
375	chr19	45000252	45003291	+	0	NA	exon (NM_011976, exon 15 of 15)	exon (NM_011976, exon 15 of 15)	-3892	NM_001348254	226153	Mm.105585	NM_153796	ENSMUSG00000025209	Twnk	D19Ertd626e|PEO|Peo1|Twinl	twinkle mtDNA helicase	protein-coding
207	chr11	70683559	70693049	+	0	NA	promoter-TSS (NM_178116)	promoter-TSS (NM_178116)	-199	NM_001190376	216874	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding
855	chr16	97949022	97951717	+	0	NA	exon (NM_001081684, exon 2 of 2)	exon (NM_001081684, exon 2 of 2)	12253	NM_001320385	114565	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding
605	chr12	104113173	104119165	+	0	NA	exon (NM_001167705, exon 2 of 5)	exon (NM_001167705, exon 2 of 5)	3445	NM_001167705	74069	Mm.159128	NM_028740	ENSMUSG00000041536	Serpina3a	-	serine (or cysteine) peptidase inhibitor, clade A, member 3A	protein-coding
923	chr3	95158642	95161842	+	0	NA	promoter-TSS (NM_001272024)	promoter-TSS (NM_001272024)	-178	NM_001272024	20360	Mm.23662	NM_011351	ENSMUSG00000038777	Sema6c	Semay|mKIAA1869	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	protein-coding
545	chr2	93848895	93852828	+	0	NA	promoter-TSS (NM_001290782)	promoter-TSS (NM_001290782)	-918	NM_001290782	329470	Mm.486910	NM_183220	ENSMUSG00000040272	Accs	2610203E10Rik|Phacs	1-aminocyclopropane-1-carboxylate synthase (non-functional)	protein-coding
1023	chr8	86555499	86559794	+	0	NA	exon (NM_172912, exon 6 of 29)	exon (NM_172912, exon 6 of 29)	8944	NM_172912	244562	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding
1045	chr4	107245243	107249483	+	0	NA	exon (NM_029985, exon 2 of 8)	exon (NM_029985, exon 2 of 8)	6170	NM_029985	77809	Mm.29681	NM_029985	ENSMUSG00000028617	Lrrc42	A930011F22Rik|AA536996	leucine rich repeat containing 42	protein-coding
281	chr11	97701859	97703557	+	0	NA	promoter-TSS (NM_011971)	promoter-TSS (NM_011971)	-726	NM_011971	26446	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding
1025	chr8	84770530	84777859	+	0	NA	5' UTR (NM_001081981, exon 1 of 11)	5' UTR (NM_001081981, exon 1 of 11)	175	NM_001081981	18032	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding
267	chr18	57778589	57781096	+	0	NA	non-coding (NR_152224, exon 1 of 4)	non-coding (NR_152224, exon 1 of 4)	153	NR_152224	100503033	Mm.381112	NR_152224		Gm19519	-	predicted gene, 19519	ncRNA
394	chr2	156861444	156863850	+	0	NA	promoter-TSS (NM_026124)	promoter-TSS (NM_026124)	298	NR_015591	74487	Mm.490465	NR_015591	ENSMUSG00000085741	5430405H02Rik	2610307N17Rik	RIKEN cDNA 5430405H02 gene	ncRNA
236	chr15	51991023	51994234	+	0	NA	promoter-TSS (NM_009009)	promoter-TSS (NM_009009)	-868	NM_009009	19357	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding
432	chr15	101221001	101227541	+	0	NA	promoter-TSS (NM_019518)	promoter-TSS (NM_019518)	64	NM_019518	56149	Mm.276573	NM_019518	ENSMUSG00000000531	Grasp	tamalin	GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein	protein-coding
108	chr15	75920691	75922996	+	0	NA	promoter-TSS (NM_025412)	promoter-TSS (NM_025412)	-283	NM_025412	66194	Mm.250599	NM_025412	ENSMUSG00000022571	Pycrl	1110058B13Rik|2700073G24Rik|Pycr3	pyrroline-5-carboxylate reductase-like	protein-coding
140	chr6	42367710	42374897	+	0	NA	non-coding (NR_045169, exon 2 of 4)	non-coding (NR_045169, exon 2 of 4)	632	NR_045169	72131	Mm.105385	NR_045169	ENSMUSG00000101268	2010310C07Rik	-	RIKEN cDNA 2010310C07 gene	ncRNA
433	chr15	97843679	97846360	+	0	NA	promoter-TSS (NM_001204279)	promoter-TSS (NM_001204279)	-517	NM_001204279	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding
931	chr17	46247005	46249481	+	0	NA	promoter-TSS (NM_009085)	promoter-TSS (NM_009085)	163	NM_145353	28064	Mm.248769	NM_145353	ENSMUSG00000071074	Yipf3	C6orf109|D17Wsu94e|KLIP1	Yip1 domain family, member 3	protein-coding
944	chr8	70896921	70899057	+	0	NA	promoter-TSS (NM_029751)	promoter-TSS (NM_029751)	-546	NM_029751	76808	Mm.379251	NM_029751	ENSMUSG00000045128	Rpl18a	2510019J09Rik	ribosomal protein L18A	protein-coding
697	chr8	18695099	18701245	+	0	NA	exon (NM_007426, exon 7 of 9)	exon (NM_007426, exon 7 of 9)	43390	NM_007426	11601	Mm.439874	NM_007426	ENSMUSG00000031465	Angpt2	Agpt2|Ang-2|Ang2	angiopoietin 2	protein-coding
914	chr3	138123533	138126691	+	0	NA	exon (NM_008642, exon 2 of 18)	exon (NM_008642, exon 2 of 18)	6541	NM_008642	17777	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding
983	chr17	46247005	46249481	+	0	NA	promoter-TSS (NM_009085)	promoter-TSS (NM_009085)	163	NM_145353	28064	Mm.248769	NM_145353	ENSMUSG00000071074	Yipf3	C6orf109|D17Wsu94e|KLIP1	Yip1 domain family, member 3	protein-coding
365	chr2	155944494	155947639	+	0	NA	promoter-TSS (NM_008109)	promoter-TSS (NM_008109)	-699	NM_008109	14563	Mm.4744	NM_008109	ENSMUSG00000038259	Gdf5	BMP-14|Cdmp-1|bp|brp	growth differentiation factor 5	protein-coding
364	chr2	156861444	156863850	+	0	NA	promoter-TSS (NM_026124)	promoter-TSS (NM_026124)	298	NR_015591	74487	Mm.490465	NR_015591	ENSMUSG00000085741	5430405H02Rik	2610307N17Rik	RIKEN cDNA 5430405H02 gene	ncRNA
664	chr6	48531503	48533696	+	0	NA	non-coding (NR_015597, exon 7 of 7)	non-coding (NR_015597, exon 7 of 7)	4875	NR_130985	69432		NR_130985	ENSMUSG00000097716	1700026J14Rik	-	RIKEN cDNA 1700026J14 gene	ncRNA
146	chr6	52756462	52758882	+	0	NA	exon (NM_025816, exon 15 of 18)	exon (NM_025816, exon 15 of 18)	43507	NM_001355596	52440	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding
473	chr11	118072277	118074922	+	0	NA	exon (NM_001167746, exon 47 of 81)	exon (NM_001167746, exon 47 of 81)	55620	NM_001167746	69926	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding
378	chr8	124662836	124664772	+	0	NA	promoter-TSS (NM_175149)	promoter-TSS (NM_175149)	-435	NM_175149	69551	Mm.261920	NM_175149	ENSMUSG00000031983	2310022B05Rik	-	RIKEN cDNA 2310022B05 gene	protein-coding
337	chr11	106821998	106824126	+	0	NA	exon (NM_025481, exon 18 of 19)	exon (NM_025481, exon 18 of 19)	33810	NM_001166685	320162	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding
1138	chr7	126862615	126865802	+	0	NA	exon (NM_172746, exon 4 of 7)	exon (NM_172746, exon 4 of 7)	2236	NM_172746	233876	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding
732	chr8	72432171	72438049	+	0	NA	promoter-TSS (NM_029782)	promoter-TSS (NM_029782)	46	NM_029782	73316	Mm.196315	NM_028500	ENSMUSG00000019732	Calr3	1700031L01Rik|6330586I20Rik|Crt2|cspn	calreticulin 3	protein-coding
64	chr11	103826442	103830506	+	0	NA	exon (NM_008740, exon 18 of 21)	exon (NM_008740, exon 18 of 21)	54299	NM_009521	22415	Mm.159091	NM_009521	ENSMUSG00000000125	Wnt3	Int-4|Wnt-3	wingless-type MMTV integration site family, member 3	protein-coding
117	chr15	97843679	97846360	+	0	NA	promoter-TSS (NM_001204279)	promoter-TSS (NM_001204279)	-517	NM_001204279	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding
265	chr4	117914314	117916215	+	0	NA	promoter-TSS (NM_146152)	promoter-TSS (NM_146152)	-265	NM_146152	230673	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding
922	chr3	87756763	87760181	+	0	NA	5' UTR (NM_001289601, exon 7 of 25)	5' UTR (NM_001289601, exon 7 of 25)	-9849	NM_028971	74485	Mm.474494	NM_028971	ENSMUSG00000023084	Lrrc71	4933430H15Rik	leucine rich repeat containing 71	protein-coding
1005	chr1	175891099	175892979	+	0	NA	exon (NM_012012, exon 7 of 15)	exon (NM_012012, exon 7 of 15)	11261	NM_012012	26909	Mm.283046	NM_012012	ENSMUSG00000039748	Exo1	5730442G03Rik|Msa	exonuclease 1	protein-coding
282	chr11	79674061	79676363	+	0	NA	promoter-TSS (NR_045898)	promoter-TSS (NR_045898)	-126	NR_045898	72218	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA
222	chr2	112130623	112132968	+	0	NA	promoter-TSS (NM_146742)	promoter-TSS (NM_146742)	-980	NM_146742	258737	Mm.377665	NM_146742	ENSMUSG00000109801	Olfr1316	MOR245-1|MOR245-26	olfactory receptor 1316	protein-coding
192	chr3	138413332	138416623	+	0	NA	promoter-TSS (NM_011996)	promoter-TSS (NM_011996)	-520	NM_011996	26876	Mm.158750	NM_011996	ENSMUSG00000037797	Adh4	Adh2	alcohol dehydrogenase 4 (class II), pi polypeptide	protein-coding
319	chr17	32009464	32013015	+	0	NA	exon (NM_028902, exon 5 of 8)	exon (NM_028902, exon 5 of 8)	23269	NM_028902	74377	Mm.75856	NM_028902	ENSMUSG00000002076	Hsf2bp	4932437G14Rik	heat shock transcription factor 2 binding protein	protein-coding
438	chr17	36980317	36982126	+	0	NA	promoter-TSS (NM_029747)	promoter-TSS (NM_029747)	16	NM_029747	76797	Mm.159787	NM_029747	ENSMUSG00000064308	2410137M14Rik	-	RIKEN cDNA 2410137M14 gene	protein-coding
66	chr11	79674061	79676363	+	0	NA	promoter-TSS (NR_045898)	promoter-TSS (NR_045898)	-126	NR_045898	72218	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA
289	chr7	119440833	119450163	+	0	NA	exon (NM_025989, exon 10 of 11)	exon (NM_025989, exon 10 of 11)	13774	NM_025989	67133	Mm.46403	NM_025989	ENSMUSG00000030954	Gp2	2310037I18Rik|AV060639	glycoprotein 2 (zymogen granule membrane)	protein-coding
927	chr9	110433801	110438641	+	0	NA	exon (NM_177771, exon 7 of 10)	exon (NM_177771, exon 7 of 10)	16413	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding
297	chr11	97796579	97800949	+	0	NA	promoter-TSS (NM_010688)	promoter-TSS (NM_010688)	-801	NM_010688	16796	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding
671	chr8	125896215	125899033	+	0	NA	promoter-TSS (NR_155422)	promoter-TSS (NR_155422)	-290	NR_155422	102632990	Mm.429446	NR_155422		A730098A19Rik	-	RIKEN cDNA A730098A19 gene	ncRNA
391	chr2	28914721	28918309	+	0	NA	promoter-TSS (NM_001164186)	promoter-TSS (NM_001164186)	-75	NM_001164186	54422	Mm.21390	NM_019446	ENSMUSG00000026805	Barhl1	Dres115|MBH2	BarH like homeobox 1	protein-coding
340	chr11	97701859	97703557	+	0	NA	promoter-TSS (NM_011971)	promoter-TSS (NM_011971)	-726	NM_011971	26446	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding
226	chr2	167529849	167544829	+	0	NA	promoter-TSS (NM_011427)	promoter-TSS (NM_011427)	-856	NM_011427	20613	Mm.2093	NM_011427	ENSMUSG00000042821	Snai1	Sna|Sna1|Snail|Snail1	snail family zinc finger 1	protein-coding
452	chr4	136890497	136896445	+	0	NA	promoter-TSS (NM_007574)	promoter-TSS (NM_007574)	-557	NM_007574	12262	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding
1022	chr8	69815357	69818197	+	0	NA	exon (NM_198101, exon 16 of 21)	exon (NM_198101, exon 16 of 21)	-5788	NM_020028	53978	Mm.23253	NM_020028	ENSMUSG00000031861	Lpar2	Edg4|IPA2|LPA2	lysophosphatidic acid receptor 2	protein-coding
1046	chr4	94738217	94740177	+	0	NA	promoter-TSS (NM_001290549)	promoter-TSS (NM_001290549)	-92	NM_001290551	21687	Mm.14313	NM_013690	ENSMUSG00000006386	Tek	AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2	TEK receptor tyrosine kinase	protein-coding
583	chr9	56239826	56242592	+	0	NA	exon (NM_172924, exon 5 of 7)	exon (NM_172924, exon 5 of 7)	-80139	NM_019793	56434	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding
797	chr3	90050686	90053568	+	0	NA	promoter-TSS (NM_027500)	promoter-TSS (NM_027500)	353	NM_001165985	74383	Mm.25610	NM_028475	ENSMUSG00000042520	Ubap2l	3110083O19Rik|4932431F02Rik|A430103N23Rik|C77168|Nice-4|mKIAA0144	ubiquitin-associated protein 2-like	protein-coding
881	chr1	174171168	174173975	+	0	NA	promoter-TSS (NM_011465)	promoter-TSS (NM_011465)	-205	NM_011465	20739	Mm.200611	NM_011465	ENSMUSG00000026532	Spta1	AF093576|AI451697|Spna-1|Spna1|ha|ihj|nmf4|sph	spectrin alpha, erythrocytic 1	protein-coding
857	chr5	122712812	122716128	+	0	NA	exon (NM_011026, exon 2 of 12)	exon (NM_011026, exon 2 of 12)	6926	NM_001310718	18438	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding
182	chr4	136890497	136896445	+	0	NA	promoter-TSS (NM_007574)	promoter-TSS (NM_007574)	-557	NM_007574	12262	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding
696	chr8	124662836	124664772	+	0	NA	promoter-TSS (NM_175149)	promoter-TSS (NM_175149)	-435	NM_175149	69551	Mm.261920	NM_175149	ENSMUSG00000031983	2310022B05Rik	-	RIKEN cDNA 2310022B05 gene	protein-coding
517	chr11	97701859	97703557	+	0	NA	promoter-TSS (NM_011971)	promoter-TSS (NM_011971)	-726	NM_011971	26446	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding
1142	chr9	89800411	89804190	+	0	NA	promoter-TSS (NR_029570)	promoter-TSS (NR_029570)	28	NR_029570	387179		NR_029570	ENSMUSG00000065596	Mir184	Mirn184|mir-184|mmu-mir-184	microRNA 184	ncRNA
1118	chr11	97796579	97800949	+	0	NA	promoter-TSS (NM_010688)	promoter-TSS (NM_010688)	-801	NM_010688	16796	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding
351	chr1	133244087	133247478	+	0	NA	promoter-TSS (NM_001160268)	promoter-TSS (NM_001160268)	-315	NM_001160268	240753	Mm.253559	NM_182930	ENSMUSG00000041757	Plekha6	9530028L01Rik|AU042621|Pepp3	pleckstrin homology domain containing, family A member 6	protein-coding
230	chr15	101051337	101057853	+	0	NA	promoter-TSS (NM_001214911)	promoter-TSS (NM_001214911)	-196	NM_001214911	668225	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding
720	chr5	24385356	24388613	+	0	NA	exon (NM_001002897, exon 8 of 14)	exon (NM_001002897, exon 8 of 14)	5159	NM_001002897	213948	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding
1036	chr16	46494187	46499109	+	0	NA	exon (NM_021497, exon 1 of 7)	exon (NM_021497, exon 1 of 7)	319	NM_021496	58998	Mm.40477	NM_021495	ENSMUSG00000022656	Nectin3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113|Pvrl3	nectin cell adhesion molecule 3	protein-coding
479	chr6	48531503	48533696	+	0	NA	non-coding (NR_015597, exon 7 of 7)	non-coding (NR_015597, exon 7 of 7)	4875	NR_130985	69432		NR_130985	ENSMUSG00000097716	1700026J14Rik	-	RIKEN cDNA 1700026J14 gene	ncRNA
758	chr12	104113173	104119165	+	0	NA	exon (NM_001167705, exon 2 of 5)	exon (NM_001167705, exon 2 of 5)	3445	NM_001167705	74069	Mm.159128	NM_028740	ENSMUSG00000041536	Serpina3a	-	serine (or cysteine) peptidase inhibitor, clade A, member 3A	protein-coding
1010	chr10	127553882	127556235	+	0	NA	exon (NM_008512, exon 56 of 89)	exon (NM_008512, exon 56 of 89)	-20499	NM_183297	104080	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding
61	chr11	86543885	86546202	+	0	NA	promoter-TSS (NM_001199047)	promoter-TSS (NM_001199047)	52	NM_019756	56427	Mm.383207	NM_019756	ENSMUSG00000020513	Tubd1	4930550G19Rik|Tubd	tubulin, delta 1	protein-coding
1102	chr8	84976607	84979020	+	0	NA	exon (NM_008416, exon 1 of 1)	exon (NM_008416, exon 1 of 1)	935	NM_008416	16477	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding
686	chr17	37224529	37227100	+	0	NA	exon (NM_146514, exon 1 of 1)	exon (NM_146514, exon 1 of 1)	687	NM_146514	258507	Mm.377543	NM_146514	ENSMUSG00000064121	Olfr96	MOR121-1	olfactory receptor 96	protein-coding
6	chr4	115495412	115498050	+	0	NA	promoter-TSS (NM_007822)	promoter-TSS (NM_007822)	-590	NM_007822	13119	Mm.250901	NM_007822	ENSMUSG00000028715	Cyp4a14	AI314743	cytochrome P450, family 4, subfamily a, polypeptide 14	protein-coding
601	chr11	116237871	116239650	+	0	NA	promoter-TSS (NM_025276)	promoter-TSS (NM_025276)	-669	NM_025276	14027	Mm.293683	NM_025276	ENSMUSG00000034282	Evpl	-	envoplakin	protein-coding
876	chr11	102145422	102147853	+	0	NA	exon (NM_145829, exon 2 of 7)	exon (NM_145829, exon 2 of 7)	1124	NM_145829	217214	Mm.31686	NM_145829	ENSMUSG00000048217	Nags	1700120E20Rik|argA	N-acetylglutamate synthase	protein-coding
960	chr15	75920691	75922996	+	0	NA	promoter-TSS (NM_025412)	promoter-TSS (NM_025412)	-283	NM_025412	66194	Mm.250599	NM_025412	ENSMUSG00000022571	Pycrl	1110058B13Rik|2700073G24Rik|Pycr3	pyrroline-5-carboxylate reductase-like	protein-coding
672	chr8	124662836	124664772	+	0	NA	promoter-TSS (NM_175149)	promoter-TSS (NM_175149)	-435	NM_175149	69551	Mm.261920	NM_175149	ENSMUSG00000031983	2310022B05Rik	-	RIKEN cDNA 2310022B05 gene	protein-coding
263	chr4	115495412	115498050	+	0	NA	promoter-TSS (NM_007822)	promoter-TSS (NM_007822)	-590	NM_007822	13119	Mm.250901	NM_007822	ENSMUSG00000028715	Cyp4a14	AI314743	cytochrome P450, family 4, subfamily a, polypeptide 14	protein-coding
973	chr3	129760549	129766071	+	0	NA	non-coding (NR_040589, exon 5 of 5)	non-coding (NR_040589, exon 5 of 5)	-7988	NM_010113	13645	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding
1114	chr11	54658661	54663037	+	0	NA	exon (NM_175258, exon 19 of 28)	exon (NM_175258, exon 19 of 28)	64703	NM_001252497	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding
742	chr16	97949022	97951717	+	0	NA	exon (NM_001081684, exon 2 of 2)	exon (NM_001081684, exon 2 of 2)	12253	NM_001320385	114565	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding
877	chr11	116237871	116239650	+	0	NA	promoter-TSS (NM_025276)	promoter-TSS (NM_025276)	-669	NM_025276	14027	Mm.293683	NM_025276	ENSMUSG00000034282	Evpl	-	envoplakin	protein-coding
689	chr17	46247005	46249481	+	0	NA	promoter-TSS (NM_009085)	promoter-TSS (NM_009085)	163	NM_145353	28064	Mm.248769	NM_145353	ENSMUSG00000071074	Yipf3	C6orf109|D17Wsu94e|KLIP1	Yip1 domain family, member 3	protein-coding
278	chr11	106821998	106824126	+	0	NA	exon (NM_025481, exon 18 of 19)	exon (NM_025481, exon 18 of 19)	33810	NM_001166685	320162	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding
187	chr6	90634013	90639991	+	0	NA	intron (NM_001037493, intron 6 of 9)	intron (NM_001037493, intron 6 of 9)	17756	NM_001037493	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding
1052	chr6	90634013	90639991	+	0	NA	intron (NM_001037493, intron 6 of 9)	intron (NM_001037493, intron 6 of 9)	17756	NM_001037493	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding
930	chr17	63498316	63501177	+	0	NA	exon (NM_015794, exon 1 of 9)	exon (NM_015794, exon 1 of 9)	834	NM_015794	50758	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding
130	chr11	97701859	97703557	+	0	NA	promoter-TSS (NM_011971)	promoter-TSS (NM_011971)	-726	NM_011971	26446	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding
214	chr11	60348101	60358445	+	0	NA	promoter-TSS (NM_029044)	promoter-TSS (NM_029044)	-107	NM_029044	74665	Mm.133570	NM_029044	ENSMUSG00000056598	Drc3	4930449E07Rik|Lrrc48|m6Bei	dynein regulatory complex subunit 3	protein-coding
78	chr16	46494187	46499109	+	0	NA	exon (NM_021497, exon 1 of 7)	exon (NM_021497, exon 1 of 7)	319	NM_021496	58998	Mm.40477	NM_021495	ENSMUSG00000022656	Nectin3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113|Pvrl3	nectin cell adhesion molecule 3	protein-coding
102	chr15	90566402	90577684	+	0	NA	exon (NM_025815, exon 8 of 20)	exon (NM_025815, exon 8 of 20)	107345	NM_001357979	66871	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding
734	chr8	86555499	86559794	+	0	NA	exon (NM_172912, exon 6 of 29)	exon (NM_172912, exon 6 of 29)	8944	NM_172912	244562	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding
715	chr5	122712812	122716128	+	0	NA	exon (NM_011026, exon 2 of 12)	exon (NM_011026, exon 2 of 12)	6926	NM_001310718	18438	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding
649	chr19	42044084	42046618	+	0	NA	promoter-TSS (NM_026152)	promoter-TSS (NM_026152)	-500	NM_026152	67432	Mm.24196	NM_026152	ENSMUSG00000025176	Hoga1	0610010D20Rik|Dhdpsl|Npl2	4-hydroxy-2-oxoglutarate aldolase 1	protein-coding
235	chr15	97843679	97846360	+	0	NA	promoter-TSS (NM_001204279)	promoter-TSS (NM_001204279)	-517	NM_001204279	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding
824	chr12	86191792	86197838	+	0	NA	non-coding (NR_046081, exon 5 of 5)	non-coding (NR_046081, exon 5 of 5)	25474	NR_046081	328136	Mm.312050	NR_046081	ENSMUSG00000097543	Gm805	-	predicted gene 805	ncRNA
787	chr3	87756763	87760181	+	0	NA	5' UTR (NM_001289601, exon 7 of 25)	5' UTR (NM_001289601, exon 7 of 25)	-9849	NM_028971	74485	Mm.474494	NM_028971	ENSMUSG00000023084	Lrrc71	4933430H15Rik	leucine rich repeat containing 71	protein-coding
1058	chr8	105303514	105310753	+	0	NA	exon (NM_172760, exon 7 of 20)	exon (NM_172760, exon 7 of 20)	1327	NR_029761	723841		NR_029761	ENSMUSG00000070130	Mir328	Mirn328|miR-328|mmu-mir-328	microRNA 328	ncRNA
677	chr7	119440833	119450163	+	0	NA	exon (NM_025989, exon 10 of 11)	exon (NM_025989, exon 10 of 11)	13774	NM_025989	67133	Mm.46403	NM_025989	ENSMUSG00000030954	Gp2	2310037I18Rik|AV060639	glycoprotein 2 (zymogen granule membrane)	protein-coding
937	chr8	105303514	105310753	+	0	NA	exon (NM_172760, exon 7 of 20)	exon (NM_172760, exon 7 of 20)	1327	NR_029761	723841		NR_029761	ENSMUSG00000070130	Mir328	Mirn328|miR-328|mmu-mir-328	microRNA 328	ncRNA
896	chr5	122712812	122716128	+	0	NA	exon (NM_011026, exon 2 of 12)	exon (NM_011026, exon 2 of 12)	6926	NM_001310718	18438	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding
367	chr2	134643646	134646288	+	0	NA	promoter-TSS (NM_029148)	promoter-TSS (NM_029148)	-846	NM_029148	52837	Mm.264096	NM_029148	ENSMUSG00000034723	Tmx4	2810417D04Rik|4930500L08Rik|AI843224|AW046784|D2Bwg1356e|Txndc13|mKIAA1162	thioredoxin-related transmembrane protein 4	protein-coding
320	chr17	36980317	36982126	+	0	NA	promoter-TSS (NM_029747)	promoter-TSS (NM_029747)	16	NM_029747	76797	Mm.159787	NM_029747	ENSMUSG00000064308	2410137M14Rik	-	RIKEN cDNA 2410137M14 gene	protein-coding
62	chr11	97701859	97703557	+	0	NA	promoter-TSS (NM_011971)	promoter-TSS (NM_011971)	-726	NM_011971	26446	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding
657	chr19	23242697	23245111	+	0	NA	exon (NM_001252685, exon 9 of 24)	exon (NM_001252685, exon 9 of 24)	28695	NM_001252685	226026	Mm.23267	NM_153808	ENSMUSG00000024943	Smc5	MLZ-453|SMC-5|Smc5l1|mKIAA0594|mSMC5	structural maintenance of chromosomes 5	protein-coding
593	chr11	106821998	106824126	+	0	NA	exon (NM_025481, exon 18 of 19)	exon (NM_025481, exon 18 of 19)	33810	NM_001166685	320162	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding
629	chr6	119416599	119418389	+	0	NA	promoter-TSS (NM_197985)	promoter-TSS (NM_197985)	34	NM_197985	68465	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding
489	chr11	103826442	103830506	+	0	NA	exon (NM_008740, exon 18 of 21)	exon (NM_008740, exon 18 of 21)	54299	NM_009521	22415	Mm.159091	NM_009521	ENSMUSG00000000125	Wnt3	Int-4|Wnt-3	wingless-type MMTV integration site family, member 3	protein-coding
174	chr8	85230192	85231933	+	0	NA	exon (NM_146859, exon 1 of 1)	exon (NM_146859, exon 1 of 1)	565	NM_146859	258858	Mm.354727	NM_146859	ENSMUSG00000051952	Olfr371	MOR141-3	olfactory receptor 371	protein-coding
17	chr3	89181136	89183897	+	0	NA	promoter-TSS (NM_001014995)	promoter-TSS (NM_001014995)	-627	NM_001014995	68521	Mm.274708	NM_001014995	ENSMUSG00000032657	Fam189b	1110013L07Rik	family with sequence similarity 189, member B	protein-coding
667	chr5	136566925	136568564	+	0	NA	promoter-TSS (NM_009986)	promoter-TSS (NM_009986)	-254	NM_001291234	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding
244	chr15	101221001	101227541	+	0	NA	promoter-TSS (NM_019518)	promoter-TSS (NM_019518)	64	NM_019518	56149	Mm.276573	NM_019518	ENSMUSG00000000531	Grasp	tamalin	GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein	protein-coding
386	chr8	86555499	86559794	+	0	NA	exon (NM_172912, exon 6 of 29)	exon (NM_172912, exon 6 of 29)	8944	NM_172912	244562	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding
25	chr3	87756763	87760181	+	0	NA	5' UTR (NM_001289601, exon 7 of 25)	5' UTR (NM_001289601, exon 7 of 25)	-9849	NM_028971	74485	Mm.474494	NM_028971	ENSMUSG00000023084	Lrrc71	4933430H15Rik	leucine rich repeat containing 71	protein-coding
762	chr1	175891099	175892979	+	0	NA	exon (NM_012012, exon 7 of 15)	exon (NM_012012, exon 7 of 15)	11261	NM_012012	26909	Mm.283046	NM_012012	ENSMUSG00000039748	Exo1	5730442G03Rik|Msa	exonuclease 1	protein-coding
398	chr2	134643646	134646288	+	0	NA	promoter-TSS (NM_029148)	promoter-TSS (NM_029148)	-846	NM_029148	52837	Mm.264096	NM_029148	ENSMUSG00000034723	Tmx4	2810417D04Rik|4930500L08Rik|AI843224|AW046784|D2Bwg1356e|Txndc13|mKIAA1162	thioredoxin-related transmembrane protein 4	protein-coding
480	chr6	52756462	52758882	+	0	NA	exon (NM_025816, exon 15 of 18)	exon (NM_025816, exon 15 of 18)	43507	NM_001355596	52440	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding
53	chr11	103826442	103830506	+	0	NA	exon (NM_008740, exon 18 of 21)	exon (NM_008740, exon 18 of 21)	54299	NM_009521	22415	Mm.159091	NM_009521	ENSMUSG00000000125	Wnt3	Int-4|Wnt-3	wingless-type MMTV integration site family, member 3	protein-coding
1067	chr7	140966520	140969415	+	0	NA	promoter-TSS (NM_001112715)	promoter-TSS (NM_001112715)	-61	NM_001360727	68713	Mm.175661	NM_026820	ENSMUSG00000025491	Ifitm1	1110036C17Rik|DSPA2a|Mil-2|Mil2	interferon induced transmembrane protein 1	protein-coding
252	chr2	167529849	167544829	+	0	NA	promoter-TSS (NM_011427)	promoter-TSS (NM_011427)	-856	NM_011427	20613	Mm.2093	NM_011427	ENSMUSG00000042821	Snai1	Sna|Sna1|Snail|Snail1	snail family zinc finger 1	protein-coding
411	chr8	105303514	105310753	+	0	NA	exon (NM_172760, exon 7 of 20)	exon (NM_172760, exon 7 of 20)	1327	NR_029761	723841		NR_029761	ENSMUSG00000070130	Mir328	Mirn328|miR-328|mmu-mir-328	microRNA 328	ncRNA
634	chr3	138413332	138416623	+	0	NA	promoter-TSS (NM_011996)	promoter-TSS (NM_011996)	-520	NM_011996	26876	Mm.158750	NM_011996	ENSMUSG00000037797	Adh4	Adh2	alcohol dehydrogenase 4 (class II), pi polypeptide	protein-coding
1018	chr8	70896921	70899057	+	0	NA	promoter-TSS (NM_029751)	promoter-TSS (NM_029751)	-546	NM_029751	76808	Mm.379251	NM_029751	ENSMUSG00000045128	Rpl18a	2510019J09Rik	ribosomal protein L18A	protein-coding
123	chr7	140966520	140969415	+	0	NA	promoter-TSS (NM_001112715)	promoter-TSS (NM_001112715)	-61	NM_001360727	68713	Mm.175661	NM_026820	ENSMUSG00000025491	Ifitm1	1110036C17Rik|DSPA2a|Mil-2|Mil2	interferon induced transmembrane protein 1	protein-coding
293	chr7	126862615	126865802	+	0	NA	exon (NM_172746, exon 4 of 7)	exon (NM_172746, exon 4 of 7)	2236	NM_172746	233876	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding
821	chr7	140966520	140969415	+	0	NA	promoter-TSS (NM_001112715)	promoter-TSS (NM_001112715)	-61	NM_001360727	68713	Mm.175661	NM_026820	ENSMUSG00000025491	Ifitm1	1110036C17Rik|DSPA2a|Mil-2|Mil2	interferon induced transmembrane protein 1	protein-coding
34	chr15	101221001	101227541	+	0	NA	promoter-TSS (NM_019518)	promoter-TSS (NM_019518)	64	NM_019518	56149	Mm.276573	NM_019518	ENSMUSG00000000531	Grasp	tamalin	GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein	protein-coding
262	chr4	107245243	107249483	+	0	NA	exon (NM_029985, exon 2 of 8)	exon (NM_029985, exon 2 of 8)	6170	NM_029985	77809	Mm.29681	NM_029985	ENSMUSG00000028617	Lrrc42	A930011F22Rik|AA536996	leucine rich repeat containing 42	protein-coding
885	chr15	76366625	76371079	+	0	NA	promoter-TSS (NM_021555)	promoter-TSS (NM_021555)	-46	NM_021555	59053	Mm.133202	NM_021555	ENSMUSG00000022554	Hgh1	Brp16|D15Ertd741e|Fam203a|MNCb-5873	HGH1 homolog	protein-coding
304	chr11	116237871	116239650	+	0	NA	promoter-TSS (NM_025276)	promoter-TSS (NM_025276)	-669	NM_025276	14027	Mm.293683	NM_025276	ENSMUSG00000034282	Evpl	-	envoplakin	protein-coding
1133	chr7	119440833	119450163	+	0	NA	exon (NM_025989, exon 10 of 11)	exon (NM_025989, exon 10 of 11)	13774	NM_025989	67133	Mm.46403	NM_025989	ENSMUSG00000030954	Gp2	2310037I18Rik|AV060639	glycoprotein 2 (zymogen granule membrane)	protein-coding
385	chr8	69815357	69818197	+	0	NA	exon (NM_198101, exon 16 of 21)	exon (NM_198101, exon 16 of 21)	-5788	NM_020028	53978	Mm.23253	NM_020028	ENSMUSG00000031861	Lpar2	Edg4|IPA2|LPA2	lysophosphatidic acid receptor 2	protein-coding
570	chr4	107245243	107249483	+	0	NA	exon (NM_029985, exon 2 of 8)	exon (NM_029985, exon 2 of 8)	6170	NM_029985	77809	Mm.29681	NM_029985	ENSMUSG00000028617	Lrrc42	A930011F22Rik|AA536996	leucine rich repeat containing 42	protein-coding
144	chr6	38718641	38724382	+	0	NA	exon (NM_001294144, exon 10 of 15)	exon (NM_001294144, exon 10 of 15)	58442	NM_001101507	665180	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding
371	chr18	57778589	57781096	+	0	NA	non-coding (NR_152224, exon 1 of 4)	non-coding (NR_152224, exon 1 of 4)	153	NR_152224	100503033	Mm.381112	NR_152224		Gm19519	-	predicted gene, 19519	ncRNA
600	chr11	79674061	79676363	+	0	NA	promoter-TSS (NR_045898)	promoter-TSS (NR_045898)	-126	NR_045898	72218	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA
498	chr11	70683559	70693049	+	0	NA	promoter-TSS (NM_178116)	promoter-TSS (NM_178116)	-199	NM_001190376	216874	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding
126	chr11	77973655	77981464	+	0	NA	exon (NM_001291225, exon 14 of 16)	exon (NM_001291225, exon 14 of 16)	-5257	NM_174852	268448	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding
786	chr3	86785946	86788725	+	0	NA	exon (NM_001195496, exon 17 of 17)	exon (NM_001195496, exon 17 of 17)	133549	NM_001357460	70762	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding
771	chr3	144951684	144954046	+	0	NA	exon (NM_207208, exon 14 of 14)	exon (NM_207208, exon 14 of 14)	-20336	NM_001033199	99709	Mm.440040	NM_001033199	ENSMUSG00000074195	Clca4b	AI747448|Clca7	chloride channel accessory 4B	protein-coding
871	chr11	106821998	106824126	+	0	NA	exon (NM_025481, exon 18 of 19)	exon (NM_025481, exon 18 of 19)	33810	NM_001166685	320162	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding
582	chr9	121764987	121768002	+	0	NA	exon (NM_001166644, exon 4 of 6)	exon (NM_001166644, exon 4 of 6)	6461	NM_001166644	270210	Mm.473702	NM_001166644	ENSMUSG00000013419	Zfp651	4732420M22Rik|BC030045|R74626	zinc finger protein 651	protein-coding
722	chr3	144951684	144954046	+	0	NA	exon (NM_207208, exon 14 of 14)	exon (NM_207208, exon 14 of 14)	-20336	NM_001033199	99709	Mm.440040	NM_001033199	ENSMUSG00000074195	Clca4b	AI747448|Clca7	chloride channel accessory 4B	protein-coding
1026	chr3	138413332	138416623	+	0	NA	promoter-TSS (NM_011996)	promoter-TSS (NM_011996)	-520	NM_011996	26876	Mm.158750	NM_011996	ENSMUSG00000037797	Adh4	Adh2	alcohol dehydrogenase 4 (class II), pi polypeptide	protein-coding
39	chr12	103896263	103901819	+	0	NA	exon (NM_009245, exon 2 of 5)	exon (NM_009245, exon 2 of 5)	5909	NM_009245	20702	Mm.439692	NM_009245	ENSMUSG00000079015	Serpina1c	Pi3|Pi6|Skalp|Spi1-3|Spi1-6|Wap3	serine (or cysteine) peptidase inhibitor, clade A, member 1C	protein-coding
767	chr1	164144042	164158132	+	0	NA	promoter-TSS (NM_007976)	promoter-TSS (NM_007976)	-748	NM_007976	14067	Mm.12900	NM_007976	ENSMUSG00000026579	F5	AI173222|Cf-5|Cf5	coagulation factor V	protein-coding
638	chr3	129760549	129766071	+	0	NA	non-coding (NR_040589, exon 5 of 5)	non-coding (NR_040589, exon 5 of 5)	-7988	NM_010113	13645	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding
746	chr19	42044084	42046618	+	0	NA	promoter-TSS (NM_026152)	promoter-TSS (NM_026152)	-500	NM_026152	67432	Mm.24196	NM_026152	ENSMUSG00000025176	Hoga1	0610010D20Rik|Dhdpsl|Npl2	4-hydroxy-2-oxoglutarate aldolase 1	protein-coding
911	chr3	80682044	80683563	+	0	NA	non-coding (NR_152148, exon 18 of 18)	non-coding (NR_152148, exon 18 of 18)	120032	NM_013540	14800	Mm.220224	NM_013540	ENSMUSG00000033981	Gria2	GluA2|GluR-B|Glur-2|Glur2|gluR-K2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding
286	chr11	116237871	116239650	+	0	NA	promoter-TSS (NM_025276)	promoter-TSS (NM_025276)	-669	NM_025276	14027	Mm.293683	NM_025276	ENSMUSG00000034282	Evpl	-	envoplakin	protein-coding
122	chr7	119440833	119450163	+	0	NA	exon (NM_025989, exon 10 of 11)	exon (NM_025989, exon 10 of 11)	13774	NM_025989	67133	Mm.46403	NM_025989	ENSMUSG00000030954	Gp2	2310037I18Rik|AV060639	glycoprotein 2 (zymogen granule membrane)	protein-coding
210	chr11	97796579	97800949	+	0	NA	promoter-TSS (NM_010688)	promoter-TSS (NM_010688)	-801	NM_010688	16796	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding
1015	chr8	105825913	105828208	+	0	NA	promoter-TSS (NM_024445)	promoter-TSS (NM_024445)	290	NM_145824	74334	Mm.4206	NM_145824	ENSMUSG00000037415	Ranbp10	4432417N03Rik	RAN binding protein 10	protein-coding
241	chr15	99972974	99974836	+	0	NA	promoter-TSS (NR_028124)	promoter-TSS (NR_028124)	-618	NR_028124	70281	Mm.484037	NR_028124	ENSMUSG00000100084	2310068J16Rik	-	RIKEN cDNA 2310068J16 gene	ncRNA
620	chr19	54044159	54048319	+	0	NA	exon (NM_007417, exon 1 of 1)	exon (NM_007417, exon 1 of 1)	1057	NM_007417	11551	Mm.235195	NM_007417	ENSMUSG00000033717	Adra2a	AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR	adrenergic receptor, alpha 2a	protein-coding
505	chr11	54266620	54268981	+	0	NA	promoter-TSS (NM_010556)	promoter-TSS (NM_010556)	-521	NM_010556	16187	Mm.983	NM_010556	ENSMUSG00000018914	Il3	BPA|Csfmu|HCGF|Il-3|MCGF|PSF	interleukin 3	protein-coding
650	chr19	41585920	41591070	+	0	NA	promoter-TSS (NR_106166)	promoter-TSS (NR_106166)	-156	NR_106166	102465884		NR_106166	ENSMUSG00000098286	Mir8091	Gm27575|mmu-mir-8091	microRNA 8091	ncRNA
783	chr3	89181136	89183897	+	0	NA	promoter-TSS (NM_001014995)	promoter-TSS (NM_001014995)	-627	NM_001014995	68521	Mm.274708	NM_001014995	ENSMUSG00000032657	Fam189b	1110013L07Rik	family with sequence similarity 189, member B	protein-coding
132	chr11	103826442	103830506	+	0	NA	exon (NM_008740, exon 18 of 21)	exon (NM_008740, exon 18 of 21)	54299	NM_009521	22415	Mm.159091	NM_009521	ENSMUSG00000000125	Wnt3	Int-4|Wnt-3	wingless-type MMTV integration site family, member 3	protein-coding
142	chr6	55448891	55454490	+	0	NA	promoter-TSS (NM_007407)	promoter-TSS (NM_007407)	-288	NM_007407	11517	Mm.44245	NM_007407	ENSMUSG00000029778	Adcyap1r1	2900024I10Rik|AI846590|PAC1|PAC1R|PACAP1-R	adenylate cyclase activating polypeptide 1 receptor 1	protein-coding
1097	chr8	105825913	105828208	+	0	NA	promoter-TSS (NM_024445)	promoter-TSS (NM_024445)	290	NM_145824	74334	Mm.4206	NM_145824	ENSMUSG00000037415	Ranbp10	4432417N03Rik	RAN binding protein 10	protein-coding
879	chr1	175891099	175892979	+	0	NA	exon (NM_012012, exon 7 of 15)	exon (NM_012012, exon 7 of 15)	11261	NM_012012	26909	Mm.283046	NM_012012	ENSMUSG00000039748	Exo1	5730442G03Rik|Msa	exonuclease 1	protein-coding
625	chr6	119416599	119418389	+	0	NA	promoter-TSS (NM_197985)	promoter-TSS (NM_197985)	34	NM_197985	68465	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding
269	chr16	46494187	46499109	+	0	NA	exon (NM_021497, exon 1 of 7)	exon (NM_021497, exon 1 of 7)	319	NM_021496	58998	Mm.40477	NM_021495	ENSMUSG00000022656	Nectin3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113|Pvrl3	nectin cell adhesion molecule 3	protein-coding
790	chr3	80682044	80683563	+	0	NA	non-coding (NR_152148, exon 18 of 18)	non-coding (NR_152148, exon 18 of 18)	120032	NM_013540	14800	Mm.220224	NM_013540	ENSMUSG00000033981	Gria2	GluA2|GluR-B|Glur-2|Glur2|gluR-K2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding
673	chr8	105825913	105828208	+	0	NA	promoter-TSS (NM_024445)	promoter-TSS (NM_024445)	290	NM_145824	74334	Mm.4206	NM_145824	ENSMUSG00000037415	Ranbp10	4432417N03Rik	RAN binding protein 10	protein-coding
759	chr8	125896215	125899033	+	0	NA	promoter-TSS (NR_155422)	promoter-TSS (NR_155422)	-290	NR_155422	102632990	Mm.429446	NR_155422		A730098A19Rik	-	RIKEN cDNA A730098A19 gene	ncRNA
100	chr15	51991023	51994234	+	0	NA	promoter-TSS (NM_009009)	promoter-TSS (NM_009009)	-868	NM_009009	19357	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding
502	chr11	86543885	86546202	+	0	NA	promoter-TSS (NM_001199047)	promoter-TSS (NM_001199047)	52	NM_019756	56427	Mm.383207	NM_019756	ENSMUSG00000020513	Tubd1	4930550G19Rik|Tubd	tubulin, delta 1	protein-coding
430	chr15	99972974	99974836	+	0	NA	promoter-TSS (NR_028124)	promoter-TSS (NR_028124)	-618	NR_028124	70281	Mm.484037	NR_028124	ENSMUSG00000100084	2310068J16Rik	-	RIKEN cDNA 2310068J16 gene	ncRNA
388	chr8	84770530	84777859	+	0	NA	5' UTR (NM_001081981, exon 1 of 11)	5' UTR (NM_001081981, exon 1 of 11)	175	NM_001081981	18032	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding
716	chr5	136194430	136205083	+	0	NA	promoter-TSS (NM_025774)	promoter-TSS (NM_025774)	-802	NM_025774	66801	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding
321	chr17	35704202	35706027	+	0	NA	promoter-TSS (NM_007584)	promoter-TSS (NM_007584)	-515	NM_007584	12305	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding
347	chr11	79674061	79676363	+	0	NA	promoter-TSS (NR_045898)	promoter-TSS (NR_045898)	-126	NR_045898	72218	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA
109	chr15	76699844	76702870	+	0	NA	promoter-TSS (NM_027122)	promoter-TSS (NM_027122)	-185	NM_027122	69572	Mm.34920	NM_027122	ENSMUSG00000019080	Mfsd3	2310010G13Rik	major facilitator superfamily domain containing 3	protein-coding
43	chr11	72398736	72401203	+	0	NA	exon (NM_177776, exon 7 of 8)	exon (NM_177776, exon 7 of 8)	11213	NR_105756	102465172		NR_105756	ENSMUSG00000098658	Mir6338	Gm27678|mmu-mir-6338	microRNA 6338	ncRNA
162	chr1	155082069	155085861	+	0	NA	promoter-TSS (NR_151545)	promoter-TSS (NR_151545)	-701	NR_151545	671336	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA
184	chr4	86340939	86345226	+	0	NA	exon (NM_029967, exon 18 of 28)	exon (NM_029967, exon 18 of 28)	215221	NM_001081096	75811	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding
30	chr15	85814962	85818572	+	0	NA	exon (NM_011105, exon 1 of 1)	exon (NM_011105, exon 1 of 1)	4966	NM_011105	18766	Mm.89965	NM_011105	ENSMUSG00000052496	Pkdrej	-	polycystin (PKD) family receptor for egg jelly	protein-coding
199	chr3	144951684	144954046	+	0	NA	exon (NM_207208, exon 14 of 14)	exon (NM_207208, exon 14 of 14)	-20336	NM_001033199	99709	Mm.440040	NM_001033199	ENSMUSG00000074195	Clca4b	AI747448|Clca7	chloride channel accessory 4B	protein-coding
177	chr8	84976607	84979020	+	0	NA	exon (NM_008416, exon 1 of 1)	exon (NM_008416, exon 1 of 1)	935	NM_008416	16477	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding
982	chr17	63498316	63501177	+	0	NA	exon (NM_015794, exon 1 of 9)	exon (NM_015794, exon 1 of 9)	834	NM_015794	50758	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding
119	chr7	104011850	104015386	+	0	NA	promoter-TSS (NM_147084)	promoter-TSS (NM_147084)	-918	NM_147084	259088	Mm.422750	NM_147084	ENSMUSG00000066263	Olfr639	MOR12-1	olfactory receptor 639	protein-coding
611	chr17	29142594	29146388	+	0	NA	exon (NM_001002786, exon 4 of 8)	exon (NM_001002786, exon 4 of 8)	9435	NM_001002786	442827	Mm.440341	NM_001002786	ENSMUSG00000064147	Rab44	9830134C10Rik	RAB44, member RAS oncogene family	protein-coding
574	chr4	136890497	136896445	+	0	NA	promoter-TSS (NM_007574)	promoter-TSS (NM_007574)	-557	NM_007574	12262	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding
465	chr5	134930717	134933866	+	0	NA	promoter-TSS (NM_024479)	promoter-TSS (NM_024479)	-82	NM_001359538	79565	Mm.34235	NM_024479	ENSMUSG00000040557	Mettl27	AW492986|BC002286|Wbscr27	methyltransferase like 27	protein-coding
359	chr1	90200145	90206585	+	0	NA	promoter-TSS (NM_007722)	promoter-TSS (NM_007722)	-615	NM_001271607	12778	Mm.6522	NM_007722	ENSMUSG00000044337	Ackr3	AW541270|CXC-R7|CXCR-7|Cmkor1|Cxcr7|RDC-1|Rdc1	atypical chemokine receptor 3	protein-coding
448	chr4	86310442	86333833	+	0	NA	exon (NM_029967, exon 15 of 28)	exon (NM_029967, exon 15 of 28)	236166	NM_001081096	75811	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding
232	chr15	99972974	99974836	+	0	NA	promoter-TSS (NR_028124)	promoter-TSS (NR_028124)	-618	NR_028124	70281	Mm.484037	NR_028124	ENSMUSG00000100084	2310068J16Rik	-	RIKEN cDNA 2310068J16 gene	ncRNA
830	chr7	140966520	140969415	+	0	NA	promoter-TSS (NM_001112715)	promoter-TSS (NM_001112715)	-61	NM_001360727	68713	Mm.175661	NM_026820	ENSMUSG00000025491	Ifitm1	1110036C17Rik|DSPA2a|Mil-2|Mil2	interferon induced transmembrane protein 1	protein-coding
956	chr15	36102423	36105170	+	0	NA	exon (NM_001195748, exon 6 of 28)	exon (NM_001195748, exon 6 of 28)	36604	NM_001195748	626596	Mm.321798	NM_001195748	ENSMUSG00000037627	Rgs22	-	regulator of G-protein signalling 22	protein-coding
962	chr15	101221001	101227541	+	0	NA	promoter-TSS (NM_019518)	promoter-TSS (NM_019518)	64	NM_019518	56149	Mm.276573	NM_019518	ENSMUSG00000000531	Grasp	tamalin	GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein	protein-coding
967	chr19	45000252	45003291	+	0	NA	exon (NM_011976, exon 15 of 15)	exon (NM_011976, exon 15 of 15)	-3892	NM_001348254	226153	Mm.105585	NM_153796	ENSMUSG00000025209	Twnk	D19Ertd626e|PEO|Peo1|Twinl	twinkle mtDNA helicase	protein-coding
589	chr11	72398736	72401203	+	0	NA	exon (NM_177776, exon 7 of 8)	exon (NM_177776, exon 7 of 8)	11213	NR_105756	102465172		NR_105756	ENSMUSG00000098658	Mir6338	Gm27678|mmu-mir-6338	microRNA 6338	ncRNA
283	chr11	103826442	103830506	+	0	NA	exon (NM_008740, exon 18 of 21)	exon (NM_008740, exon 18 of 21)	54299	NM_009521	22415	Mm.159091	NM_009521	ENSMUSG00000000125	Wnt3	Int-4|Wnt-3	wingless-type MMTV integration site family, member 3	protein-coding
273	chr16	55933303	55936430	+	0	NA	promoter-TSS (NM_028815)	promoter-TSS (NM_028815)	-18	NM_001159366	74201	Mm.178427	NM_028815	ENSMUSG00000022604	Cep97	2810403B08Rik|4932439K18Rik|AA437768|E130116N02Rik|Lrriq2	centrosomal protein 97	protein-coding
968	chr3	138413332	138416623	+	0	NA	promoter-TSS (NM_011996)	promoter-TSS (NM_011996)	-520	NM_011996	26876	Mm.158750	NM_011996	ENSMUSG00000037797	Adh4	Adh2	alcohol dehydrogenase 4 (class II), pi polypeptide	protein-coding
310	chr2	167529849	167544829	+	0	NA	promoter-TSS (NM_011427)	promoter-TSS (NM_011427)	-856	NM_011427	20613	Mm.2093	NM_011427	ENSMUSG00000042821	Snai1	Sna|Sna1|Snail|Snail1	snail family zinc finger 1	protein-coding
148	chr11	72398736	72401203	+	0	NA	exon (NM_177776, exon 7 of 8)	exon (NM_177776, exon 7 of 8)	11213	NR_105756	102465172		NR_105756	ENSMUSG00000098658	Mir6338	Gm27678|mmu-mir-6338	microRNA 6338	ncRNA
687	chr17	30203896	30214645	+	0	NA	non-coding (NR_151442, exon 4 of 4)	non-coding (NR_151442, exon 4 of 4)	186910	NR_030688	623169	Mm.440508	NR_030688		Gm6402	EG623169	ribosomal protein S17 pseudogene	pseudo
429	chr15	85814962	85818572	+	0	NA	exon (NM_011105, exon 1 of 1)	exon (NM_011105, exon 1 of 1)	4966	NM_011105	18766	Mm.89965	NM_011105	ENSMUSG00000052496	Pkdrej	-	polycystin (PKD) family receptor for egg jelly	protein-coding
710	chr9	121764987	121768002	+	0	NA	exon (NM_001166644, exon 4 of 6)	exon (NM_001166644, exon 4 of 6)	6461	NM_001166644	270210	Mm.473702	NM_001166644	ENSMUSG00000013419	Zfp651	4732420M22Rik|BC030045|R74626	zinc finger protein 651	protein-coding
356	chr1	193104203	193105972	+	0	NA	non-coding (NR_151719, exon 12 of 12)	non-coding (NR_151719, exon 12 of 12)	25164	NM_145415	215193	Mm.173758	NM_145415	ENSMUSG00000016181	Diexf	AA408296|AW045375|Def	digestive organ expansion factor homolog (zebrafish)	protein-coding
349	chr11	118072277	118074922	+	0	NA	exon (NM_001167746, exon 47 of 81)	exon (NM_001167746, exon 47 of 81)	55620	NM_001167746	69926	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding
692	chr17	35704202	35706027	+	0	NA	promoter-TSS (NM_007584)	promoter-TSS (NM_007584)	-515	NM_007584	12305	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding
621	chr8	125896215	125899033	+	0	NA	promoter-TSS (NR_155422)	promoter-TSS (NR_155422)	-290	NR_155422	102632990	Mm.429446	NR_155422		A730098A19Rik	-	RIKEN cDNA A730098A19 gene	ncRNA
327	chr17	63498316	63501177	+	0	NA	exon (NM_015794, exon 1 of 9)	exon (NM_015794, exon 1 of 9)	834	NM_015794	50758	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding
7	chr4	136890497	136896445	+	0	NA	promoter-TSS (NM_007574)	promoter-TSS (NM_007574)	-557	NM_007574	12262	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding
718	chr5	134930717	134933866	+	0	NA	promoter-TSS (NM_024479)	promoter-TSS (NM_024479)	-82	NM_001359538	79565	Mm.34235	NM_024479	ENSMUSG00000040557	Mettl27	AW492986|BC002286|Wbscr27	methyltransferase like 27	protein-coding
904	chr5	122706371	122708458	+	0	NA	promoter-TSS (NM_011026)	promoter-TSS (NM_011026)	-130	NM_011026	18438	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding
23	chr3	55170557	55173390	+	0	NA	non-coding (NR_110776, exon 9 of 9)	non-coding (NR_110776, exon 9 of 9)	-10071	NM_028937	74434	Mm.25514	NM_028937	ENSMUSG00000027794	Sohlh2	4933406N12Rik|AI413378|Sosf2	spermatogenesis and oogenesis specific basic helix-loop-helix 2	protein-coding
190	chr10	87964007	87968357	+	0	NA	promoter-TSS (NR_000040)	promoter-TSS (NR_000040)	-489	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo
272	chr16	10312485	10315249	+	0	NA	5' UTR (NM_007929, exon 1 of 5)	5' UTR (NM_007929, exon 1 of 5)	101	NM_007929	13731	Mm.246009	NM_007929	ENSMUSG00000022505	Emp2	XMP	epithelial membrane protein 2	protein-coding
276	chr11	72398736	72401203	+	0	NA	exon (NM_177776, exon 7 of 8)	exon (NM_177776, exon 7 of 8)	11213	NR_105756	102465172		NR_105756	ENSMUSG00000098658	Mir6338	Gm27678|mmu-mir-6338	microRNA 6338	ncRNA
46	chr11	72398736	72401203	+	0	NA	exon (NM_177776, exon 7 of 8)	exon (NM_177776, exon 7 of 8)	11213	NR_105756	102465172		NR_105756	ENSMUSG00000098658	Mir6338	Gm27678|mmu-mir-6338	microRNA 6338	ncRNA
999	chr3	129760549	129766071	+	0	NA	non-coding (NR_040589, exon 5 of 5)	non-coding (NR_040589, exon 5 of 5)	-7988	NM_010113	13645	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding
1134	chr7	108159608	108161313	+	0	NA	promoter-TSS (NM_001011810)	promoter-TSS (NM_001011810)	-589	NM_001011810	258041	Mm.377336	NM_001011810	ENSMUSG00000108995	Olfr485	MOR204-30P	olfactory receptor 485	protein-coding
514	chr11	106821998	106824126	+	0	NA	exon (NM_025481, exon 18 of 19)	exon (NM_025481, exon 18 of 19)	33810	NM_001166685	320162	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding
88	chr15	75920691	75922996	+	0	NA	promoter-TSS (NM_025412)	promoter-TSS (NM_025412)	-283	NM_025412	66194	Mm.250599	NM_025412	ENSMUSG00000022571	Pycrl	1110058B13Rik|2700073G24Rik|Pycr3	pyrroline-5-carboxylate reductase-like	protein-coding
869	chr6	48531503	48533696	+	0	NA	non-coding (NR_015597, exon 7 of 7)	non-coding (NR_015597, exon 7 of 7)	4875	NR_130985	69432		NR_130985	ENSMUSG00000097716	1700026J14Rik	-	RIKEN cDNA 1700026J14 gene	ncRNA
52	chr11	60348101	60358445	+	0	NA	promoter-TSS (NM_029044)	promoter-TSS (NM_029044)	-107	NM_029044	74665	Mm.133570	NM_029044	ENSMUSG00000056598	Drc3	4930449E07Rik|Lrrc48|m6Bei	dynein regulatory complex subunit 3	protein-coding
136	chr11	118072277	118074922	+	0	NA	exon (NM_001167746, exon 47 of 81)	exon (NM_001167746, exon 47 of 81)	55620	NM_001167746	69926	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding
42	chr11	77973655	77981464	+	0	NA	exon (NM_001291225, exon 14 of 16)	exon (NM_001291225, exon 14 of 16)	-5257	NM_174852	268448	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding
83	chr15	76366625	76371079	+	0	NA	promoter-TSS (NM_021555)	promoter-TSS (NM_021555)	-46	NM_021555	59053	Mm.133202	NM_021555	ENSMUSG00000022554	Hgh1	Brp16|D15Ertd741e|Fam203a|MNCb-5873	HGH1 homolog	protein-coding
1089	chr3	144951684	144954046	+	0	NA	exon (NM_207208, exon 14 of 14)	exon (NM_207208, exon 14 of 14)	-20336	NM_001033199	99709	Mm.440040	NM_001033199	ENSMUSG00000074195	Clca4b	AI747448|Clca7	chloride channel accessory 4B	protein-coding
1082	chr19	45000252	45003291	+	0	NA	exon (NM_011976, exon 15 of 15)	exon (NM_011976, exon 15 of 15)	-3892	NM_001348254	226153	Mm.105585	NM_153796	ENSMUSG00000025209	Twnk	D19Ertd626e|PEO|Peo1|Twinl	twinkle mtDNA helicase	protein-coding
578	chr6	119416599	119418389	+	0	NA	promoter-TSS (NM_197985)	promoter-TSS (NM_197985)	34	NM_197985	68465	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding
446	chr12	104113173	104119165	+	0	NA	exon (NM_001167705, exon 2 of 5)	exon (NM_001167705, exon 2 of 5)	3445	NM_001167705	74069	Mm.159128	NM_028740	ENSMUSG00000041536	Serpina3a	-	serine (or cysteine) peptidase inhibitor, clade A, member 3A	protein-coding
396	chr2	155944494	155947639	+	0	NA	promoter-TSS (NM_008109)	promoter-TSS (NM_008109)	-699	NM_008109	14563	Mm.4744	NM_008109	ENSMUSG00000038259	Gdf5	BMP-14|Cdmp-1|bp|brp	growth differentiation factor 5	protein-coding
588	chr11	77973655	77981464	+	0	NA	exon (NM_001291225, exon 14 of 16)	exon (NM_001291225, exon 14 of 16)	-5257	NM_174852	268448	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding
736	chr8	84770530	84777859	+	0	NA	5' UTR (NM_001081981, exon 1 of 11)	5' UTR (NM_001081981, exon 1 of 11)	175	NM_001081981	18032	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding
1111	chr11	77973655	77981464	+	0	NA	exon (NM_001291225, exon 14 of 16)	exon (NM_001291225, exon 14 of 16)	-5257	NM_174852	268448	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding
138	chr6	119416599	119418389	+	0	NA	promoter-TSS (NM_197985)	promoter-TSS (NM_197985)	34	NM_197985	68465	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding
175	chr8	69815357	69818197	+	0	NA	exon (NM_198101, exon 16 of 21)	exon (NM_198101, exon 16 of 21)	-5788	NM_020028	53978	Mm.23253	NM_020028	ENSMUSG00000031861	Lpar2	Edg4|IPA2|LPA2	lysophosphatidic acid receptor 2	protein-coding
172	chr8	109774061	109781273	+	0	NA	promoter-TSS (NM_009677)	promoter-TSS (NM_009677)	-916	NM_001301211	11765	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding
662	chr6	83977943	83980064	+	0	NA	exon (NM_008717, exon 24 of 27)	exon (NM_008717, exon 24 of 27)	-29595	NM_001077694	26903	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding
131	chr11	79674061	79676363	+	0	NA	promoter-TSS (NR_045898)	promoter-TSS (NR_045898)	-126	NR_045898	72218	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA
1128	chr11	118072277	118074922	+	0	NA	exon (NM_001167746, exon 47 of 81)	exon (NM_001167746, exon 47 of 81)	55620	NM_001167746	69926	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding
159	chr11	116237871	116239650	+	0	NA	promoter-TSS (NM_025276)	promoter-TSS (NM_025276)	-669	NM_025276	14027	Mm.293683	NM_025276	ENSMUSG00000034282	Evpl	-	envoplakin	protein-coding
631	chr6	83977943	83980064	+	0	NA	exon (NM_008717, exon 24 of 27)	exon (NM_008717, exon 24 of 27)	-29595	NM_001077694	26903	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding
804	chr11	106821998	106824126	+	0	NA	exon (NM_025481, exon 18 of 19)	exon (NM_025481, exon 18 of 19)	33810	NM_001166685	320162	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding
434	chr17	37224529	37227100	+	0	NA	exon (NM_146514, exon 1 of 1)	exon (NM_146514, exon 1 of 1)	687	NM_146514	258507	Mm.377543	NM_146514	ENSMUSG00000064121	Olfr96	MOR121-1	olfactory receptor 96	protein-coding
380	chr8	105303514	105310753	+	0	NA	exon (NM_172760, exon 7 of 20)	exon (NM_172760, exon 7 of 20)	1327	NR_029761	723841		NR_029761	ENSMUSG00000070130	Mir328	Mirn328|miR-328|mmu-mir-328	microRNA 328	ncRNA
1050	chr6	56796835	56800563	+	0	NA	promoter-TSS (NM_145958)	promoter-TSS (NM_145958)	-886	NM_001362213	210973	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding
360	chr1	93822921	93825827	+	0	NA	promoter-TSS (NM_178882)	promoter-TSS (NM_178882)	-866	NM_178882	98314	Mm.383401	NM_178882	ENSMUSG00000073609	D2hgdh	AA408776|AA408778|AI325464	D-2-hydroxyglutarate dehydrogenase	protein-coding
525	chr3	144951684	144954046	+	0	NA	exon (NM_207208, exon 14 of 14)	exon (NM_207208, exon 14 of 14)	-20336	NM_001033199	99709	Mm.440040	NM_001033199	ENSMUSG00000074195	Clca4b	AI747448|Clca7	chloride channel accessory 4B	protein-coding
1127	chr11	116237871	116239650	+	0	NA	promoter-TSS (NM_025276)	promoter-TSS (NM_025276)	-669	NM_025276	14027	Mm.293683	NM_025276	ENSMUSG00000034282	Evpl	-	envoplakin	protein-coding
585	chr9	110433801	110438641	+	0	NA	exon (NM_177771, exon 7 of 10)	exon (NM_177771, exon 7 of 10)	16413	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding
447	chr6	119416599	119418389	+	0	NA	promoter-TSS (NM_197985)	promoter-TSS (NM_197985)	34	NM_197985	68465	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding
1019	chr8	109774061	109781273	+	0	NA	promoter-TSS (NM_009677)	promoter-TSS (NM_009677)	-916	NM_001301211	11765	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding
101	chr15	34675710	34682507	+	0	NA	promoter-TSS (NM_145469)	promoter-TSS (NM_145469)	-402	NM_145469	223473	Mm.258402	NM_145469	ENSMUSG00000038879	Nipal2	9330161F08Rik|Npal2	NIPA-like domain containing 2	protein-coding
1014	chr8	18695099	18701245	+	0	NA	exon (NM_007426, exon 7 of 9)	exon (NM_007426, exon 7 of 9)	43390	NM_007426	11601	Mm.439874	NM_007426	ENSMUSG00000031465	Angpt2	Agpt2|Ang-2|Ang2	angiopoietin 2	protein-coding
94	chr19	42099763	42101817	+	0	NA	exon (NM_145501, exon 2 of 9)	exon (NM_145501, exon 2 of 9)	10355	NM_145501	84095	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding
802	chr3	87756763	87760181	+	0	NA	5' UTR (NM_001289601, exon 7 of 25)	5' UTR (NM_001289601, exon 7 of 25)	-9849	NM_028971	74485	Mm.474494	NM_028971	ENSMUSG00000023084	Lrrc71	4933430H15Rik	leucine rich repeat containing 71	protein-coding
1042	chr1	175891099	175892979	+	0	NA	exon (NM_012012, exon 7 of 15)	exon (NM_012012, exon 7 of 15)	11261	NM_012012	26909	Mm.283046	NM_012012	ENSMUSG00000039748	Exo1	5730442G03Rik|Msa	exonuclease 1	protein-coding
428	chr15	101051337	101057853	+	0	NA	promoter-TSS (NM_001214911)	promoter-TSS (NM_001214911)	-196	NM_001214911	668225	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding
250	chr2	156861444	156863850	+	0	NA	promoter-TSS (NM_026124)	promoter-TSS (NM_026124)	298	NR_015591	74487	Mm.490465	NR_015591	ENSMUSG00000085741	5430405H02Rik	2610307N17Rik	RIKEN cDNA 5430405H02 gene	ncRNA
900	chr5	136566925	136568564	+	0	NA	promoter-TSS (NM_009986)	promoter-TSS (NM_009986)	-254	NM_001291234	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding
366	chr2	167529849	167544829	+	0	NA	promoter-TSS (NM_011427)	promoter-TSS (NM_011427)	-856	NM_011427	20613	Mm.2093	NM_011427	ENSMUSG00000042821	Snai1	Sna|Sna1|Snail|Snail1	snail family zinc finger 1	protein-coding
395	chr2	93848895	93852828	+	0	NA	promoter-TSS (NM_001290782)	promoter-TSS (NM_001290782)	-918	NM_001290782	329470	Mm.486910	NM_183220	ENSMUSG00000040272	Accs	2610203E10Rik|Phacs	1-aminocyclopropane-1-carboxylate synthase (non-functional)	protein-coding
1092	chr4	115495412	115498050	+	0	NA	promoter-TSS (NM_007822)	promoter-TSS (NM_007822)	-590	NM_007822	13119	Mm.250901	NM_007822	ENSMUSG00000028715	Cyp4a14	AI314743	cytochrome P450, family 4, subfamily a, polypeptide 14	protein-coding
807	chr11	118072277	118074922	+	0	NA	exon (NM_001167746, exon 47 of 81)	exon (NM_001167746, exon 47 of 81)	55620	NM_001167746	69926	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding
519	chr11	102145422	102147853	+	0	NA	exon (NM_145829, exon 2 of 7)	exon (NM_145829, exon 2 of 7)	1124	NM_145829	217214	Mm.31686	NM_145829	ENSMUSG00000048217	Nags	1700120E20Rik|argA	N-acetylglutamate synthase	protein-coding
776	chr3	90050686	90053568	+	0	NA	promoter-TSS (NM_027500)	promoter-TSS (NM_027500)	353	NM_001165985	74383	Mm.25610	NM_028475	ENSMUSG00000042520	Ubap2l	3110083O19Rik|4932431F02Rik|A430103N23Rik|C77168|Nice-4|mKIAA0144	ubiquitin-associated protein 2-like	protein-coding
788	chr3	95158642	95161842	+	0	NA	promoter-TSS (NM_001272024)	promoter-TSS (NM_001272024)	-178	NM_001272024	20360	Mm.23662	NM_011351	ENSMUSG00000038777	Sema6c	Semay|mKIAA1869	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	protein-coding
853	chr8	84976607	84979020	+	0	NA	exon (NM_008416, exon 1 of 1)	exon (NM_008416, exon 1 of 1)	935	NM_008416	16477	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding
846	chr8	125896215	125899033	+	0	NA	promoter-TSS (NR_155422)	promoter-TSS (NR_155422)	-290	NR_155422	102632990	Mm.429446	NR_155422		A730098A19Rik	-	RIKEN cDNA A730098A19 gene	ncRNA
37	chr2	155944494	155947639	+	0	NA	promoter-TSS (NM_008109)	promoter-TSS (NM_008109)	-699	NM_008109	14563	Mm.4744	NM_008109	ENSMUSG00000038259	Gdf5	BMP-14|Cdmp-1|bp|brp	growth differentiation factor 5	protein-coding
120	chr7	119440833	119450163	+	0	NA	exon (NM_025989, exon 10 of 11)	exon (NM_025989, exon 10 of 11)	13774	NM_025989	67133	Mm.46403	NM_025989	ENSMUSG00000030954	Gp2	2310037I18Rik|AV060639	glycoprotein 2 (zymogen granule membrane)	protein-coding
994	chr8	105303514	105310753	+	0	NA	exon (NM_172760, exon 7 of 20)	exon (NM_172760, exon 7 of 20)	1327	NR_029761	723841		NR_029761	ENSMUSG00000070130	Mir328	Mirn328|miR-328|mmu-mir-328	microRNA 328	ncRNA
149	chr11	70683559	70693049	+	0	NA	promoter-TSS (NM_178116)	promoter-TSS (NM_178116)	-199	NM_001190376	216874	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding
1011	chr8	125896215	125899033	+	0	NA	promoter-TSS (NR_155422)	promoter-TSS (NR_155422)	-290	NR_155422	102632990	Mm.429446	NR_155422		A730098A19Rik	-	RIKEN cDNA A730098A19 gene	ncRNA
535	chr19	23242697	23245111	+	0	NA	exon (NM_001252685, exon 9 of 24)	exon (NM_001252685, exon 9 of 24)	28695	NM_001252685	226026	Mm.23267	NM_153808	ENSMUSG00000024943	Smc5	MLZ-453|SMC-5|Smc5l1|mKIAA0594|mSMC5	structural maintenance of chromosomes 5	protein-coding
1047	chr4	115495412	115498050	+	0	NA	promoter-TSS (NM_007822)	promoter-TSS (NM_007822)	-590	NM_007822	13119	Mm.250901	NM_007822	ENSMUSG00000028715	Cyp4a14	AI314743	cytochrome P450, family 4, subfamily a, polypeptide 14	protein-coding
785	chr3	144951684	144954046	+	0	NA	exon (NM_207208, exon 14 of 14)	exon (NM_207208, exon 14 of 14)	-20336	NM_001033199	99709	Mm.440040	NM_001033199	ENSMUSG00000074195	Clca4b	AI747448|Clca7	chloride channel accessory 4B	protein-coding
1077	chr19	42044084	42046618	+	0	NA	promoter-TSS (NM_026152)	promoter-TSS (NM_026152)	-500	NM_026152	67432	Mm.24196	NM_026152	ENSMUSG00000025176	Hoga1	0610010D20Rik|Dhdpsl|Npl2	4-hydroxy-2-oxoglutarate aldolase 1	protein-coding
147	chr11	77973655	77981464	+	0	NA	exon (NM_001291225, exon 14 of 16)	exon (NM_001291225, exon 14 of 16)	-5257	NM_174852	268448	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding
920	chr3	55170557	55173390	+	0	NA	non-coding (NR_110776, exon 9 of 9)	non-coding (NR_110776, exon 9 of 9)	-10071	NM_028937	74434	Mm.25514	NM_028937	ENSMUSG00000027794	Sohlh2	4933406N12Rik|AI413378|Sosf2	spermatogenesis and oogenesis specific basic helix-loop-helix 2	protein-coding
533	chr19	42099763	42101817	+	0	NA	exon (NM_145501, exon 2 of 9)	exon (NM_145501, exon 2 of 9)	10355	NM_145501	84095	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding
704	chr8	69815357	69818197	+	0	NA	exon (NM_198101, exon 16 of 21)	exon (NM_198101, exon 16 of 21)	-5788	NM_020028	53978	Mm.23253	NM_020028	ENSMUSG00000031861	Lpar2	Edg4|IPA2|LPA2	lysophosphatidic acid receptor 2	protein-coding
792	chr3	65185156	65189140	+	0	NA	promoter-TSS (NM_001289450)	promoter-TSS (NM_001289450)	-955	NM_001289450	16497	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding
814	chr2	154379486	154382377	+	0	NA	exon (NM_009228, exon 4 of 8)	exon (NM_009228, exon 4 of 8)	-8212	NM_025876	66971	Mm.289427	NM_025876	ENSMUSG00000027487	Cdk5rap1	2310066P17Rik	CDK5 regulatory subunit associated protein 1	protein-coding
607	chr17	37224529	37227100	+	0	NA	exon (NM_146514, exon 1 of 1)	exon (NM_146514, exon 1 of 1)	687	NM_146514	258507	Mm.377543	NM_146514	ENSMUSG00000064121	Olfr96	MOR121-1	olfactory receptor 96	protein-coding
382	chr8	109774061	109781273	+	0	NA	promoter-TSS (NM_009677)	promoter-TSS (NM_009677)	-916	NM_001301211	11765	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding
95	chr19	45000252	45003291	+	0	NA	exon (NM_011976, exon 15 of 15)	exon (NM_011976, exon 15 of 15)	-3892	NM_001348254	226153	Mm.105585	NM_153796	ENSMUSG00000025209	Twnk	D19Ertd626e|PEO|Peo1|Twinl	twinkle mtDNA helicase	protein-coding
538	chr12	104113173	104119165	+	0	NA	exon (NM_001167705, exon 2 of 5)	exon (NM_001167705, exon 2 of 5)	3445	NM_001167705	74069	Mm.159128	NM_028740	ENSMUSG00000041536	Serpina3a	-	serine (or cysteine) peptidase inhibitor, clade A, member 3A	protein-coding
963	chr15	51991023	51994234	+	0	NA	promoter-TSS (NM_009009)	promoter-TSS (NM_009009)	-868	NM_009009	19357	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding
176	chr8	86555499	86559794	+	0	NA	exon (NM_172912, exon 6 of 29)	exon (NM_172912, exon 6 of 29)	8944	NM_172912	244562	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding
977	chr3	144951684	144954046	+	0	NA	exon (NM_207208, exon 14 of 14)	exon (NM_207208, exon 14 of 14)	-20336	NM_001033199	99709	Mm.440040	NM_001033199	ENSMUSG00000074195	Clca4b	AI747448|Clca7	chloride channel accessory 4B	protein-coding
44	chr11	69070545	69074551	+	0	NA	promoter-TSS (NR_028566)	promoter-TSS (NR_028566)	-878	NR_028566	100216530	Mm.453052	NR_028566	ENSMUSG00000064899	Snord118	MBI-34	small nucleolar RNA, C/D box 118	snoRNA
110	chr15	101221001	101227541	+	0	NA	promoter-TSS (NM_019518)	promoter-TSS (NM_019518)	64	NM_019518	56149	Mm.276573	NM_019518	ENSMUSG00000000531	Grasp	tamalin	GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein	protein-coding
755	chr19	31663869	31665600	+	0	NA	promoter-TSS (NM_011160)	promoter-TSS (NM_011160)	-364	NM_011160	19091	Mm.381170	NM_011160	ENSMUSG00000052920	Prkg1	AW125416|CGKI|Gm19690|Prkg1b|Prkgr1b	protein kinase, cGMP-dependent, type I	protein-coding
554	chr11	69070545	69074551	+	0	NA	promoter-TSS (NR_028566)	promoter-TSS (NR_028566)	-878	NR_028566	100216530	Mm.453052	NR_028566	ENSMUSG00000064899	Snord118	MBI-34	small nucleolar RNA, C/D box 118	snoRNA
302	chr11	102145422	102147853	+	0	NA	exon (NM_145829, exon 2 of 7)	exon (NM_145829, exon 2 of 7)	1124	NM_145829	217214	Mm.31686	NM_145829	ENSMUSG00000048217	Nags	1700120E20Rik|argA	N-acetylglutamate synthase	protein-coding
369	chr15	101051337	101057853	+	0	NA	promoter-TSS (NM_001214911)	promoter-TSS (NM_001214911)	-196	NM_001214911	668225	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding
864	chr6	119416599	119418389	+	0	NA	promoter-TSS (NM_197985)	promoter-TSS (NM_197985)	34	NM_197985	68465	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding
354	chr1	155082069	155085861	+	0	NA	promoter-TSS (NR_151545)	promoter-TSS (NR_151545)	-701	NR_151545	671336	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA
587	chr9	44133025	44136635	+	0	NA	promoter-TSS (NR_152189)	promoter-TSS (NR_152189)	172	NM_001359530	84004	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding
566	chr11	79674061	79676363	+	0	NA	promoter-TSS (NR_045898)	promoter-TSS (NR_045898)	-126	NR_045898	72218	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA
809	chr3	108096039	108100608	+	0	NA	exon (NM_008141, exon 7 of 9)	exon (NM_008141, exon 7 of 9)	5257	NM_008141	14686	Mm.439652	NM_008141	ENSMUSG00000009108	Gnat2	AW490837|Gnat-2|Gt-2|Tcalpha	guanine nucleotide binding protein, alpha transducing 2	protein-coding
778	chr3	95158642	95161842	+	0	NA	promoter-TSS (NM_001272024)	promoter-TSS (NM_001272024)	-178	NM_001272024	20360	Mm.23662	NM_011351	ENSMUSG00000038777	Sema6c	Semay|mKIAA1869	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	protein-coding
560	chr11	86543885	86546202	+	0	NA	promoter-TSS (NM_001199047)	promoter-TSS (NM_001199047)	52	NM_019756	56427	Mm.383207	NM_019756	ENSMUSG00000020513	Tubd1	4930550G19Rik|Tubd	tubulin, delta 1	protein-coding
633	chr6	52756462	52758882	+	0	NA	exon (NM_025816, exon 15 of 18)	exon (NM_025816, exon 15 of 18)	43507	NM_001355596	52440	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding
1075	chr1	164144042	164158132	+	0	NA	promoter-TSS (NM_007976)	promoter-TSS (NM_007976)	-748	NM_007976	14067	Mm.12900	NM_007976	ENSMUSG00000026579	F5	AI173222|Cf-5|Cf5	coagulation factor V	protein-coding
93	chr19	54044159	54048319	+	0	NA	exon (NM_007417, exon 1 of 1)	exon (NM_007417, exon 1 of 1)	1057	NM_007417	11551	Mm.235195	NM_007417	ENSMUSG00000033717	Adra2a	AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR	adrenergic receptor, alpha 2a	protein-coding
553	chr11	72398736	72401203	+	0	NA	exon (NM_177776, exon 7 of 8)	exon (NM_177776, exon 7 of 8)	11213	NR_105756	102465172		NR_105756	ENSMUSG00000098658	Mir6338	Gm27678|mmu-mir-6338	microRNA 6338	ncRNA
475	chr6	119416599	119418389	+	0	NA	promoter-TSS (NM_197985)	promoter-TSS (NM_197985)	34	NM_197985	68465	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding
691	chr17	36980317	36982126	+	0	NA	promoter-TSS (NM_029747)	promoter-TSS (NM_029747)	16	NM_029747	76797	Mm.159787	NM_029747	ENSMUSG00000064308	2410137M14Rik	-	RIKEN cDNA 2410137M14 gene	protein-coding
1103	chr1	133244087	133247478	+	0	NA	promoter-TSS (NM_001160268)	promoter-TSS (NM_001160268)	-315	NM_001160268	240753	Mm.253559	NM_182930	ENSMUSG00000041757	Plekha6	9530028L01Rik|AU042621|Pepp3	pleckstrin homology domain containing, family A member 6	protein-coding
997	chr3	108096039	108100608	+	0	NA	exon (NM_008141, exon 7 of 9)	exon (NM_008141, exon 7 of 9)	5257	NM_008141	14686	Mm.439652	NM_008141	ENSMUSG00000009108	Gnat2	AW490837|Gnat-2|Gt-2|Tcalpha	guanine nucleotide binding protein, alpha transducing 2	protein-coding
24	chr3	86785946	86788725	+	0	NA	exon (NM_001195496, exon 17 of 17)	exon (NM_001195496, exon 17 of 17)	133549	NM_001357460	70762	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding
208	chr11	72398736	72401203	+	0	NA	exon (NM_177776, exon 7 of 8)	exon (NM_177776, exon 7 of 8)	11213	NR_105756	102465172		NR_105756	ENSMUSG00000098658	Mir6338	Gm27678|mmu-mir-6338	microRNA 6338	ncRNA
1061	chr8	86555499	86559794	+	0	NA	exon (NM_172912, exon 6 of 29)	exon (NM_172912, exon 6 of 29)	8944	NM_172912	244562	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding
845	chr16	97949022	97951717	+	0	NA	exon (NM_001081684, exon 2 of 2)	exon (NM_001081684, exon 2 of 2)	12253	NM_001320385	114565	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding
97	chr13	54793064	54797084	+	0	NA	exon (NM_028841, exon 5 of 8)	exon (NM_028841, exon 5 of 8)	5669	NM_028841	74257	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding
363	chr2	112130623	112132968	+	0	NA	promoter-TSS (NM_146742)	promoter-TSS (NM_146742)	-980	NM_146742	258737	Mm.377665	NM_146742	ENSMUSG00000109801	Olfr1316	MOR245-1|MOR245-26	olfactory receptor 1316	protein-coding
213	chr11	79674061	79676363	+	0	NA	promoter-TSS (NR_045898)	promoter-TSS (NR_045898)	-126	NR_045898	72218	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA
239	chr15	101051337	101057853	+	0	NA	promoter-TSS (NM_001214911)	promoter-TSS (NM_001214911)	-196	NM_001214911	668225	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding
850	chr8	109774061	109781273	+	0	NA	promoter-TSS (NM_009677)	promoter-TSS (NM_009677)	-916	NM_001301211	11765	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding
711	chr9	89800411	89804190	+	0	NA	promoter-TSS (NR_029570)	promoter-TSS (NR_029570)	28	NR_029570	387179		NR_029570	ENSMUSG00000065596	Mir184	Mirn184|mir-184|mmu-mir-184	microRNA 184	ncRNA
425	chr9	110433801	110438641	+	0	NA	exon (NM_177771, exon 7 of 10)	exon (NM_177771, exon 7 of 10)	16413	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding
847	chr8	124662836	124664772	+	0	NA	promoter-TSS (NM_175149)	promoter-TSS (NM_175149)	-435	NM_175149	69551	Mm.261920	NM_175149	ENSMUSG00000031983	2310022B05Rik	-	RIKEN cDNA 2310022B05 gene	protein-coding
26	chr3	95158642	95161842	+	0	NA	promoter-TSS (NM_001272024)	promoter-TSS (NM_001272024)	-178	NM_001272024	20360	Mm.23662	NM_011351	ENSMUSG00000038777	Sema6c	Semay|mKIAA1869	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	protein-coding
1087	chr3	138123533	138126691	+	0	NA	exon (NM_008642, exon 2 of 18)	exon (NM_008642, exon 2 of 18)	6541	NM_008642	17777	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding
251	chr2	155944494	155947639	+	0	NA	promoter-TSS (NM_008109)	promoter-TSS (NM_008109)	-699	NM_008109	14563	Mm.4744	NM_008109	ENSMUSG00000038259	Gdf5	BMP-14|Cdmp-1|bp|brp	growth differentiation factor 5	protein-coding
839	chr1	174171168	174173975	+	0	NA	promoter-TSS (NM_011465)	promoter-TSS (NM_011465)	-205	NM_011465	20739	Mm.200611	NM_011465	ENSMUSG00000026532	Spta1	AF093576|AI451697|Spna-1|Spna1|ha|ihj|nmf4|sph	spectrin alpha, erythrocytic 1	protein-coding
730	chr8	105303514	105310753	+	0	NA	exon (NM_172760, exon 7 of 20)	exon (NM_172760, exon 7 of 20)	1327	NR_029761	723841		NR_029761	ENSMUSG00000070130	Mir328	Mirn328|miR-328|mmu-mir-328	microRNA 328	ncRNA
157	chr11	102145422	102147853	+	0	NA	exon (NM_145829, exon 2 of 7)	exon (NM_145829, exon 2 of 7)	1124	NM_145829	217214	Mm.31686	NM_145829	ENSMUSG00000048217	Nags	1700120E20Rik|argA	N-acetylglutamate synthase	protein-coding
550	chr2	154379486	154382377	+	0	NA	exon (NM_009228, exon 4 of 8)	exon (NM_009228, exon 4 of 8)	-8212	NM_025876	66971	Mm.289427	NM_025876	ENSMUSG00000027487	Cdk5rap1	2310066P17Rik	CDK5 regulatory subunit associated protein 1	protein-coding
849	chr8	105303514	105310753	+	0	NA	exon (NM_172760, exon 7 of 20)	exon (NM_172760, exon 7 of 20)	1327	NR_029761	723841		NR_029761	ENSMUSG00000070130	Mir328	Mirn328|miR-328|mmu-mir-328	microRNA 328	ncRNA
996	chr3	138413332	138416623	+	0	NA	promoter-TSS (NM_011996)	promoter-TSS (NM_011996)	-520	NM_011996	26876	Mm.158750	NM_011996	ENSMUSG00000037797	Adh4	Adh2	alcohol dehydrogenase 4 (class II), pi polypeptide	protein-coding
343	chr11	54266620	54268981	+	0	NA	promoter-TSS (NM_010556)	promoter-TSS (NM_010556)	-521	NM_010556	16187	Mm.983	NM_010556	ENSMUSG00000018914	Il3	BPA|Csfmu|HCGF|Il-3|MCGF|PSF	interleukin 3	protein-coding
36	chr2	156861444	156863850	+	0	NA	promoter-TSS (NM_026124)	promoter-TSS (NM_026124)	298	NR_015591	74487	Mm.490465	NR_015591	ENSMUSG00000085741	5430405H02Rik	2610307N17Rik	RIKEN cDNA 5430405H02 gene	ncRNA
92	chr15	97843679	97846360	+	0	NA	promoter-TSS (NM_001204279)	promoter-TSS (NM_001204279)	-517	NM_001204279	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding
753	chr19	11817824	11820948	+	0	NA	promoter-TSS (NM_152220)	promoter-TSS (NM_152220)	17	NM_001360386	20908	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding
2	chr4	107245243	107249483	+	0	NA	exon (NM_029985, exon 2 of 8)	exon (NM_029985, exon 2 of 8)	6170	NM_029985	77809	Mm.29681	NM_029985	ENSMUSG00000028617	Lrrc42	A930011F22Rik|AA536996	leucine rich repeat containing 42	protein-coding
65	chr11	102145422	102147853	+	0	NA	exon (NM_145829, exon 2 of 7)	exon (NM_145829, exon 2 of 7)	1124	NM_145829	217214	Mm.31686	NM_145829	ENSMUSG00000048217	Nags	1700120E20Rik|argA	N-acetylglutamate synthase	protein-coding
1003	chr3	87756763	87760181	+	0	NA	5' UTR (NM_001289601, exon 7 of 25)	5' UTR (NM_001289601, exon 7 of 25)	-9849	NM_028971	74485	Mm.474494	NM_028971	ENSMUSG00000023084	Lrrc71	4933430H15Rik	leucine rich repeat containing 71	protein-coding
14	chr3	65185156	65189140	+	0	NA	promoter-TSS (NM_001289450)	promoter-TSS (NM_001289450)	-955	NM_001289450	16497	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding
934	chr8	125896215	125899033	+	0	NA	promoter-TSS (NR_155422)	promoter-TSS (NR_155422)	-290	NR_155422	102632990	Mm.429446	NR_155422		A730098A19Rik	-	RIKEN cDNA A730098A19 gene	ncRNA
630	chr6	90634013	90639991	+	0	NA	intron (NM_001037493, intron 6 of 9)	intron (NM_001037493, intron 6 of 9)	17756	NM_001037493	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding
248	chr8	125896215	125899033	+	0	NA	promoter-TSS (NR_155422)	promoter-TSS (NR_155422)	-290	NR_155422	102632990	Mm.429446	NR_155422		A730098A19Rik	-	RIKEN cDNA A730098A19 gene	ncRNA
13	chr3	108096039	108100608	+	0	NA	exon (NM_008141, exon 7 of 9)	exon (NM_008141, exon 7 of 9)	5257	NM_008141	14686	Mm.439652	NM_008141	ENSMUSG00000009108	Gnat2	AW490837|Gnat-2|Gt-2|Tcalpha	guanine nucleotide binding protein, alpha transducing 2	protein-coding
409	chr8	18695099	18701245	+	0	NA	exon (NM_007426, exon 7 of 9)	exon (NM_007426, exon 7 of 9)	43390	NM_007426	11601	Mm.439874	NM_007426	ENSMUSG00000031465	Angpt2	Agpt2|Ang-2|Ang2	angiopoietin 2	protein-coding
698	chr8	105825913	105828208	+	0	NA	promoter-TSS (NM_024445)	promoter-TSS (NM_024445)	290	NM_145824	74334	Mm.4206	NM_145824	ENSMUSG00000037415	Ranbp10	4432417N03Rik	RAN binding protein 10	protein-coding
745	chr7	126862615	126865802	+	0	NA	exon (NM_172746, exon 4 of 7)	exon (NM_172746, exon 4 of 7)	2236	NM_172746	233876	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding
125	chr7	126862615	126865802	+	0	NA	exon (NM_172746, exon 4 of 7)	exon (NM_172746, exon 4 of 7)	2236	NM_172746	233876	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding
1139	chr14	79513143	79516804	+	0	NA	promoter-TSS (NM_001286412)	promoter-TSS (NM_001286412)	-701	NM_001286412	13709	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding
518	chr11	103826442	103830506	+	0	NA	exon (NM_008740, exon 18 of 21)	exon (NM_008740, exon 18 of 21)	54299	NM_009521	22415	Mm.159091	NM_009521	ENSMUSG00000000125	Wnt3	Int-4|Wnt-3	wingless-type MMTV integration site family, member 3	protein-coding
1021	chr8	85230192	85231933	+	0	NA	exon (NM_146859, exon 1 of 1)	exon (NM_146859, exon 1 of 1)	565	NM_146859	258858	Mm.354727	NM_146859	ENSMUSG00000051952	Olfr371	MOR141-3	olfactory receptor 371	protein-coding
156	chr11	103826442	103830506	+	0	NA	exon (NM_008740, exon 18 of 21)	exon (NM_008740, exon 18 of 21)	54299	NM_009521	22415	Mm.159091	NM_009521	ENSMUSG00000000125	Wnt3	Int-4|Wnt-3	wingless-type MMTV integration site family, member 3	protein-coding
1105	chr1	155082069	155085861	+	0	NA	promoter-TSS (NR_151545)	promoter-TSS (NR_151545)	-701	NR_151545	671336	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA
1029	chr3	129760549	129766071	+	0	NA	non-coding (NR_040589, exon 5 of 5)	non-coding (NR_040589, exon 5 of 5)	-7988	NM_010113	13645	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding
561	chr11	97701859	97703557	+	0	NA	promoter-TSS (NM_011971)	promoter-TSS (NM_011971)	-726	NM_011971	26446	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding
255	chr4	136890497	136896445	+	0	NA	promoter-TSS (NM_007574)	promoter-TSS (NM_007574)	-557	NM_007574	12262	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding
883	chr4	136890497	136896445	+	0	NA	promoter-TSS (NM_007574)	promoter-TSS (NM_007574)	-557	NM_007574	12262	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding
602	chr11	118072277	118074922	+	0	NA	exon (NM_001167746, exon 47 of 81)	exon (NM_001167746, exon 47 of 81)	55620	NM_001167746	69926	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding
339	chr11	86543885	86546202	+	0	NA	promoter-TSS (NM_001199047)	promoter-TSS (NM_001199047)	52	NM_019756	56427	Mm.383207	NM_019756	ENSMUSG00000020513	Tubd1	4930550G19Rik|Tubd	tubulin, delta 1	protein-coding
665	chr6	38875768	38878038	+	0	NA	promoter-TSS (NM_001294144)	promoter-TSS (NM_001294144)	-713	NM_001294143	15258	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding
316	chr17	28574481	28576384	+	0	NA	promoter-TSS (NM_026571)	promoter-TSS (NM_026571)	-287	NM_026571	328789	Mm.284760	NM_026571	ENSMUSG00000062252	Lhfpl5	9330179O15Rik|Tmhs|hscy	lipoma HMGIC fusion partner-like 5	protein-coding
191	chr10	127553882	127556235	+	0	NA	exon (NM_008512, exon 56 of 89)	exon (NM_008512, exon 56 of 89)	-20499	NM_183297	104080	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding
348	chr11	116237871	116239650	+	0	NA	promoter-TSS (NM_025276)	promoter-TSS (NM_025276)	-669	NM_025276	14027	Mm.293683	NM_025276	ENSMUSG00000034282	Evpl	-	envoplakin	protein-coding
909	chr15	101221001	101227541	+	0	NA	promoter-TSS (NM_019518)	promoter-TSS (NM_019518)	64	NM_019518	56149	Mm.276573	NM_019518	ENSMUSG00000000531	Grasp	tamalin	GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein	protein-coding
701	chr8	109774061	109781273	+	0	NA	promoter-TSS (NM_009677)	promoter-TSS (NM_009677)	-916	NM_001301211	11765	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding
342	chr11	79674061	79676363	+	0	NA	promoter-TSS (NR_045898)	promoter-TSS (NR_045898)	-126	NR_045898	72218	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA
685	chr10	127553882	127556235	+	0	NA	exon (NM_008512, exon 56 of 89)	exon (NM_008512, exon 56 of 89)	-20499	NM_183297	104080	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding
315	chr17	63498316	63501177	+	0	NA	exon (NM_015794, exon 1 of 9)	exon (NM_015794, exon 1 of 9)	834	NM_015794	50758	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding
1076	chr1	93822921	93825827	+	0	NA	promoter-TSS (NM_178882)	promoter-TSS (NM_178882)	-866	NM_178882	98314	Mm.383401	NM_178882	ENSMUSG00000073609	D2hgdh	AA408776|AA408778|AI325464	D-2-hydroxyglutarate dehydrogenase	protein-coding
324	chr15	99972974	99974836	+	0	NA	promoter-TSS (NR_028124)	promoter-TSS (NR_028124)	-618	NR_028124	70281	Mm.484037	NR_028124	ENSMUSG00000100084	2310068J16Rik	-	RIKEN cDNA 2310068J16 gene	ncRNA
229	chr15	90566402	90577684	+	0	NA	exon (NM_025815, exon 8 of 20)	exon (NM_025815, exon 8 of 20)	107345	NM_001357979	66871	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding
651	chr19	54044159	54048319	+	0	NA	exon (NM_007417, exon 1 of 1)	exon (NM_007417, exon 1 of 1)	1057	NM_007417	11551	Mm.235195	NM_007417	ENSMUSG00000033717	Adra2a	AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR	adrenergic receptor, alpha 2a	protein-coding
510	chr11	116237871	116239650	+	0	NA	promoter-TSS (NM_025276)	promoter-TSS (NM_025276)	-669	NM_025276	14027	Mm.293683	NM_025276	ENSMUSG00000034282	Evpl	-	envoplakin	protein-coding
992	chr8	124662836	124664772	+	0	NA	promoter-TSS (NM_175149)	promoter-TSS (NM_175149)	-435	NM_175149	69551	Mm.261920	NM_175149	ENSMUSG00000031983	2310022B05Rik	-	RIKEN cDNA 2310022B05 gene	protein-coding
590	chr11	69070545	69074551	+	0	NA	promoter-TSS (NR_028566)	promoter-TSS (NR_028566)	-878	NR_028566	100216530	Mm.453052	NR_028566	ENSMUSG00000064899	Snord118	MBI-34	small nucleolar RNA, C/D box 118	snoRNA
894	chr5	136194430	136205083	+	0	NA	promoter-TSS (NM_025774)	promoter-TSS (NM_025774)	-802	NM_025774	66801	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding
198	chr3	90050686	90053568	+	0	NA	promoter-TSS (NM_027500)	promoter-TSS (NM_027500)	353	NM_001165985	74383	Mm.25610	NM_028475	ENSMUSG00000042520	Ubap2l	3110083O19Rik|4932431F02Rik|A430103N23Rik|C77168|Nice-4|mKIAA0144	ubiquitin-associated protein 2-like	protein-coding
1130	chr7	31074340	31078924	+	0	NA	promoter-TSS (NM_008557)	promoter-TSS (NM_008557)	65	NM_008557	17178	Mm.263847	NM_008557	ENSMUSG00000057092	Fxyd3	Mat8	FXYD domain-containing ion transport regulator 3	protein-coding
858	chr5	136194430	136205083	+	0	NA	promoter-TSS (NM_025774)	promoter-TSS (NM_025774)	-802	NM_025774	66801	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding
10	chr4	86340939	86345226	+	0	NA	exon (NM_029967, exon 18 of 28)	exon (NM_029967, exon 18 of 28)	215221	NM_001081096	75811	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding
55	chr11	79674061	79676363	+	0	NA	promoter-TSS (NR_045898)	promoter-TSS (NR_045898)	-126	NR_045898	72218	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA
445	chr19	42099763	42101817	+	0	NA	exon (NM_145501, exon 2 of 9)	exon (NM_145501, exon 2 of 9)	10355	NM_145501	84095	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding
417	chr8	69815357	69818197	+	0	NA	exon (NM_198101, exon 16 of 21)	exon (NM_198101, exon 16 of 21)	-5788	NM_020028	53978	Mm.23253	NM_020028	ENSMUSG00000031861	Lpar2	Edg4|IPA2|LPA2	lysophosphatidic acid receptor 2	protein-coding
1141	chr9	56239826	56242592	+	0	NA	exon (NM_172924, exon 5 of 7)	exon (NM_172924, exon 5 of 7)	-80139	NM_019793	56434	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding
748	chr19	54044159	54048319	+	0	NA	exon (NM_007417, exon 1 of 1)	exon (NM_007417, exon 1 of 1)	1057	NM_007417	11551	Mm.235195	NM_007417	ENSMUSG00000033717	Adra2a	AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR	adrenergic receptor, alpha 2a	protein-coding
599	chr11	102145422	102147853	+	0	NA	exon (NM_145829, exon 2 of 7)	exon (NM_145829, exon 2 of 7)	1124	NM_145829	217214	Mm.31686	NM_145829	ENSMUSG00000048217	Nags	1700120E20Rik|argA	N-acetylglutamate synthase	protein-coding
1123	chr11	60348101	60358445	+	0	NA	promoter-TSS (NM_029044)	promoter-TSS (NM_029044)	-107	NM_029044	74665	Mm.133570	NM_029044	ENSMUSG00000056598	Drc3	4930449E07Rik|Lrrc48|m6Bei	dynein regulatory complex subunit 3	protein-coding
700	chr8	70896921	70899057	+	0	NA	promoter-TSS (NM_029751)	promoter-TSS (NM_029751)	-546	NM_029751	76808	Mm.379251	NM_029751	ENSMUSG00000045128	Rpl18a	2510019J09Rik	ribosomal protein L18A	protein-coding
154	chr11	97701859	97703557	+	0	NA	promoter-TSS (NM_011971)	promoter-TSS (NM_011971)	-726	NM_011971	26446	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding
318	chr17	29142594	29146388	+	0	NA	exon (NM_001002786, exon 4 of 8)	exon (NM_001002786, exon 4 of 8)	9435	NM_001002786	442827	Mm.440341	NM_001002786	ENSMUSG00000064147	Rab44	9830134C10Rik	RAB44, member RAS oncogene family	protein-coding
690	chr17	32009464	32013015	+	0	NA	exon (NM_028902, exon 5 of 8)	exon (NM_028902, exon 5 of 8)	23269	NM_028902	74377	Mm.75856	NM_028902	ENSMUSG00000002076	Hsf2bp	4932437G14Rik	heat shock transcription factor 2 binding protein	protein-coding
294	chr7	126862615	126865802	+	0	NA	exon (NM_172746, exon 4 of 7)	exon (NM_172746, exon 4 of 7)	2236	NM_172746	233876	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding
875	chr11	103826442	103830506	+	0	NA	exon (NM_008740, exon 18 of 21)	exon (NM_008740, exon 18 of 21)	54299	NM_009521	22415	Mm.159091	NM_009521	ENSMUSG00000000125	Wnt3	Int-4|Wnt-3	wingless-type MMTV integration site family, member 3	protein-coding
837	chr1	162547478	162549847	+	0	NA	promoter-TSS (NM_144877)	promoter-TSS (NM_144877)	-317	NM_144877	71449	Mm.270569	NM_144877	ENSMUSG00000026694	Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding
731	chr8	109774061	109781273	+	0	NA	promoter-TSS (NM_009677)	promoter-TSS (NM_009677)	-916	NM_001301211	11765	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding
12	chr3	80682044	80683563	+	0	NA	non-coding (NR_152148, exon 18 of 18)	non-coding (NR_152148, exon 18 of 18)	120032	NM_013540	14800	Mm.220224	NM_013540	ENSMUSG00000033981	Gria2	GluA2|GluR-B|Glur-2|Glur2|gluR-K2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding
596	chr11	97701859	97703557	+	0	NA	promoter-TSS (NM_011971)	promoter-TSS (NM_011971)	-726	NM_011971	26446	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding
478	chr6	55448891	55454490	+	0	NA	promoter-TSS (NM_007407)	promoter-TSS (NM_007407)	-288	NM_007407	11517	Mm.44245	NM_007407	ENSMUSG00000029778	Adcyap1r1	2900024I10Rik|AI846590|PAC1|PAC1R|PACAP1-R	adenylate cyclase activating polypeptide 1 receptor 1	protein-coding
330	chr11	58141518	58149489	+	0	NA	exon (NM_172558, exon 15 of 28)	exon (NM_172558, exon 15 of 28)	23036	NM_001166671	216766	Mm.275349	NM_172558	ENSMUSG00000037275	Gemin5	AA407055|AA407208|AI451603|BB194447|C330013N08	gem nuclear organelle associated protein 5	protein-coding
275	chr11	77973655	77981464	+	0	NA	exon (NM_001291225, exon 14 of 16)	exon (NM_001291225, exon 14 of 16)	-5257	NM_174852	268448	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding
955	chr15	76366625	76371079	+	0	NA	promoter-TSS (NM_021555)	promoter-TSS (NM_021555)	-46	NM_021555	59053	Mm.133202	NM_021555	ENSMUSG00000022554	Hgh1	Brp16|D15Ertd741e|Fam203a|MNCb-5873	HGH1 homolog	protein-coding
420	chr8	84976607	84979020	+	0	NA	exon (NM_008416, exon 1 of 1)	exon (NM_008416, exon 1 of 1)	935	NM_008416	16477	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding
189	chr10	127119090	127121867	+	0	NA	exon (NM_001171026, exon 2 of 15)	exon (NM_001171026, exon 2 of 15)	682	NM_001171026	216440	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding
660	chr6	90634013	90639991	+	0	NA	intron (NM_001037493, intron 6 of 9)	intron (NM_001037493, intron 6 of 9)	17756	NM_001037493	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding
1093	chr4	136890497	136896445	+	0	NA	promoter-TSS (NM_007574)	promoter-TSS (NM_007574)	-557	NM_007574	12262	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding
775	chr3	129760549	129766071	+	0	NA	non-coding (NR_040589, exon 5 of 5)	non-coding (NR_040589, exon 5 of 5)	-7988	NM_010113	13645	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding
942	chr8	105825913	105828208	+	0	NA	promoter-TSS (NM_024445)	promoter-TSS (NM_024445)	290	NM_145824	74334	Mm.4206	NM_145824	ENSMUSG00000037415	Ranbp10	4432417N03Rik	RAN binding protein 10	protein-coding
431	chr15	76699844	76702870	+	0	NA	promoter-TSS (NM_027122)	promoter-TSS (NM_027122)	-185	NM_027122	69572	Mm.34920	NM_027122	ENSMUSG00000019080	Mfsd3	2310010G13Rik	major facilitator superfamily domain containing 3	protein-coding
306	chr2	154379486	154382377	+	0	NA	exon (NM_009228, exon 4 of 8)	exon (NM_009228, exon 4 of 8)	-8212	NM_025876	66971	Mm.289427	NM_025876	ENSMUSG00000027487	Cdk5rap1	2310066P17Rik	CDK5 regulatory subunit associated protein 1	protein-coding
750	chr19	40723258	40728905	+	0	NA	exon (NM_009848, exon 6 of 10)	exon (NM_009848, exon 6 of 10)	66311	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding
1017	chr8	9974767	9979783	+	0	NA	promoter-TSS (NM_026868)	promoter-TSS (NM_026868)	-442	NM_026868	68904	Mm.142570	NM_026868	ENSMUSG00000040396	Abhd13	1110065L07Rik|AI463703|AI788994	abhydrolase domain containing 13	protein-coding
33	chr15	76699844	76702870	+	0	NA	promoter-TSS (NM_027122)	promoter-TSS (NM_027122)	-185	NM_027122	69572	Mm.34920	NM_027122	ENSMUSG00000019080	Mfsd3	2310010G13Rik	major facilitator superfamily domain containing 3	protein-coding
726	chr16	97949022	97951717	+	0	NA	exon (NM_001081684, exon 2 of 2)	exon (NM_001081684, exon 2 of 2)	12253	NM_001320385	114565	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding
556	chr11	70683559	70693049	+	0	NA	promoter-TSS (NM_178116)	promoter-TSS (NM_178116)	-199	NM_001190376	216874	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding
206	chr11	69070545	69074551	+	0	NA	promoter-TSS (NR_028566)	promoter-TSS (NR_028566)	-878	NR_028566	100216530	Mm.453052	NR_028566	ENSMUSG00000064899	Snord118	MBI-34	small nucleolar RNA, C/D box 118	snoRNA
476	chr6	90634013	90639991	+	0	NA	intron (NM_001037493, intron 6 of 9)	intron (NM_001037493, intron 6 of 9)	17756	NM_001037493	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding
757	chr12	103896263	103901819	+	0	NA	exon (NM_009245, exon 2 of 5)	exon (NM_009245, exon 2 of 5)	5909	NM_009245	20702	Mm.439692	NM_009245	ENSMUSG00000079015	Serpina1c	Pi3|Pi6|Skalp|Spi1-3|Spi1-6|Wap3	serine (or cysteine) peptidase inhibitor, clade A, member 1C	protein-coding
905	chr5	134930717	134933866	+	0	NA	promoter-TSS (NM_024479)	promoter-TSS (NM_024479)	-82	NM_001359538	79565	Mm.34235	NM_024479	ENSMUSG00000040557	Mettl27	AW492986|BC002286|Wbscr27	methyltransferase like 27	protein-coding
579	chr6	90634013	90639991	+	0	NA	intron (NM_001037493, intron 6 of 9)	intron (NM_001037493, intron 6 of 9)	17756	NM_001037493	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding
706	chr8	84976607	84979020	+	0	NA	exon (NM_008416, exon 1 of 1)	exon (NM_008416, exon 1 of 1)	935	NM_008416	16477	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding
823	chr7	126862615	126865802	+	0	NA	exon (NM_172746, exon 4 of 7)	exon (NM_172746, exon 4 of 7)	2236	NM_172746	233876	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding
444	chr19	45000252	45003291	+	0	NA	exon (NM_011976, exon 15 of 15)	exon (NM_011976, exon 15 of 15)	-3892	NM_001348254	226153	Mm.105585	NM_153796	ENSMUSG00000025209	Twnk	D19Ertd626e|PEO|Peo1|Twinl	twinkle mtDNA helicase	protein-coding
901	chr5	30113092	30116262	+	0	NA	exon (NM_001167879, exon 4 of 6)	exon (NM_001167879, exon 4 of 6)	-8591	NM_001256263	433868	Mm.450696	NM_001256263	ENSMUSG00000086815	3110082J24Rik	-	RIKEN cDNA 3110082J24 gene	protein-coding
243	chr15	76699844	76702870	+	0	NA	promoter-TSS (NM_027122)	promoter-TSS (NM_027122)	-185	NM_027122	69572	Mm.34920	NM_027122	ENSMUSG00000019080	Mfsd3	2310010G13Rik	major facilitator superfamily domain containing 3	protein-coding
317	chr17	46247005	46249481	+	0	NA	promoter-TSS (NM_009085)	promoter-TSS (NM_009085)	163	NM_145353	28064	Mm.248769	NM_145353	ENSMUSG00000071074	Yipf3	C6orf109|D17Wsu94e|KLIP1	Yip1 domain family, member 3	protein-coding
482	chr15	101051337	101057853	+	0	NA	promoter-TSS (NM_001214911)	promoter-TSS (NM_001214911)	-196	NM_001214911	668225	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding
604	chr12	103896263	103901819	+	0	NA	exon (NM_009245, exon 2 of 5)	exon (NM_009245, exon 2 of 5)	5909	NM_009245	20702	Mm.439692	NM_009245	ENSMUSG00000079015	Serpina1c	Pi3|Pi6|Skalp|Spi1-3|Spi1-6|Wap3	serine (or cysteine) peptidase inhibitor, clade A, member 1C	protein-coding
145	chr6	38875768	38878038	+	0	NA	promoter-TSS (NM_001294144)	promoter-TSS (NM_001294144)	-713	NM_001294143	15258	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding
70	chr7	73808866	73811257	+	0	NA	non-coding (NR_077222, exon 4 of 4)	non-coding (NR_077222, exon 4 of 4)	6442	NR_077222	100579147	Mm.109205	NR_077222	ENSMUSG00000074067	Gm10619	4932443D20	predicted gene 10619	ncRNA
77	chr7	126862615	126865802	+	0	NA	exon (NM_172746, exon 4 of 7)	exon (NM_172746, exon 4 of 7)	2236	NM_172746	233876	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding
531	chr19	45000252	45003291	+	0	NA	exon (NM_011976, exon 15 of 15)	exon (NM_011976, exon 15 of 15)	-3892	NM_001348254	226153	Mm.105585	NM_153796	ENSMUSG00000025209	Twnk	D19Ertd626e|PEO|Peo1|Twinl	twinkle mtDNA helicase	protein-coding
1129	chr7	16791730	16795853	+	0	NA	exon (NM_009201, exon 6 of 9)	exon (NM_009201, exon 6 of 9)	12445	NM_009201	20514	Mm.1056	NM_009201	ENSMUSG00000001918	Slc1a5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC|Slc1a7	solute carrier family 1 (neutral amino acid transporter), member 5	protein-coding
301	chr11	103826442	103830506	+	0	NA	exon (NM_008740, exon 18 of 21)	exon (NM_008740, exon 18 of 21)	54299	NM_009521	22415	Mm.159091	NM_009521	ENSMUSG00000000125	Wnt3	Int-4|Wnt-3	wingless-type MMTV integration site family, member 3	protein-coding
1004	chr3	95158642	95161842	+	0	NA	promoter-TSS (NM_001272024)	promoter-TSS (NM_001272024)	-178	NM_001272024	20360	Mm.23662	NM_011351	ENSMUSG00000038777	Sema6c	Semay|mKIAA1869	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	protein-coding
965	chr7	140966520	140969415	+	0	NA	promoter-TSS (NM_001112715)	promoter-TSS (NM_001112715)	-61	NM_001360727	68713	Mm.175661	NM_026820	ENSMUSG00000025491	Ifitm1	1110036C17Rik|DSPA2a|Mil-2|Mil2	interferon induced transmembrane protein 1	protein-coding
211	chr11	86543885	86546202	+	0	NA	promoter-TSS (NM_001199047)	promoter-TSS (NM_001199047)	52	NM_019756	56427	Mm.383207	NM_019756	ENSMUSG00000020513	Tubd1	4930550G19Rik|Tubd	tubulin, delta 1	protein-coding
379	chr8	105825913	105828208	+	0	NA	promoter-TSS (NM_024445)	promoter-TSS (NM_024445)	290	NM_145824	74334	Mm.4206	NM_145824	ENSMUSG00000037415	Ranbp10	4432417N03Rik	RAN binding protein 10	protein-coding
1007	chr10	127119090	127121867	+	0	NA	exon (NM_001171026, exon 2 of 15)	exon (NM_001171026, exon 2 of 15)	682	NM_001171026	216440	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding
501	chr11	97796579	97800949	+	0	NA	promoter-TSS (NM_010688)	promoter-TSS (NM_010688)	-801	NM_010688	16796	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding
506	chr11	60348101	60358445	+	0	NA	promoter-TSS (NM_029044)	promoter-TSS (NM_029044)	-107	NM_029044	74665	Mm.133570	NM_029044	ENSMUSG00000056598	Drc3	4930449E07Rik|Lrrc48|m6Bei	dynein regulatory complex subunit 3	protein-coding
542	chr2	134643646	134646288	+	0	NA	promoter-TSS (NM_029148)	promoter-TSS (NM_029148)	-846	NM_029148	52837	Mm.264096	NM_029148	ENSMUSG00000034723	Tmx4	2810417D04Rik|4930500L08Rik|AI843224|AW046784|D2Bwg1356e|Txndc13|mKIAA1162	thioredoxin-related transmembrane protein 4	protein-coding
51	chr11	79674061	79676363	+	0	NA	promoter-TSS (NR_045898)	promoter-TSS (NR_045898)	-126	NR_045898	72218	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA
173	chr8	72432171	72438049	+	0	NA	promoter-TSS (NM_029782)	promoter-TSS (NM_029782)	46	NM_029782	73316	Mm.196315	NM_028500	ENSMUSG00000019732	Calr3	1700031L01Rik|6330586I20Rik|Crt2|cspn	calreticulin 3	protein-coding
680	chr7	126862615	126865802	+	0	NA	exon (NM_172746, exon 4 of 7)	exon (NM_172746, exon 4 of 7)	2236	NM_172746	233876	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding
741	chr16	55933303	55936430	+	0	NA	promoter-TSS (NM_028815)	promoter-TSS (NM_028815)	-18	NM_001159366	74201	Mm.178427	NM_028815	ENSMUSG00000022604	Cep97	2810403B08Rik|4932439K18Rik|AA437768|E130116N02Rik|Lrriq2	centrosomal protein 97	protein-coding
1000	chr3	89181136	89183897	+	0	NA	promoter-TSS (NM_001014995)	promoter-TSS (NM_001014995)	-627	NM_001014995	68521	Mm.274708	NM_001014995	ENSMUSG00000032657	Fam189b	1110013L07Rik	family with sequence similarity 189, member B	protein-coding
457	chr11	103826442	103830506	+	0	NA	exon (NM_008740, exon 18 of 21)	exon (NM_008740, exon 18 of 21)	54299	NM_009521	22415	Mm.159091	NM_009521	ENSMUSG00000000125	Wnt3	Int-4|Wnt-3	wingless-type MMTV integration site family, member 3	protein-coding
491	chr11	116237871	116239650	+	0	NA	promoter-TSS (NM_025276)	promoter-TSS (NM_025276)	-669	NM_025276	14027	Mm.293683	NM_025276	ENSMUSG00000034282	Evpl	-	envoplakin	protein-coding
520	chr11	116237871	116239650	+	0	NA	promoter-TSS (NM_025276)	promoter-TSS (NM_025276)	-669	NM_025276	14027	Mm.293683	NM_025276	ENSMUSG00000034282	Evpl	-	envoplakin	protein-coding
555	chr11	54658661	54663037	+	0	NA	exon (NM_175258, exon 19 of 28)	exon (NM_175258, exon 19 of 28)	64703	NM_001252497	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding
427	chr15	76366625	76371079	+	0	NA	promoter-TSS (NM_021555)	promoter-TSS (NM_021555)	-46	NM_021555	59053	Mm.133202	NM_021555	ENSMUSG00000022554	Hgh1	Brp16|D15Ertd741e|Fam203a|MNCb-5873	HGH1 homolog	protein-coding
279	chr11	97796579	97800949	+	0	NA	promoter-TSS (NM_010688)	promoter-TSS (NM_010688)	-801	NM_010688	16796	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding
421	chr8	84770530	84777859	+	0	NA	5' UTR (NM_001081981, exon 1 of 11)	5' UTR (NM_001081981, exon 1 of 11)	175	NM_001081981	18032	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding
212	chr11	97701859	97703557	+	0	NA	promoter-TSS (NM_011971)	promoter-TSS (NM_011971)	-726	NM_011971	26446	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding
1013	chr8	124662836	124664772	+	0	NA	promoter-TSS (NM_175149)	promoter-TSS (NM_175149)	-435	NM_175149	69551	Mm.261920	NM_175149	ENSMUSG00000031983	2310022B05Rik	-	RIKEN cDNA 2310022B05 gene	protein-coding
332	chr11	72398736	72401203	+	0	NA	exon (NM_177776, exon 7 of 8)	exon (NM_177776, exon 7 of 8)	11213	NR_105756	102465172		NR_105756	ENSMUSG00000098658	Mir6338	Gm27678|mmu-mir-6338	microRNA 6338	ncRNA
959	chr15	99972974	99974836	+	0	NA	promoter-TSS (NR_028124)	promoter-TSS (NR_028124)	-618	NR_028124	70281	Mm.484037	NR_028124	ENSMUSG00000100084	2310068J16Rik	-	RIKEN cDNA 2310068J16 gene	ncRNA
40	chr12	104113173	104119165	+	0	NA	exon (NM_001167705, exon 2 of 5)	exon (NM_001167705, exon 2 of 5)	3445	NM_001167705	74069	Mm.159128	NM_028740	ENSMUSG00000041536	Serpina3a	-	serine (or cysteine) peptidase inhibitor, clade A, member 3A	protein-coding
76	chr7	126862615	126865802	+	0	NA	exon (NM_172746, exon 4 of 7)	exon (NM_172746, exon 4 of 7)	2236	NM_172746	233876	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding
69	chr7	31074340	31078924	+	0	NA	promoter-TSS (NM_008557)	promoter-TSS (NM_008557)	65	NM_008557	17178	Mm.263847	NM_008557	ENSMUSG00000057092	Fxyd3	Mat8	FXYD domain-containing ion transport regulator 3	protein-coding
15	chr3	138123533	138126691	+	0	NA	exon (NM_008642, exon 2 of 18)	exon (NM_008642, exon 2 of 18)	6541	NM_008642	17777	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding
477	chr6	83977943	83980064	+	0	NA	exon (NM_008717, exon 24 of 27)	exon (NM_008717, exon 24 of 27)	-29595	NM_001077694	26903	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding
439	chr17	35704202	35706027	+	0	NA	promoter-TSS (NM_007584)	promoter-TSS (NM_007584)	-515	NM_007584	12305	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding
592	chr11	72398736	72401203	+	0	NA	exon (NM_177776, exon 7 of 8)	exon (NM_177776, exon 7 of 8)	11213	NR_105756	102465172		NR_105756	ENSMUSG00000098658	Mir6338	Gm27678|mmu-mir-6338	microRNA 6338	ncRNA
949	chr8	84976607	84979020	+	0	NA	exon (NM_008416, exon 1 of 1)	exon (NM_008416, exon 1 of 1)	935	NM_008416	16477	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding
971	chr3	65185156	65189140	+	0	NA	promoter-TSS (NM_001289450)	promoter-TSS (NM_001289450)	-955	NM_001289450	16497	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding
987	chr19	42099763	42101817	+	0	NA	exon (NM_145501, exon 2 of 9)	exon (NM_145501, exon 2 of 9)	10355	NM_145501	84095	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding
653	chr19	40723258	40728905	+	0	NA	exon (NM_009848, exon 6 of 10)	exon (NM_009848, exon 6 of 10)	66311	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding
1043	chr1	193104203	193105972	+	0	NA	non-coding (NR_151719, exon 12 of 12)	non-coding (NR_151719, exon 12 of 12)	25164	NM_145415	215193	Mm.173758	NM_145415	ENSMUSG00000016181	Diexf	AA408296|AW045375|Def	digestive organ expansion factor homolog (zebrafish)	protein-coding
993	chr8	105825913	105828208	+	0	NA	promoter-TSS (NM_024445)	promoter-TSS (NM_024445)	290	NM_145824	74334	Mm.4206	NM_145824	ENSMUSG00000037415	Ranbp10	4432417N03Rik	RAN binding protein 10	protein-coding
735	chr8	84976607	84979020	+	0	NA	exon (NM_008416, exon 1 of 1)	exon (NM_008416, exon 1 of 1)	935	NM_008416	16477	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding
1098	chr8	105303514	105310753	+	0	NA	exon (NM_172760, exon 7 of 20)	exon (NM_172760, exon 7 of 20)	1327	NR_029761	723841		NR_029761	ENSMUSG00000070130	Mir328	Mirn328|miR-328|mmu-mir-328	microRNA 328	ncRNA
87	chr15	99972974	99974836	+	0	NA	promoter-TSS (NR_028124)	promoter-TSS (NR_028124)	-618	NR_028124	70281	Mm.484037	NR_028124	ENSMUSG00000100084	2310068J16Rik	-	RIKEN cDNA 2310068J16 gene	ncRNA
336	chr11	72398736	72401203	+	0	NA	exon (NM_177776, exon 7 of 8)	exon (NM_177776, exon 7 of 8)	11213	NR_105756	102465172		NR_105756	ENSMUSG00000098658	Mir6338	Gm27678|mmu-mir-6338	microRNA 6338	ncRNA
259	chr19	42099763	42101817	+	0	NA	exon (NM_145501, exon 2 of 9)	exon (NM_145501, exon 2 of 9)	10355	NM_145501	84095	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding
880	chr1	193104203	193105972	+	0	NA	non-coding (NR_151719, exon 12 of 12)	non-coding (NR_151719, exon 12 of 12)	25164	NM_145415	215193	Mm.173758	NM_145415	ENSMUSG00000016181	Diexf	AA408296|AW045375|Def	digestive organ expansion factor homolog (zebrafish)	protein-coding
719	chr5	103846847	103848600	+	0	NA	exon (NM_001080798, exon 18 of 20)	exon (NM_001080798, exon 18 of 20)	63536	NM_001359987	246293	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding
357	chr1	174171168	174173975	+	0	NA	promoter-TSS (NM_011465)	promoter-TSS (NM_011465)	-205	NM_011465	20739	Mm.200611	NM_011465	ENSMUSG00000026532	Spta1	AF093576|AI451697|Spna-1|Spna1|ha|ihj|nmf4|sph	spectrin alpha, erythrocytic 1	protein-coding
725	chr16	55933303	55936430	+	0	NA	promoter-TSS (NM_028815)	promoter-TSS (NM_028815)	-18	NM_001159366	74201	Mm.178427	NM_028815	ENSMUSG00000022604	Cep97	2810403B08Rik|4932439K18Rik|AA437768|E130116N02Rik|Lrriq2	centrosomal protein 97	protein-coding
1132	chr7	104011850	104015386	+	0	NA	promoter-TSS (NM_147084)	promoter-TSS (NM_147084)	-918	NM_147084	259088	Mm.422750	NM_147084	ENSMUSG00000066263	Olfr639	MOR12-1	olfactory receptor 639	protein-coding
887	chr15	85814962	85818572	+	0	NA	exon (NM_011105, exon 1 of 1)	exon (NM_011105, exon 1 of 1)	4966	NM_011105	18766	Mm.89965	NM_011105	ENSMUSG00000052496	Pkdrej	-	polycystin (PKD) family receptor for egg jelly	protein-coding
291	chr7	119440833	119450163	+	0	NA	exon (NM_025989, exon 10 of 11)	exon (NM_025989, exon 10 of 11)	13774	NM_025989	67133	Mm.46403	NM_025989	ENSMUSG00000030954	Gp2	2310037I18Rik|AV060639	glycoprotein 2 (zymogen granule membrane)	protein-coding
646	chr10	127119090	127121867	+	0	NA	exon (NM_001171026, exon 2 of 15)	exon (NM_001171026, exon 2 of 15)	682	NM_001171026	216440	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding
844	chr16	55933303	55936430	+	0	NA	promoter-TSS (NM_028815)	promoter-TSS (NM_028815)	-18	NM_001159366	74201	Mm.178427	NM_028815	ENSMUSG00000022604	Cep97	2810403B08Rik|4932439K18Rik|AA437768|E130116N02Rik|Lrriq2	centrosomal protein 97	protein-coding
811	chr3	129760549	129766071	+	0	NA	non-coding (NR_040589, exon 5 of 5)	non-coding (NR_040589, exon 5 of 5)	-7988	NM_010113	13645	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding
925	chr9	56239826	56242592	+	0	NA	exon (NM_172924, exon 5 of 7)	exon (NM_172924, exon 5 of 7)	-80139	NM_019793	56434	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding
547	chr2	27021343	27024309	+	0	NA	exon (NM_172659, exon 9 of 10)	exon (NM_172659, exon 9 of 10)	5172	NM_001177627	227659	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding
188	chr6	83977943	83980064	+	0	NA	exon (NM_008717, exon 24 of 27)	exon (NM_008717, exon 24 of 27)	-29595	NM_001077694	26903	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding
469	chr11	97701859	97703557	+	0	NA	promoter-TSS (NM_011971)	promoter-TSS (NM_011971)	-726	NM_011971	26446	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding
1056	chr8	124662836	124664772	+	0	NA	promoter-TSS (NM_175149)	promoter-TSS (NM_175149)	-435	NM_175149	69551	Mm.261920	NM_175149	ENSMUSG00000031983	2310022B05Rik	-	RIKEN cDNA 2310022B05 gene	protein-coding
576	chr4	86340939	86345226	+	0	NA	exon (NM_029967, exon 18 of 28)	exon (NM_029967, exon 18 of 28)	215221	NM_001081096	75811	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding
8	chr4	117914314	117916215	+	0	NA	promoter-TSS (NM_146152)	promoter-TSS (NM_146152)	-265	NM_146152	230673	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding
908	chr15	99972974	99974836	+	0	NA	promoter-TSS (NR_028124)	promoter-TSS (NR_028124)	-618	NR_028124	70281	Mm.484037	NR_028124	ENSMUSG00000100084	2310068J16Rik	-	RIKEN cDNA 2310068J16 gene	ncRNA
1028	chr3	138123533	138126691	+	0	NA	exon (NM_008642, exon 2 of 18)	exon (NM_008642, exon 2 of 18)	6541	NM_008642	17777	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding
831	chr7	126862615	126865802	+	0	NA	exon (NM_172746, exon 4 of 7)	exon (NM_172746, exon 4 of 7)	2236	NM_172746	233876	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding
801	chr3	86785946	86788725	+	0	NA	exon (NM_001195496, exon 17 of 17)	exon (NM_001195496, exon 17 of 17)	133549	NM_001357460	70762	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding
898	chr5	122706371	122708458	+	0	NA	promoter-TSS (NM_011026)	promoter-TSS (NM_011026)	-130	NM_011026	18438	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding
666	chr6	52756462	52758882	+	0	NA	exon (NM_025816, exon 15 of 18)	exon (NM_025816, exon 15 of 18)	43507	NM_001355596	52440	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding
497	chr11	54658661	54663037	+	0	NA	exon (NM_175258, exon 19 of 28)	exon (NM_175258, exon 19 of 28)	64703	NM_001252497	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding
292	chr7	140966520	140969415	+	0	NA	promoter-TSS (NM_001112715)	promoter-TSS (NM_001112715)	-61	NM_001360727	68713	Mm.175661	NM_026820	ENSMUSG00000025491	Ifitm1	1110036C17Rik|DSPA2a|Mil-2|Mil2	interferon induced transmembrane protein 1	protein-coding
1071	chr1	155082069	155085861	+	0	NA	promoter-TSS (NR_151545)	promoter-TSS (NR_151545)	-701	NR_151545	671336	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA
816	chr2	155944494	155947639	+	0	NA	promoter-TSS (NM_008109)	promoter-TSS (NM_008109)	-699	NM_008109	14563	Mm.4744	NM_008109	ENSMUSG00000038259	Gdf5	BMP-14|Cdmp-1|bp|brp	growth differentiation factor 5	protein-coding
233	chr15	76699844	76702870	+	0	NA	promoter-TSS (NM_027122)	promoter-TSS (NM_027122)	-185	NM_027122	69572	Mm.34920	NM_027122	ENSMUSG00000019080	Mfsd3	2310010G13Rik	major facilitator superfamily domain containing 3	protein-coding
406	chr8	125896215	125899033	+	0	NA	promoter-TSS (NR_155422)	promoter-TSS (NR_155422)	-290	NR_155422	102632990	Mm.429446	NR_155422		A730098A19Rik	-	RIKEN cDNA A730098A19 gene	ncRNA
597	chr11	79674061	79676363	+	0	NA	promoter-TSS (NR_045898)	promoter-TSS (NR_045898)	-126	NR_045898	72218	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA
808	chr3	138413332	138416623	+	0	NA	promoter-TSS (NM_011996)	promoter-TSS (NM_011996)	-520	NM_011996	26876	Mm.158750	NM_011996	ENSMUSG00000037797	Adh4	Adh2	alcohol dehydrogenase 4 (class II), pi polypeptide	protein-coding
565	chr11	102145422	102147853	+	0	NA	exon (NM_145829, exon 2 of 7)	exon (NM_145829, exon 2 of 7)	1124	NM_145829	217214	Mm.31686	NM_145829	ENSMUSG00000048217	Nags	1700120E20Rik|argA	N-acetylglutamate synthase	protein-coding
112	chr15	97843679	97846360	+	0	NA	promoter-TSS (NM_001204279)	promoter-TSS (NM_001204279)	-517	NM_001204279	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding
346	chr11	102145422	102147853	+	0	NA	exon (NM_145829, exon 2 of 7)	exon (NM_145829, exon 2 of 7)	1124	NM_145829	217214	Mm.31686	NM_145829	ENSMUSG00000048217	Nags	1700120E20Rik|argA	N-acetylglutamate synthase	protein-coding
541	chr2	28914721	28918309	+	0	NA	promoter-TSS (NM_001164186)	promoter-TSS (NM_001164186)	-75	NM_001164186	54422	Mm.21390	NM_019446	ENSMUSG00000026805	Barhl1	Dres115|MBH2	BarH like homeobox 1	protein-coding
1016	chr8	105303514	105310753	+	0	NA	exon (NM_172760, exon 7 of 20)	exon (NM_172760, exon 7 of 20)	1327	NR_029761	723841		NR_029761	ENSMUSG00000070130	Mir328	Mirn328|miR-328|mmu-mir-328	microRNA 328	ncRNA
1122	chr11	54266620	54268981	+	0	NA	promoter-TSS (NM_010556)	promoter-TSS (NM_010556)	-521	NM_010556	16187	Mm.983	NM_010556	ENSMUSG00000018914	Il3	BPA|Csfmu|HCGF|Il-3|MCGF|PSF	interleukin 3	protein-coding
392	chr2	134643646	134646288	+	0	NA	promoter-TSS (NM_029148)	promoter-TSS (NM_029148)	-846	NM_029148	52837	Mm.264096	NM_029148	ENSMUSG00000034723	Tmx4	2810417D04Rik|4930500L08Rik|AI843224|AW046784|D2Bwg1356e|Txndc13|mKIAA1162	thioredoxin-related transmembrane protein 4	protein-coding
640	chr3	80686809	80689869	+	0	NA	non-coding (NR_152148, exon 18 of 18)	non-coding (NR_152148, exon 18 of 18)	114496	NM_013540	14800	Mm.220224	NM_013540	ENSMUSG00000033981	Gria2	GluA2|GluR-B|Glur-2|Glur2|gluR-K2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding
557	chr11	72398736	72401203	+	0	NA	exon (NM_177776, exon 7 of 8)	exon (NM_177776, exon 7 of 8)	11213	NR_105756	102465172		NR_105756	ENSMUSG00000098658	Mir6338	Gm27678|mmu-mir-6338	microRNA 6338	ncRNA
139	chr6	90634013	90639991	+	0	NA	intron (NM_001037493, intron 6 of 9)	intron (NM_001037493, intron 6 of 9)	17756	NM_001037493	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding
415	chr8	72432171	72438049	+	0	NA	promoter-TSS (NM_029782)	promoter-TSS (NM_029782)	46	NM_029782	73316	Mm.196315	NM_028500	ENSMUSG00000019732	Calr3	1700031L01Rik|6330586I20Rik|Crt2|cspn	calreticulin 3	protein-coding
645	chr3	95158642	95161842	+	0	NA	promoter-TSS (NM_001272024)	promoter-TSS (NM_001272024)	-178	NM_001272024	20360	Mm.23662	NM_011351	ENSMUSG00000038777	Sema6c	Semay|mKIAA1869	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	protein-coding
270	chr16	10540210	10547389	+	0	NA	promoter-TSS (NM_021428)	promoter-TSS (NM_021428)	-745	NM_021428	58239	Mm.353006	NM_021428	ENSMUSG00000038055	Dexi	1810029J14Rik|AI836170|AW413143|D16Bwg0586e|Myle	dexamethasone-induced transcript	protein-coding
603	chr12	86191792	86197838	+	0	NA	non-coding (NR_046081, exon 5 of 5)	non-coding (NR_046081, exon 5 of 5)	25474	NR_046081	328136	Mm.312050	NR_046081	ENSMUSG00000097543	Gm805	-	predicted gene 805	ncRNA
907	chr15	101051337	101057853	+	0	NA	promoter-TSS (NM_001214911)	promoter-TSS (NM_001214911)	-196	NM_001214911	668225	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding
953	chr15	33687468	33689986	+	0	NA	promoter-TSS (NM_001085421)	promoter-TSS (NM_001085421)	-844	NM_001085421	239364	Mm.60794	NM_001085421	ENSMUSG00000038984	Tspyl5	6330530B20|E130308C19Rik	testis-specific protein, Y-encoded-like 5	protein-coding
224	chr2	93848895	93852828	+	0	NA	promoter-TSS (NM_001290782)	promoter-TSS (NM_001290782)	-918	NM_001290782	329470	Mm.486910	NM_183220	ENSMUSG00000040272	Accs	2610203E10Rik|Phacs	1-aminocyclopropane-1-carboxylate synthase (non-functional)	protein-coding
1055	chr8	125896215	125899033	+	0	NA	promoter-TSS (NR_155422)	promoter-TSS (NR_155422)	-290	NR_155422	102632990	Mm.429446	NR_155422		A730098A19Rik	-	RIKEN cDNA A730098A19 gene	ncRNA
799	chr3	37419015	37421147	+	0	NA	promoter-TSS (NM_001291044)	promoter-TSS (NM_001291044)	131	NM_001163511	57815	Mm.172679	NM_021343	ENSMUSG00000027722	Spata5	2510048F20Rik|C78064|Spaf	spermatogenesis associated 5	protein-coding
577	chr4	86340939	86345226	+	0	NA	exon (NM_029967, exon 18 of 28)	exon (NM_029967, exon 18 of 28)	215221	NM_001081096	75811	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding
784	chr3	90050686	90053568	+	0	NA	promoter-TSS (NM_027500)	promoter-TSS (NM_027500)	353	NM_001165985	74383	Mm.25610	NM_028475	ENSMUSG00000042520	Ubap2l	3110083O19Rik|4932431F02Rik|A430103N23Rik|C77168|Nice-4|mKIAA0144	ubiquitin-associated protein 2-like	protein-coding
707	chr8	84770530	84777859	+	0	NA	5' UTR (NM_001081981, exon 1 of 11)	5' UTR (NM_001081981, exon 1 of 11)	175	NM_001081981	18032	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding
752	chr19	45000252	45003291	+	0	NA	exon (NM_011976, exon 15 of 15)	exon (NM_011976, exon 15 of 15)	-3892	NM_001348254	226153	Mm.105585	NM_153796	ENSMUSG00000025209	Twnk	D19Ertd626e|PEO|Peo1|Twinl	twinkle mtDNA helicase	protein-coding
580	chr14	79513143	79516804	+	0	NA	promoter-TSS (NM_001286412)	promoter-TSS (NM_001286412)	-701	NM_001286412	13709	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding
277	chr11	72398736	72401203	+	0	NA	exon (NM_177776, exon 7 of 8)	exon (NM_177776, exon 7 of 8)	11213	NR_105756	102465172		NR_105756	ENSMUSG00000098658	Mir6338	Gm27678|mmu-mir-6338	microRNA 6338	ncRNA
573	chr4	115495412	115498050	+	0	NA	promoter-TSS (NM_007822)	promoter-TSS (NM_007822)	-590	NM_007822	13119	Mm.250901	NM_007822	ENSMUSG00000028715	Cyp4a14	AI314743	cytochrome P450, family 4, subfamily a, polypeptide 14	protein-coding
150	chr11	72398736	72401203	+	0	NA	exon (NM_177776, exon 7 of 8)	exon (NM_177776, exon 7 of 8)	11213	NR_105756	102465172		NR_105756	ENSMUSG00000098658	Mir6338	Gm27678|mmu-mir-6338	microRNA 6338	ncRNA
223	chr2	156861444	156863850	+	0	NA	promoter-TSS (NM_026124)	promoter-TSS (NM_026124)	298	NR_015591	74487	Mm.490465	NR_015591	ENSMUSG00000085741	5430405H02Rik	2610307N17Rik	RIKEN cDNA 5430405H02 gene	ncRNA
564	chr11	103826442	103830506	+	0	NA	exon (NM_008740, exon 18 of 21)	exon (NM_008740, exon 18 of 21)	54299	NM_009521	22415	Mm.159091	NM_009521	ENSMUSG00000000125	Wnt3	Int-4|Wnt-3	wingless-type MMTV integration site family, member 3	protein-coding
152	chr11	97796579	97800949	+	0	NA	promoter-TSS (NM_010688)	promoter-TSS (NM_010688)	-801	NM_010688	16796	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding
616	chr11	116237871	116239650	+	0	NA	promoter-TSS (NM_025276)	promoter-TSS (NM_025276)	-669	NM_025276	14027	Mm.293683	NM_025276	ENSMUSG00000034282	Evpl	-	envoplakin	protein-coding
355	chr1	162547478	162549847	+	0	NA	promoter-TSS (NM_144877)	promoter-TSS (NM_144877)	-317	NM_144877	71449	Mm.270569	NM_144877	ENSMUSG00000026694	Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding
586	chr9	78366931	78370523	+	0	NA	promoter-TSS (NM_025274)	promoter-TSS (NM_025274)	-528	NM_025274	434423	Mm.139314	NM_025274	ENSMUSG00000060461	Dppa5a	AA536857|Dppa5|Esg1|ecat2	developmental pluripotency associated 5A	protein-coding
483	chr15	85814962	85818572	+	0	NA	exon (NM_011105, exon 1 of 1)	exon (NM_011105, exon 1 of 1)	4966	NM_011105	18766	Mm.89965	NM_011105	ENSMUSG00000052496	Pkdrej	-	polycystin (PKD) family receptor for egg jelly	protein-coding
760	chr8	124662836	124664772	+	0	NA	promoter-TSS (NM_175149)	promoter-TSS (NM_175149)	-435	NM_175149	69551	Mm.261920	NM_175149	ENSMUSG00000031983	2310022B05Rik	-	RIKEN cDNA 2310022B05 gene	protein-coding
219	chr11	118072277	118074922	+	0	NA	exon (NM_001167746, exon 47 of 81)	exon (NM_001167746, exon 47 of 81)	55620	NM_001167746	69926	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding
178	chr8	84770530	84777859	+	0	NA	5' UTR (NM_001081981, exon 1 of 11)	5' UTR (NM_001081981, exon 1 of 11)	175	NM_001081981	18032	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding
910	chr3	138413332	138416623	+	0	NA	promoter-TSS (NM_011996)	promoter-TSS (NM_011996)	-520	NM_011996	26876	Mm.158750	NM_011996	ENSMUSG00000037797	Adh4	Adh2	alcohol dehydrogenase 4 (class II), pi polypeptide	protein-coding
594	chr11	97796579	97800949	+	0	NA	promoter-TSS (NM_010688)	promoter-TSS (NM_010688)	-801	NM_010688	16796	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding
454	chr4	86340939	86345226	+	0	NA	exon (NM_029967, exon 18 of 28)	exon (NM_029967, exon 18 of 28)	215221	NM_001081096	75811	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding
373	chr2	167529849	167544829	+	0	NA	promoter-TSS (NM_011427)	promoter-TSS (NM_011427)	-856	NM_011427	20613	Mm.2093	NM_011427	ENSMUSG00000042821	Snai1	Sna|Sna1|Snail|Snail1	snail family zinc finger 1	protein-coding
712	chr9	110433801	110438641	+	0	NA	exon (NM_177771, exon 7 of 10)	exon (NM_177771, exon 7 of 10)	16413	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding
59	chr11	106821998	106824126	+	0	NA	exon (NM_025481, exon 18 of 19)	exon (NM_025481, exon 18 of 19)	33810	NM_001166685	320162	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding
739	chr16	10540210	10547389	+	0	NA	promoter-TSS (NM_021428)	promoter-TSS (NM_021428)	-745	NM_021428	58239	Mm.353006	NM_021428	ENSMUSG00000038055	Dexi	1810029J14Rik|AI836170|AW413143|D16Bwg0586e|Myle	dexamethasone-induced transcript	protein-coding
584	chr9	89800411	89804190	+	0	NA	promoter-TSS (NR_029570)	promoter-TSS (NR_029570)	28	NR_029570	387179		NR_029570	ENSMUSG00000065596	Mir184	Mirn184|mir-184|mmu-mir-184	microRNA 184	ncRNA
161	chr1	175891099	175892979	+	0	NA	exon (NM_012012, exon 7 of 15)	exon (NM_012012, exon 7 of 15)	11261	NM_012012	26909	Mm.283046	NM_012012	ENSMUSG00000039748	Exo1	5730442G03Rik|Msa	exonuclease 1	protein-coding
800	chr3	55170557	55173390	+	0	NA	non-coding (NR_110776, exon 9 of 9)	non-coding (NR_110776, exon 9 of 9)	-10071	NM_028937	74434	Mm.25514	NM_028937	ENSMUSG00000027794	Sohlh2	4933406N12Rik|AI413378|Sosf2	spermatogenesis and oogenesis specific basic helix-loop-helix 2	protein-coding
353	chr1	92586524	92588289	+	0	NA	promoter-TSS (NM_146277)	promoter-TSS (NM_146277)	-926	NM_146277	258274	Mm.222974	NM_146277	ENSMUSG00000046300	Olfr1412	MOR208-4	olfactory receptor 1412	protein-coding
18	chr3	80686809	80689869	+	0	NA	non-coding (NR_152148, exon 18 of 18)	non-coding (NR_152148, exon 18 of 18)	114496	NM_013540	14800	Mm.220224	NM_013540	ENSMUSG00000033981	Gria2	GluA2|GluR-B|Glur-2|Glur2|gluR-K2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding
264	chr4	136890497	136896445	+	0	NA	promoter-TSS (NM_007574)	promoter-TSS (NM_007574)	-557	NM_007574	12262	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding
705	chr8	86555499	86559794	+	0	NA	exon (NM_172912, exon 6 of 29)	exon (NM_172912, exon 6 of 29)	8944	NM_172912	244562	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding
470	chr11	103826442	103830506	+	0	NA	exon (NM_008740, exon 18 of 21)	exon (NM_008740, exon 18 of 21)	54299	NM_009521	22415	Mm.159091	NM_009521	ENSMUSG00000000125	Wnt3	Int-4|Wnt-3	wingless-type MMTV integration site family, member 3	protein-coding
202	chr3	95158642	95161842	+	0	NA	promoter-TSS (NM_001272024)	promoter-TSS (NM_001272024)	-178	NM_001272024	20360	Mm.23662	NM_011351	ENSMUSG00000038777	Sema6c	Semay|mKIAA1869	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	protein-coding
404	chr11	116237871	116239650	+	0	NA	promoter-TSS (NM_025276)	promoter-TSS (NM_025276)	-669	NM_025276	14027	Mm.293683	NM_025276	ENSMUSG00000034282	Evpl	-	envoplakin	protein-coding
975	chr3	80686809	80689869	+	0	NA	non-coding (NR_152148, exon 18 of 18)	non-coding (NR_152148, exon 18 of 18)	114496	NM_013540	14800	Mm.220224	NM_013540	ENSMUSG00000033981	Gria2	GluA2|GluR-B|Glur-2|Glur2|gluR-K2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding
892	chr15	97843679	97846360	+	0	NA	promoter-TSS (NM_001204279)	promoter-TSS (NM_001204279)	-517	NM_001204279	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding
9	chr4	86340939	86345226	+	0	NA	exon (NM_029967, exon 18 of 28)	exon (NM_029967, exon 18 of 28)	215221	NM_001081096	75811	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding
271	chr16	5144668	5148152	+	0	NA	promoter-TSS (NM_001127725)	promoter-TSS (NM_001127725)	-699	NM_001127725	665119	Mm.102072	NM_001127725	ENSMUSG00000091712	Sec14l5	-	SEC14-like lipid binding 5	protein-coding
933	chr17	35704202	35706027	+	0	NA	promoter-TSS (NM_007584)	promoter-TSS (NM_007584)	-515	NM_007584	12305	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding
1124	chr11	103826442	103830506	+	0	NA	exon (NM_008740, exon 18 of 21)	exon (NM_008740, exon 18 of 21)	54299	NM_009521	22415	Mm.159091	NM_009521	ENSMUSG00000000125	Wnt3	Int-4|Wnt-3	wingless-type MMTV integration site family, member 3	protein-coding
935	chr8	124662836	124664772	+	0	NA	promoter-TSS (NM_175149)	promoter-TSS (NM_175149)	-435	NM_175149	69551	Mm.261920	NM_175149	ENSMUSG00000031983	2310022B05Rik	-	RIKEN cDNA 2310022B05 gene	protein-coding
494	chr11	77973655	77981464	+	0	NA	exon (NM_001291225, exon 14 of 16)	exon (NM_001291225, exon 14 of 16)	-5257	NM_174852	268448	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding
978	chr3	86785946	86788725	+	0	NA	exon (NM_001195496, exon 17 of 17)	exon (NM_001195496, exon 17 of 17)	133549	NM_001357460	70762	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding
328	chr17	46247005	46249481	+	0	NA	promoter-TSS (NM_009085)	promoter-TSS (NM_009085)	163	NM_145353	28064	Mm.248769	NM_145353	ENSMUSG00000071074	Yipf3	C6orf109|D17Wsu94e|KLIP1	Yip1 domain family, member 3	protein-coding
648	chr17	63498316	63501177	+	0	NA	exon (NM_015794, exon 1 of 9)	exon (NM_015794, exon 1 of 9)	834	NM_015794	50758	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding
527	chr19	41585920	41591070	+	0	NA	promoter-TSS (NR_106166)	promoter-TSS (NR_106166)	-156	NR_106166	102465884		NR_106166	ENSMUSG00000098286	Mir8091	Gm27575|mmu-mir-8091	microRNA 8091	ncRNA
1125	chr11	102145422	102147853	+	0	NA	exon (NM_145829, exon 2 of 7)	exon (NM_145829, exon 2 of 7)	1124	NM_145829	217214	Mm.31686	NM_145829	ENSMUSG00000048217	Nags	1700120E20Rik|argA	N-acetylglutamate synthase	protein-coding
381	chr8	70896921	70899057	+	0	NA	promoter-TSS (NM_029751)	promoter-TSS (NM_029751)	-546	NM_029751	76808	Mm.379251	NM_029751	ENSMUSG00000045128	Rpl18a	2510019J09Rik	ribosomal protein L18A	protein-coding
972	chr3	138123533	138126691	+	0	NA	exon (NM_008642, exon 2 of 18)	exon (NM_008642, exon 2 of 18)	6541	NM_008642	17777	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding
116	chr15	101221001	101227541	+	0	NA	promoter-TSS (NM_019518)	promoter-TSS (NM_019518)	64	NM_019518	56149	Mm.276573	NM_019518	ENSMUSG00000000531	Grasp	tamalin	GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein	protein-coding
334	chr11	54658661	54663037	+	0	NA	exon (NM_175258, exon 19 of 28)	exon (NM_175258, exon 19 of 28)	64703	NM_001252497	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding
91	chr15	51991023	51994234	+	0	NA	promoter-TSS (NM_009009)	promoter-TSS (NM_009009)	-868	NM_009009	19357	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding
441	chr19	41585920	41591070	+	0	NA	promoter-TSS (NR_106166)	promoter-TSS (NR_106166)	-156	NR_106166	102465884		NR_106166	ENSMUSG00000098286	Mir8091	Gm27575|mmu-mir-8091	microRNA 8091	ncRNA
374	chr19	54044159	54048319	+	0	NA	exon (NM_007417, exon 1 of 1)	exon (NM_007417, exon 1 of 1)	1057	NM_007417	11551	Mm.235195	NM_007417	ENSMUSG00000033717	Adra2a	AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR	adrenergic receptor, alpha 2a	protein-coding
544	chr2	156861444	156863850	+	0	NA	promoter-TSS (NM_026124)	promoter-TSS (NM_026124)	298	NR_015591	74487	Mm.490465	NR_015591	ENSMUSG00000085741	5430405H02Rik	2610307N17Rik	RIKEN cDNA 5430405H02 gene	ncRNA
728	chr8	124662836	124664772	+	0	NA	promoter-TSS (NM_175149)	promoter-TSS (NM_175149)	-435	NM_175149	69551	Mm.261920	NM_175149	ENSMUSG00000031983	2310022B05Rik	-	RIKEN cDNA 2310022B05 gene	protein-coding
73	chr7	108159608	108161313	+	0	NA	promoter-TSS (NM_001011810)	promoter-TSS (NM_001011810)	-589	NM_001011810	258041	Mm.377336	NM_001011810	ENSMUSG00000108995	Olfr485	MOR204-30P	olfactory receptor 485	protein-coding
1090	chr4	107245243	107249483	+	0	NA	exon (NM_029985, exon 2 of 8)	exon (NM_029985, exon 2 of 8)	6170	NM_029985	77809	Mm.29681	NM_029985	ENSMUSG00000028617	Lrrc42	A930011F22Rik|AA536996	leucine rich repeat containing 42	protein-coding
1070	chr1	92586524	92588289	+	0	NA	promoter-TSS (NM_146277)	promoter-TSS (NM_146277)	-926	NM_146277	258274	Mm.222974	NM_146277	ENSMUSG00000046300	Olfr1412	MOR208-4	olfactory receptor 1412	protein-coding
314	chr17	30203896	30214645	+	0	NA	non-coding (NR_151442, exon 4 of 4)	non-coding (NR_151442, exon 4 of 4)	186910	NR_030688	623169	Mm.440508	NR_030688		Gm6402	EG623169	ribosomal protein S17 pseudogene	pseudo
288	chr7	104011850	104015386	+	0	NA	promoter-TSS (NM_147084)	promoter-TSS (NM_147084)	-918	NM_147084	259088	Mm.422750	NM_147084	ENSMUSG00000066263	Olfr639	MOR12-1	olfactory receptor 639	protein-coding
829	chr12	103690891	103692991	+	0	NA	exon (NM_026687, exon 4 of 6)	exon (NM_026687, exon 4 of 6)	2748	NM_001164742	68348	Mm.20149	NM_026687	ENSMUSG00000021081	Serpina1f	0610012A11Rik|AI327419|Serpina2|epserin	serine (or cysteine) peptidase inhibitor, clade A, member 1F	protein-coding
99	chr13	17991752	17994857	+	0	NA	promoter-TSS (NM_025904)	promoter-TSS (NM_025904)	47	NM_025904	67008	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding
268	chr16	32734880	32737573	+	0	NA	5' UTR (NM_080457, exon 1 of 27)	5' UTR (NM_080457, exon 1 of 27)	340	NM_080457	140474	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding
11	chr3	138413332	138416623	+	0	NA	promoter-TSS (NM_011996)	promoter-TSS (NM_011996)	-520	NM_011996	26876	Mm.158750	NM_011996	ENSMUSG00000037797	Adh4	Adh2	alcohol dehydrogenase 4 (class II), pi polypeptide	protein-coding
80	chr16	97949022	97951717	+	0	NA	exon (NM_001081684, exon 2 of 2)	exon (NM_001081684, exon 2 of 2)	12253	NM_001320385	114565	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding
964	chr15	97843679	97846360	+	0	NA	promoter-TSS (NM_001204279)	promoter-TSS (NM_001204279)	-517	NM_001204279	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding
659	chr6	119416599	119418389	+	0	NA	promoter-TSS (NM_197985)	promoter-TSS (NM_197985)	34	NM_197985	68465	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding
559	chr11	97796579	97800949	+	0	NA	promoter-TSS (NM_010688)	promoter-TSS (NM_010688)	-801	NM_010688	16796	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding
1140	chr9	121764987	121768002	+	0	NA	exon (NM_001166644, exon 4 of 6)	exon (NM_001166644, exon 4 of 6)	6461	NM_001166644	270210	Mm.473702	NM_001166644	ENSMUSG00000013419	Zfp651	4732420M22Rik|BC030045|R74626	zinc finger protein 651	protein-coding
21	chr3	144951684	144954046	+	0	NA	exon (NM_207208, exon 14 of 14)	exon (NM_207208, exon 14 of 14)	-20336	NM_001033199	99709	Mm.440040	NM_001033199	ENSMUSG00000074195	Clca4b	AI747448|Clca7	chloride channel accessory 4B	protein-coding
309	chr2	155944494	155947639	+	0	NA	promoter-TSS (NM_008109)	promoter-TSS (NM_008109)	-699	NM_008109	14563	Mm.4744	NM_008109	ENSMUSG00000038259	Gdf5	BMP-14|Cdmp-1|bp|brp	growth differentiation factor 5	protein-coding
1064	chr17	63498316	63501177	+	0	NA	exon (NM_015794, exon 1 of 9)	exon (NM_015794, exon 1 of 9)	834	NM_015794	50758	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding
49	chr11	86543885	86546202	+	0	NA	promoter-TSS (NM_001199047)	promoter-TSS (NM_001199047)	52	NM_019756	56427	Mm.383207	NM_019756	ENSMUSG00000020513	Tubd1	4930550G19Rik|Tubd	tubulin, delta 1	protein-coding
791	chr3	108096039	108100608	+	0	NA	exon (NM_008141, exon 7 of 9)	exon (NM_008141, exon 7 of 9)	5257	NM_008141	14686	Mm.439652	NM_008141	ENSMUSG00000009108	Gnat2	AW490837|Gnat-2|Gt-2|Tcalpha	guanine nucleotide binding protein, alpha transducing 2	protein-coding
1121	chr11	79674061	79676363	+	0	NA	promoter-TSS (NR_045898)	promoter-TSS (NR_045898)	-126	NR_045898	72218	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA
1035	chr16	4717188	4720833	+	0	NA	5' UTR (NM_001290761, exon 1 of 5)	5' UTR (NM_001290761, exon 1 of 5)	346	NM_026393	67824	Mm.28451	NM_026393	ENSMUSG00000063445	Nmral1	1110025F24Rik|AI256624	NmrA-like family domain containing 1	protein-coding
615	chr11	106821998	106824126	+	0	NA	exon (NM_025481, exon 18 of 19)	exon (NM_025481, exon 18 of 19)	33810	NM_001166685	320162	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding
245	chr15	51991023	51994234	+	0	NA	promoter-TSS (NM_009009)	promoter-TSS (NM_009009)	-868	NM_009009	19357	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding
943	chr8	105303514	105310753	+	0	NA	exon (NM_172760, exon 7 of 20)	exon (NM_172760, exon 7 of 20)	1327	NR_029761	723841		NR_029761	ENSMUSG00000070130	Mir328	Mirn328|miR-328|mmu-mir-328	microRNA 328	ncRNA
539	chr12	103690891	103692991	+	0	NA	exon (NM_026687, exon 4 of 6)	exon (NM_026687, exon 4 of 6)	2748	NM_001164742	68348	Mm.20149	NM_026687	ENSMUSG00000021081	Serpina1f	0610012A11Rik|AI327419|Serpina2|epserin	serine (or cysteine) peptidase inhibitor, clade A, member 1F	protein-coding
991	chr8	125896215	125899033	+	0	NA	promoter-TSS (NR_155422)	promoter-TSS (NR_155422)	-290	NR_155422	102632990	Mm.429446	NR_155422		A730098A19Rik	-	RIKEN cDNA A730098A19 gene	ncRNA
370	chr15	101221001	101227541	+	0	NA	promoter-TSS (NM_019518)	promoter-TSS (NM_019518)	64	NM_019518	56149	Mm.276573	NM_019518	ENSMUSG00000000531	Grasp	tamalin	GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein	protein-coding
27	chr15	90566402	90577684	+	0	NA	exon (NM_025815, exon 8 of 20)	exon (NM_025815, exon 8 of 20)	107345	NM_001357979	66871	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding
563	chr11	60348101	60358445	+	0	NA	promoter-TSS (NM_029044)	promoter-TSS (NM_029044)	-107	NM_029044	74665	Mm.133570	NM_029044	ENSMUSG00000056598	Drc3	4930449E07Rik|Lrrc48|m6Bei	dynein regulatory complex subunit 3	protein-coding
932	chr17	36980317	36982126	+	0	NA	promoter-TSS (NM_029747)	promoter-TSS (NM_029747)	16	NM_029747	76797	Mm.159787	NM_029747	ENSMUSG00000064308	2410137M14Rik	-	RIKEN cDNA 2410137M14 gene	protein-coding
773	chr3	108096039	108100608	+	0	NA	exon (NM_008141, exon 7 of 9)	exon (NM_008141, exon 7 of 9)	5257	NM_008141	14686	Mm.439652	NM_008141	ENSMUSG00000009108	Gnat2	AW490837|Gnat-2|Gt-2|Tcalpha	guanine nucleotide binding protein, alpha transducing 2	protein-coding
426	chr15	90566402	90577684	+	0	NA	exon (NM_025815, exon 8 of 20)	exon (NM_025815, exon 8 of 20)	107345	NM_001357979	66871	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding
418	chr8	86555499	86559794	+	0	NA	exon (NM_172912, exon 6 of 29)	exon (NM_172912, exon 6 of 29)	8944	NM_172912	244562	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding
403	chr9	78366931	78370523	+	0	NA	promoter-TSS (NM_025274)	promoter-TSS (NM_025274)	-528	NM_025274	434423	Mm.139314	NM_025274	ENSMUSG00000060461	Dppa5a	AA536857|Dppa5|Esg1|ecat2	developmental pluripotency associated 5A	protein-coding
1099	chr8	109774061	109781273	+	0	NA	promoter-TSS (NM_009677)	promoter-TSS (NM_009677)	-916	NM_001301211	11765	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding
1006	chr1	193104203	193105972	+	0	NA	non-coding (NR_151719, exon 12 of 12)	non-coding (NR_151719, exon 12 of 12)	25164	NM_145415	215193	Mm.173758	NM_145415	ENSMUSG00000016181	Diexf	AA408296|AW045375|Def	digestive organ expansion factor homolog (zebrafish)	protein-coding
832	chr7	126862615	126865802	+	0	NA	exon (NM_172746, exon 4 of 7)	exon (NM_172746, exon 4 of 7)	2236	NM_172746	233876	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding
683	chr10	87964007	87968357	+	0	NA	promoter-TSS (NR_000040)	promoter-TSS (NR_000040)	-489	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo
401	chr9	89800411	89804190	+	0	NA	promoter-TSS (NR_029570)	promoter-TSS (NR_029570)	28	NR_029570	387179		NR_029570	ENSMUSG00000065596	Mir184	Mirn184|mir-184|mmu-mir-184	microRNA 184	ncRNA
608	chr17	30203896	30214645	+	0	NA	non-coding (NR_151442, exon 4 of 4)	non-coding (NR_151442, exon 4 of 4)	186910	NR_030688	623169	Mm.440508	NR_030688		Gm6402	EG623169	ribosomal protein S17 pseudogene	pseudo
644	chr3	87756763	87760181	+	0	NA	5' UTR (NM_001289601, exon 7 of 25)	5' UTR (NM_001289601, exon 7 of 25)	-9849	NM_028971	74485	Mm.474494	NM_028971	ENSMUSG00000023084	Lrrc71	4933430H15Rik	leucine rich repeat containing 71	protein-coding
35	chr15	97843679	97846360	+	0	NA	promoter-TSS (NM_001204279)	promoter-TSS (NM_001204279)	-517	NM_001204279	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding
196	chr3	89181136	89183897	+	0	NA	promoter-TSS (NM_001014995)	promoter-TSS (NM_001014995)	-627	NM_001014995	68521	Mm.274708	NM_001014995	ENSMUSG00000032657	Fam189b	1110013L07Rik	family with sequence similarity 189, member B	protein-coding
838	chr1	193104203	193105972	+	0	NA	non-coding (NR_151719, exon 12 of 12)	non-coding (NR_151719, exon 12 of 12)	25164	NM_145415	215193	Mm.173758	NM_145415	ENSMUSG00000016181	Diexf	AA408296|AW045375|Def	digestive organ expansion factor homolog (zebrafish)	protein-coding
819	chr7	119440833	119450163	+	0	NA	exon (NM_025989, exon 10 of 11)	exon (NM_025989, exon 10 of 11)	13774	NM_025989	67133	Mm.46403	NM_025989	ENSMUSG00000030954	Gp2	2310037I18Rik|AV060639	glycoprotein 2 (zymogen granule membrane)	protein-coding
613	chr17	36980317	36982126	+	0	NA	promoter-TSS (NM_029747)	promoter-TSS (NM_029747)	16	NM_029747	76797	Mm.159787	NM_029747	ENSMUSG00000064308	2410137M14Rik	-	RIKEN cDNA 2410137M14 gene	protein-coding
107	chr15	99972974	99974836	+	0	NA	promoter-TSS (NR_028124)	promoter-TSS (NR_028124)	-618	NR_028124	70281	Mm.484037	NR_028124	ENSMUSG00000100084	2310068J16Rik	-	RIKEN cDNA 2310068J16 gene	ncRNA
422	chr16	55933303	55936430	+	0	NA	promoter-TSS (NM_028815)	promoter-TSS (NM_028815)	-18	NM_001159366	74201	Mm.178427	NM_028815	ENSMUSG00000022604	Cep97	2810403B08Rik|4932439K18Rik|AA437768|E130116N02Rik|Lrriq2	centrosomal protein 97	protein-coding
1073	chr1	193104203	193105972	+	0	NA	non-coding (NR_151719, exon 12 of 12)	non-coding (NR_151719, exon 12 of 12)	25164	NM_145415	215193	Mm.173758	NM_145415	ENSMUSG00000016181	Diexf	AA408296|AW045375|Def	digestive organ expansion factor homolog (zebrafish)	protein-coding
74	chr7	119440833	119450163	+	0	NA	exon (NM_025989, exon 10 of 11)	exon (NM_025989, exon 10 of 11)	13774	NM_025989	67133	Mm.46403	NM_025989	ENSMUSG00000030954	Gp2	2310037I18Rik|AV060639	glycoprotein 2 (zymogen granule membrane)	protein-coding
567	chr11	116237871	116239650	+	0	NA	promoter-TSS (NM_025276)	promoter-TSS (NM_025276)	-669	NM_025276	14027	Mm.293683	NM_025276	ENSMUSG00000034282	Evpl	-	envoplakin	protein-coding
141	chr6	83977943	83980064	+	0	NA	exon (NM_008717, exon 24 of 27)	exon (NM_008717, exon 24 of 27)	-29595	NM_001077694	26903	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding
274	chr16	97949022	97951717	+	0	NA	exon (NM_001081684, exon 2 of 2)	exon (NM_001081684, exon 2 of 2)	12253	NM_001320385	114565	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding
372	chr2	156861444	156863850	+	0	NA	promoter-TSS (NM_026124)	promoter-TSS (NM_026124)	298	NR_015591	74487	Mm.490465	NR_015591	ENSMUSG00000085741	5430405H02Rik	2610307N17Rik	RIKEN cDNA 5430405H02 gene	ncRNA
414	chr8	109774061	109781273	+	0	NA	promoter-TSS (NM_009677)	promoter-TSS (NM_009677)	-916	NM_001301211	11765	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding
170	chr8	105303514	105310753	+	0	NA	exon (NM_172760, exon 7 of 20)	exon (NM_172760, exon 7 of 20)	1327	NR_029761	723841		NR_029761	ENSMUSG00000070130	Mir328	Mirn328|miR-328|mmu-mir-328	microRNA 328	ncRNA
376	chr8	125896215	125899033	+	0	NA	promoter-TSS (NR_155422)	promoter-TSS (NR_155422)	-290	NR_155422	102632990	Mm.429446	NR_155422		A730098A19Rik	-	RIKEN cDNA A730098A19 gene	ncRNA
913	chr3	65185156	65189140	+	0	NA	promoter-TSS (NM_001289450)	promoter-TSS (NM_001289450)	-955	NM_001289450	16497	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding
387	chr8	84976607	84979020	+	0	NA	exon (NM_008416, exon 1 of 1)	exon (NM_008416, exon 1 of 1)	935	NM_008416	16477	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding
552	chr11	77973655	77981464	+	0	NA	exon (NM_001291225, exon 14 of 16)	exon (NM_001291225, exon 14 of 16)	-5257	NM_174852	268448	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding
284	chr11	102145422	102147853	+	0	NA	exon (NM_145829, exon 2 of 7)	exon (NM_145829, exon 2 of 7)	1124	NM_145829	217214	Mm.31686	NM_145829	ENSMUSG00000048217	Nags	1700120E20Rik|argA	N-acetylglutamate synthase	protein-coding
451	chr4	115495412	115498050	+	0	NA	promoter-TSS (NM_007822)	promoter-TSS (NM_007822)	-590	NM_007822	13119	Mm.250901	NM_007822	ENSMUSG00000028715	Cyp4a14	AI314743	cytochrome P450, family 4, subfamily a, polypeptide 14	protein-coding
543	chr2	112130623	112132968	+	0	NA	promoter-TSS (NM_146742)	promoter-TSS (NM_146742)	-980	NM_146742	258737	Mm.377665	NM_146742	ENSMUSG00000109801	Olfr1316	MOR245-1|MOR245-26	olfactory receptor 1316	protein-coding
1048	chr4	136890497	136896445	+	0	NA	promoter-TSS (NM_007574)	promoter-TSS (NM_007574)	-557	NM_007574	12262	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding
595	chr11	86543885	86546202	+	0	NA	promoter-TSS (NM_001199047)	promoter-TSS (NM_001199047)	52	NM_019756	56427	Mm.383207	NM_019756	ENSMUSG00000020513	Tubd1	4930550G19Rik|Tubd	tubulin, delta 1	protein-coding
169	chr8	105825913	105828208	+	0	NA	promoter-TSS (NM_024445)	promoter-TSS (NM_024445)	290	NM_145824	74334	Mm.4206	NM_145824	ENSMUSG00000037415	Ranbp10	4432417N03Rik	RAN binding protein 10	protein-coding
312	chr2	154379486	154382377	+	0	NA	exon (NM_009228, exon 4 of 8)	exon (NM_009228, exon 4 of 8)	-8212	NM_025876	66971	Mm.289427	NM_025876	ENSMUSG00000027487	Cdk5rap1	2310066P17Rik	CDK5 regulatory subunit associated protein 1	protein-coding
703	chr8	85230192	85231933	+	0	NA	exon (NM_146859, exon 1 of 1)	exon (NM_146859, exon 1 of 1)	565	NM_146859	258858	Mm.354727	NM_146859	ENSMUSG00000051952	Olfr371	MOR141-3	olfactory receptor 371	protein-coding
637	chr3	138123533	138126691	+	0	NA	exon (NM_008642, exon 2 of 18)	exon (NM_008642, exon 2 of 18)	6541	NM_008642	17777	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding
1051	chr6	119416599	119418389	+	0	NA	promoter-TSS (NM_197985)	promoter-TSS (NM_197985)	34	NM_197985	68465	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding
1041	chr16	97949022	97951717	+	0	NA	exon (NM_001081684, exon 2 of 2)	exon (NM_001081684, exon 2 of 2)	12253	NM_001320385	114565	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding
868	chr6	55448891	55454490	+	0	NA	promoter-TSS (NM_007407)	promoter-TSS (NM_007407)	-288	NM_007407	11517	Mm.44245	NM_007407	ENSMUSG00000029778	Adcyap1r1	2900024I10Rik|AI846590|PAC1|PAC1R|PACAP1-R	adenylate cyclase activating polypeptide 1 receptor 1	protein-coding
436	chr17	46247005	46249481	+	0	NA	promoter-TSS (NM_009085)	promoter-TSS (NM_009085)	163	NM_145353	28064	Mm.248769	NM_145353	ENSMUSG00000071074	Yipf3	C6orf109|D17Wsu94e|KLIP1	Yip1 domain family, member 3	protein-coding
290	chr7	108159608	108161313	+	0	NA	promoter-TSS (NM_001011810)	promoter-TSS (NM_001011810)	-589	NM_001011810	258041	Mm.377336	NM_001011810	ENSMUSG00000108995	Olfr485	MOR204-30P	olfactory receptor 485	protein-coding
303	chr11	79674061	79676363	+	0	NA	promoter-TSS (NR_045898)	promoter-TSS (NR_045898)	-126	NR_045898	72218	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA
1104	chr1	175891099	175892979	+	0	NA	exon (NM_012012, exon 7 of 15)	exon (NM_012012, exon 7 of 15)	11261	NM_012012	26909	Mm.283046	NM_012012	ENSMUSG00000039748	Exo1	5730442G03Rik|Msa	exonuclease 1	protein-coding
45	chr11	70683559	70693049	+	0	NA	promoter-TSS (NM_178116)	promoter-TSS (NM_178116)	-199	NM_001190376	216874	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding
976	chr3	90050686	90053568	+	0	NA	promoter-TSS (NM_027500)	promoter-TSS (NM_027500)	353	NM_001165985	74383	Mm.25610	NM_028475	ENSMUSG00000042520	Ubap2l	3110083O19Rik|4932431F02Rik|A430103N23Rik|C77168|Nice-4|mKIAA0144	ubiquitin-associated protein 2-like	protein-coding
57	chr11	118072277	118074922	+	0	NA	exon (NM_001167746, exon 47 of 81)	exon (NM_001167746, exon 47 of 81)	55620	NM_001167746	69926	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding
951	chr15	51991023	51994234	+	0	NA	promoter-TSS (NM_009009)	promoter-TSS (NM_009009)	-868	NM_009009	19357	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding
794	chr3	129760549	129766071	+	0	NA	non-coding (NR_040589, exon 5 of 5)	non-coding (NR_040589, exon 5 of 5)	-7988	NM_010113	13645	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding
948	chr8	86555499	86559794	+	0	NA	exon (NM_172912, exon 6 of 29)	exon (NM_172912, exon 6 of 29)	8944	NM_172912	244562	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding
684	chr10	76236544	76239504	+	0	NA	promoter-TSS (NR_126571)	promoter-TSS (NR_126571)	-159	NM_001077638	15468	Mm.32020	NM_133182	ENSMUSG00000020230	Prmt2	AI504737|Hrmt1l1	protein arginine N-methyltransferase 2	protein-coding
789	chr3	138413332	138416623	+	0	NA	promoter-TSS (NM_011996)	promoter-TSS (NM_011996)	-520	NM_011996	26876	Mm.158750	NM_011996	ENSMUSG00000037797	Adh4	Adh2	alcohol dehydrogenase 4 (class II), pi polypeptide	protein-coding
793	chr3	138123533	138126691	+	0	NA	exon (NM_008642, exon 2 of 18)	exon (NM_008642, exon 2 of 18)	6541	NM_008642	17777	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding
408	chr8	124662836	124664772	+	0	NA	promoter-TSS (NM_175149)	promoter-TSS (NM_175149)	-435	NM_175149	69551	Mm.261920	NM_175149	ENSMUSG00000031983	2310022B05Rik	-	RIKEN cDNA 2310022B05 gene	protein-coding
115	chr15	99972974	99974836	+	0	NA	promoter-TSS (NR_028124)	promoter-TSS (NR_028124)	-618	NR_028124	70281	Mm.484037	NR_028124	ENSMUSG00000100084	2310068J16Rik	-	RIKEN cDNA 2310068J16 gene	ncRNA
966	chr19	54044159	54048319	+	0	NA	exon (NM_007417, exon 1 of 1)	exon (NM_007417, exon 1 of 1)	1057	NM_007417	11551	Mm.235195	NM_007417	ENSMUSG00000033717	Adra2a	AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR	adrenergic receptor, alpha 2a	protein-coding
655	chr19	42099763	42101817	+	0	NA	exon (NM_145501, exon 2 of 9)	exon (NM_145501, exon 2 of 9)	10355	NM_145501	84095	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding
168	chr8	124662836	124664772	+	0	NA	promoter-TSS (NM_175149)	promoter-TSS (NM_175149)	-435	NM_175149	69551	Mm.261920	NM_175149	ENSMUSG00000031983	2310022B05Rik	-	RIKEN cDNA 2310022B05 gene	protein-coding
708	chr4	136890497	136896445	+	0	NA	promoter-TSS (NM_007574)	promoter-TSS (NM_007574)	-557	NM_007574	12262	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding
606	chr12	103690891	103692991	+	0	NA	exon (NM_026687, exon 4 of 6)	exon (NM_026687, exon 4 of 6)	2748	NM_001164742	68348	Mm.20149	NM_026687	ENSMUSG00000021081	Serpina1f	0610012A11Rik|AI327419|Serpina2|epserin	serine (or cysteine) peptidase inhibitor, clade A, member 1F	protein-coding
488	chr11	97796579	97800949	+	0	NA	promoter-TSS (NM_010688)	promoter-TSS (NM_010688)	-801	NM_010688	16796	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding
383	chr8	72432171	72438049	+	0	NA	promoter-TSS (NM_029782)	promoter-TSS (NM_029782)	46	NM_029782	73316	Mm.196315	NM_028500	ENSMUSG00000019732	Calr3	1700031L01Rik|6330586I20Rik|Crt2|cspn	calreticulin 3	protein-coding
652	chr19	42099763	42101817	+	0	NA	exon (NM_145501, exon 2 of 9)	exon (NM_145501, exon 2 of 9)	10355	NM_145501	84095	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding
647	chr10	127553882	127556235	+	0	NA	exon (NM_008512, exon 56 of 89)	exon (NM_008512, exon 56 of 89)	-20499	NM_183297	104080	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding
575	chr4	117914314	117916215	+	0	NA	promoter-TSS (NM_146152)	promoter-TSS (NM_146152)	-265	NM_146152	230673	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding
507	chr11	103826442	103830506	+	0	NA	exon (NM_008740, exon 18 of 21)	exon (NM_008740, exon 18 of 21)	54299	NM_009521	22415	Mm.159091	NM_009521	ENSMUSG00000000125	Wnt3	Int-4|Wnt-3	wingless-type MMTV integration site family, member 3	protein-coding
989	chr19	45000252	45003291	+	0	NA	exon (NM_011976, exon 15 of 15)	exon (NM_011976, exon 15 of 15)	-3892	NM_001348254	226153	Mm.105585	NM_153796	ENSMUSG00000025209	Twnk	D19Ertd626e|PEO|Peo1|Twinl	twinkle mtDNA helicase	protein-coding
419	chr8	4608938	4616092	+	0	NA	promoter-TSS (NM_145591)	promoter-TSS (NM_145591)	-655	NM_145591	233987	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding
453	chr4	117914314	117916215	+	0	NA	promoter-TSS (NM_146152)	promoter-TSS (NM_146152)	-265	NM_146152	230673	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding
954	chr15	90566402	90577684	+	0	NA	exon (NM_025815, exon 8 of 20)	exon (NM_025815, exon 8 of 20)	107345	NM_001357979	66871	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding
523	chr3	138123533	138126691	+	0	NA	exon (NM_008642, exon 2 of 18)	exon (NM_008642, exon 2 of 18)	6541	NM_008642	17777	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding
714	chr5	30113092	30116262	+	0	NA	exon (NM_001167879, exon 4 of 6)	exon (NM_001167879, exon 4 of 6)	-8591	NM_001256263	433868	Mm.450696	NM_001256263	ENSMUSG00000086815	3110082J24Rik	-	RIKEN cDNA 3110082J24 gene	protein-coding
626	chr6	90634013	90639991	+	0	NA	intron (NM_001037493, intron 6 of 9)	intron (NM_001037493, intron 6 of 9)	17756	NM_001037493	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding
884	chr15	90566402	90577684	+	0	NA	exon (NM_025815, exon 8 of 20)	exon (NM_025815, exon 8 of 20)	107345	NM_001357979	66871	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding
203	chr11	58141518	58149489	+	0	NA	exon (NM_172558, exon 15 of 28)	exon (NM_172558, exon 15 of 28)	23036	NM_001166671	216766	Mm.275349	NM_172558	ENSMUSG00000037275	Gemin5	AA407055|AA407208|AI451603|BB194447|C330013N08	gem nuclear organelle associated protein 5	protein-coding
329	chr2	167529849	167544829	+	0	NA	promoter-TSS (NM_011427)	promoter-TSS (NM_011427)	-856	NM_011427	20613	Mm.2093	NM_011427	ENSMUSG00000042821	Snai1	Sna|Sna1|Snail|Snail1	snail family zinc finger 1	protein-coding
440	chr19	42044084	42046618	+	0	NA	promoter-TSS (NM_026152)	promoter-TSS (NM_026152)	-500	NM_026152	67432	Mm.24196	NM_026152	ENSMUSG00000025176	Hoga1	0610010D20Rik|Dhdpsl|Npl2	4-hydroxy-2-oxoglutarate aldolase 1	protein-coding
1066	chr17	36980317	36982126	+	0	NA	promoter-TSS (NM_029747)	promoter-TSS (NM_029747)	16	NM_029747	76797	Mm.159787	NM_029747	ENSMUSG00000064308	2410137M14Rik	-	RIKEN cDNA 2410137M14 gene	protein-coding
822	chr7	126862615	126865802	+	0	NA	exon (NM_172746, exon 4 of 7)	exon (NM_172746, exon 4 of 7)	2236	NM_172746	233876	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding
486	chr15	97843679	97846360	+	0	NA	promoter-TSS (NM_001204279)	promoter-TSS (NM_001204279)	-517	NM_001204279	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding
484	chr15	99972974	99974836	+	0	NA	promoter-TSS (NR_028124)	promoter-TSS (NR_028124)	-618	NR_028124	70281	Mm.484037	NR_028124	ENSMUSG00000100084	2310068J16Rik	-	RIKEN cDNA 2310068J16 gene	ncRNA
331	chr11	77973655	77981464	+	0	NA	exon (NM_001291225, exon 14 of 16)	exon (NM_001291225, exon 14 of 16)	-5257	NM_174852	268448	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding
1034	chr16	32734880	32737573	+	0	NA	5' UTR (NM_080457, exon 1 of 27)	5' UTR (NM_080457, exon 1 of 27)	340	NM_080457	140474	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding
410	chr8	105825913	105828208	+	0	NA	promoter-TSS (NM_024445)	promoter-TSS (NM_024445)	290	NM_145824	74334	Mm.4206	NM_145824	ENSMUSG00000037415	Ranbp10	4432417N03Rik	RAN binding protein 10	protein-coding
228	chr2	154379486	154382377	+	0	NA	exon (NM_009228, exon 4 of 8)	exon (NM_009228, exon 4 of 8)	-8212	NM_025876	66971	Mm.289427	NM_025876	ENSMUSG00000027487	Cdk5rap1	2310066P17Rik	CDK5 regulatory subunit associated protein 1	protein-coding
886	chr15	101051337	101057853	+	0	NA	promoter-TSS (NM_001214911)	promoter-TSS (NM_001214911)	-196	NM_001214911	668225	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding
98	chr13	62783703	62787820	+	0	NA	promoter-TSS (NM_001256065)	promoter-TSS (NM_001256065)	47	NM_001256065	380850	Mm.439823	NM_001256065	ENSMUSG00000091183	Gm5141	-	predicted gene 5141	protein-coding
155	chr11	79674061	79676363	+	0	NA	promoter-TSS (NR_045898)	promoter-TSS (NR_045898)	-126	NR_045898	72218	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA
756	chr19	23242697	23245111	+	0	NA	exon (NM_001252685, exon 9 of 24)	exon (NM_001252685, exon 9 of 24)	28695	NM_001252685	226026	Mm.23267	NM_153808	ENSMUSG00000024943	Smc5	MLZ-453|SMC-5|Smc5l1|mKIAA0594|mSMC5	structural maintenance of chromosomes 5	protein-coding
467	chr11	106821998	106824126	+	0	NA	exon (NM_025481, exon 18 of 19)	exon (NM_025481, exon 18 of 19)	33810	NM_001166685	320162	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding
688	chr17	63498316	63501177	+	0	NA	exon (NM_015794, exon 1 of 9)	exon (NM_015794, exon 1 of 9)	834	NM_015794	50758	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding
941	chr8	124662836	124664772	+	0	NA	promoter-TSS (NM_175149)	promoter-TSS (NM_175149)	-435	NM_175149	69551	Mm.261920	NM_175149	ENSMUSG00000031983	2310022B05Rik	-	RIKEN cDNA 2310022B05 gene	protein-coding
1085	chr3	138413332	138416623	+	0	NA	promoter-TSS (NM_011996)	promoter-TSS (NM_011996)	-520	NM_011996	26876	Mm.158750	NM_011996	ENSMUSG00000037797	Adh4	Adh2	alcohol dehydrogenase 4 (class II), pi polypeptide	protein-coding
929	chr17	37224529	37227100	+	0	NA	exon (NM_146514, exon 1 of 1)	exon (NM_146514, exon 1 of 1)	687	NM_146514	258507	Mm.377543	NM_146514	ENSMUSG00000064121	Olfr96	MOR121-1	olfactory receptor 96	protein-coding
280	chr11	86543885	86546202	+	0	NA	promoter-TSS (NM_001199047)	promoter-TSS (NM_001199047)	52	NM_019756	56427	Mm.383207	NM_019756	ENSMUSG00000020513	Tubd1	4930550G19Rik|Tubd	tubulin, delta 1	protein-coding
737	chr16	32734880	32737573	+	0	NA	5' UTR (NM_080457, exon 1 of 27)	5' UTR (NM_080457, exon 1 of 27)	340	NM_080457	140474	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding
225	chr2	155944494	155947639	+	0	NA	promoter-TSS (NM_008109)	promoter-TSS (NM_008109)	-699	NM_008109	14563	Mm.4744	NM_008109	ENSMUSG00000038259	Gdf5	BMP-14|Cdmp-1|bp|brp	growth differentiation factor 5	protein-coding
899	chr5	134930717	134933866	+	0	NA	promoter-TSS (NM_024479)	promoter-TSS (NM_024479)	-82	NM_001359538	79565	Mm.34235	NM_024479	ENSMUSG00000040557	Mettl27	AW492986|BC002286|Wbscr27	methyltransferase like 27	protein-coding
614	chr17	35704202	35706027	+	0	NA	promoter-TSS (NM_007584)	promoter-TSS (NM_007584)	-515	NM_007584	12305	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding
713	chr5	136566925	136568564	+	0	NA	promoter-TSS (NM_009986)	promoter-TSS (NM_009986)	-254	NM_001291234	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding
407	chr8	35821991	35829287	+	0	NA	exon (NM_027998, exon 1 of 1)	exon (NM_027998, exon 1 of 1)	920	NM_027998	71908	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding
1143	chr9	4374684	4378400	+	0	NA	promoter-TSS (NM_145609)	promoter-TSS (NM_145609)	-10	NM_145609	78100	Mm.206549	NM_145609	ENSMUSG00000041124	Msantd4	8430410K20Rik|Mysantd4	Myb/SANT-like DNA-binding domain containing 4 with coiled-coils	protein-coding
1120	chr11	97701859	97703557	+	0	NA	promoter-TSS (NM_011971)	promoter-TSS (NM_011971)	-726	NM_011971	26446	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding
780	chr3	108096039	108100608	+	0	NA	exon (NM_008141, exon 7 of 9)	exon (NM_008141, exon 7 of 9)	5257	NM_008141	14686	Mm.439652	NM_008141	ENSMUSG00000009108	Gnat2	AW490837|Gnat-2|Gt-2|Tcalpha	guanine nucleotide binding protein, alpha transducing 2	protein-coding
890	chr15	76699844	76702870	+	0	NA	promoter-TSS (NM_027122)	promoter-TSS (NM_027122)	-185	NM_027122	69572	Mm.34920	NM_027122	ENSMUSG00000019080	Mfsd3	2310010G13Rik	major facilitator superfamily domain containing 3	protein-coding
1107	chr1	193104203	193105972	+	0	NA	non-coding (NR_151719, exon 12 of 12)	non-coding (NR_151719, exon 12 of 12)	25164	NM_145415	215193	Mm.173758	NM_145415	ENSMUSG00000016181	Diexf	AA408296|AW045375|Def	digestive organ expansion factor homolog (zebrafish)	protein-coding
1062	chr11	118072277	118074922	+	0	NA	exon (NM_001167746, exon 47 of 81)	exon (NM_001167746, exon 47 of 81)	55620	NM_001167746	69926	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding
96	chr19	42099763	42101817	+	0	NA	exon (NM_145501, exon 2 of 9)	exon (NM_145501, exon 2 of 9)	10355	NM_145501	84095	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding
826	chr12	82396376	82398596	+	0	NA	exon (NM_172579, exon 9 of 21)	exon (NM_172579, exon 9 of 21)	86137	NM_172579	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding
551	chr11	58141518	58149489	+	0	NA	exon (NM_172558, exon 15 of 28)	exon (NM_172558, exon 15 of 28)	23036	NM_001166671	216766	Mm.275349	NM_172558	ENSMUSG00000037275	Gemin5	AA407055|AA407208|AI451603|BB194447|C330013N08	gem nuclear organelle associated protein 5	protein-coding
873	chr11	86543885	86546202	+	0	NA	promoter-TSS (NM_001199047)	promoter-TSS (NM_001199047)	52	NM_019756	56427	Mm.383207	NM_019756	ENSMUSG00000020513	Tubd1	4930550G19Rik|Tubd	tubulin, delta 1	protein-coding
435	chr17	63498316	63501177	+	0	NA	exon (NM_015794, exon 1 of 9)	exon (NM_015794, exon 1 of 9)	834	NM_015794	50758	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding
358	chr1	164144042	164158132	+	0	NA	promoter-TSS (NM_007976)	promoter-TSS (NM_007976)	-748	NM_007976	14067	Mm.12900	NM_007976	ENSMUSG00000026579	F5	AI173222|Cf-5|Cf5	coagulation factor V	protein-coding
889	chr15	75920691	75922996	+	0	NA	promoter-TSS (NM_025412)	promoter-TSS (NM_025412)	-283	NM_025412	66194	Mm.250599	NM_025412	ENSMUSG00000022571	Pycrl	1110058B13Rik|2700073G24Rik|Pycr3	pyrroline-5-carboxylate reductase-like	protein-coding
82	chr15	90566402	90577684	+	0	NA	exon (NM_025815, exon 8 of 20)	exon (NM_025815, exon 8 of 20)	107345	NM_001357979	66871	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding
344	chr11	60348101	60358445	+	0	NA	promoter-TSS (NM_029044)	promoter-TSS (NM_029044)	-107	NM_029044	74665	Mm.133570	NM_029044	ENSMUSG00000056598	Drc3	4930449E07Rik|Lrrc48|m6Bei	dynein regulatory complex subunit 3	protein-coding
632	chr6	55448891	55454490	+	0	NA	promoter-TSS (NM_007407)	promoter-TSS (NM_007407)	-288	NM_007407	11517	Mm.44245	NM_007407	ENSMUSG00000029778	Adcyap1r1	2900024I10Rik|AI846590|PAC1|PAC1R|PACAP1-R	adenylate cyclase activating polypeptide 1 receptor 1	protein-coding
58	chr10	127553882	127556235	+	0	NA	exon (NM_008512, exon 56 of 89)	exon (NM_008512, exon 56 of 89)	-20499	NM_183297	104080	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding
124	chr7	126862615	126865802	+	0	NA	exon (NM_172746, exon 4 of 7)	exon (NM_172746, exon 4 of 7)	2236	NM_172746	233876	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding
247	chr15	101221001	101227541	+	0	NA	promoter-TSS (NM_019518)	promoter-TSS (NM_019518)	64	NM_019518	56149	Mm.276573	NM_019518	ENSMUSG00000000531	Grasp	tamalin	GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein	protein-coding
1144	chr9	110433801	110438641	+	0	NA	exon (NM_177771, exon 7 of 10)	exon (NM_177771, exon 7 of 10)	16413	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding
485	chr15	101221001	101227541	+	0	NA	promoter-TSS (NM_019518)	promoter-TSS (NM_019518)	64	NM_019518	56149	Mm.276573	NM_019518	ENSMUSG00000000531	Grasp	tamalin	GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein	protein-coding
227	chr2	134643646	134646288	+	0	NA	promoter-TSS (NM_029148)	promoter-TSS (NM_029148)	-846	NM_029148	52837	Mm.264096	NM_029148	ENSMUSG00000034723	Tmx4	2810417D04Rik|4930500L08Rik|AI843224|AW046784|D2Bwg1356e|Txndc13|mKIAA1162	thioredoxin-related transmembrane protein 4	protein-coding
902	chr5	122712812	122716128	+	0	NA	exon (NM_011026, exon 2 of 12)	exon (NM_011026, exon 2 of 12)	6926	NM_001310718	18438	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding
183	chr4	117914314	117916215	+	0	NA	promoter-TSS (NM_146152)	promoter-TSS (NM_146152)	-265	NM_146152	230673	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding
296	chr11	106821998	106824126	+	0	NA	exon (NM_025481, exon 18 of 19)	exon (NM_025481, exon 18 of 19)	33810	NM_001166685	320162	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding
471	chr11	102145422	102147853	+	0	NA	exon (NM_145829, exon 2 of 7)	exon (NM_145829, exon 2 of 7)	1124	NM_145829	217214	Mm.31686	NM_145829	ENSMUSG00000048217	Nags	1700120E20Rik|argA	N-acetylglutamate synthase	protein-coding
856	chr5	136566925	136568564	+	0	NA	promoter-TSS (NM_009986)	promoter-TSS (NM_009986)	-254	NM_001291234	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding
796	chr3	80686809	80689869	+	0	NA	non-coding (NR_152148, exon 18 of 18)	non-coding (NR_152148, exon 18 of 18)	114496	NM_013540	14800	Mm.220224	NM_013540	ENSMUSG00000033981	Gria2	GluA2|GluR-B|Glur-2|Glur2|gluR-K2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding
242	chr15	75920691	75922996	+	0	NA	promoter-TSS (NM_025412)	promoter-TSS (NM_025412)	-283	NM_025412	66194	Mm.250599	NM_025412	ENSMUSG00000022571	Pycrl	1110058B13Rik|2700073G24Rik|Pycr3	pyrroline-5-carboxylate reductase-like	protein-coding
1068	chr1	133244087	133247478	+	0	NA	promoter-TSS (NM_001160268)	promoter-TSS (NM_001160268)	-315	NM_001160268	240753	Mm.253559	NM_182930	ENSMUSG00000041757	Plekha6	9530028L01Rik|AU042621|Pepp3	pleckstrin homology domain containing, family A member 6	protein-coding
851	chr8	85230192	85231933	+	0	NA	exon (NM_146859, exon 1 of 1)	exon (NM_146859, exon 1 of 1)	565	NM_146859	258858	Mm.354727	NM_146859	ENSMUSG00000051952	Olfr371	MOR141-3	olfactory receptor 371	protein-coding
624	chr6	56796835	56800563	+	0	NA	promoter-TSS (NM_145958)	promoter-TSS (NM_145958)	-886	NM_001362213	210973	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding
798	chr3	144951684	144954046	+	0	NA	exon (NM_207208, exon 14 of 14)	exon (NM_207208, exon 14 of 14)	-20336	NM_001033199	99709	Mm.440040	NM_001033199	ENSMUSG00000074195	Clca4b	AI747448|Clca7	chloride channel accessory 4B	protein-coding
863	chr6	56796835	56800563	+	0	NA	promoter-TSS (NM_145958)	promoter-TSS (NM_145958)	-886	NM_001362213	210973	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding
350	chr11	50022516	50028428	+	0	NA	exon (NM_001290749, exon 1 of 8)	exon (NM_001290749, exon 1 of 8)	141	NM_001290749	59044	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding
456	chr11	106821998	106824126	+	0	NA	exon (NM_025481, exon 18 of 19)	exon (NM_025481, exon 18 of 19)	33810	NM_001166685	320162	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding
709	chr4	117914314	117916215	+	0	NA	promoter-TSS (NM_146152)	promoter-TSS (NM_146152)	-265	NM_146152	230673	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding
670	chr5	136566925	136568564	+	0	NA	promoter-TSS (NM_009986)	promoter-TSS (NM_009986)	-254	NM_001291234	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding
569	chr4	86310442	86333833	+	0	NA	exon (NM_029967, exon 15 of 28)	exon (NM_029967, exon 15 of 28)	236166	NM_001081096	75811	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding
658	chr6	56796835	56800563	+	0	NA	promoter-TSS (NM_145958)	promoter-TSS (NM_145958)	-886	NM_001362213	210973	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding
749	chr19	42099763	42101817	+	0	NA	exon (NM_145501, exon 2 of 9)	exon (NM_145501, exon 2 of 9)	10355	NM_145501	84095	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding
41	chr12	103690891	103692991	+	0	NA	exon (NM_026687, exon 4 of 6)	exon (NM_026687, exon 4 of 6)	2748	NM_001164742	68348	Mm.20149	NM_026687	ENSMUSG00000021081	Serpina1f	0610012A11Rik|AI327419|Serpina2|epserin	serine (or cysteine) peptidase inhibitor, clade A, member 1F	protein-coding
504	chr11	79674061	79676363	+	0	NA	promoter-TSS (NR_045898)	promoter-TSS (NR_045898)	-126	NR_045898	72218	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA
38	chr2	167529849	167544829	+	0	NA	promoter-TSS (NM_011427)	promoter-TSS (NM_011427)	-856	NM_011427	20613	Mm.2093	NM_011427	ENSMUSG00000042821	Snai1	Sna|Sna1|Snail|Snail1	snail family zinc finger 1	protein-coding
1078	chr19	41585920	41591070	+	0	NA	promoter-TSS (NR_106166)	promoter-TSS (NR_106166)	-156	NR_106166	102465884		NR_106166	ENSMUSG00000098286	Mir8091	Gm27575|mmu-mir-8091	microRNA 8091	ncRNA
458	chr11	102145422	102147853	+	0	NA	exon (NM_145829, exon 2 of 7)	exon (NM_145829, exon 2 of 7)	1124	NM_145829	217214	Mm.31686	NM_145829	ENSMUSG00000048217	Nags	1700120E20Rik|argA	N-acetylglutamate synthase	protein-coding
412	chr8	9974767	9979783	+	0	NA	promoter-TSS (NM_026868)	promoter-TSS (NM_026868)	-442	NM_026868	68904	Mm.142570	NM_026868	ENSMUSG00000040396	Abhd13	1110065L07Rik|AI463703|AI788994	abhydrolase domain containing 13	protein-coding
835	chr2	167529849	167544829	+	0	NA	promoter-TSS (NM_011427)	promoter-TSS (NM_011427)	-856	NM_011427	20613	Mm.2093	NM_011427	ENSMUSG00000042821	Snai1	Sna|Sna1|Snail|Snail1	snail family zinc finger 1	protein-coding
1115	chr11	70683559	70693049	+	0	NA	promoter-TSS (NM_178116)	promoter-TSS (NM_178116)	-199	NM_001190376	216874	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding
1012	chr8	35821991	35829287	+	0	NA	exon (NM_027998, exon 1 of 1)	exon (NM_027998, exon 1 of 1)	920	NM_027998	71908	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding
694	chr8	125896215	125899033	+	0	NA	promoter-TSS (NR_155422)	promoter-TSS (NR_155422)	-290	NR_155422	102632990	Mm.429446	NR_155422		A730098A19Rik	-	RIKEN cDNA A730098A19 gene	ncRNA
1032	chr3	144951684	144954046	+	0	NA	exon (NM_207208, exon 14 of 14)	exon (NM_207208, exon 14 of 14)	-20336	NM_001033199	99709	Mm.440040	NM_001033199	ENSMUSG00000074195	Clca4b	AI747448|Clca7	chloride channel accessory 4B	protein-coding
724	chr16	46494187	46499109	+	0	NA	exon (NM_021497, exon 1 of 7)	exon (NM_021497, exon 1 of 7)	319	NM_021496	58998	Mm.40477	NM_021495	ENSMUSG00000022656	Nectin3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113|Pvrl3	nectin cell adhesion molecule 3	protein-coding
1094	chr4	117914314	117916215	+	0	NA	promoter-TSS (NM_146152)	promoter-TSS (NM_146152)	-265	NM_146152	230673	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding
377	chr8	35821991	35829287	+	0	NA	exon (NM_027998, exon 1 of 1)	exon (NM_027998, exon 1 of 1)	920	NM_027998	71908	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding
413	chr8	70896921	70899057	+	0	NA	promoter-TSS (NM_029751)	promoter-TSS (NM_029751)	-546	NM_029751	76808	Mm.379251	NM_029751	ENSMUSG00000045128	Rpl18a	2510019J09Rik	ribosomal protein L18A	protein-coding
496	chr11	69070545	69074551	+	0	NA	promoter-TSS (NR_028566)	promoter-TSS (NR_028566)	-878	NR_028566	100216530	Mm.453052	NR_028566	ENSMUSG00000064899	Snord118	MBI-34	small nucleolar RNA, C/D box 118	snoRNA
179	chr4	107245243	107249483	+	0	NA	exon (NM_029985, exon 2 of 8)	exon (NM_029985, exon 2 of 8)	6170	NM_029985	77809	Mm.29681	NM_029985	ENSMUSG00000028617	Lrrc42	A930011F22Rik|AA536996	leucine rich repeat containing 42	protein-coding
31	chr15	99972974	99974836	+	0	NA	promoter-TSS (NR_028124)	promoter-TSS (NR_028124)	-618	NR_028124	70281	Mm.484037	NR_028124	ENSMUSG00000100084	2310068J16Rik	-	RIKEN cDNA 2310068J16 gene	ncRNA
939	chr8	86555499	86559794	+	0	NA	exon (NM_172912, exon 6 of 29)	exon (NM_172912, exon 6 of 29)	8944	NM_172912	244562	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding
581	chr14	75135561	75137720	+	0	NA	5' UTR (NM_008879, exon 1 of 17)	5' UTR (NM_008879, exon 1 of 17)	215	NM_008879	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding
338	chr11	97796579	97800949	+	0	NA	promoter-TSS (NM_010688)	promoter-TSS (NM_010688)	-801	NM_010688	16796	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding
529	chr19	42099763	42101817	+	0	NA	exon (NM_145501, exon 2 of 9)	exon (NM_145501, exon 2 of 9)	10355	NM_145501	84095	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding
499	chr11	72398736	72401203	+	0	NA	exon (NM_177776, exon 7 of 8)	exon (NM_177776, exon 7 of 8)	11213	NR_105756	102465172		NR_105756	ENSMUSG00000098658	Mir6338	Gm27678|mmu-mir-6338	microRNA 6338	ncRNA
866	chr6	42367710	42374897	+	0	NA	non-coding (NR_045169, exon 2 of 4)	non-coding (NR_045169, exon 2 of 4)	632	NR_045169	72131	Mm.105385	NR_045169	ENSMUSG00000101268	2010310C07Rik	-	RIKEN cDNA 2010310C07 gene	ncRNA
872	chr11	97796579	97800949	+	0	NA	promoter-TSS (NM_010688)	promoter-TSS (NM_010688)	-801	NM_010688	16796	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding
676	chr7	108159608	108161313	+	0	NA	promoter-TSS (NM_001011810)	promoter-TSS (NM_001011810)	-589	NM_001011810	258041	Mm.377336	NM_001011810	ENSMUSG00000108995	Olfr485	MOR204-30P	olfactory receptor 485	protein-coding
1038	chr16	5144668	5148152	+	0	NA	promoter-TSS (NM_001127725)	promoter-TSS (NM_001127725)	-699	NM_001127725	665119	Mm.102072	NM_001127725	ENSMUSG00000091712	Sec14l5	-	SEC14-like lipid binding 5	protein-coding
163	chr1	162547478	162549847	+	0	NA	promoter-TSS (NM_144877)	promoter-TSS (NM_144877)	-317	NM_144877	71449	Mm.270569	NM_144877	ENSMUSG00000026694	Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding
836	chr1	175891099	175892979	+	0	NA	exon (NM_012012, exon 7 of 15)	exon (NM_012012, exon 7 of 15)	11261	NM_012012	26909	Mm.283046	NM_012012	ENSMUSG00000039748	Exo1	5730442G03Rik|Msa	exonuclease 1	protein-coding
817	chr2	167529849	167544829	+	0	NA	promoter-TSS (NM_011427)	promoter-TSS (NM_011427)	-856	NM_011427	20613	Mm.2093	NM_011427	ENSMUSG00000042821	Snai1	Sna|Sna1|Snail|Snail1	snail family zinc finger 1	protein-coding
362	chr2	134643646	134646288	+	0	NA	promoter-TSS (NM_029148)	promoter-TSS (NM_029148)	-846	NM_029148	52837	Mm.264096	NM_029148	ENSMUSG00000034723	Tmx4	2810417D04Rik|4930500L08Rik|AI843224|AW046784|D2Bwg1356e|Txndc13|mKIAA1162	thioredoxin-related transmembrane protein 4	protein-coding
635	chr3	80682044	80683563	+	0	NA	non-coding (NR_152148, exon 18 of 18)	non-coding (NR_152148, exon 18 of 18)	120032	NM_013540	14800	Mm.220224	NM_013540	ENSMUSG00000033981	Gria2	GluA2|GluR-B|Glur-2|Glur2|gluR-K2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding
307	chr2	134643646	134646288	+	0	NA	promoter-TSS (NM_029148)	promoter-TSS (NM_029148)	-846	NM_029148	52837	Mm.264096	NM_029148	ENSMUSG00000034723	Tmx4	2810417D04Rik|4930500L08Rik|AI843224|AW046784|D2Bwg1356e|Txndc13|mKIAA1162	thioredoxin-related transmembrane protein 4	protein-coding
127	chr11	106821998	106824126	+	0	NA	exon (NM_025481, exon 18 of 19)	exon (NM_025481, exon 18 of 19)	33810	NM_001166685	320162	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding
215	chr11	103826442	103830506	+	0	NA	exon (NM_008740, exon 18 of 21)	exon (NM_008740, exon 18 of 21)	54299	NM_009521	22415	Mm.159091	NM_009521	ENSMUSG00000000125	Wnt3	Int-4|Wnt-3	wingless-type MMTV integration site family, member 3	protein-coding
867	chr6	83977943	83980064	+	0	NA	exon (NM_008717, exon 24 of 27)	exon (NM_008717, exon 24 of 27)	-29595	NM_001077694	26903	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding
158	chr11	79674061	79676363	+	0	NA	promoter-TSS (NR_045898)	promoter-TSS (NR_045898)	-126	NR_045898	72218	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA
1040	chr16	55933303	55936430	+	0	NA	promoter-TSS (NM_028815)	promoter-TSS (NM_028815)	-18	NM_001159366	74201	Mm.178427	NM_028815	ENSMUSG00000022604	Cep97	2810403B08Rik|4932439K18Rik|AA437768|E130116N02Rik|Lrriq2	centrosomal protein 97	protein-coding
511	chr11	118072277	118074922	+	0	NA	exon (NM_001167746, exon 47 of 81)	exon (NM_001167746, exon 47 of 81)	55620	NM_001167746	69926	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding
472	chr11	116237871	116239650	+	0	NA	promoter-TSS (NM_025276)	promoter-TSS (NM_025276)	-669	NM_025276	14027	Mm.293683	NM_025276	ENSMUSG00000034282	Evpl	-	envoplakin	protein-coding
221	chr2	134643646	134646288	+	0	NA	promoter-TSS (NM_029148)	promoter-TSS (NM_029148)	-846	NM_029148	52837	Mm.264096	NM_029148	ENSMUSG00000034723	Tmx4	2810417D04Rik|4930500L08Rik|AI843224|AW046784|D2Bwg1356e|Txndc13|mKIAA1162	thioredoxin-related transmembrane protein 4	protein-coding
918	chr3	90050686	90053568	+	0	NA	promoter-TSS (NM_027500)	promoter-TSS (NM_027500)	353	NM_001165985	74383	Mm.25610	NM_028475	ENSMUSG00000042520	Ubap2l	3110083O19Rik|4932431F02Rik|A430103N23Rik|C77168|Nice-4|mKIAA0144	ubiquitin-associated protein 2-like	protein-coding
903	chr5	136194430	136205083	+	0	NA	promoter-TSS (NM_025774)	promoter-TSS (NM_025774)	-802	NM_025774	66801	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding
234	chr15	101221001	101227541	+	0	NA	promoter-TSS (NM_019518)	promoter-TSS (NM_019518)	64	NM_019518	56149	Mm.276573	NM_019518	ENSMUSG00000000531	Grasp	tamalin	GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein	protein-coding
919	chr3	144951684	144954046	+	0	NA	exon (NM_207208, exon 14 of 14)	exon (NM_207208, exon 14 of 14)	-20336	NM_001033199	99709	Mm.440040	NM_001033199	ENSMUSG00000074195	Clca4b	AI747448|Clca7	chloride channel accessory 4B	protein-coding
423	chr16	97949022	97951717	+	0	NA	exon (NM_001081684, exon 2 of 2)	exon (NM_001081684, exon 2 of 2)	12253	NM_001320385	114565	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding
865	chr6	90634013	90639991	+	0	NA	intron (NM_001037493, intron 6 of 9)	intron (NM_001037493, intron 6 of 9)	17756	NM_001037493	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding
220	chr2	154379486	154382377	+	0	NA	exon (NM_009228, exon 4 of 8)	exon (NM_009228, exon 4 of 8)	-8212	NM_025876	66971	Mm.289427	NM_025876	ENSMUSG00000027487	Cdk5rap1	2310066P17Rik	CDK5 regulatory subunit associated protein 1	protein-coding
193	chr3	108096039	108100608	+	0	NA	exon (NM_008141, exon 7 of 9)	exon (NM_008141, exon 7 of 9)	5257	NM_008141	14686	Mm.439652	NM_008141	ENSMUSG00000009108	Gnat2	AW490837|Gnat-2|Gt-2|Tcalpha	guanine nucleotide binding protein, alpha transducing 2	protein-coding
990	chr19	42099763	42101817	+	0	NA	exon (NM_145501, exon 2 of 9)	exon (NM_145501, exon 2 of 9)	10355	NM_145501	84095	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding
402	chr9	110433801	110438641	+	0	NA	exon (NM_177771, exon 7 of 10)	exon (NM_177771, exon 7 of 10)	16413	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding
782	chr3	129760549	129766071	+	0	NA	non-coding (NR_040589, exon 5 of 5)	non-coding (NR_040589, exon 5 of 5)	-7988	NM_010113	13645	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding
495	chr11	72398736	72401203	+	0	NA	exon (NM_177776, exon 7 of 8)	exon (NM_177776, exon 7 of 8)	11213	NR_105756	102465172		NR_105756	ENSMUSG00000098658	Mir6338	Gm27678|mmu-mir-6338	microRNA 6338	ncRNA
311	chr2	134643646	134646288	+	0	NA	promoter-TSS (NM_029148)	promoter-TSS (NM_029148)	-846	NM_029148	52837	Mm.264096	NM_029148	ENSMUSG00000034723	Tmx4	2810417D04Rik|4930500L08Rik|AI843224|AW046784|D2Bwg1356e|Txndc13|mKIAA1162	thioredoxin-related transmembrane protein 4	protein-coding
862	chr14	75135561	75137720	+	0	NA	5' UTR (NM_008879, exon 1 of 17)	5' UTR (NM_008879, exon 1 of 17)	215	NM_008879	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding
744	chr7	126862615	126865802	+	0	NA	exon (NM_172746, exon 4 of 7)	exon (NM_172746, exon 4 of 7)	2236	NM_172746	233876	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding
1065	chr17	46247005	46249481	+	0	NA	promoter-TSS (NM_009085)	promoter-TSS (NM_009085)	163	NM_145353	28064	Mm.248769	NM_145353	ENSMUSG00000071074	Yipf3	C6orf109|D17Wsu94e|KLIP1	Yip1 domain family, member 3	protein-coding
253	chr2	154379486	154382377	+	0	NA	exon (NM_009228, exon 4 of 8)	exon (NM_009228, exon 4 of 8)	-8212	NM_025876	66971	Mm.289427	NM_025876	ENSMUSG00000027487	Cdk5rap1	2310066P17Rik	CDK5 regulatory subunit associated protein 1	protein-coding
729	chr8	105825913	105828208	+	0	NA	promoter-TSS (NM_024445)	promoter-TSS (NM_024445)	290	NM_145824	74334	Mm.4206	NM_145824	ENSMUSG00000037415	Ranbp10	4432417N03Rik	RAN binding protein 10	protein-coding
661	chr6	42367710	42374897	+	0	NA	non-coding (NR_045169, exon 2 of 4)	non-coding (NR_045169, exon 2 of 4)	632	NR_045169	72131	Mm.105385	NR_045169	ENSMUSG00000101268	2010310C07Rik	-	RIKEN cDNA 2010310C07 gene	ncRNA
795	chr3	89181136	89183897	+	0	NA	promoter-TSS (NM_001014995)	promoter-TSS (NM_001014995)	-627	NM_001014995	68521	Mm.274708	NM_001014995	ENSMUSG00000032657	Fam189b	1110013L07Rik	family with sequence similarity 189, member B	protein-coding
285	chr11	79674061	79676363	+	0	NA	promoter-TSS (NR_045898)	promoter-TSS (NR_045898)	-126	NR_045898	72218	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA
961	chr15	76699844	76702870	+	0	NA	promoter-TSS (NM_027122)	promoter-TSS (NM_027122)	-185	NM_027122	69572	Mm.34920	NM_027122	ENSMUSG00000019080	Mfsd3	2310010G13Rik	major facilitator superfamily domain containing 3	protein-coding
1113	chr11	69070545	69074551	+	0	NA	promoter-TSS (NR_028566)	promoter-TSS (NR_028566)	-878	NR_028566	100216530	Mm.453052	NR_028566	ENSMUSG00000064899	Snord118	MBI-34	small nucleolar RNA, C/D box 118	snoRNA
509	chr11	79674061	79676363	+	0	NA	promoter-TSS (NR_045898)	promoter-TSS (NR_045898)	-126	NR_045898	72218	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA
738	chr16	46494187	46499109	+	0	NA	exon (NM_021497, exon 1 of 7)	exon (NM_021497, exon 1 of 7)	319	NM_021496	58998	Mm.40477	NM_021495	ENSMUSG00000022656	Nectin3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113|Pvrl3	nectin cell adhesion molecule 3	protein-coding
812	chr3	144951684	144954046	+	0	NA	exon (NM_207208, exon 14 of 14)	exon (NM_207208, exon 14 of 14)	-20336	NM_001033199	99709	Mm.440040	NM_001033199	ENSMUSG00000074195	Clca4b	AI747448|Clca7	chloride channel accessory 4B	protein-coding
5	chr4	57913389	57918174	+	0	NA	exon (NM_178727, exon 1 of 2)	exon (NM_178727, exon 1 of 2)	483	NM_178727	242484	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding
20	chr3	90050686	90053568	+	0	NA	promoter-TSS (NM_027500)	promoter-TSS (NM_027500)	353	NM_001165985	74383	Mm.25610	NM_028475	ENSMUSG00000042520	Ubap2l	3110083O19Rik|4932431F02Rik|A430103N23Rik|C77168|Nice-4|mKIAA0144	ubiquitin-associated protein 2-like	protein-coding
764	chr1	162547478	162549847	+	0	NA	promoter-TSS (NM_144877)	promoter-TSS (NM_144877)	-317	NM_144877	71449	Mm.270569	NM_144877	ENSMUSG00000026694	Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding
492	chr11	118072277	118074922	+	0	NA	exon (NM_001167746, exon 47 of 81)	exon (NM_001167746, exon 47 of 81)	55620	NM_001167746	69926	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding
534	chr19	31663869	31665600	+	0	NA	promoter-TSS (NM_011160)	promoter-TSS (NM_011160)	-364	NM_011160	19091	Mm.381170	NM_011160	ENSMUSG00000052920	Prkg1	AW125416|CGKI|Gm19690|Prkg1b|Prkgr1b	protein kinase, cGMP-dependent, type I	protein-coding
397	chr2	167529849	167544829	+	0	NA	promoter-TSS (NM_011427)	promoter-TSS (NM_011427)	-856	NM_011427	20613	Mm.2093	NM_011427	ENSMUSG00000042821	Snai1	Sna|Sna1|Snail|Snail1	snail family zinc finger 1	protein-coding
333	chr11	69070545	69074551	+	0	NA	promoter-TSS (NR_028566)	promoter-TSS (NR_028566)	-878	NR_028566	100216530	Mm.453052	NR_028566	ENSMUSG00000064899	Snord118	MBI-34	small nucleolar RNA, C/D box 118	snoRNA
891	chr15	101221001	101227541	+	0	NA	promoter-TSS (NM_019518)	promoter-TSS (NM_019518)	64	NM_019518	56149	Mm.276573	NM_019518	ENSMUSG00000000531	Grasp	tamalin	GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein	protein-coding
134	chr11	79674061	79676363	+	0	NA	promoter-TSS (NR_045898)	promoter-TSS (NR_045898)	-126	NR_045898	72218	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA
186	chr6	119416599	119418389	+	0	NA	promoter-TSS (NM_197985)	promoter-TSS (NM_197985)	34	NM_197985	68465	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding
682	chr10	81021311	81029609	+	0	NA	promoter-TSS (NM_145217)	promoter-TSS (NM_145217)	-83	NM_145217	208666	Mm.44995	NM_145217	ENSMUSG00000043670	Diras1	Di-Ras1|Gbts1|RIG	DIRAS family, GTP-binding RAS-like 1	protein-coding
256	chr4	117914314	117916215	+	0	NA	promoter-TSS (NM_146152)	promoter-TSS (NM_146152)	-265	NM_146152	230673	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding
106	chr15	85814962	85818572	+	0	NA	exon (NM_011105, exon 1 of 1)	exon (NM_011105, exon 1 of 1)	4966	NM_011105	18766	Mm.89965	NM_011105	ENSMUSG00000052496	Pkdrej	-	polycystin (PKD) family receptor for egg jelly	protein-coding
1033	chr3	95158642	95161842	+	0	NA	promoter-TSS (NM_001272024)	promoter-TSS (NM_001272024)	-178	NM_001272024	20360	Mm.23662	NM_011351	ENSMUSG00000038777	Sema6c	Semay|mKIAA1869	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	protein-coding
464	chr5	122706371	122708458	+	0	NA	promoter-TSS (NM_011026)	promoter-TSS (NM_011026)	-130	NM_011026	18438	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding
160	chr11	118072277	118074922	+	0	NA	exon (NM_001167746, exon 47 of 81)	exon (NM_001167746, exon 47 of 81)	55620	NM_001167746	69926	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding
1095	chr8	125896215	125899033	+	0	NA	promoter-TSS (NR_155422)	promoter-TSS (NR_155422)	-290	NR_155422	102632990	Mm.429446	NR_155422		A730098A19Rik	-	RIKEN cDNA A730098A19 gene	ncRNA
261	chr19	42099763	42101817	+	0	NA	exon (NM_145501, exon 2 of 9)	exon (NM_145501, exon 2 of 9)	10355	NM_145501	84095	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding
258	chr19	54044159	54048319	+	0	NA	exon (NM_007417, exon 1 of 1)	exon (NM_007417, exon 1 of 1)	1057	NM_007417	11551	Mm.235195	NM_007417	ENSMUSG00000033717	Adra2a	AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR	adrenergic receptor, alpha 2a	protein-coding
1112	chr11	72398736	72401203	+	0	NA	exon (NM_177776, exon 7 of 8)	exon (NM_177776, exon 7 of 8)	11213	NR_105756	102465172		NR_105756	ENSMUSG00000098658	Mir6338	Gm27678|mmu-mir-6338	microRNA 6338	ncRNA
1069	chr1	175891099	175892979	+	0	NA	exon (NM_012012, exon 7 of 15)	exon (NM_012012, exon 7 of 15)	11261	NM_012012	26909	Mm.283046	NM_012012	ENSMUSG00000039748	Exo1	5730442G03Rik|Msa	exonuclease 1	protein-coding
820	chr7	119440833	119450163	+	0	NA	exon (NM_025989, exon 10 of 11)	exon (NM_025989, exon 10 of 11)	13774	NM_025989	67133	Mm.46403	NM_025989	ENSMUSG00000030954	Gp2	2310037I18Rik|AV060639	glycoprotein 2 (zymogen granule membrane)	protein-coding
693	chr9	121764987	121768002	+	0	NA	exon (NM_001166644, exon 4 of 6)	exon (NM_001166644, exon 4 of 6)	6461	NM_001166644	270210	Mm.473702	NM_001166644	ENSMUSG00000013419	Zfp651	4732420M22Rik|BC030045|R74626	zinc finger protein 651	protein-coding
617	chr11	118072277	118074922	+	0	NA	exon (NM_001167746, exon 47 of 81)	exon (NM_001167746, exon 47 of 81)	55620	NM_001167746	69926	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding
859	chr5	134930717	134933866	+	0	NA	promoter-TSS (NM_024479)	promoter-TSS (NM_024479)	-82	NM_001359538	79565	Mm.34235	NM_024479	ENSMUSG00000040557	Mettl27	AW492986|BC002286|Wbscr27	methyltransferase like 27	protein-coding
912	chr3	108096039	108100608	+	0	NA	exon (NM_008141, exon 7 of 9)	exon (NM_008141, exon 7 of 9)	5257	NM_008141	14686	Mm.439652	NM_008141	ENSMUSG00000009108	Gnat2	AW490837|Gnat-2|Gt-2|Tcalpha	guanine nucleotide binding protein, alpha transducing 2	protein-coding
540	chr2	154379486	154382377	+	0	NA	exon (NM_009228, exon 4 of 8)	exon (NM_009228, exon 4 of 8)	-8212	NM_025876	66971	Mm.289427	NM_025876	ENSMUSG00000027487	Cdk5rap1	2310066P17Rik	CDK5 regulatory subunit associated protein 1	protein-coding
769	chr3	138413332	138416623	+	0	NA	promoter-TSS (NM_011996)	promoter-TSS (NM_011996)	-520	NM_011996	26876	Mm.158750	NM_011996	ENSMUSG00000037797	Adh4	Adh2	alcohol dehydrogenase 4 (class II), pi polypeptide	protein-coding
345	chr11	103826442	103830506	+	0	NA	exon (NM_008740, exon 18 of 21)	exon (NM_008740, exon 18 of 21)	54299	NM_009521	22415	Mm.159091	NM_009521	ENSMUSG00000000125	Wnt3	Int-4|Wnt-3	wingless-type MMTV integration site family, member 3	protein-coding
747	chr19	41585920	41591070	+	0	NA	promoter-TSS (NR_106166)	promoter-TSS (NR_106166)	-156	NR_106166	102465884		NR_106166	ENSMUSG00000098286	Mir8091	Gm27575|mmu-mir-8091	microRNA 8091	ncRNA
1083	chr19	42099763	42101817	+	0	NA	exon (NM_145501, exon 2 of 9)	exon (NM_145501, exon 2 of 9)	10355	NM_145501	84095	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding
19	chr3	9247518	9253358	+	0	NA	promoter-TSS (NM_177660)	promoter-TSS (NM_177660)	-129	NM_177660	229055	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding
515	chr11	97796579	97800949	+	0	NA	promoter-TSS (NM_010688)	promoter-TSS (NM_010688)	-801	NM_010688	16796	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding
246	chr15	97843679	97846360	+	0	NA	promoter-TSS (NM_001204279)	promoter-TSS (NM_001204279)	-517	NM_001204279	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding
72	chr7	119440833	119450163	+	0	NA	exon (NM_025989, exon 10 of 11)	exon (NM_025989, exon 10 of 11)	13774	NM_025989	67133	Mm.46403	NM_025989	ENSMUSG00000030954	Gp2	2310037I18Rik|AV060639	glycoprotein 2 (zymogen granule membrane)	protein-coding
181	chr4	115495412	115498050	+	0	NA	promoter-TSS (NM_007822)	promoter-TSS (NM_007822)	-590	NM_007822	13119	Mm.250901	NM_007822	ENSMUSG00000028715	Cyp4a14	AI314743	cytochrome P450, family 4, subfamily a, polypeptide 14	protein-coding
500	chr11	106821998	106824126	+	0	NA	exon (NM_025481, exon 18 of 19)	exon (NM_025481, exon 18 of 19)	33810	NM_001166685	320162	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding
322	chr15	90566402	90577684	+	0	NA	exon (NM_025815, exon 8 of 20)	exon (NM_025815, exon 8 of 20)	107345	NM_001357979	66871	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding
610	chr17	46247005	46249481	+	0	NA	promoter-TSS (NM_009085)	promoter-TSS (NM_009085)	163	NM_145353	28064	Mm.248769	NM_145353	ENSMUSG00000071074	Yipf3	C6orf109|D17Wsu94e|KLIP1	Yip1 domain family, member 3	protein-coding
1079	chr19	54044159	54048319	+	0	NA	exon (NM_007417, exon 1 of 1)	exon (NM_007417, exon 1 of 1)	1057	NM_007417	11551	Mm.235195	NM_007417	ENSMUSG00000033717	Adra2a	AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR	adrenergic receptor, alpha 2a	protein-coding
1116	chr11	72398736	72401203	+	0	NA	exon (NM_177776, exon 7 of 8)	exon (NM_177776, exon 7 of 8)	11213	NR_105756	102465172		NR_105756	ENSMUSG00000098658	Mir6338	Gm27678|mmu-mir-6338	microRNA 6338	ncRNA
612	chr17	32009464	32013015	+	0	NA	exon (NM_028902, exon 5 of 8)	exon (NM_028902, exon 5 of 8)	23269	NM_028902	74377	Mm.75856	NM_028902	ENSMUSG00000002076	Hsf2bp	4932437G14Rik	heat shock transcription factor 2 binding protein	protein-coding
828	chr12	104113173	104119165	+	0	NA	exon (NM_001167705, exon 2 of 5)	exon (NM_001167705, exon 2 of 5)	3445	NM_001167705	74069	Mm.159128	NM_028740	ENSMUSG00000041536	Serpina3a	-	serine (or cysteine) peptidase inhibitor, clade A, member 3A	protein-coding
22	chr3	37419015	37421147	+	0	NA	promoter-TSS (NM_001291044)	promoter-TSS (NM_001291044)	131	NM_001163511	57815	Mm.172679	NM_021343	ENSMUSG00000027722	Spata5	2510048F20Rik|C78064|Spaf	spermatogenesis associated 5	protein-coding
995	chr8	109774061	109781273	+	0	NA	promoter-TSS (NM_009677)	promoter-TSS (NM_009677)	-916	NM_001301211	11765	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding
1135	chr7	119440833	119450163	+	0	NA	exon (NM_025989, exon 10 of 11)	exon (NM_025989, exon 10 of 11)	13774	NM_025989	67133	Mm.46403	NM_025989	ENSMUSG00000030954	Gp2	2310037I18Rik|AV060639	glycoprotein 2 (zymogen granule membrane)	protein-coding
143	chr6	48531503	48533696	+	0	NA	non-coding (NR_015597, exon 7 of 7)	non-coding (NR_015597, exon 7 of 7)	4875	NR_130985	69432		NR_130985	ENSMUSG00000097716	1700026J14Rik	-	RIKEN cDNA 1700026J14 gene	ncRNA
562	chr11	79674061	79676363	+	0	NA	promoter-TSS (NR_045898)	promoter-TSS (NR_045898)	-126	NR_045898	72218	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA
166	chr1	164144042	164158132	+	0	NA	promoter-TSS (NM_007976)	promoter-TSS (NM_007976)	-748	NM_007976	14067	Mm.12900	NM_007976	ENSMUSG00000026579	F5	AI173222|Cf-5|Cf5	coagulation factor V	protein-coding
1027	chr3	108096039	108100608	+	0	NA	exon (NM_008141, exon 7 of 9)	exon (NM_008141, exon 7 of 9)	5257	NM_008141	14686	Mm.439652	NM_008141	ENSMUSG00000009108	Gnat2	AW490837|Gnat-2|Gt-2|Tcalpha	guanine nucleotide binding protein, alpha transducing 2	protein-coding
298	chr11	86543885	86546202	+	0	NA	promoter-TSS (NM_001199047)	promoter-TSS (NM_001199047)	52	NM_019756	56427	Mm.383207	NM_019756	ENSMUSG00000020513	Tubd1	4930550G19Rik|Tubd	tubulin, delta 1	protein-coding
546	chr2	155944494	155947639	+	0	NA	promoter-TSS (NM_008109)	promoter-TSS (NM_008109)	-699	NM_008109	14563	Mm.4744	NM_008109	ENSMUSG00000038259	Gdf5	BMP-14|Cdmp-1|bp|brp	growth differentiation factor 5	protein-coding
988	chr19	40723258	40728905	+	0	NA	exon (NM_009848, exon 6 of 10)	exon (NM_009848, exon 6 of 10)	66311	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding
185	chr4	86340939	86345226	+	0	NA	exon (NM_029967, exon 18 of 28)	exon (NM_029967, exon 18 of 28)	215221	NM_001081096	75811	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding
622	chr8	124662836	124664772	+	0	NA	promoter-TSS (NM_175149)	promoter-TSS (NM_175149)	-435	NM_175149	69551	Mm.261920	NM_175149	ENSMUSG00000031983	2310022B05Rik	-	RIKEN cDNA 2310022B05 gene	protein-coding
341	chr11	29782081	29786119	+	0	NA	exon (NM_146016, exon 26 of 42)	exon (NM_146016, exon 26 of 42)	41568	NM_176829	216622	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding
843	chr16	10540210	10547389	+	0	NA	promoter-TSS (NM_021428)	promoter-TSS (NM_021428)	-745	NM_021428	58239	Mm.353006	NM_021428	ENSMUSG00000038055	Dexi	1810029J14Rik|AI836170|AW413143|D16Bwg0586e|Myle	dexamethasone-induced transcript	protein-coding
352	chr1	175891099	175892979	+	0	NA	exon (NM_012012, exon 7 of 15)	exon (NM_012012, exon 7 of 15)	11261	NM_012012	26909	Mm.283046	NM_012012	ENSMUSG00000039748	Exo1	5730442G03Rik|Msa	exonuclease 1	protein-coding
1136	chr7	140966520	140969415	+	0	NA	promoter-TSS (NM_001112715)	promoter-TSS (NM_001112715)	-61	NM_001360727	68713	Mm.175661	NM_026820	ENSMUSG00000025491	Ifitm1	1110036C17Rik|DSPA2a|Mil-2|Mil2	interferon induced transmembrane protein 1	protein-coding
217	chr11	79674061	79676363	+	0	NA	promoter-TSS (NR_045898)	promoter-TSS (NR_045898)	-126	NR_045898	72218	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA
813	chr3	95158642	95161842	+	0	NA	promoter-TSS (NM_001272024)	promoter-TSS (NM_001272024)	-178	NM_001272024	20360	Mm.23662	NM_011351	ENSMUSG00000038777	Sema6c	Semay|mKIAA1869	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	protein-coding
921	chr3	86785946	86788725	+	0	NA	exon (NM_001195496, exon 17 of 17)	exon (NM_001195496, exon 17 of 17)	133549	NM_001357460	70762	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding
1108	chr1	174171168	174173975	+	0	NA	promoter-TSS (NM_011465)	promoter-TSS (NM_011465)	-205	NM_011465	20739	Mm.200611	NM_011465	ENSMUSG00000026532	Spta1	AF093576|AI451697|Spna-1|Spna1|ha|ihj|nmf4|sph	spectrin alpha, erythrocytic 1	protein-coding
63	chr11	79674061	79676363	+	0	NA	promoter-TSS (NR_045898)	promoter-TSS (NR_045898)	-126	NR_045898	72218	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA
368	chr2	154379486	154382377	+	0	NA	exon (NM_009228, exon 4 of 8)	exon (NM_009228, exon 4 of 8)	-8212	NM_025876	66971	Mm.289427	NM_025876	ENSMUSG00000027487	Cdk5rap1	2310066P17Rik	CDK5 regulatory subunit associated protein 1	protein-coding
1030	chr3	89181136	89183897	+	0	NA	promoter-TSS (NM_001014995)	promoter-TSS (NM_001014995)	-627	NM_001014995	68521	Mm.274708	NM_001014995	ENSMUSG00000032657	Fam189b	1110013L07Rik	family with sequence similarity 189, member B	protein-coding
455	chr4	86340939	86345226	+	0	NA	exon (NM_029967, exon 18 of 28)	exon (NM_029967, exon 18 of 28)	215221	NM_001081096	75811	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding
827	chr12	82396376	82398596	+	0	NA	exon (NM_172579, exon 9 of 21)	exon (NM_172579, exon 9 of 21)	86137	NM_172579	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding
384	chr8	85230192	85231933	+	0	NA	exon (NM_146859, exon 1 of 1)	exon (NM_146859, exon 1 of 1)	565	NM_146859	258858	Mm.354727	NM_146859	ENSMUSG00000051952	Olfr371	MOR141-3	olfactory receptor 371	protein-coding
1049	chr4	117914314	117916215	+	0	NA	promoter-TSS (NM_146152)	promoter-TSS (NM_146152)	-265	NM_146152	230673	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding
449	chr4	107245243	107249483	+	0	NA	exon (NM_029985, exon 2 of 8)	exon (NM_029985, exon 2 of 8)	6170	NM_029985	77809	Mm.29681	NM_029985	ENSMUSG00000028617	Lrrc42	A930011F22Rik|AA536996	leucine rich repeat containing 42	protein-coding
1146	chr9	44133025	44136635	+	0	NA	promoter-TSS (NR_152189)	promoter-TSS (NR_152189)	172	NM_001359530	84004	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding
1109	chr1	164144042	164158132	+	0	NA	promoter-TSS (NM_007976)	promoter-TSS (NM_007976)	-748	NM_007976	14067	Mm.12900	NM_007976	ENSMUSG00000026579	F5	AI173222|Cf-5|Cf5	coagulation factor V	protein-coding
260	chr19	45000252	45003291	+	0	NA	exon (NM_011976, exon 15 of 15)	exon (NM_011976, exon 15 of 15)	-3892	NM_001348254	226153	Mm.105585	NM_153796	ENSMUSG00000025209	Twnk	D19Ertd626e|PEO|Peo1|Twinl	twinkle mtDNA helicase	protein-coding
325	chr15	101221001	101227541	+	0	NA	promoter-TSS (NM_019518)	promoter-TSS (NM_019518)	64	NM_019518	56149	Mm.276573	NM_019518	ENSMUSG00000000531	Grasp	tamalin	GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein	protein-coding
60	chr11	97796579	97800949	+	0	NA	promoter-TSS (NM_010688)	promoter-TSS (NM_010688)	-801	NM_010688	16796	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding
118	chr7	73808866	73811257	+	0	NA	non-coding (NR_077222, exon 4 of 4)	non-coding (NR_077222, exon 4 of 4)	6442	NR_077222	100579147	Mm.109205	NR_077222	ENSMUSG00000074067	Gm10619	4932443D20	predicted gene 10619	ncRNA
