PeakID (cmd=annotatePeaks.pl ./example/K562_classification_example/tmp/anchor2.tmp hg19)	Chr	Start	End	Strand	Peak Score	Focus Ratio/Region Size	Annotation	Detailed Annotation	Distance to TSS	Nearest PromoterID	Entrez ID	Nearest Unigene	Nearest Refseq	Nearest Ensembl	Gene Name	Gene Alias	Gene Description	Gene Type
986	chr17	37684650	37689456	+	0	NA	exon (NM_016507, exon 14 of 14)	exon (NM_016507, exon 14 of 14)	69289	NM_016507	51755	Hs.345028	NM_015083	ENSG00000167258	CDK12	CRK7|CRKR|CRKRS	cyclin dependent kinase 12	protein-coding
559	chr21	38761184	38766863	+	0	NA	intron (NM_001347723, intron 1 of 10)	intron (NM_001347723, intron 1 of 10)	24164	NM_101395	1859	Hs.368240	NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
982	chr6	38745711	38748039	+	0	NA	intron (NM_001206927, intron 14 of 92)	intron (NM_001206927, intron 14 of 92)	63758	NM_001206927	1769	Hs.520106	NM_001371	ENSG00000124721	DNAH8	ATPase|hdhc9	dynein axonemal heavy chain 8	protein-coding
429	chr1	154284145	154287375	+	0	NA	Intergenic	Intergenic	-7832	NM_080429	89872	Hs.259048	NM_080429	ENSG00000143595	AQP10	AQPA_HUMAN	aquaporin 10	protein-coding
305	chr12	9064571	9068211	+	0	NA	promoter-TSS (NM_004426)	promoter-TSS (NM_004426)	-925	NM_004426	1911	Hs.744902	NM_004426	ENSG00000111752	PHC1	EDR1|HPH1|MCPH11|RAE28	polyhomeotic homolog 1	protein-coding
988	chr3	176995238	177003783	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-12720	NR_047465	100820709	Hs.518409	NR_047465	ENSG00000203645	LINC00501	-	long intergenic non-protein coding RNA 501	ncRNA
869	chrX	41300502	41303029	+	0	NA	Intergenic	CpG	-4948	NM_022567	60506	Hs.302019	NM_022567	ENSG00000188937	NYX	CLRP|CSNB1|CSNB1A|CSNB4|NBM1	nyctalopin	protein-coding
488	chr10	99547097	99551891	+	0	NA	Intergenic	MIR3|SINE|MIR	-17738	NM_003015	6425	Hs.279565	NM_003015	ENSG00000120057	SFRP5	SARP3	secreted frizzled related protein 5	protein-coding
607	chr20	50103266	50111863	+	0	NA	intron (NM_001258296, intron 3 of 10)	intron (NM_001258296, intron 3 of 10)	-38050	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
145	chr2	242907222	242909396	+	0	NA	intron (NR_110220, intron 3 of 3)	MER65D|LTR|ERV1	-4525	NR_110592	102723927	Hs.733585	NR_110592	ENSG00000237940	LINC01238	-	long intergenic non-protein coding RNA 1238	ncRNA
513	chr22	39376589	39381713	+	0	NA	intron (NM_004900, intron 1 of 7)	AluSg|SINE|Alu	747	NM_004900	9582	Hs.226307	NM_004900	ENSG00000179750	APOBEC3B	A3B|APOBEC1L|ARCD3|ARP4|DJ742C19.2|PHRBNL|bK150C2.2	apolipoprotein B mRNA editing enzyme catalytic subunit 3B	protein-coding
344	chr14	35338543	35347081	+	0	NA	intron (NM_182648, intron 2 of 25)	intron (NM_182648, intron 2 of 25)	2041	NM_182648	11177	Hs.509140	NM_013448	ENSG00000198604	BAZ1A	ACF1|WALp1|WCRF180|hACF1	bromodomain adjacent to zinc finger domain 1A	protein-coding
146	chr7	5564354	5574662	+	0	NA	intron (NM_001101, intron 1 of 5)	CpG-23985	832	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	actin beta	protein-coding
826	chr19	49951136	49959668	+	0	NA	promoter-TSS (NM_017916)	promoter-TSS (NM_017916)	-287	NM_017916	55011	Hs.5245	NM_017916	ENSG00000104872	PIH1D1	NOP17	PIH1 domain containing 1	protein-coding
356	chr11	119119780	119123341	+	0	NA	intron (NM_005188, intron 2 of 15)	AluSz6|SINE|Alu	44574	NM_005188	867	Hs.504096	NM_005188	ENSG00000110395	CBL	C-CBL|CBL2|FRA11B|NSLL|RNF55	Cbl proto-oncogene	protein-coding
871	chr9	82184449	82189597	+	0	NA	non-coding (NR_104239, exon 1 of 21)	non-coding (NR_104239, exon 1 of 21)	335	NM_001282760	7091	Hs.444213	NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|ESG|ESG4|GRG4|Grg-4	transducin like enhancer of split 4	protein-coding
458	chr17	45567883	45572119	+	0	NA	promoter-TSS (NR_033934)	promoter-TSS (NR_033934)	-15	NR_033934	653479	Hs.537279	NR_033934		MRPL45P2	-	mitochondrial ribosomal protein L45 pseudogene 2	pseudo
879	chr20	49287764	49296002	+	0	NA	intron (NM_001290268, intron 1 of 21)	MIRb|SINE|MIR	16184	NR_110890	140876	Hs.372578	NM_080829	ENSG00000042062	RIPOR3	C20orf175|C20orf176|FAM65C	RIPOR family member 3	protein-coding
707	chr5	10756211	10765823	+	0	NA	intron (NM_001291963, intron 1 of 2)	CpG	370	NM_001291963	1611	Hs.75189	NM_004394	ENSG00000112977	DAP	-	death associated protein	protein-coding
674	chr16	89447517	89451774	+	0	NA	intron (NM_013275, intron 2 of 12)	intron (NM_013275, intron 2 of 12)	-47681	NR_110932	101927817	Hs.667942	NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
451	chr22	26906161	26911042	+	0	NA	promoter-TSS (NM_001346862)	promoter-TSS (NM_001346862)	103	NR_144529	100507599	Hs.405877	NR_144529		LOC100507599	-	uncharacterized LOC100507599	ncRNA
251	chr15	45378634	45380762	+	0	NA	Intergenic	L2c|LINE|L2	26661	NM_014080	50506	Hs.71377	NM_014080	ENSG00000140279	DUOX2	LNOX2|NOXEF2|P138-TOX|TDH6|THOX2	dual oxidase 2	protein-coding
485	chr5	176325221	176348268	+	0	NA	intron (NM_016290, intron 11 of 14)	intron (NM_016290, intron 11 of 14)	-10411	NM_002115	3101	Hs.411695	NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3	protein-coding
366	chr19	37567160	37571670	+	0	NA	non-coding (NR_138039, exon 1 of 6)	non-coding (NR_138039, exon 1 of 6)	291	NM_001329518	147923	Hs.444992	NM_144689	ENSG00000197050	ZNF420	APAK	zinc finger protein 420	protein-coding
829	chr10	7445986	7454504	+	0	NA	intron (NM_001029880, intron 1 of 20)	CpG	1058	NM_001018039	57713	Hs.407983	NM_001018039	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
404	chr3	157825781	157831535	+	0	NA	intron (NM_001271838, intron 1 of 9)	intron (NM_001271838, intron 1 of 9)	817	NM_001271834	51319	Hs.591283	NM_016625	ENSG00000174891	RSRC1	BM-011|SFRS21|SRrp53	arginine and serine rich coiled-coil 1	protein-coding
499	chr6	43979479	43981063	+	0	NA	intron (NR_125864, intron 1 of 4)	intron (NR_125864, intron 1 of 4)	-8884	NR_125865	101929705	Hs.670378	NR_125864	ENSG00000237686	LOC101929705	-	uncharacterized LOC101929705	ncRNA
259	chr10	75814834	75818704	+	0	NA	intron (NM_014000, intron 2 of 21)	AluJr4|SINE|Alu	58897	NM_003373	7414	Hs.643896	NM_003373	ENSG00000035403	VCL	CMD1W|CMH15|HEL114|MV|MVCL	vinculin	protein-coding
904	chr9	139403179	139408942	+	0	NA	intron (NM_017617, intron 15 of 33)	intron (NM_017617, intron 15 of 33)	8018	NR_039820	100616242		NR_039820	ENSG00000263403	MIR4673	-	microRNA 4673	ncRNA
550	chr15	65138921	65141237	+	0	NA	intron (NM_001195059, intron 1 of 4)	intron (NM_001195059, intron 1 of 4)	5997	NM_025201	80301	Hs.709337	NM_025201	ENSG00000241839	PLEKHO2	PLEKHQ1|PP1628|pp9099	pleckstrin homology domain containing O2	protein-coding
245	chr14	51714384	51716082	+	0	NA	intron (NM_030755, intron 4 of 7)	intron (NM_030755, intron 4 of 7)	8347	NM_030755	81542	Hs.125221	NM_030755	ENSG00000139921	TMX1	PDIA11|TMX|TXNDC|TXNDC1	thioredoxin related transmembrane protein 1	protein-coding
506	chr5	43510878	43517600	+	0	NA	intron (NM_198566, intron 1 of 12)	intron (NM_198566, intron 1 of 12)	1034	NM_198566	375444	Hs.661641	NM_198566	ENSG00000172244	C5orf34	-	chromosome 5 open reading frame 34	protein-coding
531	chr21	45492877	45495337	+	0	NA	promoter-TSS (NM_001351709)	promoter-TSS (NM_001351709)	-98	NM_001351709	7109	Hs.126221	NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|TMEM1|TRS130|TRS30	trafficking protein particle complex 10	protein-coding
221	chr14	35181779	35185086	+	0	NA	promoter-TSS (NM_021914)	promoter-TSS (NM_021914)	329	NM_001243645	1073	Hs.180141	NM_021914	ENSG00000165410	CFL2	NEM7	cofilin 2	protein-coding
441	chr2	33242035	33251680	+	0	NA	intron (NM_206943, intron 3 of 33)	intron (NM_206943, intron 3 of 33)	74488	NM_206943	4052	Hs.619315	NM_000627	ENSG00000049323	LTBP1	-	latent transforming growth factor beta binding protein 1	protein-coding
204	chr21	36246858	36249078	+	0	NA	intron (NM_001001890, intron 2 of 5)	intron (NM_001001890, intron 2 of 5)	13019	NM_001001890	861	Hs.149261	NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	runt related transcription factor 1	protein-coding
827	chr7	91760467	91766405	+	0	NA	promoter-TSS (NR_122109)	promoter-TSS (NR_122109)	404	NM_000786	1595	Hs.417077	NM_000786	ENSG00000001630	CYP51A1	CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1	cytochrome P450 family 51 subfamily A member 1	protein-coding
142	chr6	26111395	26144955	+	0	NA	Intergenic	AluSx1|SINE|Alu	3802	NM_003512	8334	Hs.484950	NM_003512	ENSG00000180573	HIST1H2AC	H2A/l|H2AFL|dJ221C16.4	histone cluster 1 H2A family member c	protein-coding
212	chr22	19591813	19604350	+	0	NA	Intergenic	Intergenic	-43719	NR_024381	150185	Hs.719752	NR_024381		LINC00895	-	long intergenic non-protein coding RNA 895	ncRNA
971	chr17	29638068	29643156	+	0	NA	intron (NM_006495, intron 1 of 1)	AluSx1|SINE|Alu	518	NM_006495	2124	Hs.5509	NM_006495	ENSG00000185862	EVI2B	CD361|D17S376|EVDB	ecotropic viral integration site 2B	protein-coding
659	chr20	37658860	37660217	+	0	NA	intron (NM_021931, intron 20 of 21)	AluSx|SINE|Alu	68557	NM_021931	60625	Hs.444520	NM_021931	ENSG00000101452	DHX35	C20orf15|DDX35|KAIA0875	DEAH-box helicase 35	protein-coding
279	chr7	140712789	140716532	+	0	NA	promoter-TSS (NM_016071)	promoter-TSS (NM_016071)	121	NM_053035	51650	Hs.416207	NM_016071	ENSG00000090263	MRPS33	CGI-139|MRP-S33|PTD003|S33mt	mitochondrial ribosomal protein S33	protein-coding
51	chr10	101377061	101384367	+	0	NA	promoter-TSS (NM_031212)	promoter-TSS (NM_031212)	-493	NM_031212	81894	Hs.403790	NM_031212	ENSG00000155287	SLC25A28	MFRN2|MRS3/4|MRS4L|NPD016	solute carrier family 25 member 28	protein-coding
70	chr1	44455736	44458334	+	0	NA	promoter-TSS (NR_146064)	promoter-TSS (NR_146064)	-233	NM_152499	149473	Hs.632394	NM_152499	ENSG00000159214	CCDC24	-	coiled-coil domain containing 24	protein-coding
105	chr4	123712658	123734024	+	0	NA	Intergenic	L1MC4|LINE|L1	-24522	NM_002006	2247	Hs.284244	NM_002006	ENSG00000138685	FGF2	BFGF|FGF-2|FGFB|HBGF-2	fibroblast growth factor 2	protein-coding
98	chr6	28315227	28326879	+	0	NA	intron (NM_001242894, intron 2 of 6)	intron (NM_001242894, intron 2 of 6)	919	NM_145909	64288	Hs.656413	NM_030899	ENSG00000235109	ZSCAN31	ZNF20-Lp|ZNF310P|ZNF323	zinc finger and SCAN domain containing 31	protein-coding
69	chr13	31035853	31043421	+	0	NA	intron (NM_001313893, intron 1 of 4)	AT_rich|Low_complexity|Low_complexity	465	NM_002128	3146	Hs.434102	NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
482	chr16	58891929	58897459	+	0	NA	Intergenic	Intergenic	-126433	NM_002080	2806	Hs.599470	NM_002080	ENSG00000125166	GOT2	KAT4|KATIV|KYAT4|mitAAT	glutamic-oxaloacetic transaminase 2	protein-coding
917	chr19	11931271	11933612	+	0	NA	intron (NM_152357, intron 1 of 3)	intron (NM_152357, intron 1 of 3)	7334	NM_152357	126070	Hs.418192	NM_152357	ENSG00000171295	ZNF440	-	zinc finger protein 440	protein-coding
380	chr5	10465420	10487112	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-1883	NR_106747	102465138		NR_106747	ENSG00000277073	MIR6131	hsa-mir-6131	microRNA 6131	ncRNA
408	chr6	107433137	107439717	+	0	NA	promoter-TSS (NM_001080450)	promoter-TSS (NM_001080450)	-791	NM_001080450	57673	Hs.418045	NM_001080450	ENSG00000178409	BEND3	KIAA1553	BEN domain containing 3	protein-coding
729	chr9	4982006	4990858	+	0	NA	intron (NM_001322194, intron 2 of 24)	intron (NM_001322194, intron 2 of 24)	1187	NM_004972	3717	Hs.656213	NM_004972	ENSG00000096968	JAK2	JTK10|THCYT3	Janus kinase 2	protein-coding
435	chr10	99115273	99116556	+	0	NA	TTS (NM_001145114)	TTS (NM_001145114)	-21456	NM_012083	23401	Hs.140720	NM_012083	ENSG00000181274	FRAT2	FRAT-2	FRAT2, WNT signaling pathway regulator	protein-coding
491	chr17	14112070	14115927	+	0	NA	Intergenic	L2a|LINE|L2	26181	NM_001007530	146822	Hs.447556	NM_001007530	ENSG00000223510	CDRT15	-	CMT1A duplicated region transcript 15	protein-coding
87	chr16	25055103	25062840	+	0	NA	Intergenic	L1M5|LINE|L1	15909	NR_038379	554206	Hs.552959	NR_038379	ENSG00000262587	LOC554206	-	leucine carboxyl methyltransferase 1 pseudogene	pseudo
911	chr9	90084018	90085652	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-27308	NM_001288731	1612	Hs.380277	NM_004938	ENSG00000196730	DAPK1	DAPK|ROCO3	death associated protein kinase 1	protein-coding
505	chr1	160077605	160079477	+	0	NA	Intergenic	Intergenic	-6979	NM_000702	477	Hs.34114	NM_000702	ENSG00000018625	ATP1A2	FHM2|MHP2	ATPase Na+/K+ transporting subunit alpha 2	protein-coding
114	chr8	131683642	131686241	+	0	NA	Intergenic	Intergenic	-229035	NM_001247996	50807	Hs.655552	NM_018482	ENSG00000153317	ASAP1	AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein-coding
378	chr19	49392912	49396873	+	0	NA	intron (NM_003323, intron 6 of 12)	LTR5B|LTR|ERVK	7104	NM_003323	7288	Hs.104636	NM_003323	ENSG00000104804	TULP2	CT65|TUBL2	tubby like protein 2	protein-coding
443	chr15	74751981	74758032	+	0	NA	intron (NR_038448, intron 1 of 4)	AluSx1|SINE|Alu	1400	NR_038449	440288	Hs.611046	NR_038448	ENSG00000247240	UBL7-AS1	-	UBL7 antisense RNA 1 (head to head)	ncRNA
28	chr13	50758171	50790022	+	0	NA	intron (NR_109974, intron 2 of 6)	intron (NR_109974, intron 2 of 6)	27942	NR_002183	145165	Hs.511834	NM_153290		ST13P4	FAM10A4|FAM10A4P	ST13, Hsp70 interacting protein pseudogene 4	pseudo
812	chr1	162313828	162333488	+	0	NA	intron (NM_014697, intron 6 of 9)	intron (NM_014697, intron 6 of 9)	-9115	NM_001126060	9722	Hs.731942	NM_014697	ENSG00000198929	NOS1AP	6330408P19Rik|CAPON	nitric oxide synthase 1 adaptor protein	protein-coding
455	chr15	65062930	65068274	+	0	NA	intron (NR_138350, intron 1 of 7)	intron (NR_138350, intron 1 of 7)	1340	NR_138363	348093	Hs.436518	NM_194272	ENSG00000166831	RBPMS2	-	RNA binding protein, mRNA processing factor 2	protein-coding
281	chr9	141053343	141055179	+	0	NA	intron (NR_027156, intron 1 of 4)	(TTAGGG)n|Simple_repeat|Simple_repeat	9696	NR_027156	643224	Hs.551805	NR_027156		TUBBP5	-	tubulin beta pseudogene 5	pseudo
528	chr22	29659406	29667850	+	0	NA	promoter-TSS (NM_013986)	promoter-TSS (NM_013986)	356	NM_012265	25807	Hs.106730	NM_012265	ENSG00000100263	RHBDD3	C22orf3|HS984G1A|PTAG	rhomboid domain containing 3	protein-coding
519	chr8	41906366	41912480	+	0	NA	non-coding (NR_136589, exon 1 of 2)	non-coding (NR_136589, exon 1 of 2)	121	NM_006766	7994	Hs.491577	NM_006766	ENSG00000083168	KAT6A	MOZ|MRD32|MYST-3|MYST3|RUNXBP2|ZC2HC6A|ZNF220	lysine acetyltransferase 6A	protein-coding
980	chr6	5257965	5264430	+	0	NA	promoter-TSS (NM_001318783)	promoter-TSS (NM_001318783)	-14	NR_104418	57128	Hs.387755	NM_020408	ENSG00000214113	LYRM4	C6orf149|CGI-203|COXPD19|ISD11	LYR motif containing 4	protein-coding
128	chr7	134130815	134135800	+	0	NA	intron (NM_001346142, intron 5 of 9)	intron (NM_001346142, intron 5 of 9)	10637	NM_001628	231	Hs.521212	NM_001628	ENSG00000085662	AKR1B1	ADR|ALDR1|ALR2|AR	aldo-keto reductase family 1 member B	protein-coding
492	chr1	227542538	227547726	+	0	NA	Intergenic	LTR16A|LTR|ERVL	-39306	NM_014826	8476	Hs.35433	NM_003607	ENSG00000143776	CDC42BPA	MRCK|MRCKA|PK428	CDC42 binding protein kinase alpha	protein-coding
782	chr6	157879306	157887162	+	0	NA	intron (NM_153746, intron 1 of 8)	X7A_LINE|LINE|CR1	-66930	NR_037463	100500899		NR_037463	ENSG00000266617	MIR3692	-	microRNA 3692	ncRNA
586	chr12	124984820	125014808	+	0	NA	intron (NM_001077261, intron 2 of 47)	AluSx|SINE|Alu	52196	NM_006312	9612	Hs.137510	NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
349	chr16	4473078	4479255	+	0	NA	intron (NM_001286516, intron 1 of 8)	CpG	360	NM_001135110	9093	Hs.459779	NM_005147	ENSG00000103423	DNAJA3	HCA57|TID1|hTID-1	DnaJ heat shock protein family (Hsp40) member A3	protein-coding
86	chr10	72376639	72380532	+	0	NA	Intergenic	MIR|SINE|MIR	-16041	NM_001083116	5551	Hs.2200	NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
367	chr1	228294261	228299689	+	0	NA	promoter-TSS (NM_001321284)	promoter-TSS (NM_001321284)	38	NM_001321284	128308	Hs.63236	NM_181441	ENSG00000162910	MRPL55	AAVG5835|L55nt|MRP-L55|PRO19675	mitochondrial ribosomal protein L55	protein-coding
769	chr8	144770206	144772225	+	0	NA	5' UTR (NM_001288805, exon 4 of 8)	5' UTR (NM_001288805, exon 4 of 8)	4593	NR_110190	286075	Hs.521922	NM_173831	ENSG00000181135	ZNF707	-	zinc finger protein 707	protein-coding
23	chr3	138402147	138410037	+	0	NA	intron (NM_001256045, intron 5 of 12)	intron (NM_001256045, intron 5 of 12)	20371	NM_001256045	5291	Hs.239818	NM_006219	ENSG00000051382	PIK3CB	P110BETA|PI3K|PI3KBETA|PIK3C1	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding
315	chr15	89657777	89661727	+	0	NA	exon (NM_152924, exon 3 of 11)	exon (NM_152924, exon 3 of 11)	28371	NM_007011	11057	Hs.122337	NM_007011	ENSG00000140526	ABHD2	HS1-2|LABH2|PHPS1-2	abhydrolase domain containing 2	protein-coding
132	chr9	96559174	96582616	+	0	NA	Intergenic	Intergenic	-10744	NR_036254	100422927		NR_036254	ENSG00000265347	MIR4291	-	microRNA 4291	ncRNA
537	chr20	49283444	49286644	+	0	NA	intron (NM_001290268, intron 1 of 21)	intron (NM_001290268, intron 1 of 21)	23023	NR_110890	140876	Hs.372578	NM_080829	ENSG00000042062	RIPOR3	C20orf175|C20orf176|FAM65C	RIPOR family member 3	protein-coding
514	chr2	172961668	172968982	+	0	NA	exon (NM_004405, exon 3 of 3)	exon (NM_004405, exon 3 of 3)	2153	NM_004405	1746	Hs.419	NM_004405	ENSG00000115844	DLX2	TES-1|TES1	distal-less homeobox 2	protein-coding
237	chr6	15104701	15110358	+	0	NA	Intergenic	Intergenic	-138677	NM_004973	3720	Hs.269059	NM_004973	ENSG00000008083	JARID2	JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
630	chr1	168145882	168151074	+	0	NA	intron (NM_001031800, intron 1 of 4)	CpG	395	NM_152902	261726	Hs.209431	NM_152902	ENSG00000143155	TIPRL	TIP|TIP41|TIPRL1	TOR signaling pathway regulator	protein-coding
955	chr8	131053354	131060711	+	0	NA	Intergenic	MER63A|DNA|hAT-Blackjack	-27657	NM_001353245	51571	Hs.126941	NM_016623	ENSG00000153310	FAM49B	BM-009|L1	family with sequence similarity 49 member B	protein-coding
970	chr4	40177094	40179350	+	0	NA	Intergenic	Intergenic	-14409	NM_001278368	399	Hs.654594	NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
625	chr9	14990811	14996782	+	0	NA	intron (NR_003920, intron 1 of 4)	intron (NR_003920, intron 1 of 4)	471	NR_003920	389705	Hs.431257	NR_003920		LOC389705	-	histone PARylation factor 1 pseudogene	pseudo
357	chr12	124194531	124207286	+	0	NA	intron (NM_012463, intron 1 of 19)	AluSz|SINE|Alu	4043	NM_012463	23545	Hs.25786	NM_012463	ENSG00000185344	ATP6V0A2	A2|ARCL|ARCL2A|ATP6A2|ATP6N1D|J6B7|RTF|STV1|TJ6|TJ6M|TJ6S|VPH1|WSS	ATPase H+ transporting V0 subunit a2	protein-coding
820	chr15	40839987	40869542	+	0	NA	intron (NM_001080792, intron 2 of 3)	AluSq|SINE|Alu	2492	NM_001080792	90416	Hs.654661	NM_052849	ENSG00000128891	CCDC32	C15orf57	coiled-coil domain containing 32	protein-coding
121	chr1	110197359	110199985	+	0	NA	promoter-TSS (NR_024538)	promoter-TSS (NR_024538)	-26	NM_147148	2948	Hs.348387	NM_000850	ENSG00000168765	GSTM4	GSTM4-4|GTM4	glutathione S-transferase mu 4	protein-coding
181	chr5	179940924	179947071	+	0	NA	intron (NM_001303241, intron 3 of 13)	intron (NM_001303241, intron 3 of 13)	22598	NM_001303241	57472	Hs.608380	NM_015455	ENSG00000113300	CNOT6	CCR4|Ccr4a	CCR4-NOT transcription complex subunit 6	protein-coding
952	chr12	123590134	123593408	+	0	NA	intron (NM_001300801, intron 1 of 24)	intron (NM_001300801, intron 1 of 24)	3204	NM_020845	57605	Hs.272759	NM_020845	ENSG00000090975	PITPNM2	NIR-3|NIR3|RDGB2|RDGBA2	phosphatidylinositol transfer protein membrane associated 2	protein-coding
732	chr22	48059056	48060666	+	0	NA	intron (NR_122046, intron 2 of 8)	intron (NR_122046, intron 2 of 8)	32438	NR_122046	284930	Hs.407567	NR_122046	ENSG00000224271	LOC284930	-	uncharacterized LOC284930	ncRNA
129	chr17	38536169	38538161	+	0	NA	Intergenic	Intergenic	-16220	NM_152219	125111	Hs.444663	NM_152219	ENSG00000183153	GJD3	CX31.9|Cx30.2|GJA11|GJC1	gap junction protein delta 3	protein-coding
589	chr19	18387988	18397108	+	0	NA	promoter-TSS (NM_001286968)	promoter-TSS (NM_001286968)	-82	NM_001286968	3727	Hs.2780	NM_005354	ENSG00000130522	JUND	AP-1	JunD proto-oncogene, AP-1 transcription factor subunit	protein-coding
483	chr3	50572956	50580417	+	0	NA	Intergenic	Intergenic	28537	NM_001171743	51161	Hs.517860	NM_016210	ENSG00000088543	C3orf18	G20	chromosome 3 open reading frame 18	protein-coding
330	chr17	42291256	42300170	+	0	NA	intron (NR_045058, intron 1 of 20)	intron (NR_045058, intron 1 of 20)	1328	NM_014233	7343	Hs.89781	NM_014233	ENSG00000108312	UBTF	CONDBA|NOR-90|UBF|UBF-1|UBF1|UBF2	upstream binding transcription factor	protein-coding
117	chr6	68733988	68740603	+	0	NA	Intergenic	Intergenic	-27948	NR_125869	102723883	Hs.566528	NR_125869	ENSG00000223504	LOC102723883	-	uncharacterized LOC102723883	ncRNA
135	chr5	66012853	66015592	+	0	NA	intron (NM_198828, intron 1 of 5)	intron (NM_198828, intron 1 of 5)	-110382	NM_015183	375449	Hs.595458	NM_015183	ENSG00000069020	MAST4	-	microtubule associated serine/threonine kinase family member 4	protein-coding
471	chr20	58513283	58519283	+	0	NA	promoter-TSS (NM_006242)	promoter-TSS (NM_006242)	839	NM_001190827	63939	Hs.54973	NM_022106	ENSG00000196227	FAM217B	C20orf177|dJ551D2.5	family with sequence similarity 217 member B	protein-coding
989	chr15	65865722	65867588	+	0	NA	intron (NM_016395, intron 10 of 10)	MLT1F|LTR|ERVL-MaLR	36831	NR_045106	81556	Hs.6686	NM_030800	ENSG00000138614	INTS14	C15orf44|VWA9	integrator complex subunit 14	protein-coding
932	chr17	16282810	16287250	+	0	NA	intron (NM_001281717, intron 1 of 1)	intron (NM_001281717, intron 1 of 1)	251	NM_001281717	7314	Hs.356190	NM_018955	ENSG00000170315	UBB	HEL-S-50	ubiquitin B	protein-coding
507	chr21	34849019	34854531	+	0	NA	intron (NR_040016, intron 1 of 8)	CpG	541	NM_006134	757	Hs.433668	NM_006134	ENSG00000142188	TMEM50B	C21orf4|HCVP7TP3	transmembrane protein 50B	protein-coding
270	chr19	6527739	6533987	+	0	NA	promoter-TSS (NM_003811)	promoter-TSS (NM_003811)	-147	NM_003811	8744	Hs.1524	NM_003811	ENSG00000125657	TNFSF9	4-1BB-L|CD137L|TNLG5A	TNF superfamily member 9	protein-coding
474	chr16	50365768	50371234	+	0	NA	intron (NM_013263, intron 7 of 16)	intron (NM_013263, intron 7 of 16)	34344	NM_013263	29117	Hs.437894	NM_013263	ENSG00000166164	BRD7	BP75|CELTIX1|NAG4	bromodomain containing 7	protein-coding
545	chr17	31288367	31290066	+	0	NA	Intergenic	Intergenic	-29666	NM_173847	124912	Hs.434112	NM_173847	ENSG00000141316	SPACA3	ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1	sperm acrosome associated 3	protein-coding
893	chr1	27716693	27722416	+	0	NA	intron (NM_005281, intron 1 of 1)	intron (NM_005281, intron 1 of 1)	406	NM_005281	2827	Hs.66542	NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
422	chr9	130316059	130320063	+	0	NA	intron (NM_001035534, intron 1 of 13)	intron (NM_001035534, intron 1 of 13)	13335	NM_022833	64855	Hs.522401	NM_022833	ENSG00000136830	FAM129B	C9orf88|MEG-3|MINERVA|OC58|bA356B19.6	family with sequence similarity 129 member B	protein-coding
362	chr3	128956713	128959868	+	0	NA	Intergenic	AluJo|SINE|Alu	-10163	NM_016128	22820	Hs.518250	NM_016128	ENSG00000181789	COPG1	COPG	coatomer protein complex subunit gamma 1	protein-coding
532	chr17	74719761	74725550	+	0	NA	promoter-TSS (NM_001080510)	promoter-TSS (NM_001080510)	226	NM_001081461	23210	Hs.514505	NM_015167	ENSG00000070495	JMJD6	PSR|PTDSR|PTDSR1	arginine demethylase and lysine hydroxylase	protein-coding
265	chr2	112399721	112402142	+	0	NA	Intergenic	Intergenic	127780	NR_039928	100616370		NR_039928	ENSG00000264793	MIR4771-1	-	microRNA 4771-1	ncRNA
974	chr10	27790385	27796742	+	0	NA	intron (NM_001256415, intron 1 of 5)	CpG	460	NM_001256412	22931	Hs.406799	NM_021252	ENSG00000099246	RAB18	RAB18LI1|WARBM3	RAB18, member RAS oncogene family	protein-coding
94	chr3	196942272	196944217	+	0	NA	intron (NM_001098424, intron 4 of 25)	MER68|LTR|ERVL	-32242	NM_001204388	1739	Hs.292549	NM_004087	ENSG00000075711	DLG1	DLGH1|SAP-97|SAP97|dJ1061C18.1.1|hdlg	discs large MAGUK scaffold protein 1	protein-coding
414	chr4	184246374	184283408	+	0	NA	Intergenic	AluSx|SINE|Alu	-21312	NM_001185149	100132463	Hs.727475	NM_001185149	ENSG00000185758	CLDN24	CLDN21	claudin 24	protein-coding
998	chr9	95084877	95091705	+	0	NA	promoter-TSS (NM_017948)	promoter-TSS (NM_017948)	-415	NM_017948	55035	Hs.442199	NM_017948	ENSG00000198000	NOL8	C9orf34|NOP132|bA62C3.3|bA62C3.4	nucleolar protein 8	protein-coding
885	chr2	122659222	122661637	+	0	NA	Intergenic	Intergenic	147308	NR_048558	7247	Hs.75066	NM_004622	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
165	chr12	120752979	120757671	+	0	NA	Intergenic	Intergenic	10267	NM_000928	5319	Hs.992	NM_000928	ENSG00000170890	PLA2G1B	PLA2|PLA2A|PPLA2	phospholipase A2 group IB	protein-coding
614	chr1	246268703	246281249	+	0	NA	intron (NM_022743, intron 5 of 11)	intron (NM_022743, intron 5 of 11)	305738	NM_022743	64754	Hs.567571	NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
564	chr17	74595014	74600511	+	0	NA	Intergenic	AluY|SINE|Alu	-15617	NM_006456	10610	Hs.592105	NM_006456	ENSG00000070731	ST6GALNAC2	SAITL1|SIAT7|SIAT7B|SIATL1|ST6GalNAII|STHM	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	protein-coding
541	chr6	28902053	28934903	+	0	NA	Intergenic	AluSc|SINE|Alu	6917	NR_103538	729583	Hs.453549	NR_103538		LINC01556	C6orf100|dJ25J6.5	long intergenic non-protein coding RNA 1556	ncRNA
894	chr7	129689802	129692252	+	0	NA	intron (NM_001282190, intron 1 of 10)	CpG	264	NM_016478	51530	Hs.194157	NM_016478	ENSG00000091732	ZC3HC1	HSPC216|NIPA	zinc finger C3HC-type containing 1	protein-coding
560	chr15	43210768	43214349	+	0	NA	intron (NM_173500, intron 1 of 14)	CpG	449	NM_173500	146057	Hs.646511	NM_173500	ENSG00000128881	TTBK2	SCA11|TTBK	tau tubulin kinase 2	protein-coding
500	chr11	3897877	3901243	+	0	NA	intron (NM_003156, intron 1 of 11)	MIRb|SINE|MIR	22268	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
309	chr22	19892103	19898673	+	0	NA	intron (NM_001282512, intron 8 of 11)	CpG	24688	NM_001352301	10587	Hs.443430	NM_006440	ENSG00000184470	TXNRD2	GCCD5|SELZ|TR|TR-BETA|TR3|TRXR2	thioredoxin reductase 2	protein-coding
849	chr19	50177708	50183709	+	0	NA	intron (NM_001207042, intron 1 of 7)	CpG	299	NR_033397	3276	Hs.20521	NM_001536	ENSG00000126457	PRMT1	ANM1|HCP1|HRMT1L2|IR1B4	protein arginine methyltransferase 1	protein-coding
571	chr12	68039962	68045736	+	0	NA	5' UTR (NM_003583, exon 1 of 2)	5' UTR (NM_003583, exon 1 of 2)	337	NM_006482	8445	Hs.173135	NM_003583	ENSG00000127334	DYRK2	-	dual specificity tyrosine phosphorylation regulated kinase 2	protein-coding
56	chr15	65713373	65715823	+	0	NA	intron (NM_020962, intron 1 of 19)	intron (NM_020962, intron 1 of 19)	812	NM_020962	57722	Hs.458607	NM_020962	ENSG00000103742	IGDCC4	DDM36|NOPE	immunoglobulin superfamily DCC subclass member 4	protein-coding
861	chr20	61058585	61065138	+	0	NA	Intergenic	Intergenic	-10835	NM_080473	140628	Hs.352250	NM_080473	ENSG00000130700	GATA5	CHTD5|GATAS|bB379O24.1	GATA binding protein 5	protein-coding
72	chr7	6309065	6313286	+	0	NA	intron (NM_004227, intron 1 of 12)	intron (NM_004227, intron 1 of 12)	1067	NM_004227	9265	Hs.487479	NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
364	chr14	101109594	101112757	+	0	NA	Intergenic	L2a|LINE|L2	-12430	NR_024096	283601	Hs.379802	NM_001007560	ENSG00000196273	LINC00523	C14orf70	long intergenic non-protein coding RNA 523	ncRNA
821	chr7	2609083	2617977	+	0	NA	intron (NM_001287499, intron 6 of 20)	MIRc|SINE|MIR	14924	NM_152558	23288	Hs.520627	NM_152558	ENSG00000106012	IQCE	1700028P05Rik|PAPA7	IQ motif containing E	protein-coding
430	chr17	42461062	42474022	+	0	NA	promoter-TSS (NM_000419)	promoter-TSS (NM_000419)	-573	NM_000419	3674	Hs.411312	NM_000419	ENSG00000005961	ITGA2B	BDPLT16|BDPLT2|CD41|CD41B|GP2B|GPIIb|GT|GTA|HPA3|PPP1R93	integrin subunit alpha 2b	protein-coding
85	chr5	172320551	172336593	+	0	NA	intron (NM_001031711, intron 3 of 9)	intron (NM_001031711, intron 3 of 9)	-57160	NM_001317981	51121	Hs.546390	NM_016093	ENSG00000037241	RPL26L1	RPL26P1	ribosomal protein L26 like 1	protein-coding
905	chr1	16374310	16385209	+	0	NA	intron (NM_000085, intron 15 of 19)	AluSz|SINE|Alu	4502	NM_001165945	1188	Hs.352243	NM_000085	ENSG00000184908	CLCNKB	CLCKB|ClC-K2|ClC-Kb	chloride voltage-gated channel Kb	protein-coding
810	chr1	45185820	45189680	+	0	NA	intron (NM_001145636, intron 6 of 11)	intron (NM_001145636, intron 6 of 11)	-17740	NM_006845	11004	Hs.720061	NM_006845	ENSG00000142945	KIF2C	CT139|KNSL6|MCAK	kinesin family member 2C	protein-coding
525	chr2	197391564	197393949	+	0	NA	intron (NM_001348768, intron 1 of 28)	intron (NM_001348768, intron 1 of 28)	64652	NM_020760	57520	Hs.633212	NM_020760	ENSG00000138411	HECW2	NDHSAL|NEDL2	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	protein-coding
312	chr10	126841180	126852051	+	0	NA	intron (NM_001290214, intron 1 of 10)	intron (NM_001290214, intron 1 of 10)	1072	NM_001321013	1488	Hs.501345	NM_001329	ENSG00000175029	CTBP2	-	C-terminal binding protein 2	protein-coding
73	chr3	16303120	16310586	+	0	NA	promoter-TSS (NM_206831)	promoter-TSS (NM_206831)	268	NM_001330671	92106	Hs.655449	NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
134	chr1	157333907	157341149	+	0	NA	Intergenic	Intergenic	184782	NM_001195388	83416	Hs.415950	NM_031281	ENSG00000143297	FCRL5	BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820	Fc receptor like 5	protein-coding
289	chr11	46561445	46565574	+	0	NA	exon (NM_001300731, exon 7 of 17)	exon (NM_001300731, exon 7 of 17)	49405	NM_017749	55626	Hs.654644	NM_017749	ENSG00000110497	AMBRA1	DCAF3|WDR94	autophagy and beclin 1 regulator 1	protein-coding
49	chr19	47758115	47763223	+	0	NA	intron (NM_015603, intron 1 of 11)	CpG	938	NM_015603	26093	Hs.227782	NM_015603	ENSG00000105321	CCDC9	-	coiled-coil domain containing 9	protein-coding
400	chr6	159183244	159186016	+	0	NA	intron (NM_001009991, intron 16 of 16)	intron (NM_001009991, intron 16 of 16)	1155	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
353	chr1	33462195	33464369	+	0	NA	Intergenic	MIRb|SINE|MIR	-32868	NM_001127361	127544	Hs.591504	NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
688	chr6	13870864	13875884	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-51303	NM_001165034	221687	Hs.111164	NM_152737	ENSG00000180537	RNF182	-	ring finger protein 182	protein-coding
119	chr12	52277087	52280868	+	0	NA	Intergenic	Intergenic	-2816	NM_001304460	341405	Hs.433492	NM_182608	ENSG00000167612	ANKRD33	C12orf7|PANKY	ankyrin repeat domain 33	protein-coding
164	chr1	29207076	29220962	+	0	NA	intron (NM_001166007, intron 1 of 17)	CpG	416	NM_001166007	2035	Hs.175437	NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
907	chr6	33236290	33250763	+	0	NA	intron (NM_022551, intron 2 of 5).3	intron (NM_022551, intron 2 of 5).3	-1391	NM_003782	8705	Hs.534375	NM_003782	ENSG00000235863	B3GALT4	BETA3GALT4|GALT2|GALT4	beta-1,3-galactosyltransferase 4	protein-coding
211	chr6	43680999	43687440	+	0	NA	Intergenic	Intergenic	-28670	NM_001193343	55168	Hs.520149	NM_018135	ENSG00000096080	MRPS18A	HumanS18b|MRP-S18-3|MRPS18-3|S18bmt	mitochondrial ribosomal protein S18A	protein-coding
648	chr11	47597936	47603619	+	0	NA	promoter-TSS (NM_001318720)	promoter-TSS (NM_001318720)	-210	NM_001318719	55709	Hs.718483	NM_016506	ENSG00000123444	KBTBD4	BKLHD4|HSPC252	kelch repeat and BTB domain containing 4	protein-coding
20	chr5	139989893	139992924	+	0	NA	Intergenic	Intergenic	21627	NM_000591	929	Hs.163867	NM_000591	ENSG00000170458	CD14	-	CD14 molecule	protein-coding
543	chr9	136236224	136245321	+	0	NA	intron (NM_001280791, intron 1 of 5)	AluSq2|SINE|Alu	2265	NM_001280791	6836	Hs.512465	NM_033161	ENSG00000148248	SURF4	ERV29	surfeit 4	protein-coding
52	chr9	34629137	34659781	+	0	NA	Intergenic	MER41A|LTR|ERV1	-2127	NM_001258332	2592	Hs.522090	NM_000155	ENSG00000213930	GALT	-	galactose-1-phosphate uridylyltransferase	protein-coding
290	chr19	30431988	30438684	+	0	NA	intron (NR_045557, intron 1 of 9)	intron (NR_045557, intron 1 of 9)	2190	NM_003796	8725	Hs.466391	NM_003796	ENSG00000105176	URI1	C19orf2|NNX3|PPP1R19|RMP|URI	URI1, prefoldin like chaperone	protein-coding
777	chr5	173140995	173142164	+	0	NA	intron (NR_108027, intron 1 of 2)	LTR88c|LTR|Gypsy?	25117	NR_146727	105377736	Hs.582570	NR_146727	ENSG00000253428	LINC01942	-	long intergenic non-protein coding RNA 1942	ncRNA
41	chr5	89879730	89886984	+	0	NA	intron (NR_003149, intron 1 of 89)	intron (NR_003149, intron 1 of 89)	28740	NM_032119	84059	Hs.591777	NM_032119	ENSG00000164199	ADGRV1	FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b	adhesion G protein-coupled receptor V1	protein-coding
311	chr16	24547064	24556102	+	0	NA	5' UTR (NM_006910, exon 1 of 18)	5' UTR (NM_006910, exon 1 of 18)	675	NM_006910	5930	Hs.188553	NM_006910	ENSG00000122257	RBBP6	MY038|P2P-R|PACT|RBQ-1|SNAMA	RB binding protein 6, ubiquitin ligase	protein-coding
816	chr1	228638930	228648737	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	1727	NM_033445	92815	Hs.26331	NM_033445	ENSG00000181218	HIST3H2A	-	histone cluster 3 H2A	protein-coding
225	chr19	4789928	4794386	+	0	NA	exon (NM_018708, exon 1 of 1)	exon (NM_018708, exon 1 of 1)	429	NM_018708	55527	Hs.515082	NM_018708	ENSG00000141965	FEM1A	EPRAP	fem-1 homolog A	protein-coding
55	chr16	14495674	14497730	+	0	NA	Intergenic	MIRb|SINE|MIR	-32579	NR_131191	105447648	Hs.554151	NR_131191	ENSG00000260009	LINC02130	-	long intergenic non-protein coding RNA 2130	ncRNA
264	chr15	76048164	76053603	+	0	NA	Intergenic	Intergenic	3773	NR_036198	100423035		NR_036198	ENSG00000284385	MIR4313	-	microRNA 4313	ncRNA
449	chr7	129070126	129082016	+	0	NA	intron (NM_001134336, intron 1 of 19)	L2a|LINE|L2	1797	NM_020704	57464	Hs.489988	NM_020704	ENSG00000128578	STRIP2	FAM40B|FAR11B	striatin interacting protein 2	protein-coding
453	chr16	30769940	30776798	+	0	NA	promoter-TSS (NM_001286572)	promoter-TSS (NM_001286572)	196	NM_001014979	90835	Hs.724010	NM_001014979	ENSG00000196118	CCDC189	C16orf93	coiled-coil domain containing 189	protein-coding
92	chr11	65396841	65413373	+	0	NA	promoter-TSS (NM_006747)	promoter-TSS (NM_006747)	-471	NM_006747	6494	Hs.530477	NM_006747	ENSG00000213445	SIPA1	SPA1	signal-induced proliferation-associated 1	protein-coding
144	chr20	2847429	2857466	+	0	NA	intron (NM_002836, intron 5 of 27)	intron (NM_002836, intron 5 of 27)	-1695	NM_080840	5786	Hs.269577	NM_002836	ENSG00000132670	PTPRA	HEPTP|HLPR|HPTPA|HPTPalpha|LRP|PTPA|PTPRL2|R-PTP-alpha|RPTPA	protein tyrosine phosphatase, receptor type A	protein-coding
799	chr12	110886282	110889764	+	0	NA	intron (NM_001287222, intron 1 of 6)	CpG	193	NM_001287222	10094	Hs.524741	NM_001278556	ENSG00000111229	ARPC3	ARC21|p21-Arc	actin related protein 2/3 complex subunit 3	protein-coding
960	chr19	18940702	18946213	+	0	NA	intron (NM_002911, intron 1 of 23)	(GCCTG)n|Simple_repeat|Simple_repeat	713	NM_002911	5976	Hs.515266	NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|pNORF1|smg-2	UPF1, RNA helicase and ATPase	protein-coding
417	chr19	58889991	58901239	+	0	NA	Intergenic	Intergenic	2610	NR_039910	100616168		NR_039910	ENSG00000266640	MIR4754	mir-4754	microRNA 4754	ncRNA
910	chr11	93715064	93718517	+	0	NA	Intergenic	Intergenic	-37588	NM_001098672	341208	Hs.669645	NM_001098672	ENSG00000181333	HEPHL1	-	hephaestin like 1	protein-coding
446	chr7	132760348	132769119	+	0	NA	intron (NM_017812, intron 1 of 7)	MIR3|SINE|MIR	2185	NM_017812	54927	Hs.655010	NM_017812	ENSG00000106554	CHCHD3	MINOS3|Mic19|PPP1R22	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding
8	chr3	138482904	138484460	+	0	NA	Intergenic	L2c|LINE|L2	-5481	NM_006219	5291	Hs.239818	NM_006219	ENSG00000051382	PIK3CB	P110BETA|PI3K|PI3KBETA|PIK3C1	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding
650	chr14	23653835	23656816	+	0	NA	Intergenic	AluJb|SINE|Alu	-2456	NM_012244	23428	Hs.596643	NM_012244	ENSG00000092068	SLC7A8	LAT2|LPI-PC1	solute carrier family 7 member 8	protein-coding
36	chr17	40537716	40542720	+	0	NA	intron (NM_213662, intron 1 of 23)	CpG	187	NM_213662	6774	Hs.463059	NM_003150	ENSG00000168610	STAT3	ADMIO|ADMIO1|APRF|HIES	signal transducer and activator of transcription 3	protein-coding
889	chr17	38631296	38633065	+	0	NA	TTS (NM_032865)	TTS (NM_032865)	25674	NM_032865	84951	Hs.438292	NM_032865	ENSG00000131746	TNS4	CTEN|PP14434	tensin 4	protein-coding
832	chr3	127302107	127324253	+	0	NA	intron (NM_001353007, intron 2 of 10)	HERV16-int|LTR|ERVL	-3562	NM_001353006	131601	Hs.6418	NM_016372	ENSG00000163870	TPRA1	GPR175|TMEM227|TPRA40	transmembrane protein adipocyte associated 1	protein-coding
984	chr13	34386216	34408130	+	0	NA	intron (NM_002915, intron 2 of 8)	L1M5|LINE|L1	4967	NM_181558	5983	Hs.115474	NM_002915	ENSG00000133119	RFC3	RFC38	replication factor C subunit 3	protein-coding
811	chr17	74325384	74326720	+	0	NA	intron (NM_001330503, intron 5 of 8)	intron (NM_001330503, intron 5 of 8)	-22291	NR_130649	84074	Hs.252739	NM_032134	ENSG00000129646	QRICH2	-	glutamine rich 2	protein-coding
572	chr11	20406926	20412301	+	0	NA	exon (NM_005788, exon 2 of 16)	exon (NM_005788, exon 2 of 16)	537	NM_005788	10196	Hs.152337	NM_005788	ENSG00000185238	PRMT3	HRMT1L3	protein arginine methyltransferase 3	protein-coding
744	chr22	50199228	50204308	+	0	NA	intron (NR_146334, intron 1 of 12)	L1MB3|LINE|L1	16211	NM_001349940	23774	Hs.127950	NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
405	chr5	176871853	176874861	+	0	NA	promoter-TSS (NM_001174101)	promoter-TSS (NM_001174101)	-439	NM_001174101	80758	Hs.534492	NM_030567	ENSG00000131188	PRR7	-	proline rich 7, synaptic	protein-coding
302	chr7	73200337	73202747	+	0	NA	Intergenic	AluSx|SINE|Alu	-16942	NM_001306	1365	Hs.647023	NM_001306	ENSG00000165215	CLDN3	C7orf1|CPE-R2|CPETR2|HRVP1|RVP1	claudin 3	protein-coding
872	chr21	44374269	44377098	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-4559	NR_049889	100847013		NR_049889	ENSG00000264580	MIR5692B	-	microRNA 5692b	ncRNA
332	chr19	50177708	50183709	+	0	NA	intron (NM_001207042, intron 1 of 7)	CpG	299	NR_033397	3276	Hs.20521	NM_001536	ENSG00000126457	PRMT1	ANM1|HCP1|HRMT1L2|IR1B4	protein arginine methyltransferase 1	protein-coding
794	chr6	15792209	15795818	+	0	NA	Intergenic	Intergenic	-130724	NR_036448	84062	Hs.571148	NM_032122	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
459	chr17	42236077	42240218	+	0	NA	intron (NM_001171251, intron 9 of 9)	intron (NM_001171251, intron 9 of 9)	-9927	NM_080863	92591	Hs.534517	NM_080863	ENSG00000161664	ASB16	-	ankyrin repeat and SOCS box containing 16	protein-coding
761	chrX	49599813	49619589	+	0	NA	Intergenic	MIRb|SINE|MIR	15795	NM_007003	9506	Hs.441038	NM_007003	ENSG00000101951	PAGE4	CT16.7|GAGE-9|GAGEC1|JM-27|JM27|PAGE-1|PAGE-4	PAGE family member 4	protein-coding
206	chr2	38890858	38895846	+	0	NA	exon (NM_138801, exon 1 of 7)	exon (NM_138801, exon 1 of 7)	300	NM_138801	130589	Hs.435012	NM_138801	ENSG00000143891	GALM	BLOCK25|GLAT|HEL-S-63p|IBD1	galactose mutarotase	protein-coding
859	chr5	78842119	78844584	+	0	NA	Intergenic	Intergenic	-33692	NM_004272	9456	Hs.591761	NM_004272	ENSG00000152413	HOMER1	HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1	homer scaffold protein 1	protein-coding
638	chr15	66216749	66220007	+	0	NA	intron (NM_032445, intron 13 of 22)	L2b|LINE|L2	56581	NM_001206836	8766	Hs.321541	NM_004663	ENSG00000103769	RAB11A	YL8	RAB11A, member RAS oncogene family	protein-coding
306	chr1	16967966	16974232	+	0	NA	promoter-TSS (NR_027504)	promoter-TSS (NR_027504)	-970	NR_027504	11209	Hs.349110	NR_027504		MST1P2	MSPL-1|MSPL-2|MSPL-3|MSPL1|MSPL2|MSPL3|MSTP1|MSTP2|MSTP3	macrophage stimulating 1 pseudogene 2	pseudo
394	chr12	125199197	125201125	+	0	NA	Intergenic	Intergenic	-148151	NM_001077261	9612	Hs.137510	NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
284	chr15	64262905	64265206	+	0	NA	intron (NM_014326, intron 3 of 11)	intron (NM_014326, intron 3 of 11)	43582	NR_120344	101928988	Hs.673214	NR_120344	ENSG00000259351	LOC101928988	-	uncharacterized LOC101928988	ncRNA
548	chr6	35001991	35004058	+	0	NA	intron (NM_015245, intron 11 of 23)	L2a|LINE|L2	106163	NM_001261819	6954	Hs.435371	NM_018679	ENSG00000124678	TCP11	D6S230E|FPPR	t-complex 11	protein-coding
706	chr2	65452398	65463574	+	0	NA	intron (NM_001005386, intron 1 of 9)	AluSx1|SINE|Alu	3157	NM_005722	10097	Hs.643727	NM_005722	ENSG00000138071	ACTR2	ARP2	ARP2 actin related protein 2 homolog	protein-coding
255	chr4	8336771	8340055	+	0	NA	Intergenic	MER54A|LTR|ERVL	16510	NR_149125	105374374	Hs.145224	NR_149125	ENSG00000249145	LINC02517	-	long intergenic non-protein coding RNA 2517	ncRNA
561	chr5	1788290	1824680	+	0	NA	intron (NM_004553, intron 2 of 3)	intron (NM_004553, intron 2 of 3)	4989	NM_004553	4726	Hs.408257	NM_004553	ENSG00000145494	NDUFS6	CI-13kA|CI-13kD-A|CI13KDA	NADH:ubiquinone oxidoreductase subunit S6	protein-coding
185	chr4	83732980	83734987	+	0	NA	Intergenic	AluSx3|SINE|Alu	-13973	NM_024906	79966	Hs.379191	NM_024906	ENSG00000145284	SCD5	ACOD4|FADS4|HSCD5|SCD2|SCD4	stearoyl-CoA desaturase 5	protein-coding
968	chr14	70157234	70172922	+	0	NA	intron (NM_014734, intron 2 of 5)	intron (NM_014734, intron 2 of 5)	-68726	NM_006925	6430	Hs.632326	NM_006925	ENSG00000100650	SRSF5	HRS|SFRS5|SRP40	serine and arginine rich splicing factor 5	protein-coding
896	chr17	46645447	46664679	+	0	NA	intron (NM_024015, intron 1 of 1)	intron (NM_024015, intron 1 of 1)	680	NM_024015	3214	Hs.664706	NM_024015	ENSG00000182742	HOXB4	HOX-2.6|HOX2|HOX2F	homeobox B4	protein-coding
780	chr21	36470596	36481869	+	0	NA	Intergenic	Intergenic	-54637	NM_001754	861	Hs.149261	NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	runt related transcription factor 1	protein-coding
549	chr10	30714495	30738013	+	0	NA	5' UTR (NM_005204, exon 2 of 9)	5' UTR (NM_005204, exon 2 of 9)	2690	NM_001320961	1326	Hs.432453	NM_005204	ENSG00000107968	MAP3K8	AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
762	chr3	195613011	195614945	+	0	NA	intron (NM_001010938, intron 2 of 14)	intron (NM_001010938, intron 2 of 14)	-4712	NR_106887	102465977		NR_106887	ENSG00000276489	MIR6829	hsa-mir-6829	microRNA 6829	ncRNA
293	chr6	84694391	84696414	+	0	NA	Intergenic	Intergenic	-47976	NM_001346541	112609	Hs.370055	NM_138409	ENSG00000135324	MRAP2	C6orf117|bA51G5.2	melanocortin 2 receptor accessory protein 2	protein-coding
191	chr19	13123145	13124670	+	0	NA	intron (NM_002501, intron 1 of 9)	CpG	-10878	NM_001271044	4784	Hs.257970	NM_002501	ENSG00000008441	NFIX	CTF|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
914	chr15	45084448	45088174	+	0	NA	Intergenic	Intergenic	57751	NM_001301144	140691	Hs.745248	NM_080745	ENSG00000185880	TRIM69	HSD-34|HSD34|RNF36|Trif	tripartite motif containing 69	protein-coding
626	chr5	56362332	56366012	+	0	NA	Intergenic	Intergenic	-105603	NM_022913	65056	Hs.444279	NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
570	chr12	10890264	10893651	+	0	NA	Intergenic	Intergenic	-10876	NR_120463	101928162	Hs.112950	NR_120463	ENSG00000256888	LINC02366	-	long intergenic non-protein coding RNA 2366	ncRNA
846	chr17	27221418	27237352	+	0	NA	intron (NM_144683, intron 2 of 4)	L2b|LINE|L2	704	NM_144683	147015	Hs.631760	NM_144683	ENSG00000167536	DHRS13	SDR7C5	dehydrogenase/reductase 13	protein-coding
16	chr16	8157004	8165598	+	0	NA	Intergenic	MER41C|LTR|ERV1	426527	NM_001290098	283953	Hs.150849	NM_001146336	ENSG00000232258	TMEM114	-	transmembrane protein 114	protein-coding
463	chr1	26881624	26883505	+	0	NA	intron (NM_001006665, intron 10 of 20)	MIRc|SINE|MIR	1531	NR_031740	100302190		NR_031740	ENSG00000238705	MIR1976	hsa-mir-1976	microRNA 1976	ncRNA
866	chrX	154870294	154872547	+	0	NA	intron (NM_001304990, intron 1 of 2)	LTR30|LTR|ERV1	-28798	NM_001184797	55217	Hs.133321	NM_018196	ENSG00000185973	TMLHE	AUTSX6|BBOX2|TMLD|TMLH|TMLHED|XAP130	trimethyllysine hydroxylase, epsilon	protein-coding
96	chr1	168341027	168345251	+	0	NA	Intergenic	L1PA4|LINE|L1	-1623	NR_030284	693142		NR_030284	ENSG00000207974	MIR557	MIRN557|hsa-mir-557	microRNA 557	ncRNA
679	chr18	53182946	53185829	+	0	NA	intron (NM_001348219, intron 2 of 18)	MLT1H2|LTR|ERVL-MaLR	-6387	NM_001243231	6925	Hs.605153	NM_003199	ENSG00000196628	TCF4	E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19	transcription factor 4	protein-coding
920	chr3	53199346	53202011	+	0	NA	intron (NM_001316327, intron 2 of 18)	intron (NM_001316327, intron 2 of 18)	-2004	NM_001354676	5580	Hs.155342	NM_006254	ENSG00000163932	PRKCD	ALPS3|CVID9|MAY1|PKCD|nPKC-delta	protein kinase C delta	protein-coding
433	chr19	18270315	18272912	+	0	NA	intron (NR_073517, intron 3 of 15)	intron (NR_073517, intron 3 of 15)	7625	NM_005027	5296	Hs.371344	NM_005027	ENSG00000105647	PIK3R2	MPPH|MPPH1|P85B|p85|p85-BETA	phosphoinositide-3-kinase regulatory subunit 2	protein-coding
684	chrX	154248852	154263099	+	0	NA	intron (NM_023934, intron 1 of 4)	MER63B|DNA|hAT-Blackjack	911	NM_023934	65991	Hs.356050	NM_023934	ENSG00000165775	FUNDC2	DC44|HCBP6|HCC3|PD03104	FUN14 domain containing 2	protein-coding
22	chr17	43211936	43215318	+	0	NA	intron (NM_024722, intron 1 of 8)	intron (NM_024722, intron 1 of 8)	613	NM_024722	79777	Hs.110298	NM_024722	ENSG00000181513	ACBD4	HMFT0700	acyl-CoA binding domain containing 4	protein-coding
484	chr6	35224812	35232781	+	0	NA	intron (NM_003427, intron 1 of 13)	MIRb|SINE|MIR	1305	NM_001292032	7629	Hs.388024	NM_003427	ENSG00000065029	ZNF76	D6S229E|ZNF523|Zfp523	zinc finger protein 76	protein-coding
198	chrX	55052990	55060421	+	0	NA	intron (NM_001037968, intron 1 of 10)	intron (NM_001037968, intron 1 of 10)	792	NM_000032	212	Hs.522666	NM_000032	ENSG00000158578	ALAS2	ALAS-E|ALASE|ANH1|ASB|SIDBA1|XLDPP|XLEPP|XLSA	5'-aminolevulinate synthase 2	protein-coding
737	chr9	132381350	132398439	+	0	NA	intron (NM_001286799, intron 1 of 3)	MIR|SINE|MIR	1171	NM_001286799	28989	Hs.744027	NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
383	chr7	134842425	134847783	+	0	NA	intron (NM_018295, intron 1 of 1)	intron (NM_018295, intron 1 of 1)	9122	NM_001243753	78996	Hs.643113	NM_024033	ENSG00000122783	CYREN	C7orf49|MRI|MRI-2	cell cycle regulator of NHEJ	protein-coding
772	chr5	134789647	134795809	+	0	NA	Intergenic	MIRb|SINE|MIR	-4639	NM_001099221	497189	Hs.552091	NM_001099221	ENSG00000255833	TIFAB	-	TIFA inhibitor	protein-coding
13	chr1	32771997	32778759	+	0	NA	intron (NM_004964, intron 2 of 13)	FRAM|SINE|Alu	17670	NM_004964	3065	Hs.88556	NM_004964	ENSG00000116478	HDAC1	GON-10|HD1|RPD3|RPD3L1	histone deacetylase 1	protein-coding
750	chr11	66884568	66890469	+	0	NA	non-coding (NR_027473, exon 1 of 21)	non-coding (NR_027473, exon 1 of 21)	778	NM_012308	22992	Hs.124147	NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
196	chr3	52564052	52574778	+	0	NA	promoter-TSS (NM_022908)	promoter-TSS (NM_022908)	-322	NM_022908	64943	Hs.84753	NM_022908	ENSG00000168268	NT5DC2	-	5'-nucleotidase domain containing 2	protein-coding
35	chr1	19834866	19836989	+	0	NA	Intergenic	AluJb|SINE|Alu	-23792	NM_004930	832	Hs.432760	NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
351	chr1	145573341	145577431	+	0	NA	promoter-TSS (NM_006099)	promoter-TSS (NM_006099)	-602	NM_006099	10401	Hs.435761	NM_006099	ENSG00000131788	PIAS3	ZMIZ5	protein inhibitor of activated STAT 3	protein-coding
580	chr1	37977469	37985514	+	0	NA	Intergenic	L1MEg|LINE|L1	-1071	NM_022756	64769	Hs.17118	NM_022756	ENSG00000163875	MEAF6	C1orf149|CENP-28|EAF6|NY-SAR-91	MYST/Esa1 associated factor 6	protein-coding
30	chr1	113158597	113170204	+	0	NA	intron (NM_006135, intron 1 of 9)	AluSx3|SINE|Alu	2325	NM_006135	829	Hs.744974	NM_006135	ENSG00000116489	CAPZA1	CAPPA1|CAPZ|CAZ1	capping actin protein of muscle Z-line subunit alpha 1	protein-coding
666	chr21	38796482	38800068	+	0	NA	intron (NM_001347722, intron 2 of 11)	intron (NM_001347722, intron 2 of 11)	5674	NM_130438	1859	Hs.368240	NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
320	chr5	71520494	71535433	+	0	NA	intron (NM_001286748, intron 8 of 11)	intron (NM_001286748, intron 8 of 11)	52508	NM_001324255	4131	Hs.335079	NM_005909	ENSG00000131711	MAP1B	FUTSCH|MAP5|PPP1R102	microtubule associated protein 1B	protein-coding
316	chr16	29622060	29627074	+	0	NA	non-coding (NR_135317, exon 1 of 12)	non-coding (NR_135317, exon 1 of 12)	471	NR_135317	440354	Hs.552700	NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
710	chr4	39637744	39642709	+	0	NA	intron (NM_001317896, intron 1 of 5)	CpG	392	NM_174921	201895	Hs.205952	NM_174921	ENSG00000163683	SMIM14	C4orf34	small integral membrane protein 14	protein-coding
993	chr3	4666305	4702840	+	0	NA	intron (NM_001168272, intron 7 of 60)	intron (NM_001168272, intron 7 of 60)	108702	NR_004428	100126791	Hs.663059	NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript (non-protein coding)	ncRNA
724	chr21	37681431	37716488	+	0	NA	intron (NM_001320445, intron 1 of 15)	L1MB2|LINE|L1	6472	NM_015358	23515	Hs.421150	NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
788	chr19	14549745	14552730	+	0	NA	intron (NM_213560, intron 1 of 21)	intron (NM_213560, intron 1 of 21)	151	NM_213560	5585	Hs.466044	NM_002741	ENSG00000123143	PKN1	DBK|PAK-1|PAK1|PKN|PKN-ALPHA|PRK1|PRKCL1	protein kinase N1	protein-coding
588	chr1	40306110	40321754	+	0	NA	intron (NR_132412, intron 1 of 5)	intron (NR_132412, intron 1 of 5)	35251	NR_132405	54802	Hs.356554	NM_017646	ENSG00000043514	TRIT1	COXPD35|GRO1|IPPT|IPT|IPTase|MOD5|hGRO1	tRNA isopentenyltransferase 1	protein-coding
269	chr14	24699071	24704371	+	0	NA	promoter-TSS (NM_001351025)	promoter-TSS (NM_001351025)	93	NM_001351025	51292	Hs.368855	NM_016576	ENSG00000100938	GMPR2	GMPR 2	guanosine monophosphate reductase 2	protein-coding
713	chr5	142780482	142786716	+	0	NA	promoter-TSS (NM_001204258)	promoter-TSS (NM_001204258)	-345	NM_001204258	2908	Hs.122926	NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
697	chr6	16206087	16207646	+	0	NA	Intergenic	Intergenic	-31945	NM_006877	2766	Hs.484741	NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
675	chr4	97392862	97395439	+	0	NA	intron (NR_147149, intron 2 of 3)	MER39|LTR|ERV1	162296	NR_147149	105377338		NR_147149		LINC02267	-	long intergenic non-protein coding RNA 2267	ncRNA
401	chr4	48739883	48743168	+	0	NA	intron (NM_015030, intron 1 of 63)	L1MC1|LINE|L1	40791	NM_015030	285527	Hs.595553	NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding
959	chr3	151390856	151394729	+	0	NA	intron (NR_031678, intron 2 of 4)	intron (NR_031678, intron 2 of 4)	45472	NR_031678	100313773		NR_031678	ENSG00000221801	MIR548H2	MIR548H-2|MIRN548H2	microRNA 548h-2	ncRNA
473	chr11	111943364	111946934	+	0	NA	promoter-TSS (NM_001082619)	promoter-TSS (NM_001082619)	181	NM_001082969	55216	Hs.195060	NM_018195	ENSG00000150776	NKAPD1	C11orf57	NKAP domain containing 1	protein-coding
837	chr2	85640033	85652326	+	0	NA	5' UTR (NM_201594, exon 1 of 21)	5' UTR (NM_201594, exon 1 of 21)	125	NM_201594	284948	Hs.209542	NM_198482	ENSG00000152292	SH2D6	-	SH2 domain containing 6	protein-coding
963	chr17	73235463	73237905	+	0	NA	intron (NM_138619, intron 11 of 16)	intron (NM_138619, intron 11 of 16)	21058	NM_014001	23163	Hs.87726	NM_014001	ENSG00000125447	GGA3	-	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
187	chr6	44203898	44207562	+	0	NA	Intergenic	CpG	-8173	NM_001271970	3326	Hs.509736	NM_007355	ENSG00000096384	HSP90AB1	D6S182|HSP84|HSP90B|HSPC2|HSPCB	heat shock protein 90 alpha family class B member 1	protein-coding
365	chr1	28557005	28567094	+	0	NA	promoter-TSS (NM_178191)	promoter-TSS (NM_178191)	-553	NM_178191	93974	Hs.744914	NM_016311	ENSG00000130770	ATP5IF1	ATPI|ATPIF1|ATPIP|IP	ATP synthase inhibitory factor subunit 1	protein-coding
554	chr19	4574607	4578523	+	0	NA	Intergenic	L2a|LINE|L2	-16794	NM_032108	10501	Hs.465642	NM_020241	ENSG00000167680	SEMA6B	SEM-SEMA-Y|SEMA-VIB|SEMAN|semaZ	semaphorin 6B	protein-coding
234	chr7	4719826	4725349	+	0	NA	intron (NM_001037165, intron 1 of 8)	CpG	657	NM_001037165	221937	Hs.487393	NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
582	chr7	23219457	23225596	+	0	NA	intron (NM_007342, intron 1 of 6)	AluSx3|SINE|Alu	1080	NM_007342	11097	Hs.408241	NM_007342	ENSG00000136243	NUPL2	CG1|NLP-1|NLP_1|hCG1	nucleoporin like 2	protein-coding
617	chr3	195177470	195182796	+	0	NA	Intergenic	L4|LINE|RTE	-16316	NM_012287	23527	Hs.593373	NM_012287	ENSG00000114331	ACAP2	CENTB2|CNT-B2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding
938	chr1	155240213	155248627	+	0	NA	Intergenic	AluJb|SINE|Alu	-1100	NM_001294338	1196	Hs.73986	NM_001291	ENSG00000176444	CLK2	-	CDC like kinase 2	protein-coding
163	chr4	175198023	175209827	+	0	NA	promoter-TSS (NM_001040157)	promoter-TSS (NM_001040157)	-903	NM_001040157	80817	Hs.555989	NM_030633	ENSG00000164118	CEP44	KIAA1712|PS1TP3	centrosomal protein 44	protein-coding
15	chr16	80000790	80008921	+	0	NA	Intergenic	Intergenic	175709	NR_104661	101928248	Hs.659802	NR_104660	ENSG00000260876	LINC01229	-	long intergenic non-protein coding RNA 1229	ncRNA
828	chr8	106462612	106464751	+	0	NA	intron (NM_012082, intron 3 of 7)	MLT1C|LTR|ERVL-MaLR	132534	NM_012082	23414	Hs.431009	NM_012082	ENSG00000169946	ZFPM2	DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2	zinc finger protein, FOG family member 2	protein-coding
220	chr15	66901735	66904278	+	0	NA	intron (NR_110372, intron 1 of 4)	AluSz|SINE|Alu	28478	NR_110372	102723165	Hs.636703	NR_110372	ENSG00000259471	LINC01169	-	long intergenic non-protein coding RNA 1169	ncRNA
375	chr7	129401761	129415506	+	0	NA	Intergenic	Intergenic	1699	NR_029614	406958		NR_029614	ENSG00000207990	MIR182	MIRN182|miRNA182|mir-182	microRNA 182	ncRNA
260	chr1	11966156	11972727	+	0	NA	Intergenic	AluSx|SINE|Alu	17044	NM_138346	90231	Hs.520094	NM_138346	ENSG00000116685	KIAA2013	-	KIAA2013	protein-coding
37	chr8	130684695	130715388	+	0	NA	Intergenic	MIRb|SINE|MIR	-7556	NR_130917	137196	Hs.679457	NR_130917	ENSG00000229140	CCDC26	RAM	CCDC26 long non-coding RNA	ncRNA
428	chr17	6552921	6556885	+	0	NA	promoter-TSS (NM_016060)	promoter-TSS (NM_016060)	51	NM_016060	51003	Hs.567493	NM_016060	ENSG00000108590	MED31	3110004H13Rik|CGI-125|Soh1	mediator complex subunit 31	protein-coding
398	chr22	30900880	30904682	+	0	NA	Intergenic	Intergenic	-1083	NM_001161368	284904	Hs.517541	NM_174977	ENSG00000133488	SEC14L4	TAP3	SEC14 like lipid binding 4	protein-coding
27	chr16	87893488	87895631	+	0	NA	intron (NM_003486, intron 1 of 9)	CpG	8546	NM_003486	8140	Hs.513797	NM_003486	ENSG00000103257	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16	solute carrier family 7 member 5	protein-coding
942	chr1	88251757	88253299	+	0	NA	Intergenic	Intergenic	-415190	NR_038324	100505768	Hs.125247	NR_038324	ENSG00000227290	LINC01364	-	long intergenic non-protein coding RNA 1364	ncRNA
213	chr20	49572338	49577580	+	0	NA	promoter-TSS (NM_014484)	promoter-TSS (NM_014484)	142	NM_001317035	8813	Hs.654951	NM_003859	ENSG00000000419	DPM1	CDGIE|MPDS	dolichyl-phosphate mannosyltransferase subunit 1, catalytic	protein-coding
616	chr2	203877652	203885169	+	0	NA	intron (NM_001114132, intron 2 of 54)	intron (NM_001114132, intron 2 of 54)	1808	NM_001114132	65065	Hs.648846	NM_198945	ENSG00000144426	NBEAL1	A530083I02Rik|ALS2CR16|ALS2CR17	neurobeachin like 1	protein-coding
633	chr17	46296027	46299070	+	0	NA	intron (NM_001075099, intron 4 of 12)	L1ME3A|LINE|L1	-63675	NR_031607	100302211		NR_031607	ENSG00000221739	MIR1203	MIRN1203|hsa-mir-1203	microRNA 1203	ncRNA
236	chr11	57527851	57533355	+	0	NA	intron (NM_001085467, intron 1 of 16)	intron (NM_001085467, intron 1 of 16)	1369	NM_001206885	1500	Hs.166011	NM_001331	ENSG00000198561	CTNND1	BCDS2|CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN)	catenin delta 1	protein-coding
263	chr5	53755315	53757390	+	0	NA	Intergenic	LTR16D1|LTR|ERVL	4921	NM_006308	8988	Hs.41707	NM_006308	ENSG00000169271	HSPB3	DHMN2C|HMN2C|HSPL27	heat shock protein family B (small) member 3	protein-coding
60	chr1	204144862	204147827	+	0	NA	Intergenic	L2b|LINE|L2	-10879	NM_000537	5972	Hs.3210	NM_000537	ENSG00000143839	REN	HNFJ2	renin	protein-coding
47	chr12	69198963	69204882	+	0	NA	promoter-TSS (NM_002392)	promoter-TSS (NM_002392)	-30	NM_001145339	4193	Hs.484551	NM_002392	ENSG00000135679	MDM2	ACTFS|HDMX|hdm2	MDM2 proto-oncogene	protein-coding
224	chr12	94290856	94293844	+	0	NA	intron (NR_135017, intron 2 of 2)	AluSz|SINE|Alu	45032	NR_135017	105369911	Hs.577495	NR_135017	ENSG00000257283	LOC105369911	-	uncharacterized LOC105369911	ncRNA
533	chr11	46635096	46642275	+	0	NA	promoter-TSS (NM_001346338)	promoter-TSS (NM_001346338)	92	NM_173811	283254	Hs.714463	NM_173811	ENSG00000180423	HARBI1	C11orf77	harbinger transposase derived 1	protein-coding
583	chr15	90822912	90824728	+	0	NA	Intergenic	AluSz6|SINE|Alu	-14829	NR_102428	10519	Hs.715556	NM_006384	ENSG00000185043	CIB1	CIB|CIBP|KIP1|PRKDCIP|SIP2-28	calcium and integrin binding 1	protein-coding
166	chr17	73442847	73446633	+	0	NA	Intergenic	Intergenic	-7805	NM_001351202	9772	Hs.514474	NM_014738	ENSG00000177728	TMEM94	KIAA0195	transmembrane protein 94	protein-coding
835	chr19	51013260	51016257	+	0	NA	promoter-TSS (NM_001270686)	promoter-TSS (NM_001270686)	-146	NM_001270640	126119	Hs.467151	NM_138334	ENSG00000161677	JOSD2	SBBI54	Josephin domain containing 2	protein-coding
901	chr3	197352585	197358006	+	0	NA	promoter-TSS (NR_003266)	promoter-TSS (NR_003266)	-543	NR_003266	220729	Hs.478854	NR_003266	ENSG00000214135	LOC220729	-	succinate dehydrogenase complex flavoprotein subunit A pseudogene	pseudo
668	chr19	47742120	47751815	+	0	NA	Intergenic	(TCTCTG)n|Simple_repeat|Simple_repeat	-10944	NM_001127241	27113	Hs.467020	NM_014417	ENSG00000105327	BBC3	JFY-1|JFY1|PUMA	BCL2 binding component 3	protein-coding
419	chr22	22199762	22228543	+	0	NA	intron (NM_138957, intron 1 of 7)	A-rich|Low_complexity|Low_complexity	7818	NM_138957	5594	Hs.431850	NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
93	chr3	196480737	196482566	+	0	NA	intron (NM_002577, intron 1 of 14)	L1M6|LINE|L1	14923	NM_002577	5062	Hs.518530	NM_002577	ENSG00000180370	PAK2	PAK65|PAKgamma	p21 (RAC1) activated kinase 2	protein-coding
19	chr8	117772557	117781733	+	0	NA	Intergenic	Intergenic	-1597	NM_032334	84294	Hs.86970	NM_032334	ENSG00000147679	UTP23	C8orf53	UTP23, small subunit processome component	protein-coding
113	chr3	5389095	5392936	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-99075	NR_039953	100616334		NR_039953	ENSG00000265180	MIR4790	-	microRNA 4790	ncRNA
498	chr5	171576826	171578585	+	0	NA	intron (NM_005990, intron 2 of 18)	intron (NM_005990, intron 2 of 18)	37641	NM_005990	6793	Hs.744005	NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
641	chr1	40517918	40530763	+	0	NA	intron (NM_001350484, intron 2 of 13)	AluSz|SINE|Alu	17817	NM_001350481	10487	Hs.370581	NM_006367	ENSG00000131236	CAP1	CAP|CAP1-PEN	cyclase associated actin cytoskeleton regulatory protein 1	protein-coding
999	chr12	123447135	123453141	+	0	NA	intron (NM_001243014, intron 1 of 11)	intron (NM_001243014, intron 1 of 11)	918	NM_001243013	23457	Hs.511951	NM_019624	ENSG00000150967	ABCB9	EST122234|TAPL	ATP binding cassette subfamily B member 9	protein-coding
689	chr8	23098010	23116328	+	0	NA	intron (NM_152272, intron 3 of 10)	intron (NM_152272, intron 3 of 10)	3064	NM_001317899	91782	Hs.5019	NM_152272	ENSG00000147457	CHMP7	-	charged multivesicular body protein 7	protein-coding
850	chr19	45958195	45960941	+	0	NA	Intergenic	Intergenic	-11685	NM_006732	2354	Hs.590958	NM_006732	ENSG00000125740	FOSB	AP-1|G0S3|GOS3|GOSB	FosB proto-oncogene, AP-1 transcription factor subunit	protein-coding
587	chr1	109840785	109844527	+	0	NA	intron (NM_001010985, intron 1 of 8)	intron (NM_001010985, intron 1 of 8)	7007	NM_001010985	343263	Hs.443402	NM_001010985	ENSG00000221986	MYBPHL	-	myosin binding protein H like	protein-coding
891	chr8	146226120	146232613	+	0	NA	non-coding (NR_026974, exon 1 of 1)	non-coding (NR_026974, exon 1 of 1)	-1081	NR_023392	286101	Hs.367856	NR_023392		ZNF252P	ZNF252	zinc finger protein 252, pseudogene	pseudo
898	chr11	4627674	4630728	+	0	NA	intron (NM_018073, intron 1 of 6)	CpG	288	NM_001304496	55128	Hs.523438	NM_018073	ENSG00000167333	TRIM68	GC109|RNF137|SS-56|SS56	tripartite motif containing 68	protein-coding
864	chr12	112274234	112286280	+	0	NA	promoter-TSS (NR_152607)	promoter-TSS (NR_152607)	225	NM_139078	8550	Hs.333120	NM_003668	ENSG00000089022	MAPKAPK5	MAPKAP-K5|MK-5|MK5|PRAK	mitogen-activated protein kinase-activated protein kinase 5	protein-coding
386	chr12	124724713	124726561	+	0	NA	intron (NM_001347902, intron 3 of 4)	intron (NM_001347902, intron 3 of 4)	-48073	NM_181709	144347	Hs.432901	NM_181709	ENSG00000178882	RFLNA	CFM2|FAM101A	refilin A	protein-coding
584	chr1	114440167	114464130	+	0	NA	intron (NM_001319946, intron 2 of 2)	MARNA|DNA|TcMar-Mariner	4233	NM_001319946	64858	Hs.591412	NM_022836	ENSG00000118655	DCLRE1B	APOLLO|SNM1B|SNMIB	DNA cross-link repair 1B	protein-coding
886	chr2	55286553	55287788	+	0	NA	intron (NM_001321904, intron 2 of 9)	intron (NM_001321904, intron 2 of 9)	-9217	NM_001321859	57142	Hs.637850	NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
447	chr15	66584296	66588398	+	0	NA	5' UTR (NM_001323945, exon 1 of 17)	5' UTR (NM_001323945, exon 1 of 17)	189	NM_001323948	115752	Hs.446251	NM_133375	ENSG00000166938	DIS3L	DIS3L1	DIS3 like exosome 3'-5' exoribonuclease	protein-coding
462	chr17	74768433	74769909	+	0	NA	intron (NM_001242532, intron 10 of 12)	L1MEc|LINE|L1	-25955	NR_110837	101928514	Hs.617206	NR_110837	ENSG00000267065	LINC02080	-	long intergenic non-protein coding RNA 2080	ncRNA
691	chr2	201931905	201939010	+	0	NA	intron (NM_001321622, intron 1 of 12)	intron (NM_001321622, intron 1 of 12)	894	NM_001321625	285172	Hs.24701	NM_173822	ENSG00000155744	FAM126B	HYCC2	family with sequence similarity 126 member B	protein-coding
771	chr1	206821546	206839324	+	0	NA	Intergenic	Intergenic	21554	NM_003582	8444	Hs.164267	NM_003582	ENSG00000143479	DYRK3	DYRK5|RED|REDK|hYAK3-2	dual specificity tyrosine phosphorylation regulated kinase 3	protein-coding
658	chr19	11466034	11468510	+	0	NA	intron (NM_022737, intron 1 of 9)	L2b|LINE|L2	1210	NM_022737	64748	Hs.6846	NM_022737	ENSG00000105520	PLPPR2	LPPR2|PRG4	phospholipid phosphatase related 2	protein-coding
994	chr22	23360273	23361855	+	0	NA	Intergenic	L1MEd|LINE|L1	-51476	NM_002073	2781	Hs.584760	NM_002073	ENSG00000128266	GNAZ	gz-alpha	G protein subunit alpha z	protein-coding
59	chr1	205223911	205227018	+	0	NA	promoter-TSS (NM_001331034)	promoter-TSS (NM_001331034)	135	NM_001297613	9911	Hs.6360	NM_014858	ENSG00000133069	TMCC2	HUCEP11	transmembrane and coiled-coil domain family 2	protein-coding
88	chr14	61567108	61573277	+	0	NA	Intergenic	Intergenic	-121784	NM_001350253	57570	Hs.380159	NM_020810	ENSG00000126814	TRMT5	COXPD26|KIAA1393|TRM5	tRNA methyltransferase 5	protein-coding
909	chr14	102779369	102788617	+	0	NA	5' UTR (NM_001267827, exon 1 of 8)	5' UTR (NM_001267827, exon 1 of 8)	279	NM_001267827	55778	Hs.743359	NM_018335	ENSG00000022976	ZNF839	C14orf131	zinc finger protein 839	protein-coding
981	chr10	121189288	121191910	+	0	NA	intron (NM_005308, intron 7 of 15)	intron (NM_005308, intron 7 of 15)	53115	NR_039829	100616398		NR_039829	ENSG00000265719	MIR4681	-	microRNA 4681	ncRNA
7	chr17	38801325	38806978	+	0	NA	promoter-TSS (NM_003079)	promoter-TSS (NM_003079)	-48	NM_003079	6605	Hs.743978	NM_003079	ENSG00000073584	SMARCE1	BAF57|CSS5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding
577	chr17	45724438	45731556	+	0	NA	promoter-TSS (NM_001276453)	promoter-TSS (NM_001276453)	-565	NM_001276453	3837	Hs.532793	NM_002265	ENSG00000108424	KPNB1	IMB1|IPO1|IPOB|Impnb|NTF97	karyopherin subunit beta 1	protein-coding
162	chr5	159613381	159635272	+	0	NA	intron (NM_001130958, intron 1 of 6)	intron (NM_001130958, intron 1 of 6)	-1722	NM_001040442	2172	Hs.519719	NM_001445	ENSG00000170231	FABP6	I-15P|I-BABP|I-BALB|I-BAP|ILBP|ILBP3|ILLBP	fatty acid binding protein 6	protein-coding
900	chr11	65762050	65778011	+	0	NA	promoter-TSS (NM_001242481)	promoter-TSS (NM_001242481)	-393	NM_032325	84285	Hs.425178	NM_032325	ENSG00000175376	EIF1AD	haponin	eukaryotic translation initiation factor 1A domain containing	protein-coding
610	chr10	29141697	29143015	+	0	NA	intron (NM_001278522, intron 3 of 4)	LTR33|LTR|ERVL	7019	NM_001278522	283080		NM_001278522		C10orf126	bA492M23.1	chromosome 10 open reading frame 126	protein-coding
140	chr15	85519914	85528496	+	0	NA	promoter-TSS (NM_002605)	promoter-TSS (NM_002605)	461	NM_001243137	5151	Hs.9333	NM_002605	ENSG00000073417	PDE8A	HsT19550	phosphodiesterase 8A	protein-coding
990	chr6	34687377	34692353	+	0	NA	Intergenic	AluSc5|SINE|Alu	25143	NR_134626	101929243	Hs.643498	NR_134625	ENSG00000272288	LOC101929243	-	uncharacterized LOC101929243	ncRNA
48	chr20	34040482	34046077	+	0	NA	promoter-TSS (NM_001319138)	promoter-TSS (NM_001319138)	56	NM_007186	11190	Hs.443976	NM_007186	ENSG00000126001	CEP250	C-NAP1|CEP2|CNAP1	centrosomal protein 250	protein-coding
566	chr1	153497685	153500738	+	0	NA	Intergenic	MER83B-int|LTR|ERV1	9506	NM_014624	6277	Hs.275243	NM_014624	ENSG00000197956	S100A6	2A9|5B10|CABP|CACY|PRA|S10A6	S100 calcium binding protein A6	protein-coding
434	chr3	195309755	195312938	+	0	NA	promoter-TSS (NM_001647)	promoter-TSS (NM_001647)	-270	NM_001647	347	Hs.522555	NM_001647	ENSG00000189058	APOD	-	apolipoprotein D	protein-coding
389	chr11	125456674	125458681	+	0	NA	intron (NR_132372, intron 1 of 2)	intron (NR_132372, intron 1 of 2)	4786	NR_132372	105369550	Hs.732083	NR_132372	ENSG00000254671	STT3A-AS1	-	STT3A antisense RNA 1	ncRNA
112	chr17	7304986	7309680	+	0	NA	non-coding (NR_037719, exon 1 of 10)	non-coding (NR_037719, exon 1 of 10)	117	NR_037719	100529211	Hs.534591	NR_037719		TMEM256-PLSCR3	C17orf61-PLSCR3	TMEM256-PLSCR3 readthrough (NMD candidate)	ncRNA
627	chr22	20085428	20090701	+	0	NA	intron (NM_001190326, intron 8 of 12)	intron (NM_001190326, intron 8 of 12)	14210	NR_106874	102465490		NR_106874	ENSG00000278278	MIR6816	hsa-mir-6816	microRNA 6816	ncRNA
256	chr19	49156687	49158923	+	0	NA	intron (NR_004401, intron 1 of 4)	L2c|LINE|L2	-8236	NM_001217	770	Hs.428446	NM_001217	ENSG00000063180	CA11	CA-RP|CA-RP II|CA-XI|CARP-2|CARPX1	carbonic anhydrase 11	protein-coding
107	chr10	75933089	75940280	+	0	NA	intron (NM_001123, intron 1 of 10)	CpG	437	NM_001202449	132	Hs.656586	NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
695	chr19	14141494	14144148	+	0	NA	TTS (NM_001311197)	TTS (NM_001311197)	269	NM_004843	9466	Hs.132781	NM_004843	ENSG00000104998	IL27RA	CRL1|IL-27RA|IL27R|TCCR|WSX1|zcytor1	interleukin 27 receptor subunit alpha	protein-coding
836	chr1	24113569	24121149	+	0	NA	promoter-TSS (NM_007260)	promoter-TSS (NM_007260)	-287	NM_007260	11313	Hs.533479	NM_007260	ENSG00000011009	LYPLA2	APT-2|APT2|DJ886K2.4	lysophospholipase II	protein-coding
490	chr9	90353720	90359026	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	15399	NM_145918	1514	Hs.731507	NM_001912	ENSG00000135047	CTSL	CATL|CTSL1|MEP	cathepsin L	protein-coding
253	chr8	86977765	86979972	+	0	NA	Intergenic	Intergenic	103058	NM_033126	85481	Hs.566854	NM_033126	ENSG00000147613	PSKH2	-	protein serine kinase H2	protein-coding
795	chr16	2940313	2941627	+	0	NA	intron (NM_138439, intron 1 of 3)	L1MC3|LINE|L1	7774	NM_138439	114984	Hs.534525	NM_138439	ENSG00000162076	FLYWCH2	-	FLYWCH family member 2	protein-coding
411	chr19	11749842	11752006	+	0	NA	Intergenic	CpG	-33889	NR_028594	401898	Hs.672384	NM_001013691		ZNF833P	ZNF833	zinc finger protein 833, pseudogene	pseudo
865	chr2	113457578	113459814	+	0	NA	Intergenic	MER66A|LTR|ERV1	-20367	NM_001350494	284958	Hs.589714	NM_001350494	ENSG00000144130	NT5DC4	-	5'-nucleotidase domain containing 4	protein-coding
600	chr7	138737586	138740651	+	0	NA	intron (NM_020119, intron 10 of 12)	intron (NM_020119, intron 10 of 12)	-18343	NM_080660	92092	Hs.512833	NM_080660	ENSG00000146858	ZC3HAV1L	C7orf39	zinc finger CCCH-type containing, antiviral 1 like	protein-coding
599	chr14	103790598	103814867	+	0	NA	intron (NM_001969, intron 4 of 11)	AluSg|SINE|Alu	-1454	NR_002964	677811	Hs.658237	NR_002964	ENSG00000272533	SNORA28	ACA28	small nucleolar RNA, H/ACA box 28	snoRNA
314	chr11	66493272	66498719	+	0	NA	Intergenic	CpG	-7125	NM_006946	6712	Hs.26915	NM_006946	ENSG00000173898	SPTBN2	GTRAP41|SCA5|SCAR14	spectrin beta, non-erythrocytic 2	protein-coding
813	chr14	21962335	21968818	+	0	NA	TTS (NM_019852)	TTS (NM_019852)	13941	NM_019852	56339	Hs.168799	NM_019852	ENSG00000165819	METTL3	IME4|M6A|MT-A70|Spo8|hMETTL3	methyltransferase like 3	protein-coding
301	chr1	28993074	28998166	+	0	NA	intron (NM_024482, intron 1 of 9)	GC_rich|Low_complexity|Low_complexity	380	NM_006582	10691	Hs.632373	NM_006582	ENSG00000162419	GMEB1	P96PIF|PIF96	glucocorticoid modulatory element binding protein 1	protein-coding
672	chr4	38514363	38548475	+	0	NA	Intergenic	Intergenic	-6618	NR_110951	101928776	Hs.586147	NR_110951	ENSG00000249534	LINC01258	-	long intergenic non-protein coding RNA 1258	ncRNA
454	chr4	170927022	170929940	+	0	NA	intron (NM_021647, intron 1 of 2)	intron (NM_021647, intron 1 of 2)	-3538	NM_001301648	9848	Hs.593942	NM_021647	ENSG00000198948	MFAP3L	NYD-sp9	microfibril associated protein 3 like	protein-coding
682	chr10	112616371	112620743	+	0	NA	Intergenic	Intergenic	12105	NR_026932	282997	Hs.599931	NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
530	chr21	44348749	44352662	+	0	NA	Intergenic	AluJr|SINE|Alu	-4997	NM_001308491	90625		NM_001308491		ERVH48-1	C21orf105|NDUFV3-AS1	endogenous retrovirus group 48 member 1	protein-coding
137	chr2	71605193	71607008	+	0	NA	intron (NM_001014972, intron 8 of 27)	L2a|LINE|L2	47215	NM_014497	27332	Hs.434401	NM_014497	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
941	chr22	32143028	32152682	+	0	NA	Intergenic	AluY|SINE|Alu	-1735	NM_173566	253143	Hs.438906	NM_173566	ENSG00000183530	PRR14L	C22orf30	proline rich 14 like	protein-coding
895	chr9	101792158	101794537	+	0	NA	intron (NM_001855, intron 16 of 41)	intron (NM_001855, intron 16 of 41)	-74024	NM_004612	7046	Hs.494622	NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
742	chr3	49821668	49826597	+	0	NA	promoter-TSS (NM_001242829)	promoter-TSS (NM_001242829)	-159	NM_001006115	9807	Hs.386168	NM_153273	ENSG00000176095	IP6K1	IHPK1|PiUS	inositol hexakisphosphate kinase 1	protein-coding
647	chr5	173265106	173268937	+	0	NA	Intergenic	L2a|LINE|L2	-48310	NM_001308189	80315	Hs.127126	NM_030627	ENSG00000113742	CPEB4	CPE-BP4|hCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding
789	chr4	178240137	178242414	+	0	NA	intron (NM_018248, intron 1 of 9)	intron (NM_018248, intron 1 of 9)	10284	NM_018248	55247	Hs.405467	NM_018248	ENSG00000109674	NEIL3	FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3	nei like DNA glycosylase 3	protein-coding
328	chr11	117972254	117975423	+	0	NA	exon (NM_019894, exon 4 of 13)	exon (NM_019894, exon 4 of 13)	-16330	NM_001354434	100526771	Hs.627426	NM_001354434		SMIM35	TMPRSS4-AS1	small integral membrane protein 35	protein-coding
699	chr2	62112001	62118646	+	0	NA	promoter-TSS (NM_001321782)	promoter-TSS (NM_001321782)	483	NM_001256721	10575	Hs.421509	NM_006430	ENSG00000115484	CCT4	CCT-DELTA|Cctd|SRB	chaperonin containing TCP1 subunit 4	protein-coding
172	chr19	40020966	40035596	+	0	NA	Intergenic	L1MC4a|LINE|L1	2557	NM_153232	163126	Hs.18949	NM_153232	ENSG00000176396	EID2	CRI2|EID-2	EP300 interacting inhibitor of differentiation 2	protein-coding
333	chr1	65902101	65904817	+	0	NA	intron (NM_001003679, intron 2 of 19)	L2a|LINE|L2	17060	NM_001198681	54741	Hs.23581	NM_017526	ENSG00000213625	LEPROT	LEPR|OB-RGRP|OBRGRP|VPS55	leptin receptor overlapping transcript	protein-coding
285	chr17	79446061	79456781	+	0	NA	Intergenic	CpG	28404	NM_001614	71	Hs.514581	NM_001614	ENSG00000184009	ACTG1	ACT|ACTG|DFNA20|DFNA26|HEL-176	actin gamma 1	protein-coding
440	chr19	14152805	14154473	+	0	NA	intron (NM_004843, intron 6 of 13)	intron (NM_004843, intron 6 of 13)	11087	NM_004843	9466	Hs.132781	NM_004843	ENSG00000104998	IL27RA	CRL1|IL-27RA|IL27R|TCCR|WSX1|zcytor1	interleukin 27 receptor subunit alpha	protein-coding
155	chr18	2299063	2306775	+	0	NA	Intergenic	LTR10A|LTR|ERV1	268583	NM_001308401	64863	Hs.126888	NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase like 4	protein-coding
517	chr3	195678745	195682571	+	0	NA	Intergenic	Intergenic	36492	NR_003264	255812	Hs.566872	NR_003264	ENSG00000185485	SDHAP1	SDHAL1|SDHALP1	succinate dehydrogenase complex flavoprotein subunit A pseudogene 1	pseudo
50	chr18	3437269	3463100	+	0	NA	promoter-TSS (NM_003244)	promoter-TSS (NM_003244)	14	NM_003244	7050	Hs.373550	NM_003244	ENSG00000177426	TGIF1	HPE4|TGIF	TGFB induced factor homeobox 1	protein-coding
292	chr22	42339599	42345838	+	0	NA	promoter-TSS (NM_001304372)	promoter-TSS (NM_001304372)	40	NM_001304372	79019	Hs.208912	NM_024053	ENSG00000100162	CENPM	C22orf18|CENP-M|PANE1	centromere protein M	protein-coding
608	chr1	33176651	33179310	+	0	NA	Intergenic	Intergenic	-9619	NM_030786	81493	Hs.712631	NM_030786	ENSG00000162520	SYNC	SYNC1|SYNCOILIN	syncoilin, intermediate filament protein	protein-coding
912	chr22	20275852	20291127	+	0	NA	Intergenic	Intergenic	24139	NM_033257	85359	Hs.410965	NM_033257	ENSG00000128185	DGCR6L	DGCR6	DiGeorge syndrome critical region gene 6 like	protein-coding
152	chr12	48161514	48181415	+	0	NA	intron (NM_017842, intron 1 of 2)	L1ME3F|LINE|L1	4497	NM_017842	55652	Hs.438867	NM_017842	ENSG00000211584	SLC48A1	HRG-1|HRG1|hHRG-1	solute carrier family 48 member 1	protein-coding
310	chr1	39648322	39652165	+	0	NA	intron (NM_012090, intron 1 of 92)	intron (NM_012090, intron 1 of 92)	100404	NM_012090	23499	Hs.472475	NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|MACF|OFC4	microtubule-actin crosslinking factor 1	protein-coding
830	chr10	126403692	126408980	+	0	NA	intron (NM_014661, intron 1 of 4)	intron (NM_014661, intron 1 of 4)	13739	NR_120630	101927944	Hs.437448	NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
283	chr14	31752532	31754191	+	0	NA	Intergenic	Intergenic	-76632	NM_015382	25831	Hs.708017	NM_015382	ENSG00000092148	HECTD1	EULIR	HECT domain E3 ubiquitin protein ligase 1	protein-coding
75	chr12	56860479	56865446	+	0	NA	exon (NM_207344, exon 2 of 2)	exon (NM_207344, exon 2 of 2)	661	NM_207344	283377	Hs.128676	NM_207344	ENSG00000176422	SPRYD4	-	SPRY domain containing 4	protein-coding
948	chr6	34350519	34362207	+	0	NA	intron (NM_001202470, intron 5 of 8)	L3|LINE|CR1	4094	NM_006703	11165	Hs.188882	NM_006703	ENSG00000272325	NUDT3	DIPP|DIPP-1|DIPP1	nudix hydrolase 3	protein-coding
855	chr1	227124174	227134231	+	0	NA	intron (NM_020247, intron 1 of 14)	AluSx1|SINE|Alu	1264	NM_020247	56997	Hs.118241	NM_020247	ENSG00000163050	COQ8A	ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9	coenzyme Q8A	protein-coding
308	chr6	31136499	31142746	+	0	NA	Intergenic	Intergenic	-1152	NM_002701	5460	Hs.249184	NM_002701	ENSG00000204531	POU5F1	OCT3|OCT4|OTF-3|OTF3|OTF4|Oct-3|Oct-4	POU class 5 homeobox 1	protein-coding
731	chr7	43873628	43875164	+	0	NA	Intergenic	LTR12F|LTR|ERV1	34749	NM_032014	64951	Hs.284286	NM_032014	ENSG00000062582	MRPS24	HSPC335|MRP-S24|S24mt|bMRP-47|bMRP47	mitochondrial ribosomal protein S24	protein-coding
62	chr12	121903094	121906366	+	0	NA	intron (NM_001005366, intron 12 of 22)	intron (NM_001005366, intron 12 of 22)	-22575	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
12	chr1	161507893	161515426	+	0	NA	3' UTR (NM_001329122, exon 4 of 4)	3' UTR (NM_001329122, exon 4 of 4)	8234	NM_001329122	2214	Hs.372679	NM_000569	ENSG00000203747	FCGR3A	CD16|CD16A|FCG3|FCGR3|FCGRIII|FCR-10|FCRIII|FCRIIIA|IGFR3|IMD20	Fc fragment of IgG receptor IIIa	protein-coding
758	chr17	79257477	79261828	+	0	NA	intron (NM_001037984, intron 2 of 15)	intron (NM_001037984, intron 2 of 15)	9487	NM_001037984	124565	Hs.352240	NM_138570	ENSG00000157637	SLC38A10	PP1744	solute carrier family 38 member 10	protein-coding
874	chr19	14226827	14230636	+	0	NA	promoter-TSS (NM_002730)	promoter-TSS (NM_002730)	-172	NM_002730	5566	Hs.631630	NM_002730	ENSG00000072062	PRKACA	PKACA|PPNAD4	protein kinase cAMP-activated catalytic subunit alpha	protein-coding
787	chr1	203660235	203664205	+	0	NA	intron (NM_001001396, intron 2 of 21)	intron (NM_001001396, intron 2 of 21)	-36489	NR_003019	677843	Hs.676135	NR_003019	ENSG00000221643	SNORA77	ACA63|SNORA77A	small nucleolar RNA, H/ACA box 77	snoRNA
450	chr5	32386609	32392786	+	0	NA	intron (NR_144318, intron 12 of 18)	AluJb|SINE|Alu	4884	NR_030305	693164		NR_030305	ENSG00000207956	MIR579	MIRN579|hsa-mir-579	microRNA 579	ncRNA
708	chr1	92762747	92766724	+	0	NA	promoter-TSS (NR_135089)	promoter-TSS (NR_135089)	-169	NR_135089	11146	Hs.49105	NM_007070	ENSG00000174842	GLMN	FAP|FAP48|FAP68|FKBPAP|GLML|GVM|VMGLOM	glomulin, FKBP associated protein	protein-coding
733	chr3	185404819	185408342	+	0	NA	intron (NM_001007225, intron 6 of 14)	MIRc|SINE|MIR	-24460	NR_126326	646600	Hs.647949	NR_027317	ENSG00000163915	IGF2BP2-AS1	C3orf65	IGF2BP2 antisense RNA 1	ncRNA
322	chr14	74110352	74113240	+	0	NA	intron (NM_031427, intron 1 of 7)	intron (NM_031427, intron 1 of 7)	218	NM_001201366	83544	Hs.271270	NM_031427	ENSG00000119661	DNAL1	C14orf168|CILD16|LC1	dynein axonemal light chain 1	protein-coding
319	chr22	31606220	31610844	+	0	NA	intron (NM_005569, intron 1 of 15)	intron (NM_005569, intron 1 of 15)	282	NM_005569	3985	Hs.474596	NM_005569	ENSG00000182541	LIMK2	-	LIM domain kinase 2	protein-coding
793	chr16	31151463	31154950	+	0	NA	exon (NM_173502, exon 11 of 15)	exon (NM_173502, exon 11 of 15)	-6123	NM_002773	5652	Hs.75799	NM_002773	ENSG00000052344	PRSS8	CAP1|PROSTASIN	serine protease 8	protein-coding
725	chr2	47580006	47589691	+	0	NA	Intergenic	Intergenic	-11439	NM_002354	4072	Hs.542050	NM_002354	ENSG00000119888	EPCAM	DIAR5|EGP-2|EGP314|EGP40|ESA|HNPCC8|KS1/4|KSA|M4S1|MIC18|MK-1|TACSTD1|TROP1	epithelial cell adhesion molecule	protein-coding
754	chr16	89447517	89451774	+	0	NA	intron (NM_013275, intron 2 of 12)	intron (NM_013275, intron 2 of 12)	-47681	NR_110932	101927817	Hs.667942	NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
892	chr14	24581402	24587276	+	0	NA	promoter-TSS (NM_181357)	promoter-TSS (NM_181357)	-116	NM_001354768	4901	Hs.652297	NM_006177	ENSG00000129535	NRL	D14S46E|NRL-MAF|RP27	neural retina leucine zipper	protein-coding
857	chr8	23345295	23357563	+	0	NA	Intergenic	Intergenic	-34879	NM_001317813	51312	Hs.596025	NM_016612	ENSG00000147454	SLC25A37	HT015|MFRN|MFRN1|MSC|MSCP|PRO1278|PRO1584|PRO2217	solute carrier family 25 member 37	protein-coding
388	chr1	32764058	32766238	+	0	NA	intron (NM_004964, intron 1 of 13)	intron (NM_004964, intron 1 of 13)	7440	NM_004964	3065	Hs.88556	NM_004964	ENSG00000116478	HDAC1	GON-10|HD1|RPD3|RPD3L1	histone deacetylase 1	protein-coding
868	chr1	151733852	151738402	+	0	NA	non-coding (NR_125331, exon 1 of 7)	non-coding (NR_125331, exon 1 of 7)	171	NM_001301371	51686	Hs.713789	NM_016178	ENSG00000143450	OAZ3	AZ3|OAZ-t|TISP15	ornithine decarboxylase antizyme 3	protein-coding
565	chr7	151328541	151331426	+	0	NA	promoter-TSS (NM_024429)	promoter-TSS (NM_024429)	-279	NM_001304531	51422	Hs.647072	NM_016203	ENSG00000106617	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase AMP-activated non-catalytic subunit gamma 2	protein-coding
644	chr11	63272624	63275269	+	0	NA	exon (NM_033101, exon 1 of 9)	exon (NM_033101, exon 1 of 9)	422	NM_033101	85329	Hs.502774	NM_033101	ENSG00000133317	LGALS12	GAL12|GRIP1	galectin 12	protein-coding
778	chr18	9503671	9508586	+	0	NA	intron (NM_006788, intron 1 of 9)	MER65C|LTR|ERV1	30598	NM_006788	10928	Hs.528993	NM_006788	ENSG00000017797	RALBP1	RIP1|RLIP1|RLIP76	ralA binding protein 1	protein-coding
241	chr16	9158297	9176847	+	0	NA	Intergenic	AluSx1|SINE|Alu	-17965	NM_014117	29035	Hs.221497	NM_014117	ENSG00000182831	C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
843	chr5	95051368	95075788	+	0	NA	intron (NM_001349303, intron 1 of 8)	MLT1J2|LTR|ERVL-MaLR	-3272	NM_014899	22836	Hs.445030	NM_014899	ENSG00000164292	RHOBTB3	-	Rho related BTB domain containing 3	protein-coding
593	chr1	249164210	249171598	+	0	NA	Intergenic	CpG	-14589	NM_017865	55657	Hs.377705	NM_017865	ENSG00000171163	ZNF692	AREBP|Zfp692	zinc finger protein 692	protein-coding
122	chr6	35418072	35423147	+	0	NA	intron (NM_021922, intron 1 of 9)	CpG	471	NM_021922	2178	Hs.302003	NM_021922	ENSG00000112039	FANCE	FACE|FAE	Fanconi anemia complementation group E	protein-coding
89	chr6	15159253	15161787	+	0	NA	Intergenic	AluSx|SINE|Alu	-85686	NM_004973	3720	Hs.269059	NM_004973	ENSG00000008083	JARID2	JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
479	chr3	178576556	178578787	+	0	NA	intron (NR_126561, intron 1 of 5)	intron (NR_126561, intron 1 of 5)	522	NR_126560	104797538	Hs.478363	NR_126560		KCNMB2-AS1	-	KCNMB2 antisense RNA 1	ncRNA
3	chr1	24097537	24108995	+	0	NA	intron (NR_038280, intron 1 of 3)	AluJb|SINE|Alu	1521	NR_038280	100506963	Hs.592549	NR_038280	ENSG00000236810	ELOA-AS1	TCEB3-AS1	ELOA antisense RNA 1	ncRNA
334	chr9	88892342	88904724	+	0	NA	Intergenic	Intergenic	-1043	NM_030940	81689	Hs.449291	NM_030940	ENSG00000135070	ISCA1	HBLD2|ISA1|MMDS5|hIscA	iron-sulfur cluster assembly 1	protein-coding
806	chr16	67999098	68005410	+	0	NA	intron (NM_001145961, intron 1 of 23)	CpG	343	NM_001145961	6560	Hs.10094	NM_005072	ENSG00000124067	SLC12A4	CTC-479C5.17|KCC1|hKCC1	solute carrier family 12 member 4	protein-coding
79	chr12	6639667	6656498	+	0	NA	TTS (NM_001289745)	TTS (NM_001289745)	3697	NM_001256799	2597	Hs.544577	NM_002046	ENSG00000111640	GAPDH	G3PD|GAPD|HEL-S-162eP	glyceraldehyde-3-phosphate dehydrogenase	protein-coding
67	chr11	9265110	9267243	+	0	NA	intron (NM_001348748, intron 2 of 23)	AluSp|SINE|Alu	20697	NM_001348750	23258	Hs.501857	NM_015213	ENSG00000184014	DENND5A	EIEE49|RAB6IP1	DENN domain containing 5A	protein-coding
385	chr19	18270315	18272912	+	0	NA	intron (NR_073517, intron 3 of 15)	intron (NR_073517, intron 3 of 15)	7625	NM_005027	5296	Hs.371344	NM_005027	ENSG00000105647	PIK3R2	MPPH|MPPH1|P85B|p85|p85-BETA	phosphoinositide-3-kinase regulatory subunit 2	protein-coding
210	chr11	47867089	47872657	+	0	NA	exon (NM_001318399, exon 1 of 3)	exon (NM_001318399, exon 1 of 3)	223	NM_015231	23279	Hs.643526	NM_015231	ENSG00000030066	NUP160	-	nucleoporin 160	protein-coding
33	chr1	44511625	44516364	+	0	NA	Intergenic	Intergenic	-16830	NM_001328630	6536	Hs.442590	NM_006934	ENSG00000196517	SLC6A9	GCENSG|GLYT1	solute carrier family 6 member 9	protein-coding
947	chr16	67805894	67809164	+	0	NA	intron (NM_001320238, intron 1 of 12)	intron (NM_001320238, intron 1 of 12)	33026	NM_001320238	57610	Hs.368569	NM_020850	ENSG00000141084	RANBP10	-	RAN binding protein 10	protein-coding
257	chr7	73622996	73625053	+	0	NA	promoter-TSS (NM_014146)	promoter-TSS (NM_014146)	-63	NM_032464	7462	Hs.741249	NM_014146	ENSG00000086730	LAT2	HSPC046|LAB|NTAL|WBSCR15|WBSCR5|WSCR5	linker for activation of T cells family member 2	protein-coding
692	chr11	63751694	63756217	+	0	NA	non-coding (NR_003089, exon 1 of 6)	non-coding (NR_003089, exon 1 of 6)	630	NM_017670	55611	Hs.473788	NM_017670	ENSG00000167770	OTUB1	HSPC263|OTB1|OTU1	OTU deubiquitinase, ubiquitin aldehyde binding 1	protein-coding
640	chr17	30611476	30616366	+	0	NA	intron (NM_138328, intron 3 of 8)	MER91A|DNA|hAT-Tip100	20726	NM_001330181	162494	Hs.655027	NM_138328	ENSG00000141314	RHBDL3	RHBDL4|VRHO	rhomboid like 3	protein-coding
809	chr22	19828284	19847466	+	0	NA	3' UTR (NM_024627, exon 3 of 3)	3' UTR (NM_024627, exon 3 of 3)	4496	NM_024627	79680	Hs.105642	NM_024627	ENSG00000215012	RTL10	BOP|C22orf29	retrotransposon Gag like 10	protein-coding
954	chr4	1298465	1305398	+	0	NA	intron (NM_001017405, intron 1 of 8)	Tigger3a|DNA|TcMar-Tigger	-1300	NM_001297432	10296	Hs.139896	NM_005882	ENSG00000090316	MAEA	EMLP|EMP|GID9|HLC-10|PIG5	macrophage erythroblast attacher	protein-coding
203	chr16	4741296	4746058	+	0	NA	promoter-TSS (NM_032349)	promoter-TSS (NM_032349)	-17	NM_032349	84309	Hs.513315	NM_032349	ENSG00000168101	NUDT16L1	SDOS	nudix hydrolase 16 like 1	protein-coding
171	chr11	67978178	67984140	+	0	NA	promoter-TSS (NM_001300908)	promoter-TSS (NM_001300908)	80	NM_001300908	51111	Hs.632120	NM_016028	ENSG00000110066	KMT5B	CGI-85|CGI85|MRD51|SUV420H1	lysine methyltransferase 5B	protein-coding
601	chr21	38728421	38731577	+	0	NA	Intergenic	Intergenic	-7876	NM_001396	1859	Hs.368240	NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
130	chr4	77175680	77178655	+	0	NA	intron (NM_001242939, intron 1 of 6)	L1ME5|LINE|L1	4314	NM_001136570	100129583	Hs.720509	NM_001136570	ENSG00000189157	FAM47E	-	family with sequence similarity 47 member E	protein-coding
983	chrX	154269731	154289665	+	0	NA	intron (NM_023934, intron 3 of 4)	intron (NM_023934, intron 3 of 4)	19849	NM_001018024	100272147	Hs.6917	NM_001018024	ENSG00000182712	CMC4	C6.1B|MTCP1|MTCP1B|MTCP1NB|p8|p8MTCP1	C-X9-C motif containing 4	protein-coding
730	chr6	43589749	43609599	+	0	NA	intron (NM_001003690, intron 1 of 3)	AluSp|SINE|Alu	2395	NM_001003690	9587	Hs.122346	NM_014628	ENSG00000124688	MAD2L1BP	CMT2	MAD2L1 binding protein	protein-coding
940	chr2	74178539	74180403	+	0	NA	intron (NR_134897, intron 4 of 5)	intron (NR_134897, intron 4 of 5)	25518	NM_001318863	1716	Hs.469022	NM_001929	ENSG00000114956	DGUOK	MTDPS3|NCPH|PEOB4|dGK	deoxyguanosine kinase	protein-coding
82	chr3	48122565	48125092	+	0	NA	intron (NM_030885, intron 1 of 3)	L1MD3|LINE|L1	6941	NM_001134364	4134	Hs.517949	NM_002375	ENSG00000047849	MAP4	-	microtubule associated protein 4	protein-coding
194	chr4	186036106	186042841	+	0	NA	Intergenic	Intergenic	-24944	NM_001151	291	Hs.246506	NM_001151	ENSG00000151729	SLC25A4	AAC1|ANT|ANT 1|ANT1|MTDPS12|MTDPS12A|PEO2|PEO3|PEOA2|T1	solute carrier family 25 member 4	protein-coding
248	chr10	121375077	121378480	+	0	NA	Intergenic	THE1A|LTR|ERVL-MaLR	-20237	NR_136661	7073	Hs.501203	NM_003252	ENSG00000151923	TIAL1	TCBP|TIAR	TIA1 cytotoxic granule associated RNA binding protein like 1	protein-coding
958	chr8	125894814	125915174	+	0	NA	Intergenic	AluSz|SINE|Alu	-49256	NR_027321	157381	Hs.638933	NR_027321	ENSG00000249816	LINC00964	-	long intergenic non-protein coding RNA 964	ncRNA
681	chr14	37410402	37415262	+	0	NA	intron (NM_030631, intron 1 of 9)	intron (NM_030631, intron 1 of 9)	8764	NR_039725	100616280		NR_039725	ENSG00000266327	MIR4503	-	microRNA 4503	ncRNA
115	chr19	50073145	50075601	+	0	NA	intron (NM_001270960, intron 1 of 8)	AluSz|SINE|Alu	9456	NM_015953	51070	Hs.7236	NM_015953	ENSG00000142546	NOSIP	CGI-25	nitric oxide synthase interacting protein	protein-coding
197	chr11	77744843	77746665	+	0	NA	intron (NM_001203261, intron 2 of 2)	intron (NM_001203261, intron 2 of 2)	-11434	NM_023930	65987	Hs.709780	NM_023930	ENSG00000151364	KCTD14	-	potassium channel tetramerization domain containing 14	protein-coding
965	chr5	149427824	149433821	+	0	NA	intron (NM_014983, intron 19 of 19)	intron (NM_014983, intron 19 of 19)	35381	NR_109969	1436	Hs.586219	NM_005211	ENSG00000182578	CSF1R	C-FMS|CD115|CSF-1R|CSFR|FIM2|FMS|HDLS|M-CSF-R	colony stimulating factor 1 receptor	protein-coding
294	chr3	196293523	196300128	+	0	NA	intron (NM_001105573, intron 1 of 2)	intron (NM_001105573, intron 1 of 2)	1100	NM_001105573	200933	Hs.169815	NM_001105573	ENSG00000174013	FBXO45	Fbx45	F-box protein 45	protein-coding
457	chr22	20822183	20824586	+	0	NA	intron (NR_033825, intron 2 of 5)	intron (NR_033825, intron 2 of 5)	26786	NM_032775	84861	Hs.517419	NM_032775	ENSG00000099910	KLHL22	KELCHL	kelch like family member 22	protein-coding
214	chr22	24105456	24112176	+	0	NA	TTS (NM_182520)	TTS (NM_182520)	1343	NM_213720	400916	Hs.66915	NM_213720	ENSG00000250479	CHCHD10	C22orf16|FTDALS2|IMMD|MIX17A|N27C7-4|SMAJ	coiled-coil-helix-coiled-coil-helix domain containing 10	protein-coding
765	chr16	68342307	68347748	+	0	NA	promoter-TSS (NM_001290018)	promoter-TSS (NM_001290018)	10	NM_001290018	54496	Hs.640229	NM_019023	ENSG00000132600	PRMT7	SBIDDS	protein arginine methyltransferase 7	protein-coding
807	chr12	53227703	53230805	+	0	NA	Intergenic	Intergenic	-1177	NM_175834	338785	Hs.711471	NM_175834	ENSG00000185640	KRT79	K6L|KRT6L	keratin 79	protein-coding
325	chr22	50264913	50267132	+	0	NA	intron (NM_014838, intron 1 of 1)	Tigger1|DNA|TcMar-Tigger	18525	NM_014838	9889	Hs.475208	NM_014838	ENSG00000100426	ZBED4	-	zinc finger BED-type containing 4	protein-coding
303	chr3	48952100	48959247	+	0	NA	promoter-TSS (NM_001349224)	promoter-TSS (NM_001349224)	-580	NM_001349212	10425	Hs.633601	NM_006321	ENSG00000177479	ARIH2	ARI2|TRIAD1	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding
238	chr17	26642411	26649159	+	0	NA	promoter-TSS (NM_014573)	promoter-TSS (NM_014573)	-336	NM_014573	27346	Hs.199695	NM_014573	ENSG00000109084	TMEM97	MAC30	transmembrane protein 97	protein-coding
768	chr19	56163266	56172794	+	0	NA	intron (NM_001012478, intron 1 of 11)	MIRb|SINE|MIR	2614	NM_007279	11338	Hs.528007	NM_007279	ENSG00000063244	U2AF2	U2AF65	U2 small nuclear RNA auxiliary factor 2	protein-coding
161	chr22	22071443	22073317	+	0	NA	intron (NR_130910, intron 1 of 4)	AluJb|SINE|Alu	17743	NR_130910	29799	Hs.517436	NM_013313	ENSG00000100027	YPEL1	FKSG3	yippee like 1	protein-coding
738	chr11	34007436	34010020	+	0	NA	Intergenic	Intergenic	-64502	NM_203364	4076	Hs.471818	NM_005898	ENSG00000135387	CAPRIN1	GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI	cell cycle associated protein 1	protein-coding
464	chr6	27551050	27553122	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-109728	NR_038294	100507173	Hs.635987	NR_038292	ENSG00000281706	LINC01012	-	long intergenic non-protein coding RNA 1012	ncRNA
327	chr11	46256116	46279869	+	0	NA	Intergenic	L1PB1|LINE|L1	-31197	NM_052854	90993	Hs.405961	NM_052854	ENSG00000157613	CREB3L1	OASIS	cAMP responsive element binding protein 3 like 1	protein-coding
823	chr14	35096445	35101343	+	0	NA	intron (NM_021249, intron 1 of 12)	CpG	495	NM_152233	58533	Hs.276523	NM_021249	ENSG00000129515	SNX6	MSTP010|TFAF2	sorting nexin 6	protein-coding
391	chr9	115478004	115481615	+	0	NA	intron (NR_138055, intron 1 of 4)	AT_rich|Low_complexity|Low_complexity	620	NM_001329586	58493	Hs.658575	NM_021218	ENSG00000148153	INIP	C9orf80|HSPC043|MISE|SOSSC|SSBIP1|hSSBIP1	INTS3 and NABP interacting protein	protein-coding
711	chr1	229475046	229480640	+	0	NA	intron (NM_145257, intron 2 of 3)	intron (NM_145257, intron 2 of 3)	845	NM_145257	126731	Hs.585011	NM_145257	ENSG00000154429	CCSAP	C1orf96|CSAP	centriole, cilia and spindle associated protein	protein-coding
495	chr12	112120492	112126381	+	0	NA	promoter-TSS (NM_025247)	promoter-TSS (NM_025247)	364	NM_006768	8315	Hs.530940	NM_006768	ENSG00000089234	BRAP	BRAP2|IMP|RNF52	BRCA1 associated protein	protein-coding
354	chr17	4868094	4875221	+	0	NA	promoter-TSS (NM_004890)	promoter-TSS (NM_004890)	-525	NM_004890	9552	Hs.90436	NM_004890	ENSG00000091640	SPAG7	ACRP|FSA-1	sperm associated antigen 7	protein-coding
745	chr20	4060668	4067832	+	0	NA	Intergenic	L1MB5|LINE|L1	-65176	NM_175839	54498	Hs.433337	NM_175839	ENSG00000088826	SMOX	C20orf16|PAO|PAO-1|PAO1|PAOH|PAOH1|SMO	spermine oxidase	protein-coding
390	chr8	22050362	22053431	+	0	NA	intron (NR_033403, intron 10 of 19)	intron (NR_033403, intron 10 of 19)	29243	NM_001199	649	Hs.1274	NM_001199	ENSG00000168487	BMP1	OI13|PCOLC|PCP|PCP2|TLD	bone morphogenetic protein 1	protein-coding
272	chr2	200764875	200789114	+	0	NA	intron (NM_153689, intron 1 of 1)	intron (NM_153689, intron 1 of 1)	1015	NM_153689	205327	Hs.154494	NM_153689	ENSG00000178074	C2orf69	-	chromosome 2 open reading frame 69	protein-coding
412	chr19	4245689	4248093	+	0	NA	promoter-TSS (NM_018074)	promoter-TSS (NM_018074)	-176	NM_018074	55702	Hs.21811	NM_018074	ENSG00000105248	YJU2	CCDC94	YJU2 splicing factor homolog	protein-coding
704	chrX	134676374	134678118	+	0	NA	intron (NM_182540, intron 2 of 16)	L2|LINE|L2	-22647	NR_046740	100874118	Hs.602150	NR_046740	ENSG00000225235	INTS6L-AS1	DDX26B-AS1	INTS6L antisense RNA 1	ncRNA
409	chr15	63672190	63702844	+	0	NA	intron (NR_120375, intron 2 of 6)	CT-rich|Low_complexity|Low_complexity	5088	NR_120375	102723344	Hs.569500	NR_120375		LINC02568	-	long intergenic non-protein coding RNA 2568	ncRNA
645	chr19	45438603	45440113	+	0	NA	Intergenic	Intergenic	-6137	NR_037932	100533990	Hs.731599	NR_037932		APOC4-APOC2	-	APOC4-APOC2 readthrough (NMD candidate)	ncRNA
662	chr19	48215356	48218787	+	0	NA	intron (NM_014601, intron 1 of 5)	intron (NM_014601, intron 1 of 5)	470	NM_014601	30846	Hs.744963	NM_014601	ENSG00000024422	EHD2	PAST2	EH domain containing 2	protein-coding
845	chr17	47813240	47821704	+	0	NA	intron (NM_030802, intron 1 of 7)	intron (NM_030802, intron 1 of 7)	24046	NM_030802	81558	Hs.514308	NM_030802	ENSG00000121104	FAM117A	-	family with sequence similarity 117 member A	protein-coding
184	chr22	38905910	38913349	+	0	NA	Intergenic	AluSq|SINE|Alu	-7284	NM_006386	10521	Hs.528305	NM_006386	ENSG00000100201	DDX17	P72|RH70	DEAD-box helicase 17	protein-coding
18	chr11	66600758	66613231	+	0	NA	intron (NM_001302084, intron 13 of 14)	intron (NM_001302084, intron 13 of 14)	-3889	NM_001032279	9986	Hs.654972	NM_005133	ENSG00000173653	RCE1	FACE2|RCE1A|RCE1B	Ras converting CAAX endopeptidase 1	protein-coding
374	chr19	39825276	39827599	+	0	NA	intron (NM_004877, intron 1 of 6)	intron (NM_004877, intron 1 of 6)	289	NM_004877	9535	Hs.5210	NM_004877	ENSG00000130755	GMFG	GMF-GAMMA	glia maturation factor gamma	protein-coding
288	chr3	136466220	136474906	+	0	NA	intron (NM_005862, intron 1 of 33)	CpG	682	NM_005862	10274	Hs.412586	NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	stromal antigen 1	protein-coding
25	chr14	31548983	31551140	+	0	NA	intron (NM_007077, intron 5 of 5)	AluSq2|SINE|Alu	54212	NM_001254728	11154	Hs.293411	NM_007077	ENSG00000100478	AP4S1	AP47B|CLA20|CLAPS4|CPSQ6|SPG52	adaptor related protein complex 4 subunit sigma 1	protein-coding
694	chr16	31081767	31088137	+	0	NA	promoter-TSS (NM_001172668)	promoter-TSS (NM_001172668)	-129	NM_001172668	79759	Hs.102928	NM_024706	ENSG00000167394	ZNF668	-	zinc finger protein 668	protein-coding
420	chr18	19265298	19267409	+	0	NA	intron (NM_138340, intron 3 of 8)	intron (NM_138340, intron 3 of 8)	2882	NR_031565	100302135		NR_031565	ENSG00000221493	MIR320C1	MIR320C-1|MIRN320C1|hsa-mir-320c-1|mir-320c-1	microRNA 320c-1	ncRNA
208	chr19	14525399	14532529	+	0	NA	intron (NR_046366, intron 1 of 9)	intron (NR_046366, intron 1 of 9)	1231	NM_005804	10212	Hs.311609	NM_005804	ENSG00000123136	DDX39A	BAT1|BAT1L|DDX39|DDXL|URH49	DExD-box helicase 39A	protein-coding
5	chr11	63751694	63756217	+	0	NA	non-coding (NR_003089, exon 1 of 6)	non-coding (NR_003089, exon 1 of 6)	630	NM_017670	55611	Hs.473788	NM_017670	ENSG00000167770	OTUB1	HSPC263|OTB1|OTU1	OTU deubiquitinase, ubiquitin aldehyde binding 1	protein-coding
851	chr20	5749655	5752113	+	0	NA	intron (NM_001303477, intron 2 of 3)	Tigger7|DNA|TcMar-Tigger	19851	NM_001303478	149840	Hs.529340	NM_152504	ENSG00000171984	SHLD1	C20orf196|RINN3	shieldin complex subunit 1	protein-coding
423	chr22	19981720	19991320	+	0	NA	intron (NM_001670, intron 2 of 19)	intron (NM_001670, intron 2 of 19)	17789	NM_001670	421	Hs.713616	NM_001670	ENSG00000099889	ARVCF	-	ARVCF, delta catenin family member	protein-coding
575	chr2	15589245	15590680	+	0	NA	intron (NM_015909, intron 21 of 51)	intron (NM_015909, intron 21 of 51)	111510	NM_015909	51594	Hs.467759	NM_015909	ENSG00000151779	NBAS	ILFS2|NAG|SOPH	neuroblastoma amplified sequence	protein-coding
437	chr19	2334930	2337343	+	0	NA	intron (NM_001077238, intron 2 of 15)	(TG)n|Simple_repeat|Simple_repeat	7507	NM_152988	56928	Hs.744026	NM_152988	ENSG00000005206	SPPL2B	IMP-4|IMP4|PSH4|PSL1	signal peptide peptidase like 2B	protein-coding
154	chr6	166820146	166821866	+	0	NA	Intergenic	LTR40a|LTR|ERVL	-24505	NM_001270879	51660	Hs.172755	NM_016098	ENSG00000060762	MPC1	BRP44L|CGI-129|MPYCD|SLC54A1|dJ68L15.3	mitochondrial pyruvate carrier 1	protein-coding
65	chr16	30073544	30091890	+	0	NA	TTS (NM_001355563)	TTS (NM_001355563)	-4580	NM_001303503	5531	Hs.534338	NM_002720	ENSG00000149923	PPP4C	PP-X|PP4|PP4C|PPH3|PPP4|PPX	protein phosphatase 4 catalytic subunit	protein-coding
539	chr7	129597104	129600571	+	0	NA	Intergenic	Intergenic	-6037	NM_003344	7328	Hs.643548	NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
749	chr20	43964425	43969781	+	0	NA	intron (NM_002999, intron 1 of 4)	intron (NM_002999, intron 1 of 4)	9961	NM_002999	6385	Hs.632267	NM_002999	ENSG00000124145	SDC4	SYND4	syndecan 4	protein-coding
619	chrX	39939645	39980345	+	0	NA	intron (NM_001123384, intron 1 of 13)	CpG-27857	-3276	NM_017745	54880	Hs.659681	NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
97	chr1	32814250	32820444	+	0	NA	Intergenic	CpG	10497	NM_001167676	100128071	Hs.512763	NM_001167676	ENSG00000225828	FAM229A	-	family with sequence similarity 229 member A	protein-coding
726	chr6	34576283	34580459	+	0	NA	intron (NM_022758, intron 2 of 3)	Tigger4a|DNA|TcMar-Tigger	-54261	NM_012391	25803	Hs.485158	NM_012391	ENSG00000124664	SPDEF	PDEF|bA375E1.3	SAM pointed domain containing ETS transcription factor	protein-coding
756	chr4	15001283	15009015	+	0	NA	exon (NM_001177383, exon 1 of 11)	exon (NM_001177383, exon 1 of 11)	851	NM_182485	132864	Hs.656937	NM_182485	ENSG00000137449	CPEB2	CPE-BP2|CPEB-2|hCPEB-2	cytoplasmic polyadenylation element binding protein 2	protein-coding
170	chr16	58194337	58196305	+	0	NA	intron (NM_001896, intron 11 of 11)	intron (NM_001896, intron 11 of 11)	-31992	NR_136632	29105	Hs.532755	NM_013242	ENSG00000070761	CFAP20	BUG22|C16orf80|EVORF|GTL3|fSAP23	cilia and flagella associated protein 20	protein-coding
239	chr16	29669412	29680186	+	0	NA	intron (NM_003123, intron 1 of 1)	intron (NM_003123, intron 1 of 1)	259	NM_003123	6693	Hs.632188	NM_003123	ENSG00000197471	SPN	CD43|GALGP|GPL115|LSN	sialophorin	protein-coding
609	chr3	12700052	12708017	+	0	NA	intron (NM_001354691, intron 1 of 16)	intron (NM_001354691, intron 1 of 16)	973	NM_001354690	5894	Hs.159130	NM_002880	ENSG00000132155	RAF1	CMD1NN|CRAF|NS5|Raf-1|c-Raf	Raf-1 proto-oncogene, serine/threonine kinase	protein-coding
410	chr2	69901228	69903802	+	0	NA	intron (NM_001320698, intron 2 of 14)	intron (NM_001320698, intron 2 of 14)	-31538	NM_014911	22848	Hs.468878	NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
686	chr16	1693493	1698729	+	0	NA	intron (NM_020825, intron 5 of 19)	L1MC3|LINE|L1	31470	NM_020825	57585	Hs.603676	NM_020825	ENSG00000007545	CRAMP1	CRAMP1L|HN1L|TCE4	cramped chromatin regulator homolog 1	protein-coding
925	chr6	18267836	18271334	+	0	NA	Intergenic	Intergenic	-4786	NM_001134709	7913	Hs.484813	NM_003472	ENSG00000124795	DEK	D6S231E	DEK proto-oncogene	protein-coding
542	chr22	40858056	40861627	+	0	NA	promoter-TSS (NM_001282660)	promoter-TSS (NM_001282660)	-397	NM_001282660	57591	Hs.654688	NM_020831	ENSG00000196588	MKL1	BSAC|MAL|MKL|MRTF-A	megakaryoblastic leukemia (translocation) 1	protein-coding
242	chr9	100320964	100336890	+	0	NA	intron (NM_001166116, intron 7 of 9)	AluSz|SINE|Alu	65006	NM_003275	7111	Hs.404289	NM_003275	ENSG00000136842	TMOD1	D9S57E|ETMOD|TMOD	tropomodulin 1	protein-coding
663	chr9	3533604	3537300	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-9451	NM_134428	5991	Hs.136829	NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
592	chr19	18571644	18573925	+	0	NA	intron (NM_006532, intron 4 of 11)	intron (NM_006532, intron 4 of 11)	-23673	NR_045573	51477	Hs.405873	NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
924	chr13	49104130	49110131	+	0	NA	intron (NM_001352426, intron 1 of 12)	CpG	262	NM_001268	1102	Hs.652712	NM_001268	ENSG00000136161	RCBTB2	CHC1L|RLG	RCC1 and BTB domain containing protein 2	protein-coding
734	chr14	23334025	23335382	+	0	NA	Intergenic	LTR33A|LTR|ERVL	-6223	NM_001329226	26020	Hs.525232	NM_014045	ENSG00000197324	LRP10	LRP-10|LRP9|MST087|MSTP087	LDL receptor related protein 10	protein-coding
347	chr4	2564343	2580544	+	0	NA	Intergenic	Intergenic	-54716	NR_046335	8603	Hs.652364	NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
944	chr1	162438607	162442633	+	0	NA	Intergenic	L1MB3|LINE|L1	-26344	NM_001184763	127933	Hs.127310	NM_144624	ENSG00000152332	UHMK1	KIS|KIST|P-CIP2	U2AF homology motif kinase 1	protein-coding
569	chr6	161588361	161593297	+	0	NA	intron (NM_020133, intron 2 of 8)	MLT2F|LTR|ERVL	-7815	NR_024277	79992	Hs.664873	NM_024929	ENSG00000279355	AGPAT4-IT1	C6orf59|NCRNA00241	AGPAT4 intronic transcript 1	ncRNA
222	chr5	132368057	132370101	+	0	NA	Intergenic	MER92C|LTR|ERV1	-6783	NM_017665	54819	Hs.29700	NM_017665	ENSG00000155329	ZCCHC10	-	zinc finger CCHC-type containing 10	protein-coding
297	chr2	191242105	191247013	+	0	NA	Intergenic	Intergenic	-28522	NM_017694	54842	Hs.418581	NM_017694	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
953	chr2	20115261	20117381	+	0	NA	intron (NM_001006657, intron 26 of 27)	L1PA7|LINE|L1	-14574	NM_001008237	130502	Hs.591547	NM_001008237	ENSG00000183891	TTC32	-	tetratricopeptide repeat domain 32	protein-coding
188	chr4	151958308	151960990	+	0	NA	Intergenic	Intergenic	-23000	NM_006726	987	Hs.480938	NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA	LPS responsive beige-like anchor protein	protein-coding
102	chr3	128117697	128124074	+	0	NA	intron (NM_021937, intron 6 of 6)	intron (NM_021937, intron 6 of 6)	-61552	NR_037890	285224	Hs.683815	NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	ncRNA
838	chr13	52484564	52506101	+	0	NA	Intergenic	Intergenic	59248	NM_031290	83446	Hs.120573	NM_031290	ENSG00000123171	CCDC70	-	coiled-coil domain containing 70	protein-coding
1000	chr16	20954349	20958874	+	0	NA	intron (NM_017539, intron 57 of 61)	MER41B|LTR|ERV1	44185	NM_001302835	57149	Hs.745012	NM_020424	ENSG00000102897	LYRM1	A211C6.1	LYR motif containing 1	protein-coding
598	chr7	104582747	104587314	+	0	NA	Intergenic	Intergenic	-17938	NR_027374	723809	Hs.124316	NR_027374	ENSG00000225329	LHFPL3-AS2	-	LHFPL3 antisense RNA 2	ncRNA
646	chr9	127700916	127706640	+	0	NA	promoter-TSS (NM_002077)	promoter-TSS (NM_002077)	-392	NM_002077	2800	Hs.59504	NM_002077	ENSG00000136935	GOLGA1	golgin-97	golgin A1	protein-coding
714	chr10	99472274	99475640	+	0	NA	exon (NM_031484, exon 1 of 2)	exon (NM_031484, exon 1 of 2)	492	NM_031484	83742	Hs.744073	NM_031484	ENSG00000155254	MARVELD1	GB14|MARVD1|MRVLDC1|bA548K23.8	MARVEL domain containing 1	protein-coding
149	chr7	101329868	101333895	+	0	NA	Intergenic	CpG	-59305	NM_138403	93408	Hs.247831	NM_138403	ENSG00000106436	MYL10	MYLC2PL|PLRLC	myosin light chain 10	protein-coding
363	chr13	28709384	28719419	+	0	NA	intron (NM_175854, intron 1 of 18)	intron (NM_175854, intron 1 of 18)	-1090	NR_029383	100288730	Hs.123191	NR_029383		PAN3-AS1	-	PAN3 antisense RNA 1	ncRNA
722	chr8	117772557	117781733	+	0	NA	Intergenic	Intergenic	-1597	NM_032334	84294	Hs.86970	NM_032334	ENSG00000147679	UTP23	C8orf53	UTP23, small subunit processome component	protein-coding
969	chr13	80039695	80043412	+	0	NA	Intergenic	MIR|SINE|MIR	-13706	NM_001161407	54602	Hs.525093	NM_019080	ENSG00000102471	NDFIP2	N4WBP5A	Nedd4 family interacting protein 2	protein-coding
486	chr17	71220342	71230607	+	0	NA	intron (NM_001098832, intron 1 of 3)	intron (NM_001098832, intron 1 of 3)	-1618	NM_001289412	84923	Hs.741276	NM_032837	ENSG00000133193	FAM104A	-	family with sequence similarity 104 member A	protein-coding
268	chr22	38897565	38905099	+	0	NA	intron (NM_001098504, intron 1 of 12)	intron (NM_001098504, intron 1 of 12)	1013	NM_001098504	10521	Hs.528305	NM_006386	ENSG00000100201	DDX17	P72|RH70	DEAD-box helicase 17	protein-coding
670	chr16	20921217	20931985	+	0	NA	intron (NM_001302836, intron 3 of 5)	AluYc|SINE|Alu	14175	NM_001302835	57149	Hs.745012	NM_020424	ENSG00000102897	LYRM1	A211C6.1	LYR motif containing 1	protein-coding
416	chr1	226104649	226121228	+	0	NA	promoter-TSS (NM_013328)	promoter-TSS (NM_013328)	-898	NM_001271681	29920	Hs.654718	NM_013328	ENSG00000143811	PYCR2	HLD10|P5CR2	pyrroline-5-carboxylate reductase 2	protein-coding
870	chr7	101537830	101572171	+	0	NA	intron (NM_181552, intron 1 of 23)	intron (NM_181552, intron 1 of 23)	94118	NM_181552	1523	Hs.191482	NM_001913	ENSG00000257923	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75	cut like homeobox 1	protein-coding
126	chr3	49169177	49172416	+	0	NA	promoter-TSS (NM_002292)	promoter-TSS (NM_002292)	-197	NM_002292	3913	Hs.439726	NM_002292	ENSG00000172037	LAMB2	LAMS|NPHS5	laminin subunit beta 2	protein-coding
961	chr5	141291356	141309663	+	0	NA	Intergenic	Intergenic	-2876	NM_001142603	9812	Hs.210532	NM_014773	ENSG00000081791	DELE1	DELE|KIAA0141	DAP3 binding cell death enhancer 1	protein-coding
235	chr19	49462848	49475798	+	0	NA	intron (NM_000146, intron 2 of 3)	CpG-14126	757	NM_000146	2512	Hs.433670	NM_000146	ENSG00000087086	FTL	LFTD|NBIA3	ferritin light chain	protein-coding
342	chr6	34827299	34828891	+	0	NA	intron (NM_017754, intron 14 of 20)	intron (NM_017754, intron 14 of 20)	27753	NM_001270488	6882	Hs.112444	NM_005643	ENSG00000064995	TAF11	MGC:15243|PRO2134|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding
267	chr17	17179612	17188645	+	0	NA	promoter-TSS (NM_001199125)	promoter-TSS (NM_001199125)	-116	NM_001199125	8533	Hs.6076	NM_003653	ENSG00000141030	COPS3	CSN3|SGN3	COP9 signalosome subunit 3	protein-coding
678	chr5	134606301	134609902	+	0	NA	intron (NM_001277348, intron 3 of 5)	intron (NM_001277348, intron 3 of 5)	-24234	NR_037895	340073	Hs.434422	NR_037895	ENSG00000249647	C5orf66-AS2	-	C5orf66 antisense RNA 2	ncRNA
921	chr12	110715451	110724833	+	0	NA	intron (NM_170665, intron 1 of 19)	intron (NM_170665, intron 1 of 19)	1110	NM_170665	488	Hs.506759	NM_001681	ENSG00000174437	ATP2A2	ATP2B|DAR|DD|SERCA2	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2	protein-coding
767	chr3	137931389	137933561	+	0	NA	intron (NM_014154, intron 3 of 12)	intron (NM_014154, intron 3 of 12)	26385	NM_014154	25852	Hs.744868	NM_014154	ENSG00000114098	ARMC8	GID5|HSPC056|S863-2|VID28	armadillo repeat containing 8	protein-coding
555	chr21	37681431	37716488	+	0	NA	intron (NM_001320445, intron 1 of 15)	L1MB2|LINE|L1	6472	NM_015358	23515	Hs.421150	NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
396	chr15	41803141	41808158	+	0	NA	intron (NM_206961, intron 1 of 18)	intron (NM_206961, intron 1 of 18)	436	NM_002344	4058	Hs.434481	NM_002344	ENSG00000062524	LTK	TYK1	leukocyte receptor tyrosine kinase	protein-coding
444	chr2	171596121	171605584	+	0	NA	intron (NR_110185, intron 1 of 5)	intron (NR_110185, intron 1 of 5)	-26340	NM_001290031	285141	Hs.443729	NM_001289947	ENSG00000204334	ERICH2	-	glutamate rich 2	protein-coding
369	chr19	49910711	49914299	+	0	NA	exon (NM_144688, exon 14 of 20)	exon (NM_144688, exon 14 of 20)	14193	NM_178449	113091	Hs.339845	NM_178449	ENSG00000142538	PTH2	TIP39	parathyroid hormone 2	protein-coding
103	chr4	109085424	109091614	+	0	NA	promoter-TSS (NM_001166119)	promoter-TSS (NM_001166119)	-162	NR_029374	641518	Hs.535760	NR_029373	ENSG00000232021	LEF1-AS1	LEF1NAT	LEF1 antisense RNA 1	ncRNA
143	chr19	1477239	1483329	+	0	NA	Intergenic	AluY|SINE|Alu	-1056	NM_152482	148223	Hs.532840	NM_152482	ENSG00000119559	C19orf25	-	chromosome 19 open reading frame 25	protein-coding
421	chr5	86603229	86604879	+	0	NA	intron (NM_022650, intron 1 of 24)	L1ME3A|LINE|L1	15391	NR_130929	644285	Hs.709256	NR_130929		LOC644285	-	uncharacterized LOC644285	ncRNA
964	chr3	196694585	196699014	+	0	NA	Intergenic	CpG-19308	-1057	NM_025163	80235	Hs.518403	NM_025163	ENSG00000119227	PIGZ	GPI-MT-IV|PIG-Z|SMP3	phosphatidylinositol glycan anchor biosynthesis class Z	protein-coding
509	chr3	47176500	47178745	+	0	NA	intron (NM_014159, intron 1 of 20)	L2a|LINE|L2	27845	NM_001349370	29072	Hs.517941	NM_012271	ENSG00000181555	SETD2	HBP231|HIF-1|HIP-1|HSPC069|HYPB|KMT3A|LLS|SET2|p231HBP	SET domain containing 2	protein-coding
544	chr19	17344375	17348456	+	0	NA	exon (NM_005234, exon 3 of 4)	exon (NM_005234, exon 3 of 4)	9402	NM_024578	79629	Hs.422676	NM_024578	ENSG00000099330	OCEL1	FWP009|S863-9	occludin/ELL domain containing 1	protein-coding
634	chr6	17905466	17910417	+	0	NA	intron (NM_022113, intron 2 of 38)	L2a|LINE|L2	79913	NM_001105567	63971	Hs.94499	NM_022113	ENSG00000137177	KIF13A	RBKIN|bA500C11.2	kinesin family member 13A	protein-coding
815	chr11	12887711	12894850	+	0	NA	intron (NM_021961, intron 5 of 12)	intron (NM_021961, intron 5 of 12)	119815	NR_038904	100506305	Hs.153408	NR_038904	ENSG00000251381	LINC00958	-	long intergenic non-protein coding RNA 958	ncRNA
757	chr1	156879024	156886628	+	0	NA	intron (NM_001080471, intron 18 of 22)	intron (NM_001080471, intron 18 of 22)	-7598	NM_144702	149499	Hs.491734	NM_144702	ENSG00000160838	LRRC71	C1orf92	leucine rich repeat containing 71	protein-coding
903	chr10	102026011	102029088	+	0	NA	promoter-TSS (NM_018294)	promoter-TSS (NM_018294)	-111	NM_001303406	55280	Hs.215502	NM_018294	ENSG00000095485	CWF19L1	C19L1|SCAR17|hDrn1	CWF19 like 1, cell cycle control (S. pombe)	protein-coding
995	chr15	64678237	64681377	+	0	NA	promoter-TSS (NR_109934)	promoter-TSS (NR_109934)	79	NR_109934	9768	Hs.81892	NM_014736	ENSG00000166803	PCLAF	KIAA0101|L5|NS5ATP9|OEATC|OEATC-1|OEATC1|PAF|PAF15|p15(PAF)|p15/PAF|p15PAF	PCNA clamp associated factor	protein-coding
576	chr1	27325359	27365109	+	0	NA	Intergenic	Intergenic	-5901	NM_052943	115572	Hs.632378	NM_052943	ENSG00000158246	TENT5B	FAM46B	terminal nucleotidyltransferase 5B	protein-coding
43	chr17	8229066	8230780	+	0	NA	Intergenic	Intergenic	-13235	NM_001319953	146852	Hs.186045	NM_153007	ENSG00000184650	ODF4	CT134|CT136|OPPO1	outer dense fiber of sperm tails 4	protein-coding
228	chr2	171678747	171681324	+	0	NA	intron (NM_000817, intron 3 of 16)	CpG-15697	6835	NM_013445	2571	Hs.420036	NM_000817	ENSG00000128683	GAD1	CPSQ1|GAD|SCP	glutamate decarboxylase 1	protein-coding
399	chr22	22838649	22849439	+	0	NA	intron (NM_080764, intron 3 of 3)	intron (NM_080764, intron 3 of 3)	19461	NR_130642	140883	Hs.43834	NM_080764	ENSG00000275004	ZNF280B	5'OY11.1|D87009.C22.3|SUHW2|ZNF279|ZNF632	zinc finger protein 280B	protein-coding
29	chr1	19651029	19653743	+	0	NA	intron (NM_001287531, intron 4 of 7)	L2b|LINE|L2	13646	NM_017765	54896	Hs.647620	NM_017765	ENSG00000040487	PQLC2	-	PQ loop repeat containing 2	protein-coding
178	chr7	44798755	44803515	+	0	NA	exon (NM_001300959, exon 9 of 18)	exon (NM_001300959, exon 9 of 18)	5348	NM_174929	83637	Hs.77978	NM_031449	ENSG00000122515	ZMIZ2	NET27|TRAFIP20|ZIMP7|hZIMP7	zinc finger MIZ-type containing 2	protein-coding
502	chr16	85422860	85425886	+	0	NA	Intergenic	Intergenic	-84442	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
716	chr13	99918614	99923315	+	0	NA	intron (NM_001144072, intron 4 of 8)	intron (NM_001144072, intron 4 of 8)	-10282	NM_001098200	2841	Hs.741589	NM_005292	ENSG00000125245	GPR18	-	G protein-coupled receptor 18	protein-coding
271	chr19	51338265	51341227	+	0	NA	intron (NR_131205, intron 2 of 2)	intron (NR_131205, intron 2 of 2)	-4967	NR_102274	55554	Hs.567535	NM_017509	ENSG00000174562	KLK15	ACO|HSRNASPH	kallikrein related peptidase 15	protein-coding
183	chrX	15832994	15834783	+	0	NA	exon (NM_005089, exon 8 of 11)	exon (NM_005089, exon 8 of 11)	25314	NM_005089	8233	Hs.171909	NM_005089	ENSG00000169249	ZRSR2	U2AF1-RS2|U2AF1L2|U2AF1RS2|URP|ZC3H22	zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2	protein-coding
603	chrX	48893768	48903485	+	0	NA	intron (NM_006521, intron 1 of 9)	AluSc|SINE|Alu	2417	NM_001282142	7030	Hs.730740	NM_006521	ENSG00000068323	TFE3	RCCP2|RCCX1|TFEA|bHLHe33	transcription factor binding to IGHM enhancer 3	protein-coding
193	chr1	160975401	160993750	+	0	NA	intron (NM_001348091, intron 1 of 8)	AluSx|SINE|Alu	6558	NM_016946	50848	Hs.517293	NM_016946	ENSG00000158769	F11R	CD321|JAM|JAM1|JAMA|JCAM|KAT|PAM-1	F11 receptor	protein-coding
180	chr19	41729732	41734201	+	0	NA	promoter-TSS (NM_001278599)	promoter-TSS (NM_001278599)	-694	NM_001278599	558	Hs.590970	NM_001699	ENSG00000167601	AXL	ARK|JTK11|Tyro7|UFO	AXL receptor tyrosine kinase	protein-coding
591	chr15	91350733	91354791	+	0	NA	intron (NM_000057, intron 20 of 21)	MIR3|SINE|MIR	-59060	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin, paired basic amino acid cleaving enzyme	protein-coding
153	chr8	126192152	126195492	+	0	NA	intron (NR_146192, intron 5 of 5)	intron (NR_146192, intron 5 of 5)	89757	NM_173685	286053	Hs.388297	NM_173685	ENSG00000156831	NSMCE2	C8orf36|MMS21|NSE2|ZMIZ7	NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase	protein-coding
839	chrX	109471239	109474168	+	0	NA	intron (NM_001025580, intron 1 of 4)	intron (NM_001025580, intron 1 of 4)	-4415	NR_004379	692226		NR_004379	ENSG00000208883	SNORD96B	U96b	small nucleolar RNA, C/D box 96B	snoRNA
536	chr12	122099558	122104738	+	0	NA	intron (NM_173855, intron 1 of 5)	MLT1K|LTR|ERVL-MaLR	5412	NM_173855	283385	Hs.434154	NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding
755	chr19	18449533	18454731	+	0	NA	intron (NM_001329477, intron 1 of 3)	intron (NM_001329477, intron 1 of 3)	735	NM_001329478	54858	Hs.131776	NM_017712	ENSG00000130517	PGPEP1	PAP-I|PGI|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding
563	chr3	47659713	47661903	+	0	NA	intron (NM_003074, intron 25 of 27)	L2c|LINE|L2	-39078	NM_001206942	10675	Hs.45127	NM_006574	ENSG00000114646	CSPG5	NGC	chondroitin sulfate proteoglycan 5	protein-coding
557	chr6	90059811	90064549	+	0	NA	intron (NM_016021, intron 1 of 7)	CpG	439	NM_016021	51465	Hs.163776	NM_016021	ENSG00000198833	UBE2J1	CGI-76|HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|UBC6E|Ubc6p	ubiquitin conjugating enzyme E2 J1	protein-coding
747	chr7	139974030	139976247	+	0	NA	Intergenic	MER117|DNA|hAT-Charlie	98077	NR_024451	100134229	Hs.634333	NR_024451	ENSG00000260231	KDM7A-DT	JHDM1D-AS1	KDM7A divergent transcript	ncRNA
649	chr16	90058194	90066374	+	0	NA	non-coding (NR_003226, exon 11 of 11)	non-coding (NR_003226, exon 11 of 11)	14245	NM_024043	79007	Hs.301394	NM_024043	ENSG00000003249	DBNDD1	-	dysbindin domain containing 1	protein-coding
275	chr1	155937905	155955611	+	0	NA	intron (NM_001350112, intron 1 of 21)	intron (NM_001350112, intron 1 of 21)	1208	NM_004723	9181	Hs.743352	NM_004723	ENSG00000116584	ARHGEF2	GEF|GEF-H1|GEFH1|LFP40|NEDMHM|P40	Rho/Rac guanine nucleotide exchange factor 2	protein-coding
590	chr5	61579826	61584553	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-19800	NM_004520	3796	Hs.558351	NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
147	chr22	19626660	19635061	+	0	NA	Intergenic	AluJb|SINE|Alu	-71127	NM_002688	5413	Hs.728762	NM_002688	ENSG00000184702	SEPT5	CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1	septin 5	protein-coding
790	chr22	23374036	23381581	+	0	NA	Intergenic	MER50B|LTR|ERV1	-34732	NM_002073	2781	Hs.584760	NM_002073	ENSG00000128266	GNAZ	gz-alpha	G protein subunit alpha z	protein-coding
671	chr16	2033100	2037902	+	0	NA	intron (NM_005262, intron 2 of 2)	intron (NM_005262, intron 2 of 2)	1351	NM_005262	2671	Hs.27184	NM_005262	ENSG00000127554	GFER	ALR|ERV1|HERV1|HPO|HPO1|HPO2|HSS	growth factor, augmenter of liver regeneration	protein-coding
466	chr17	61648498	61650861	+	0	NA	intron (NM_005828, intron 1 of 7)	MIR|SINE|MIR	21883	NM_005828	10238	Hs.410596	NM_005828	ENSG00000136485	DCAF7	AN11|HAN11|SWAN-1|WDR68	DDB1 and CUL4 associated factor 7	protein-coding
26	chr5	148808087	148812048	+	0	NA	promoter-TSS (NR_029686)	promoter-TSS (NR_029686)	-142	NR_029686	406937		NR_029686	ENSG00000276365	MIR145	MIRN145|miR-145|miRNA145	microRNA 145	ncRNA
741	chr10	99638303	99639927	+	0	NA	TTS (NM_001206528)	TTS (NM_001206528)	29120	NM_001010917	401647	Hs.567524	NM_001010917	ENSG00000155265	GOLGA7B	C10orf132|C10orf133|bA451M19.3|bA459F3.4	golgin A7 family member B	protein-coding
273	chr15	23084613	23088309	+	0	NA	promoter-TSS (NM_144599)	promoter-TSS (NM_144599)	-25	NM_144599	123606	Hs.511797	NM_144599	ENSG00000170113	NIPA1	FSP3|SLC57A1|SPG6	NIPA magnesium transporter 1	protein-coding
715	chr19	50062808	50064757	+	0	NA	intron (NM_001270960, intron 2 of 8)	intron (NM_001270960, intron 2 of 8)	20047	NM_015953	51070	Hs.7236	NM_015953	ENSG00000142546	NOSIP	CGI-25	nitric oxide synthase interacting protein	protein-coding
438	chr2	9981548	9987238	+	0	NA	intron (NM_001318976, intron 1 of 14)	AluJo|SINE|Alu	822	NM_001318976	9014	Hs.584833	NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding
68	chr1	39872671	39876328	+	0	NA	promoter-TSS (NM_015038)	promoter-TSS (NM_015038)	-677	NM_015038	643314	Hs.658760	NM_015038	ENSG00000127603	KIAA0754	-	KIAA0754	protein-coding
406	chr19	49862740	49869247	+	0	NA	promoter-TSS (NM_003598)	promoter-TSS (NM_003598)	-279	NM_001256658	8463	Hs.515534	NM_003598	ENSG00000074219	TEAD2	ETF|TEAD-2|TEF-4|TEF4	TEA domain transcription factor 2	protein-coding
510	chr19	39217665	39221487	+	0	NA	intron (NM_001322033, intron 19 of 20)	intron (NM_001322033, intron 19 of 20)	15538	NM_144691	147968	Hs.731775	NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
653	chr3	43621785	43630310	+	0	NA	intron (NM_001204833, intron 2 of 10)	LTR18B|LTR|ERVL	37371	NM_001346466	55129	Hs.656657	NM_018075	ENSG00000160746	ANO10	SCAR10|TMEM16K	anoctamin 10	protein-coding
841	chr4	48635512	48638850	+	0	NA	intron (NM_015030, intron 3 of 63)	L2c|LINE|L2	144912	NM_175619	326340	Hs.276457	NM_175619	ENSG00000182223	ZAR1	Z3CXXC6	zygote arrest 1	protein-coding
774	chr16	25009287	25012171	+	0	NA	intron (NM_001006634, intron 1 of 19)	AluJr|SINE|Alu	15970	NM_001006634	55114	Hs.373793	NM_018054	ENSG00000140750	ARHGAP17	MST066|MST110|MSTP038|MSTP066|MSTP110|NADRIN|PP367|PP4534|RICH-1|RICH1|WBP15	Rho GTPase activating protein 17	protein-coding
76	chr18	54302528	54308273	+	0	NA	intron (NR_024546, intron 1 of 8)	intron (NR_024546, intron 1 of 8)	520	NR_024546	9352	Hs.114412	NM_004786	ENSG00000091164	TXNL1	HEL-S-114|TRP32|TXL-1|TXNL|Txl	thioredoxin like 1	protein-coding
64	chr20	48722418	48737147	+	0	NA	promoter-TSS (NM_001282577)	promoter-TSS (NM_001282577)	-47	NM_001282576	7335	Hs.420529	NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin conjugating enzyme E2 V1	protein-coding
720	chr21	38331040	38341474	+	0	NA	intron (NM_000411, intron 1 of 11)	AluSx|SINE|Alu	-1599	NM_001352518	3141	Hs.371350	NM_000411	ENSG00000159267	HLCS	HCS	holocarboxylase synthetase	protein-coding
80	chr17	46553962	46557180	+	0	NA	Intergenic	AluSx1|SINE|Alu	33376	NR_110804	101927166	Hs.149244	NR_110804		LOC101927166	-	uncharacterized LOC101927166	ncRNA
556	chr11	95437989	95442505	+	0	NA	Intergenic	Intergenic	82707	NM_144664	143684	Hs.288304	NM_144664	ENSG00000077458	FAM76B	-	family with sequence similarity 76 member B	protein-coding
66	chr6	53478700	53483407	+	0	NA	Intergenic	Intergenic	-12125	NR_125841	101927171	Hs.334005	NR_125841	ENSG00000235899	LINC01564	TCONS_00011314|XLOC_005327	long intergenic non-protein coding RNA 1564	ncRNA
913	chr2	73449142	73478018	+	0	NA	intron (NM_001166285, intron 2 of 12)	AluSg|SINE|Alu	2216	NR_029403	10574	Hs.368149	NM_006429	ENSG00000135624	CCT7	CCTETA|CCTH|NIP7-1|TCP1ETA	chaperonin containing TCP1 subunit 7	protein-coding
345	chr21	36569732	36587586	+	0	NA	Intergenic	Intergenic	-157064	NM_001754	861	Hs.149261	NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	runt related transcription factor 1	protein-coding
189	chr17	44221121	44242383	+	0	NA	intron (NM_015443, intron 2 of 14)	AluJb|SINE|Alu	38414	NM_001193466	284058	Hs.648744	NM_015443	ENSG00000120071	KANSL1	CENP-36|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
348	chr6	42529808	42539502	+	0	NA	intron (NM_001184801, intron 1 of 11)	intron (NM_001184801, intron 1 of 11)	2895	NM_015255	23304	Hs.529925	NM_015255	ENSG00000024048	UBR2	C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
680	chr14	37634678	37646072	+	0	NA	promoter-TSS (NR_033240)	promoter-TSS (NR_033240)	-856	NR_033240	100129794	Hs.601579	NR_033240	ENSG00000258708	SLC25A21-AS1	-	SLC25A21 antisense RNA 1	ncRNA
124	chr16	58032419	58037522	+	0	NA	promoter-TSS (NM_024598)	promoter-TSS (NM_024598)	-307	NM_001330569	79650	Hs.408702	NM_024598	ENSG00000103005	USB1	C16orf57|HVSL1|Mpn1|PN|hUsb1	U6 snRNA biogenesis phosphodiesterase 1	protein-coding
280	chrX	122932922	122934933	+	0	NA	Intergenic	Intergenic	-59735	NM_001204401	331	Hs.356076	NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
371	chr10	105152432	105159508	+	0	NA	promoter-TSS (NM_014976)	promoter-TSS (NM_014976)	300	NM_032747	84833	Hs.500921	NM_032747	ENSG00000173915	ATP5MD	DAPIT|HCVFTP2|USMG5|bA792D24.4	ATP synthase membrane subunit DAPIT	protein-coding
156	chr16	75735345	75738120	+	0	NA	Intergenic	Intergenic	-1375	NM_001351308	100033411		NM_001351307	ENSG00000282757	DUXB	-	double homeobox B	protein-coding
31	chr19	52690874	52696337	+	0	NA	intron (NR_033500, intron 1 of 13)	CpG	550	NM_014225	5518	Hs.467192	NM_014225	ENSG00000105568	PPP2R1A	MRD36|PP2A-Aalpha|PP2AA|PP2AAALPHA|PR65A	protein phosphatase 2 scaffold subunit Aalpha	protein-coding
524	chr19	19141653	19147108	+	0	NA	promoter-TSS (NM_033415)	promoter-TSS (NM_033415)	0	NM_014884	10147	Hs.77876	NM_014884	ENSG00000064607	SUGP2	SFRS14|SRFS14	SURP and G-patch domain containing 2	protein-coding
721	chr16	23887528	23892278	+	0	NA	intron (NM_212535, intron 2 of 16)	MER82|DNA|TcMar-Tigger	42603	NM_212535	5579	Hs.460355	NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
522	chr12	113657983	113662422	+	0	NA	intron (NM_001351346, intron 1 of 28)	MER20|DNA|hAT-Charlie	959	NM_001143819	53373	Hs.524763	NM_017901	ENSG00000186815	TPCN1	TPC1	two pore segment channel 1	protein-coding
111	chr21	45482812	45486002	+	0	NA	intron (NM_003274, intron 7 of 22)	Charlie4z|DNA|hAT-Charlie	-9798	NM_001351709	7109	Hs.126221	NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|TMEM1|TRS130|TRS30	trafficking protein particle complex 10	protein-coding
493	chr5	134631425	134634546	+	0	NA	intron (NM_001277348, intron 3 of 5)	intron (NM_001277348, intron 3 of 5)	-49118	NR_037895	340073	Hs.434422	NR_037895	ENSG00000249647	C5orf66-AS2	-	C5orf66 antisense RNA 2	ncRNA
202	chr17	73184215	73186344	+	0	NA	Intergenic	AluSz6|SINE|Alu	-6181	NM_006937	6613	Hs.380973	NM_006937	ENSG00000188612	SUMO2	HSMT3|SMT3B|SMT3H2|SUMO3|Smt3A	small ubiquitin-like modifier 2	protein-coding
698	chr19	19311671	19315897	+	0	NA	intron (NM_001300945, intron 1 of 5)	intron (NM_001300945, intron 1 of 5)	454	NM_176880	126382	Hs.708153	NM_176880	ENSG00000184162	NR2C2AP	TRA16	nuclear receptor 2C2 associated protein	protein-coding
468	chr19	12842713	12850633	+	0	NA	Intergenic	Intergenic	-1084	NM_001329738	79002	Hs.515155	NM_024038	ENSG00000123144	TRIR	C19orf43|TERCIR|fSAP18	telomerase RNA component interacting RNase	protein-coding
456	chr4	39182409	39185678	+	0	NA	promoter-TSS (NM_025132)	promoter-TSS (NM_025132)	19	NM_001317924	57728	Hs.438482	NM_025132	ENSG00000157796	WDR19	ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5	WD repeat domain 19	protein-coding
442	chr14	100584456	100592400	+	0	NA	intron (NM_001330221, intron 3 of 13)	intron (NM_001330221, intron 3 of 13)	12436	NR_029888	442909		NR_029888	ENSG00000199082	MIR342	MIRN342|hsa-mir-342	microRNA 342	ncRNA
818	chr3	101236097	101238996	+	0	NA	promoter-TSS (NR_036433)	promoter-TSS (NR_036433)	-165	NR_036433	131909	Hs.518125	NR_036433		FAM172BP	FAM172B	family with sequence similarity 172 member B, pseudogene	pseudo
926	chr17	56590443	56598022	+	0	NA	intron (NM_004687, intron 1 of 18)	intron (NM_004687, intron 1 of 18)	1019	NM_004687	9110	Hs.514373	NM_004687	ENSG00000108389	MTMR4	FYVE-DSP2|ZFYVE11	myotubularin related protein 4	protein-coding
784	chr14	57045046	57049545	+	0	NA	intron (NM_017799, intron 1 of 15)	L2a|LINE|L2	784	NM_017799	54916	Hs.497253	NM_017799	ENSG00000070269	TMEM260	C14orf101|SHDRA	transmembrane protein 260	protein-coding
808	chr7	45192350	45194197	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-4094	NM_005856	10268	Hs.25691	NM_005856	ENSG00000122679	RAMP3	-	receptor activity modifying protein 3	protein-coding
957	chr16	85402694	85419375	+	0	NA	Intergenic	Intergenic	-71103	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
800	chr19	41425964	41427912	+	0	NA	Intergenic	Intergenic	-3232	NR_001278	1556	Hs.529117	NR_001278	ENSG00000256612	CYP2B7P	CYP2B|CYP2B7|CYP2B7P1	cytochrome P450 family 2 subfamily B member 7, pseudogene	pseudo
373	chr20	35484169	35494491	+	0	NA	intron (NM_080627, intron 1 of 14)	intron (NM_080627, intron 1 of 14)	-1054	NM_199181	140710	Hs.460807	NM_080627	ENSG00000149639	SOGA1	C20orf117|KIAA0889|SOGA	suppressor of glucose, autophagy associated 1	protein-coding
700	chr5	85911159	85917870	+	0	NA	intron (NM_001867, intron 1 of 2)	intron (NM_001867, intron 1 of 2)	730	NM_001867	1350	Hs.430075	NM_001867	ENSG00000127184	COX7C	-	cytochrome c oxidase subunit 7C	protein-coding
943	chr12	129306382	129310783	+	0	NA	promoter-TSS (NM_145648)	promoter-TSS (NM_145648)	-41	NM_145648	121260	Hs.507260	NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
973	chr1	185138125	185140634	+	0	NA	intron (NM_017673, intron 4 of 18)	intron (NM_017673, intron 4 of 18)	13088	NM_017673	54823	Hs.134183	NM_017673	ENSG00000116668	SWT1	C1orf26|HsSwt1	SWT1, RNA endoribonuclease homolog	protein-coding
951	chr12	52402725	52405924	+	0	NA	promoter-TSS (NM_001271856)	promoter-TSS (NM_001271856)	48	NM_001271856	160622	Hs.407202	NM_181711	ENSG00000161835	GRASP	TAMALIN	general receptor for phosphoinositides 1 associated scaffold protein	protein-coding
229	chr13	96588956	96592147	+	0	NA	intron (NM_020121, intron 16 of 38)	L2c|LINE|L2	115185	NM_020121	55757	Hs.193226	NM_020121	ENSG00000102595	UGGT2	HUGT2|UGCGL2|UGT2	UDP-glucose glycoprotein glucosyltransferase 2	protein-coding
370	chr22	20896173	20915206	+	0	NA	intron (NM_001003891, intron 2 of 17)	intron (NM_001003891, intron 2 of 17)	43354	NM_001293237	51586	Hs.517421	NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
232	chr6	17984741	17990146	+	0	NA	intron (NM_022113, intron 1 of 38)	CpG	411	NM_001105567	63971	Hs.94499	NM_022113	ENSG00000137177	KIF13A	RBKIN|bA500C11.2	kinesin family member 13A	protein-coding
83	chr1	228325619	228338957	+	0	NA	promoter-TSS (NM_001159391)	promoter-TSS (NM_001159391)	-116	NM_001159391	2987	Hs.376933	NM_000858	ENSG00000143774	GUK1	GMK	guanylate kinase 1	protein-coding
882	chr14	74350427	74357491	+	0	NA	intron (NM_021188, intron 1 of 11)	intron (NM_021188, intron 1 of 11)	641	NM_001242928	57862	Hs.270869	NM_021188	ENSG00000119725	ZNF410	APA-1|APA1	zinc finger protein 410	protein-coding
908	chr14	39784458	39788290	+	0	NA	intron (NM_001354151, intron 17 of 24)	intron (NM_001354151, intron 17 of 24)	50046	NR_148723	4253	Hs.287694	NM_005930	ENSG00000150527	MIA2	CTAGE5|MEA6|MGEA|MGEA11|MGEA6	melanoma inhibitory activity 2	protein-coding
773	chr17	76661484	76663745	+	0	NA	Intergenic	Intergenic	-34475	NR_110848	101928710	Hs.464224	NR_110848	ENSG00000267123	LINC02081	XLOC_012582	long intergenic non-protein coding RNA 2081	ncRNA
702	chr1	51893982	51901628	+	0	NA	intron (NM_001981, intron 12 of 24)	intron (NM_001981, intron 12 of 24)	-10012	NM_001159969	2060	Hs.83722	NM_001981	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
624	chr2	48489547	48497807	+	0	NA	Intergenic	LTR8|LTR|ERV1	-48118	NM_002158	3344	Hs.468478	NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
90	chr1	1581752	1584528	+	0	NA	intron (NM_033490, intron 5 of 18)	intron (NM_033490, intron 5 of 18)	14981	NR_002946	8511	Hs.671760	NR_002946	ENSG00000215914	MMP23A	MIFR|MIFR-1|MMP21	matrix metallopeptidase 23A (pseudogene)	pseudo
946	chr9	131625344	131626950	+	0	NA	intron (NM_001352997, intron 1 of 13)	intron (NM_001352997, intron 1 of 13)	-3336	NR_148225	883	Hs.495250	NM_004059	ENSG00000171097	KYAT1	CCBL1|GTK|KAT1|KATI	kynurenine aminotransferase 1	protein-coding
168	chr19	48992951	48999242	+	0	NA	intron (NM_001080434, intron 13 of 15)	intron (NM_001080434, intron 13 of 15)	20350	NM_001080434	114783	Hs.207426	NM_001080434	ENSG00000142235	LMTK3	LMR3|PPP1R101|TYKLM3	lemur tyrosine kinase 3	protein-coding
21	chr1	25893608	25898093	+	0	NA	TTS (NM_015627)	TTS (NM_015627)	25774	NM_015627	26119	Hs.590911	NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding
631	chr1	155219800	155227624	+	0	NA	exon (NM_006589, exon 4 of 12)	exon (NM_006589, exon 4 of 12)	1562	NM_198264	10712	Hs.348308	NM_006589	ENSG00000160767	FAM189B	C1orf2|COTE1	family with sequence similarity 189 member B	protein-coding
822	chr10	99182372	99190218	+	0	NA	intron (NM_002629, intron 1 of 3)	intron (NM_002629, intron 1 of 3)	413	NM_002629	5223	Hs.632918	NM_002629	ENSG00000171314	PGAM1	HEL-S-35|PGAM-B|PGAMA	phosphoglycerate mutase 1	protein-coding
118	chr12	8394303	8396986	+	0	NA	promoter-TSS (NR_024254)	promoter-TSS (NR_024254)	-102	NR_024254	653113	Hs.661749	NR_024254		FAM86FP	-	family with sequence similarity 86, member A pseudogene	pseudo
637	chr5	10698289	10714160	+	0	NA	intron (NM_004394, intron 2 of 3)	intron (NM_004394, intron 2 of 3)	55163	NM_001291963	1611	Hs.75189	NM_004394	ENSG00000112977	DAP	-	death associated protein	protein-coding
844	chr8	6413588	6415370	+	0	NA	intron (NM_001118887, intron 1 of 8)	L2a|LINE|L2	6305	NM_001147	285	Hs.583870	NM_001147	ENSG00000091879	ANGPT2	AGPT2|ANG2	angiopoietin 2	protein-coding
819	chr19	46261189	46284863	+	0	NA	promoter-TSS (NM_175875)	promoter-TSS (NM_175875)	-529	NM_175875	147912	Hs.43314	NM_175875	ENSG00000177045	SIX5	BOR2|DMAHP	SIX homeobox 5	protein-coding
824	chr5	171576826	171578585	+	0	NA	intron (NM_005990, intron 2 of 18)	intron (NM_005990, intron 2 of 18)	37641	NM_005990	6793	Hs.744005	NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
91	chr9	99997679	100003654	+	0	NA	promoter-TSS (NR_036527)	promoter-TSS (NR_036527)	-42	NR_036527	57653	Hs.435629	NR_036527	ENSG00000255036	SUGT1P4-STRA6LP-CCDC180	LOC100499484-C9ORF174	SUGT1P4-STRA6LP-CCDC180 readthrough	ncRNA
403	chr19	39830513	39834443	+	0	NA	promoter-TSS (NM_018028)	promoter-TSS (NM_018028)	-621	NM_018028	55095	Hs.612332	NM_018028	ENSG00000179134	SAMD4B	SMGB|Smaug2	sterile alpha motif domain containing 4B	protein-coding
44	chrX	131118334	131122895	+	0	NA	Intergenic	Intergenic	-36631	NM_016542	51765	Hs.444247	NM_016542	ENSG00000134602	STK26	MASK|MST4	serine/threonine kinase 26	protein-coding
108	chr5	173351028	173352983	+	0	NA	intron (NM_001308191, intron 2 of 7)	intron (NM_001308191, intron 2 of 7)	31951	NM_001308193	80315	Hs.127126	NM_030627	ENSG00000113742	CPEB4	CPE-BP4|hCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding
538	chr1	155900889	155906523	+	0	NA	intron (NM_014949, intron 1 of 13)	intron (NM_014949, intron 1 of 13)	527	NM_014949	22889	Hs.24656	NM_014949	ENSG00000132680	KHDC4	BLOM7|KIAA0907|SNORA80EHG	KH domain containing 4, pre-mRNA splicing factor	protein-coding
192	chr14	102653065	102658197	+	0	NA	intron (NM_001353659, intron 1 of 1)	intron (NM_001353659, intron 1 of 1)	46184	NM_001353832	5891	Hs.36859	NM_014226	ENSG00000080823	MOK	RAGE|RAGE-1|RAGE1|STK30	MOK protein kinase	protein-coding
392	chr12	124450210	124453486	+	0	NA	intron (NM_001304958, intron 1 of 5)	intron (NM_001304958, intron 1 of 5)	4789	NM_001304959	80212	Hs.114111	NM_025140	ENSG00000119242	CCDC92	-	coiled-coil domain containing 92	protein-coding
534	chr3	50572956	50580417	+	0	NA	Intergenic	Intergenic	28537	NM_001171743	51161	Hs.517860	NM_016210	ENSG00000088543	C3orf18	G20	chromosome 3 open reading frame 18	protein-coding
377	chr17	46596454	46601281	+	0	NA	Intergenic	Intergenic	9405	NM_002144	3211	Hs.99992	NM_002144	ENSG00000120094	HOXB1	HCFP3|HOX2|HOX2I|Hox-2.9	homeobox B1	protein-coding
511	chr20	5654235	5657323	+	0	NA	Intergenic	Intergenic	-64107	NM_019593	56261	Hs.636359	NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
709	chr15	90543184	90546168	+	0	NA	promoter-TSS (NM_198526)	promoter-TSS (NM_198526)	-47	NM_198526	374655	Hs.459311	NM_198526	ENSG00000140548	ZNF710	-	zinc finger protein 710	protein-coding
63	chr4	127671073	127676355	+	0	NA	Intergenic	MER50|LTR|ERV1	-880373	NM_015693	27152	Hs.391481	NM_015693	ENSG00000164066	INTU	CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20	inturned planar cell polarity protein	protein-coding
173	chr21	45145155	45152730	+	0	NA	intron (NM_003681, intron 1 of 10)	CpG	9964	NM_003681	8566	Hs.284491	NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
751	chr17	47752360	47757081	+	0	NA	intron (NM_001007226, intron 1 of 11)	intron (NM_001007226, intron 1 of 11)	805	NM_001007226	8405	Hs.463382	NM_003563	ENSG00000121067	SPOP	BTBD32|TEF2	speckle type BTB/POZ protein	protein-coding
520	chr3	42262310	42274515	+	0	NA	Intergenic	L2a|LINE|L2	37027	NM_001174138	885	Hs.458426	NM_000729	ENSG00000187094	CCK	-	cholecystokinin	protein-coding
326	chr8	141573723	141587948	+	0	NA	intron (NM_001164623, intron 3 of 17)	MIRb|SINE|MIR	58754	NR_040712	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
504	chr19	50267222	50281135	+	0	NA	intron (NM_014203, intron 1 of 23)	AluSx|SINE|Alu	3998	NM_014203	160	Hs.467125	NM_014203	ENSG00000196961	AP2A1	ADTAA|AP2-ALPHA|CLAPA1	adaptor related protein complex 2 subunit alpha 1	protein-coding
58	chr11	69202305	69232001	+	0	NA	Intergenic	Intergenic	-23286	NM_001319657	102724265	Hs.448669	NM_001319657		LOC102724265	-	uncharacterized LOC102724265	protein-coding
384	chr17	75216451	75218108	+	0	NA	Intergenic	Intergenic	35984	NM_001144001	6397	Hs.464184	NM_003003	ENSG00000129657	SEC14L1	PRELID4A|SEC14L	SEC14 like lipid binding 1	protein-coding
667	chr10	82211791	82234680	+	0	NA	intron (NM_001351268, intron 2 of 9)	L1MC4a|LINE|L1	4005	NM_001351270	81619	Hs.718943	NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14	tetraspanin 14	protein-coding
976	chr20	40317927	40327726	+	0	NA	Intergenic	AluSx|SINE|Alu	-75693	NM_032221	84181	Hs.740645	NM_032221	ENSG00000124177	CHD6	CHD-6|CHD5|RIGB	chromodomain helicase DNA binding protein 6	protein-coding
209	chr8	144907966	144914946	+	0	NA	promoter-TSS (NM_001136033)	promoter-TSS (NM_001136033)	100	NM_014281	22827	Hs.521924	NM_014281	ENSG00000179950	PUF60	FIR|RoBPI|SIAHBP1|VRJS	poly(U) binding splicing factor 60	protein-coding
654	chr8	146293702	146295795	+	0	NA	Intergenic	Intergenic	16924	NM_023080	65265	Hs.169615	NM_023080	ENSG00000182307	C8orf33	-	chromosome 8 open reading frame 33	protein-coding
620	chrX	40867383	40873331	+	0	NA	Intergenic	Intergenic	-74531	NM_001039590	8239	Hs.77578	NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAM|MRX99|MRXS99F	ubiquitin specific peptidase 9, X-linked	protein-coding
798	chr22	22854964	22865227	+	0	NA	intron (NR_130643, intron 1 of 2)	intron (NR_130643, intron 1 of 2)	3410	NR_130642	140883	Hs.43834	NM_080764	ENSG00000275004	ZNF280B	5'OY11.1|D87009.C22.3|SUHW2|ZNF279|ZNF632	zinc finger protein 280B	protein-coding
622	chr3	142900095	142907164	+	0	NA	Intergenic	Intergenic	65011	NM_004267	9435	Hs.8786	NM_004267	ENSG00000175040	CHST2	C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1	carbohydrate sulfotransferase 2	protein-coding
123	chr15	42771816	42811123	+	0	NA	intron (NM_130798, intron 1 of 6)	AluSp|SINE|Alu	3965	NM_130798	8773	Hs.511149	NM_003825	ENSG00000092531	SNAP23	HsT17016|SNAP-23|SNAP23A|SNAP23B	synaptosome associated protein 23	protein-coding
562	chr3	171185298	171191883	+	0	NA	Intergenic	Intergenic	-10393	NM_001161560	23043	Hs.34024	NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
262	chr19	1810104	1815037	+	0	NA	promoter-TSS (NR_047593)	promoter-TSS (NR_047593)	-295	NR_047593	148229	Hs.306212	NM_138813	ENSG00000130270	ATP8B3	ATPIK	ATPase phospholipid transporting 8B3	protein-coding
685	chr19	41367110	41373774	+	0	NA	Intergenic	Intergenic	-14090	NM_000762	1548	Hs.250615	NM_000762	ENSG00000255974	CYP2A6	CPA6|CYP2A|CYP2A3|CYPIIA6|P450C2A|P450PB	cytochrome P450 family 2 subfamily A member 6	protein-coding
472	chr13	115042561	115054450	+	0	NA	intron (NR_148495, intron 2 of 3)	intron (NR_148495, intron 2 of 3)	638	NM_001353648	65110	Hs.533855	NM_023011	ENSG00000169062	UPF3A	HUPF3A|RENT3A|UPF3	UPF3A, regulator of nonsense mediated mRNA decay	protein-coding
890	chr21	35262602	35280713	+	0	NA	Intergenic	Intergenic	16501	NM_001697	539	Hs.409140	NM_001697	ENSG00000241837	ATP5PO	ATP5O|ATPO|HMC08D05|OSCP	ATP synthase peripheral stalk subunit OSCP	protein-coding
240	chr11	96008671	96014811	+	0	NA	intron (NM_032427, intron 1 of 4)	L2c|LINE|L2	-62861	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
604	chr5	108259690	108261584	+	0	NA	intron (NM_001308031, intron 1 of 10)	intron (NM_001308031, intron 1 of 10)	330	NM_001308031	2241	Hs.107418	NM_005246	ENSG00000151422	FER	PPP1R74|TYK3|p94-Fer	FER tyrosine kinase	protein-coding
475	chr8	97259803	97300557	+	0	NA	intron (NM_001290225, intron 1 of 10)	intron (NM_001290225, intron 1 of 10)	6066	NM_001290225	9791	Hs.292579	NM_014754	ENSG00000156471	PTDSS1	LMHD|PSS1|PSSA	phosphatidylserine synthase 1	protein-coding
856	chr7	98722337	98730173	+	0	NA	intron (NM_181349, intron 1 of 17)	intron (NM_181349, intron 1 of 17)	15488	NM_001199847	57154	Hs.189329	NM_020429	ENSG00000198742	SMURF1	-	SMAD specific E3 ubiquitin protein ligase 1	protein-coding
138	chr16	89415839	89417915	+	0	NA	intron (NM_013275, intron 2 of 12)	L1ME1|LINE|L1	29336	NM_001242885	100287036	Hs.656995	NM_001242885		LOC100287036	-	uncharacterized LOC100287036	protein-coding
335	chr7	50338631	50362463	+	0	NA	intron (NM_001291847, intron 1 of 4)	intron (NM_001291847, intron 1 of 4)	2271	NM_001291838	10320	Hs.435949	NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
996	chr6	52213012	52237334	+	0	NA	Intergenic	Intergenic	-1753	NM_133367	85315	Hs.239388	NM_133367	ENSG00000170915	PAQR8	C6orf33|LMPB1|MPRB	progestin and adipoQ receptor family member 8	protein-coding
878	chr1	185498469	185503247	+	0	NA	Intergenic	Intergenic	96762	NR_110793	101929093	Hs.535227	NR_110793	ENSG00000228309	LINC01350	GS1-204I12.1	long intergenic non-protein coding RNA 1350	ncRNA
705	chr11	47411157	47418014	+	0	NA	Intergenic	Intergenic	-7936	NR_039707	100616222		NR_039707	ENSG00000264583	MIR4487	mir-4487	microRNA 4487	ncRNA
660	chr7	157203458	157205322	+	0	NA	intron (NM_058246, intron 9 of 9)	CpG	-54535	NR_110157	101927914	Hs.623826	NR_110157	ENSG00000234210	LOC101927914	-	uncharacterized LOC101927914	ncRNA
611	chr16	88382330	88384210	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-110609	NM_001127464	84627	Hs.54925	NM_001127464	ENSG00000225614	ZNF469	BCS|BCS1	zinc finger protein 469	protein-coding
352	chr3	170490681	170500909	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	92250	NM_001320451	200916	Hs.380933	NM_001099645	ENSG00000163584	RPL22L1	-	ribosomal protein L22 like 1	protein-coding
613	chr16	3436395	3442404	+	0	NA	intron (NM_001284529, intron 1 of 2)	intron (NM_001284529, intron 1 of 2)	11666	NM_001324342	54925	Hs.592078	NM_017810	ENSG00000140987	ZSCAN32	HCCS-5|ZNF434	zinc finger and SCAN domain containing 32	protein-coding
797	chr10	74663224	74666194	+	0	NA	intron (NR_130125, intron 3 of 7)	MSTB1|LTR|ERVL-MaLR	11395	NR_130125	170392	Hs.8366	NM_152635	ENSG00000138315	OIT3	LZP	oncoprotein induced transcript 3	protein-coding
877	chr3	48775904	48782166	+	0	NA	Intergenic	AluSq2|SINE|Alu	-24324	NM_001146179	51447	Hs.595983	NM_016291	ENSG00000068745	IP6K2	IHPK2|PIUS	inositol hexakisphosphate kinase 2	protein-coding
61	chr3	33688302	33706543	+	0	NA	intron (NM_015097, intron 7 of 38)	intron (NM_015097, intron 7 of 38)	3511	NM_001207044	23122	Hs.108614	NM_015097	ENSG00000163539	CLASP2	-	cytoplasmic linker associated protein 2	protein-coding
254	chr15	67315495	67323622	+	0	NA	intron (NR_135686, intron 2 of 5)	AluSx1|SINE|Alu	36962	NR_135686	102723493	Hs.419760	NR_135686		LOC102723493	-	uncharacterized LOC102723493	ncRNA
739	chr5	134901184	134902609	+	0	NA	Intergenic	MIRb|SINE|MIR	-12959	NM_001349345	153328	Hs.412418	NM_145282	ENSG00000145832	SLC25A48	-	solute carrier family 25 member 48	protein-coding
979	chr11	67865928	67868477	+	0	NA	intron (NM_001277, intron 1 of 11)	intron (NM_001277, intron 1 of 11)	21656	NM_212469	1119	Hs.77221	NM_001277	ENSG00000110721	CHKA	CHK|CK|CKI|EK	choline kinase alpha	protein-coding
216	chr2	172286644	172293521	+	0	NA	promoter-TSS (NR_028482)	promoter-TSS (NR_028482)	537	NM_001321155	79828	Hs.135146	NM_024770	ENSG00000123600	METTL8	TIP	methyltransferase like 8	protein-coding
298	chr22	40435348	40442870	+	0	NA	Intergenic	Intergenic	-1712	NM_001024843	23112	Hs.372082	NM_015088	ENSG00000100354	TNRC6B	-	trinucleotide repeat containing 6B	protein-coding
131	chr17	45567883	45572119	+	0	NA	promoter-TSS (NR_033934)	promoter-TSS (NR_033934)	-15	NR_033934	653479	Hs.537279	NR_033934		MRPL45P2	-	mitochondrial ribosomal protein L45 pseudogene 2	pseudo
683	chr4	26574676	26602338	+	0	NA	intron (NM_001292054, intron 1 of 17)	L1ME1|LINE|L1	2961	NM_001292054	55296	Hs.479403	NM_018317	ENSG00000109680	TBC1D19	-	TBC1 domain family member 19	protein-coding
736	chr22	20859501	20890400	+	0	NA	intron (NM_001293237, intron 1 of 16)	intron (NM_001293237, intron 1 of 16)	12615	NM_001293237	51586	Hs.517421	NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
136	chr6	3155843	3169233	+	0	NA	Intergenic	MIR|SINE|MIR	-4755	NM_001069	7280	Hs.654543	NM_001069	ENSG00000137267	TUBB2A	CDCBM5|TUBB|TUBB2	tubulin beta 2A class IIa	protein-coding
393	chr14	77502340	77514151	+	0	NA	intron (NR_110554, intron 1 of 3)	intron (NR_110554, intron 1 of 3)	853	NR_110554	283575	Hs.651736	NR_110554	ENSG00000246548	LINC02288	-	long intergenic non-protein coding RNA 2288	ncRNA
693	chr15	96672993	96680624	+	0	NA	intron (NR_125738, intron 3 of 4)	AluSp|SINE|Alu	-192349	NM_001145155	7026	Hs.347991	NM_021005	ENSG00000185551	NR2F2	ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2	nuclear receptor subfamily 2 group F member 2	protein-coding
321	chr11	65653026	65669415	+	0	NA	intron (NM_001300857, intron 1 of 1)	AluSz6|SINE|Alu	3345	NM_006848	11007	Hs.66713	NM_006848	ENSG00000175602	CCDC85B	DIPA	coiled-coil domain containing 85B	protein-coding
286	chr2	132439210	132441679	+	0	NA	non-coding (NR_149016, exon 1 of 6)	non-coding (NR_149016, exon 1 of 6)	444	NM_001354871	29798	Hs.635289	NM_013310		C2orf27A	C2orf27|C2orf27B	chromosome 2 open reading frame 27A	protein-coding
179	chr11	119074254	119081857	+	0	NA	intron (NM_005188, intron 1 of 15)	intron (NM_005188, intron 1 of 15)	1069	NM_005188	867	Hs.504096	NM_005188	ENSG00000110395	CBL	C-CBL|CBL2|FRA11B|NSLL|RNF55	Cbl proto-oncogene	protein-coding
985	chr5	149670852	149675682	+	0	NA	Intergenic	Intergenic	-3864	NM_015981	815	Hs.743976	NM_015981	ENSG00000070808	CAMK2A	CAMKA|MRD53	calcium/calmodulin dependent protein kinase II alpha	protein-coding
233	chr17	78964297	78967935	+	0	NA	intron (NM_024591, intron 1 of 7)	CpG	475	NM_024591	79643	Hs.514560	NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
324	chr6	16235025	16243207	+	0	NA	intron (NM_006877, intron 1 of 8)	CpG	305	NM_006877	2766	Hs.484741	NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
477	chr10	70905119	70907571	+	0	NA	intron (NM_001318944, intron 3 of 9)	L1MB4|LINE|L1	22436	NM_001318946	9559	Hs.499925	NM_004896	ENSG00000122958	VPS26A	HB58|Hbeta58|PEP8A|VPS26	VPS26, retromer complex component A	protein-coding
783	chr4	186344608	186349190	+	0	NA	intron (NR_144317, intron 1 of 11)	CpG	240	NR_144317	55325	Hs.713548	NM_018359	ENSG00000109775	UFSP2	BHD|C4orf20	UFM1 specific peptidase 2	protein-coding
923	chr10	104501243	104507303	+	0	NA	intron (NM_001083913, intron 1 of 3)	intron (NM_001083913, intron 1 of 3)	546	NM_001083913	54838	Hs.500897	NM_017787	ENSG00000166272	WBP1L	C10orf26|OPA1L|OPAL1	WW domain binding protein 1 like	protein-coding
199	chr3	129146024	129151970	+	0	NA	TTS (NM_001276273)	TTS (NM_001276273)	-1503	NM_207307	90288	Hs.652347	NM_207307	ENSG00000172771	EFCAB12	C3orf25	EF-hand calcium binding domain 12	protein-coding
496	chr6	31523742	31531875	+	0	NA	non-coding (NR_149045, exon 2 of 2)	non-coding (NR_149045, exon 2 of 2)	-12068	NM_001159740	4049	Hs.36	NM_000595	ENSG00000226979	LTA	LT|TNFB|TNFSF1|TNLG1E	lymphotoxin alpha	protein-coding
854	chr1	41326970	41336762	+	0	NA	Intergenic	Intergenic	-3848	NM_133467	163732	Hs.355820	NM_133467	ENSG00000179862	CITED4	-	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4	protein-coding
759	chr12	105046550	105048815	+	0	NA	intron (NM_001173982, intron 2 of 2)	intron (NM_001173982, intron 2 of 2)	62271	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
418	chr17	66286239	66290290	+	0	NA	promoter-TSS (NM_001352902)	promoter-TSS (NM_001352902)	52	NM_001352901	22901	Hs.437249	NM_014960	ENSG00000141337	ARSG	-	arylsulfatase G	protein-coding
701	chr18	666712	696274	+	0	NA	intron (NR_148711, intron 9 of 14)	intron (NR_148711, intron 9 of 14)	-23153	NM_001012716	494514	Hs.274959	NM_001012716		TYMSOS	C18orf56	TYMS opposite strand	protein-coding
467	chr1	32291197	32294362	+	0	NA	Intergenic	LTR16E1|LTR|ERVL	-11127	NM_001281987	90853	Hs.62604	NM_144569	ENSG00000134668	SPOCD1	PPP1R146	SPOC domain containing 1	protein-coding
350	chr11	95273584	95279934	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	246195	NM_144664	143684	Hs.288304	NM_144664	ENSG00000077458	FAM76B	-	family with sequence similarity 76 member B	protein-coding
803	chr5	127413415	127422516	+	0	NA	intron (NR_152812, intron 1 of 4)	AluY|SINE|Alu	902	NR_152813	644873	Hs.340623	NR_015360	ENSG00000245937	LINC01184	-	long intergenic non-protein coding RNA 1184	ncRNA
651	chr6	140466917	140476039	+	0	NA	Intergenic	Intergenic	-54911	NR_037441	100500879		NR_037441	ENSG00000263514	MIR3668	-	microRNA 3668	ncRNA
594	chr19	18399408	18407055	+	0	NA	Intergenic	CpG	10344	NR_036155	100422833		NR_036155	ENSG00000267959	MIR3188	mir-3188	microRNA 3188	ncRNA
897	chr12	771711	773975	+	0	NA	promoter-TSS (NM_016533)	promoter-TSS (NM_016533)	64	NM_016533	4815	Hs.655804	NM_016533	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
445	chr7	133880919	133889262	+	0	NA	intron (NM_144648, intron 14 of 19)	intron (NM_144648, intron 14 of 19)	72985	NM_144648	136332	Hs.149774	NM_144648	ENSG00000155530	LRGUK	CFAP246	leucine rich repeats and guanylate kinase domain containing	protein-coding
425	chr2	159176444	159179695	+	0	NA	intron (NM_138803, intron 7 of 13)	intron (NM_138803, intron 7 of 13)	135196	NM_001301684	130940	Hs.668597	NM_138803	ENSG00000153237	CCDC148	-	coiled-coil domain containing 148	protein-coding
848	chr17	76833981	76839991	+	0	NA	promoter-TSS (NM_001321291)	promoter-TSS (NM_001321291)	-377	NM_001321291	57602	Hs.464243	NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
247	chr1	156457658	156477320	+	0	NA	intron (NM_005920, intron 1 of 11)	intron (NM_005920, intron 1 of 11)	3145	NM_005920	4209	Hs.314327	NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
578	chr8	30599205	30605065	+	0	NA	intron (NM_001282189, intron 1 of 8)	FLAM_C|SINE|Alu	453	NM_001282199	7993	Hs.153678	NM_005671	ENSG00000104691	UBXN8	D8S2298E|REP8|UBXD6	UBX domain protein 8	protein-coding
217	chr16	70332087	70334535	+	0	NA	intron (NM_001014449, intron 1 of 9)	intron (NM_001014449, intron 1 of 9)	249	NM_001014449	11269	Hs.221761	NM_007242	ENSG00000157349	DDX19B	DBP5|DDX19|RNAh	DEAD-box helicase 19B	protein-coding
801	chr22	23246943	23248297	+	0	NA	Intergenic	Intergenic	17660	NM_001178126	100423062	Hs.449574	NM_001178126	ENSG00000254709	IGLL5	IGL|IGLV|VL-MAR	immunoglobulin lambda like polypeptide 5	protein-coding
665	chr22	19942214	19965432	+	0	NA	intron (NM_000754, intron 5 of 5)	intron (NM_000754, intron 5 of 5)	2547	NR_039918	100616414		NR_039918	ENSG00000284031	MIR4761	-	microRNA 4761	ncRNA
558	chr3	172238991	172241842	+	0	NA	intron (NM_001190943, intron 1 of 1)	intron (NM_001190943, intron 1 of 1)	849	NM_001190943	8743	Hs.478275	NM_003810	ENSG00000121858	TNFSF10	APO2L|Apo-2L|CD253|TL2|TNLG6A|TRAIL	TNF superfamily member 10	protein-coding
219	chr19	18411177	18418200	+	0	NA	Intergenic	AluSx|SINE|Alu	19313	NM_001252129	25804	Hs.515255	NM_012321	ENSG00000130520	LSM4	GRP|YER112W	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
884	chr2	11604417	11608186	+	0	NA	promoter-TSS (NM_212540)	promoter-TSS (NM_212540)	2	NM_001278275	1876	Hs.603093	NM_198256	ENSG00000169016	E2F6	E2F-6	E2F transcription factor 6	protein-coding
381	chr19	55544149	55556864	+	0	NA	promoter-TSS (NM_001083899)	promoter-TSS (NM_001083899)	-874	NM_001256017	51206	Hs.661752	NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
190	chr9	131441989	131472267	+	0	NA	3' UTR (NM_003011, exon 8 of 8)	3' UTR (NM_003011, exon 8 of 8)	4874	NM_001248001	6418	Hs.436687	NM_003011	ENSG00000119335	SET	2PP2A|I2PP2A|IGAAD|IPP2A2|PHAPII|TAF-I|TAF-IBETA	SET nuclear proto-oncogene	protein-coding
226	chr12	49713536	49721804	+	0	NA	exon (NM_001278324, exon 3 of 4)	exon (NM_001278324, exon 3 of 4)	689	NR_120449	101927267	Hs.640101	NR_120449	ENSG00000258334	LOC101927267	-	uncharacterized LOC101927267	ncRNA
523	chr16	81610516	81622764	+	0	NA	intron (NM_030629, intron 1 of 20)	intron (NM_030629, intron 1 of 20)	-28313	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
323	chr1	101357026	101364136	+	0	NA	non-coding (NR_048570, exon 1 of 6)	non-coding (NR_048570, exon 1 of 6)	154	NM_001261441	2135	Hs.357637	NM_001439	ENSG00000162694	EXTL2	EXTR2	exostosin like glycosyltransferase 2	protein-coding
805	chr11	118268442	118274980	+	0	NA	promoter-TSS (NR_033759)	promoter-TSS (NR_033759)	-393	NR_033759	10632	Hs.486360	NM_006476	ENSG00000167283	ATP5MG	ATP5JG|ATP5L	ATP synthase membrane subunit g	protein-coding
978	chr5	61878317	61882528	+	0	NA	intron (NR_073584, intron 1 of 3)	AluJb|SINE|Alu	5860	NR_073584	101180901	Hs.482269	NR_073584	ENSG00000086200	IPO11-LRRC70	-	IPO11-LRRC70 readthrough	ncRNA
200	chr17	39990224	39994264	+	0	NA	non-coding (NR_033465, exon 1 of 8)	non-coding (NR_033465, exon 1 of 8)	244	NR_033464	115024	Hs.237536	NM_052935	ENSG00000141698	NT5C3B	NT5C3L|cN-IIIB	5'-nucleotidase, cytosolic IIIB	protein-coding
655	chr1	9987463	9992177	+	0	NA	3' UTR (NM_001316976, exon 6 of 6)	3' UTR (NM_001316976, exon 6 of 6)	-13161	NM_001297778	64802	Hs.633762	NM_022787	ENSG00000173614	NMNAT1	LCA9|NMNAT|PNAT1	nicotinamide nucleotide adenylyltransferase 1	protein-coding
343	chr8	41664390	41666343	+	0	NA	intron (NM_001142446, intron 1 of 42)	intron (NM_001142446, intron 1 of 42)	-10226	NM_000037	286	Hs.654438	NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2	ankyrin 1	protein-coding
215	chr8	126525303	126527822	+	0	NA	Intergenic	(CAT)n|Simple_repeat|Simple_repeat	82111	NM_001282985	10221	Hs.444947	NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
46	chr7	44861823	44873334	+	0	NA	3' UTR (NM_138635, exon 5 of 5)	3' UTR (NM_138635, exon 5 of 5)	20147	NM_012412	94239	Hs.488189	NM_012412	ENSG00000105968	H2AFV	H2A.Z-2|H2AV	H2A histone family member V	protein-coding
764	chr6	28729442	28733402	+	0	NA	Intergenic	tRNA-Phe-TTY|tRNA|tRNA	100032	NR_033379	401242	Hs.448285	NR_033379	ENSG00000225595	LINC01623	-	long intergenic non-protein coding RNA 1623	ncRNA
643	chr4	186128706	186134079	+	0	NA	intron (NM_001317781, intron 1 of 18)	CpG	6001	NM_001317781	83891	Hs.369091	NM_031953	ENSG00000109762	SNX25	MSTP043|SBBI31	sorting nexin 25	protein-coding
120	chr9	95819023	95825067	+	0	NA	intron (NM_001287007, intron 1 of 2)	MIRb|SINE|MIR	1075	NM_001287006	203328	Hs.88417	NM_145006	ENSG00000157303	SUSD3	-	sushi domain containing 3	protein-coding
746	chr19	6752424	6754566	+	0	NA	exon (NM_005490, exon 9 of 10)	exon (NM_005490, exon 9 of 10)	13802	NM_001288962	9322	Hs.515094	NM_004240	ENSG00000125733	TRIP10	CIP4|HSTP|STOT|STP|TRIP-10	thyroid hormone receptor interactor 10	protein-coding
748	chr8	104382324	104385236	+	0	NA	promoter-TSS (NM_138455)	promoter-TSS (NM_138455)	37	NM_138455	115908	Hs.405614	NM_138455	ENSG00000164932	CTHRC1	-	collagen triple helix repeat containing 1	protein-coding
717	chr2	11325806	11328299	+	0	NA	intron (NM_004850, intron 32 of 32)	L2c|LINE|L2	31554	NM_001282711	130814	Hs.274415	NM_152391	ENSG00000162976	PQLC3	C2orf22	PQ loop repeat containing 3	protein-coding
346	chr5	72247779	72256402	+	0	NA	intron (NM_138782, intron 1 of 25)	CpG	282	NM_001146032	115548	Hs.165762	NM_138782	ENSG00000157107	FCHO2	-	FCH domain only 2	protein-coding
304	chr17	80315492	80319968	+	0	NA	intron (NM_207459, intron 1 of 1)	intron (NM_207459, intron 1 of 1)	607	NM_207459	400629	Hs.231897	NM_207459	ENSG00000182459	TEX19	-	testis expressed 19	protein-coding
9	chr11	126210768	126227804	+	0	NA	3' UTR (NM_001350236, exon 6 of 6)	3' UTR (NM_001350236, exon 6 of 6)	6196	NR_033839	399972	Hs.585206	NR_033839		GSEC	DCPS-AS1|ST3GAL4-AS1	G-quadruplex forming sequence containing lncRNA	ncRNA
568	chr9	4790249	4803201	+	0	NA	intron (NM_001286699, intron 1 of 6)	L1PA17|LINE|L1	3891	NM_005772	10171	Hs.194121	NM_005772	ENSG00000120158	RCL1	RNAC|RPCL1	RNA terminal phosphate cyclase like 1	protein-coding
817	chr22	38081106	38084207	+	0	NA	intron (NM_024313, intron 1 of 5)	CpG	312	NM_024313	79159	Hs.632778	NM_024313	ENSG00000273899	NOL12	Nop25|dJ37E16.7	nucleolar protein 12	protein-coding
949	chr19	1630683	1635455	+	0	NA	intron (NM_001136139, intron 2 of 18)	intron (NM_001136139, intron 2 of 18)	17217	NM_001136139	6929	Hs.371282	NM_003200	ENSG00000071564	TCF3	AGM8|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
71	chr19	10370194	10372006	+	0	NA	TTS (NM_015956)	TTS (NM_015956)	8460	NM_146388	51073	Hs.279652	NM_015956	ENSG00000105364	MRPL4	CGI-28|L4mt	mitochondrial ribosomal protein L4	protein-coding
169	chr22	45106046	45107453	+	0	NA	intron (NM_001017528, intron 2 of 8)	intron (NM_001017528, intron 2 of 8)	8671	NM_181334	553158	Hs.102336	NM_181334	ENSG00000248405	PRR5-ARHGAP8	-	PRR5-ARHGAP8 readthrough	protein-coding
336	chr1	21713852	21720614	+	0	NA	Intergenic	MER41-int|LTR|ERV1	-45199	NM_001113348	1889	Hs.195080	NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
977	chr10	5575943	5599469	+	0	NA	Intergenic	Intergenic	-19497	NR_120496	100132159	Hs.239600	NR_120496		CALML3-AS1	-	CALML3 antisense RNA 1	ncRNA
567	chr2	65247105	65253231	+	0	NA	3' UTR (NM_003038, exon 8 of 8)	3' UTR (NM_003038, exon 8 of 8)	-33327	NM_001319101	23177	Hs.709257	NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
296	chr6	42936247	42941512	+	0	NA	intron (NM_000287, intron 3 of 16)	intron (NM_000287, intron 3 of 16)	8102	NM_001316313	5190	Hs.656425	NM_000287	ENSG00000124587	PEX6	HMLR2|PAF-2|PAF2|PBD4A|PDB4B|PXAAA1	peroxisomal biogenesis factor 6	protein-coding
962	chr6	15566995	15573025	+	0	NA	intron (NM_001271667, intron 7 of 9)	L2b|LINE|L2	93279	NM_032122	84062	Hs.571148	NM_032122	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
723	chr9	95825745	95827974	+	0	NA	intron (NM_001287007, intron 1 of 2)	intron (NM_001287007, intron 1 of 2)	5889	NM_001287006	203328	Hs.88417	NM_145006	ENSG00000157303	SUSD3	-	sushi domain containing 3	protein-coding
883	chr1	157230203	157234206	+	0	NA	Intergenic	Intergenic	-123821	NM_005240	2117	Hs.105636	NM_005240	ENSG00000117036	ETV3	METS|PE-1|PE1	ETS variant 3	protein-coding
972	chr2	87815342	87819124	+	0	NA	intron (NR_024204, intron 3 of 3)	intron (NR_024204, intron 3 of 3)	47764	NR_146460	112597	Hs.652166	NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
677	chr1	156593171	156596661	+	0	NA	exon (NM_021817, exon 7 of 7)	exon (NM_021817, exon 7 of 7)	-3196	NR_135113	101928177	Hs.571810	NR_135113		LOC101928177	-	uncharacterized LOC101928177	ncRNA
359	chr1	212310028	212343440	+	0	NA	Intergenic	MIRb|SINE|MIR	75779	NR_036068	100422947		NR_036068	ENSG00000264358	MIR3122	mir-3122	microRNA 3122	ncRNA
10	chr4	96107652	96110642	+	0	NA	intron (NM_003728, intron 12 of 15)	Charlie7a|DNA|hAT-Charlie	96505	NM_001256794	658	Hs.598475	NM_001203	ENSG00000138696	BMPR1B	ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293	bone morphogenetic protein receptor type 1B	protein-coding
888	chr21	45626114	45628544	+	0	NA	Intergenic	Intergenic	33558	NM_001283051	23308	Hs.14155	NM_015259	ENSG00000160223	ICOSLG	B7-H2|B7H2|B7RP-1|B7RP1|CD275|GL50|ICOS-L|ICOSL|LICOS	inducible T cell costimulator ligand	protein-coding
831	chr19	50859068	50868657	+	0	NA	intron (NM_004851, intron 5 of 8)	intron (NM_004851, intron 5 of 8)	5225	NM_004851	9476	Hs.512843	NM_004851	ENSG00000131400	NAPSA	KAP|Kdap|NAP1|NAPA|SNAPA	napsin A aspartic peptidase	protein-coding
547	chr17	79612312	79615832	+	0	NA	intron (NM_001290212, intron 3 of 3)	intron (NM_001290212, intron 3 of 3)	4741	NR_110866	83882	Hs.208219	NM_031945	ENSG00000182612	TSPAN10	OCSP	tetraspanin 10	protein-coding
45	chr16	30824595	30827116	+	0	NA	Intergenic	CpG	-27315	NM_001080417	23361	Hs.301094	NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
642	chr11	47867089	47872657	+	0	NA	exon (NM_001318399, exon 1 of 3)	exon (NM_001318399, exon 1 of 3)	223	NM_015231	23279	Hs.643526	NM_015231	ENSG00000030066	NUP160	-	nucleoporin 160	protein-coding
261	chr19	40020966	40035596	+	0	NA	Intergenic	L1MC4a|LINE|L1	2557	NM_153232	163126	Hs.18949	NM_153232	ENSG00000176396	EID2	CRI2|EID-2	EP300 interacting inhibitor of differentiation 2	protein-coding
796	chr15	51053764	51060129	+	0	NA	intron (NM_032802, intron 1 of 14)	intron (NM_032802, intron 1 of 14)	964	NM_032802	84888	Hs.401537	NM_032802	ENSG00000138600	SPPL2A	IMP3|PSL2	signal peptide peptidase like 2A	protein-coding
77	chr10	15825761	15862181	+	0	NA	intron (NM_024948, intron 10 of 14)	Tigger2|DNA|TcMar-Tigger	58561	NM_001318330	80013	Hs.158870	NM_024948	ENSG00000148481	MINDY3	C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042	MINDY lysine 48 deubiquitinase 3	protein-coding
933	chr19	8453405	8456971	+	0	NA	promoter-TSS (NM_004218)	promoter-TSS (NM_004218)	-17	NM_004218	9230	Hs.558403	NM_004218	ENSG00000185236	RAB11B	H-YPT3|NDAGSCW	RAB11B, member RAS oncogene family	protein-coding
669	chr10	75499993	75506566	+	0	NA	promoter-TSS (NM_004922)	promoter-TSS (NM_004922)	-852	NM_004922	9632	Hs.81964	NM_004922	ENSG00000176986	SEC24C	-	SEC24 homolog C, COPII coat complex component	protein-coding
227	chr8	97244035	97249893	+	0	NA	intron (NM_001199975, intron 1 of 4)	AluYc|SINE|Alu	898	NM_001199975	7381	Hs.131255	NM_006294	ENSG00000156467	UQCRB	MC3DN3|QCR7|QP-C|QPC|UQBC|UQBP|UQCR6|UQPC	ubiquinol-cytochrome c reductase binding protein	protein-coding
503	chr1	46720091	46721851	+	0	NA	intron (NM_003579, intron 3 of 17)	intron (NM_003579, intron 3 of 17)	7604	NM_001142548	8438	Hs.642042	NM_003579	ENSG00000085999	RAD54L	HR54|RAD54A|hHR54|hRAD54	RAD54 like	protein-coding
109	chr18	52547557	52549954	+	0	NA	intron (NM_004163, intron 3 of 5)	LTR45C|LTR|ERV1	53047	NM_004163	5874	Hs.25318	NM_004163	ENSG00000041353	RAB27B	C25KG	RAB27B, member RAS oncogene family	protein-coding
551	chr22	29782989	29785774	+	0	NA	intron (NM_145730, intron 1 of 20)	CpG	191	NM_145730	162	Hs.368794	NM_001127	ENSG00000100280	AP1B1	ADTB1|AP105A|BAM22|CLAPB2	adaptor related protein complex 1 subunit beta 1	protein-coding
201	chr3	52151280	52173085	+	0	NA	intron (NM_015426, intron 7 of 10)	intron (NM_015426, intron 7 of 10)	26524	NM_001161580	25886	Hs.476306	NM_015426	ENSG00000164087	POC1A	PIX2|SOFT|WDR51A	POC1 centriolar protein A	protein-coding
766	chr1	40862960	40867545	+	0	NA	intron (NM_001198980, intron 1 of 9)	AluJr|SINE|Alu	2780	NM_001198980	64744	Hs.15200	NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
802	chr15	52134211	52139435	+	0	NA	intron (NM_014547, intron 1 of 9)	intron (NM_014547, intron 1 of 9)	14998	NM_014547	29766	Hs.4998	NM_014547	ENSG00000138594	TMOD3	UTMOD	tropomodulin 3	protein-coding
791	chr12	121703028	121706260	+	0	NA	intron (NM_153499, intron 5 of 15)	intron (NM_153499, intron 5 of 15)	7744	NM_001270486	10645	Hs.297343	NM_006549	ENSG00000110931	CAMKK2	CAMKK|CAMKKB	calcium/calmodulin dependent protein kinase kinase 2	protein-coding
673	chr3	39202300	39228446	+	0	NA	Intergenic	L1PREC2|LINE|L1	18714	NM_001351377	165904	Hs.447868	NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
621	chr5	53672000	53703521	+	0	NA	intron (NR_126379, intron 1 of 4)	L1ME3C|LINE|L1	-63671	NM_006308	8988	Hs.41707	NM_006308	ENSG00000169271	HSPB3	DHMN2C|HMN2C|HSPL27	heat shock protein family B (small) member 3	protein-coding
157	chr12	117535955	117538952	+	0	NA	promoter-TSS (NM_001168325)	promoter-TSS (NM_001168325)	181	NR_120464	101928244	Hs.742266	NR_120464		TESC-AS1	-	TESC antisense RNA 1 (head to head)	ncRNA
546	chr6	15792209	15795818	+	0	NA	Intergenic	Intergenic	-130724	NR_036448	84062	Hs.571148	NM_032122	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
945	chr22	23374036	23381581	+	0	NA	Intergenic	MER50B|LTR|ERV1	-34732	NM_002073	2781	Hs.584760	NM_002073	ENSG00000128266	GNAZ	gz-alpha	G protein subunit alpha z	protein-coding
635	chr5	177502470	177503903	+	0	NA	Intergenic	Intergenic	-37370	NM_015111	23138	Hs.101761	NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
718	chr11	66371110	66373039	+	0	NA	intron (NM_005125, intron 5 of 7)	intron (NM_005125, intron 5 of 7)	11384	NM_005125	9973	Hs.502917	NM_005125	ENSG00000173992	CCS	-	copper chaperone for superoxide dismutase	protein-coding
814	chr1	25737359	25742416	+	0	NA	intron (NM_138618, intron 1 of 8)	intron (NM_138618, intron 1 of 8)	7518	NM_001330430	6006	Hs.449968	NM_020485	ENSG00000188672	RHCE	CD240CE|RH|RH30A|RHC|RHCe(152N)|RHE|RHIXB|RHPI|Rh4|RhIVb(J)|RhVI|RhVIII	Rh blood group CcEe antigens	protein-coding
860	chr6	17966872	17975096	+	0	NA	intron (NM_001243423, intron 2 of 2)	intron (NM_001243423, intron 2 of 2)	16870	NM_001105567	63971	Hs.94499	NM_022113	ENSG00000137177	KIF13A	RBKIN|bA500C11.2	kinesin family member 13A	protein-coding
915	chr13	97898914	97917133	+	0	NA	intron (NM_001306070, intron 1 of 7)	intron (NM_001306070, intron 1 of 7)	33473	NM_144778	10150	Hs.657347	NM_144778	ENSG00000139793	MBNL2	MBLL|MBLL39|PRO2032	muscleblind like splicing regulator 2	protein-coding
141	chr21	33741428	33772065	+	0	NA	exon (NM_014825, exon 3 of 39)	exon (NM_014825, exon 3 of 39)	-7115	NR_002996	677846	Hs.712293	NR_002996	ENSG00000200792	SNORA80A	ACA67|SNORA80	small nucleolar RNA, H/ACA box 80A	snoRNA
862	chr19	4203584	4205538	+	0	NA	intron (NM_133475, intron 7 of 21)	intron (NM_133475, intron 7 of 21)	21210	NM_133475	170961	Hs.197872	NM_133475	ENSG00000089847	ANKRD24	-	ankyrin repeat domain 24	protein-coding
407	chr3	52486141	52492240	+	0	NA	promoter-TSS (NM_007184)	promoter-TSS (NM_007184)	-334	NM_001276293	11188	Hs.435290	NM_007184	ENSG00000010322	NISCH	I-1|IR1|IRAS|hIRAS	nischarin	protein-coding
939	chr14	74189548	74198688	+	0	NA	intron (NM_001043318, intron 5 of 11)	intron (NM_001043318, intron 5 of 11)	-12990	NM_006029	9240	Hs.194709	NM_006029	ENSG00000176903	PNMA1	MA1	PNMA family member 1	protein-coding
553	chr16	30702543	30704305	+	0	NA	Intergenic	Intergenic	6386	NM_001256932	730183	Hs.535456	NM_001256932	ENSG00000261840	LOC730183	-	uncharacterized LOC730183	protein-coding
740	chr19	49478426	49480283	+	0	NA	intron (NM_002103, intron 10 of 15)	intron (NM_002103, intron 10 of 15)	10788	NM_000146	2512	Hs.433670	NM_000146	ENSG00000087086	FTL	LFTD|NBIA3	ferritin light chain	protein-coding
106	chr11	17095623	17102332	+	0	NA	exon (NM_001017, exon 2 of 6)	exon (NM_001017, exon 2 of 6)	243	NM_001017	6207	Hs.446588	NM_001017	ENSG00000110700	RPS13	S13	ribosomal protein S13	protein-coding
727	chr22	23022073	23033720	+	0	NA	Intergenic	Intergenic	39114	NM_199127	91227	Hs.450000	NM_080839	ENSG00000100121	GGTLC2	GGTL4	gamma-glutamyltransferase light chain 2	protein-coding
929	chr1	150477266	150491101	+	0	NA	exon (NM_001202858, exon 7 of 10)	exon (NM_001202858, exon 7 of 10)	3696	NM_001202858	1893	Hs.81071	NM_004425	ENSG00000143369	ECM1	URBWD	extracellular matrix protein 1	protein-coding
160	chr1	161579739	161585012	+	0	NA	Intergenic	CpG	6526	NR_024151	3311	Hs.662180	NR_024151		HSPA7	HSP70B	heat shock protein family A (Hsp70) member 7	pseudo
781	chr5	137898031	137917828	+	0	NA	intron (NM_004134, intron 3 of 16)	intron (NM_004134, intron 3 of 16)	3389	NM_004134	3313	Hs.184233	NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
763	chr15	93434947	93436296	+	0	NA	intron (NR_037602, intron 4 of 4)	MER58A|DNA|hAT-Charlie	-7930	NM_001042572	1106	Hs.220864	NM_001271	ENSG00000173575	CHD2	EEOC	chromodomain helicase DNA binding protein 2	protein-coding
919	chr13	53086994	53089025	+	0	NA	intron (NR_002793, intron 8 of 23)	L1M2c|LINE|L1	24881	NR_002793	220115	Hs.528448	NR_002793		TPTE2P3	TPTEps1	transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 3	pseudo
476	chr17	73442847	73446633	+	0	NA	Intergenic	Intergenic	-7805	NM_001351202	9772	Hs.514474	NM_014738	ENSG00000177728	TMEM94	KIAA0195	transmembrane protein 94	protein-coding
469	chr2	63813369	63819509	+	0	NA	promoter-TSS (NR_148705)	promoter-TSS (NR_148705)	154	NM_001199111	4190	Hs.526521	NM_005917	ENSG00000014641	MDH1	HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2	malate dehydrogenase 1	protein-coding
521	chr2	65777939	65781330	+	0	NA	Intergenic	Intergenic	-119978	NM_181784	200734	Hs.59332	NM_181784	ENSG00000198369	SPRED2	Spred-2	sprouty related EVH1 domain containing 2	protein-coding
867	chr12	133402649	133407859	+	0	NA	promoter-TSS (NM_005895)	promoter-TSS (NM_005895)	34	NM_005895	2802	Hs.507333	NM_005895	ENSG00000090615	GOLGA3	GCP170|MEA-2	golgin A3	protein-coding
853	chr16	89645892	89648714	+	0	NA	intron (NM_014427, intron 3 of 16)	CpG	5127	NM_153636	27132	Hs.461775	NM_014427	ENSG00000178773	CPNE7	-	copine 7	protein-coding
515	chr12	111264176	111265412	+	0	NA	Intergenic	MIRb|SINE|MIR	-19970	NM_152591	160762	Hs.437141	NM_152591	ENSG00000173093	CCDC63	ODA5	coiled-coil domain containing 63	protein-coding
934	chr3	47841883	47847091	+	0	NA	promoter-TSS (NM_001330990)	promoter-TSS (NM_001330990)	88	NM_014966	22907	Hs.517948	NM_014966	ENSG00000132153	DHX30	DDX30|NEDMIAL|RETCOR	DExH-box helicase 30	protein-coding
489	chr11	59302505	59307983	+	0	NA	Intergenic	Intergenic	22858	NM_001004711	390199	Hs.553757	NM_001004711	ENSG00000172742	OR4D9	OR11-253	olfactory receptor family 4 subfamily D member 9	protein-coding
99	chr1	236713340	236715183	+	0	NA	exon (NM_018072, exon 45 of 45)	exon (NM_018072, exon 45 of 45)	-26453	NR_034040	100287902	Hs.677376	NR_034040	ENSG00000223776	LGALS8-AS1	-	LGALS8 antisense RNA 1	ncRNA
2	chr5	96259191	96260539	+	0	NA	Intergenic	Intergenic	-11481	NM_005575	4012	Hs.527199	NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
331	chr21	37800872	37803967	+	0	NA	Intergenic	Intergenic	36320	NM_012130	23562	Hs.660278	NM_012130	ENSG00000159261	CLDN14	DFNB29	claudin 14	protein-coding
223	chr14	23814247	23816418	+	0	NA	TTS (NM_001289050)	TTS (NM_001289050)	6328	NM_020372	51310	Hs.373498	NM_016609	ENSG00000092096	SLC22A17	24p3R|BOCT|BOIT|NGALR|NGALR2|NGALR3|hBOIT	solute carrier family 22 member 17	protein-coding
628	chr17	45917144	45919540	+	0	NA	intron (NM_138355, intron 1 of 7)	CpG	357	NM_138355	90507	Hs.239718	NM_138355	ENSG00000141295	SCRN2	Ses2	secernin 2	protein-coding
291	chr19	36205889	36212228	+	0	NA	exon (NM_014727, exon 1 of 37)	exon (NM_014727, exon 1 of 37)	137	NM_014727	9757	Hs.92236	NM_014727	ENSG00000272333	KMT2B	CXXC10|DYT28|HRX2|MLL1B|MLL2|MLL4|TRX2|WBP-7|WBP7	lysine methyltransferase 2B	protein-coding
436	chr5	39185843	39205717	+	0	NA	intron (NM_001349333, intron 3 of 19)	intron (NM_001349333, intron 3 of 19)	23928	NM_001465	2533	Hs.370503	NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
786	chr3	5806649	5812758	+	0	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	-517763	NR_039953	100616334		NR_039953	ENSG00000265180	MIR4790	-	microRNA 4790	ncRNA
481	chr7	66307863	66313235	+	0	NA	promoter-TSS (NR_003934)	promoter-TSS (NR_003934)	-736	NR_003934	729156	Hs.709878	NR_003934	ENSG00000230583	GTF2IRD1P1	-	GTF2I repeat domain containing 1 pseudogene 1	pseudo
775	chr22	23432469	23436112	+	0	NA	intron (NM_002073, intron 1 of 2)	intron (NM_002073, intron 1 of 2)	21750	NM_002073	2781	Hs.584760	NM_002073	ENSG00000128266	GNAZ	gz-alpha	G protein subunit alpha z	protein-coding
461	chr19	39694067	39695961	+	0	NA	promoter-TSS (NM_001080468)	promoter-TSS (NM_001080468)	-108	NM_001080468	342898	Hs.124123	NM_001080468	ENSG00000179751	SYCN	INSSA1|SYL	syncollin	protein-coding
657	chr10	14877337	14883309	+	0	NA	promoter-TSS (NM_001029954)	promoter-TSS (NM_001029954)	164	NM_016299	51182	Hs.534169	NM_016299	ENSG00000187522	HSPA14	HSP70-4|HSP70L1	heat shock protein family A (Hsp70) member 14	protein-coding
526	chr14	23051211	23074632	+	0	NA	Intergenic	LTR8|LTR|ERV1	-4226	NM_022060	63874	Hs.445665	NM_022060	ENSG00000100439	ABHD4	ABH4	abhydrolase domain containing 4	protein-coding
40	chr1	29056797	29086554	+	0	NA	intron (NM_001172828, intron 3 of 3)	intron (NM_001172828, intron 3 of 3)	8223	NM_001172828	51441	Hs.532286	NM_016258	ENSG00000198492	YTHDF2	CAHL|HGRG8|NY-REN-2	YTH N6-methyladenosine RNA binding protein 2	protein-coding
57	chr5	55287406	55295617	+	0	NA	promoter-TSS (NR_120480)	promoter-TSS (NR_120480)	516	NR_102755	441072	Hs.482141	NR_102755	ENSG00000227908	FLJ31104	-	uncharacterized LOC441072	ncRNA
770	chr6	17905466	17910417	+	0	NA	intron (NM_022113, intron 2 of 38)	L2a|LINE|L2	79913	NM_001105567	63971	Hs.94499	NM_022113	ENSG00000137177	KIF13A	RBKIN|bA500C11.2	kinesin family member 13A	protein-coding
110	chr8	29169415	29172858	+	0	NA	Intergenic	SATR2|Satellite|Satellite	35186	NM_057158	1846	Hs.417962	NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
881	chr19	56183269	56191007	+	0	NA	promoter-TSS (NM_001130071)	promoter-TSS (NM_001130071)	577	NM_001130072	29924	Hs.279953	NM_013333	ENSG00000063245	EPN1	-	epsin 1	protein-coding
842	chr19	17579331	17582091	+	0	NA	promoter-TSS (NM_198580)	promoter-TSS (NM_198580)	-542	NM_198580	376497	Hs.363138	NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP-1|FATP1	solute carrier family 27 member 1	protein-coding
282	chr1	11794318	11803540	+	0	NA	intron (NM_001040195, intron 1 of 3)	intron (NM_001040195, intron 1 of 3)	2787	NM_020350	57085	Hs.464438	NM_020350	ENSG00000177674	AGTRAP	ATRAP	angiotensin II receptor associated protein	protein-coding
661	chr2	219230776	219234182	+	0	NA	exon (NM_001320865, exon 10 of 10)	exon (NM_001320865, exon 10 of 10)	146	NR_110573	101928513	Hs.512386	NR_110573	ENSG00000225062	CATIP-AS1	-	CATIP antisense RNA 1	ncRNA
104	chr4	39526367	39532222	+	0	NA	promoter-TSS (NM_001184701)	promoter-TSS (NM_001184701)	-76	NM_003359	7358	Hs.572518	NM_003359	ENSG00000109814	UGDH	GDH|UDP-GlcDH|UDPGDH|UGD	UDP-glucose 6-dehydrogenase	protein-coding
712	chr17	45943027	45946627	+	0	NA	Intergenic	Intergenic	-11587	NM_199262	80320	Hs.253603	NM_199262	ENSG00000189120	SP6	EPFN|EPIPROFIN|KLF14	Sp6 transcription factor	protein-coding
4	chr3	176741265	176748850	+	0	NA	intron (NM_001321194, intron 15 of 16)	AluJr|SINE|Alu	169215	NM_001321193	79718	Hs.714201	NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	transducin beta like 1 X-linked receptor 1	protein-coding
167	chr12	93978602	93994934	+	0	NA	Intergenic	Intergenic	20466	NM_001270471	8835	Hs.485572	NM_003877	ENSG00000120833	SOCS2	CIS2|Cish2|SOCS-2|SSI-2|SSI2|STATI2	suppressor of cytokine signaling 2	protein-coding
317	chr1	1547352	1553126	+	0	NA	promoter-TSS (NM_080875)	promoter-TSS (NM_080875)	-556	NM_080875	142678	Hs.135805	NM_080875	ENSG00000197530	MIB2	ZZANK1|ZZZ5	mindbomb E3 ubiquitin protein ligase 2	protein-coding
664	chr1	10398434	10401104	+	0	NA	intron (NM_015074, intron 29 of 46)	intron (NM_015074, intron 29 of 46)	40745	NR_125730	103625684		NR_125730	ENSG00000207357	RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA
936	chr1	111456802	111463125	+	0	NA	Intergenic	MLT2F|LTR|ERVL	44241	NM_000560	963	Hs.443057	NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
402	chr19	11069349	11074718	+	0	NA	intron (NM_001128849, intron 1 of 35)	CpG	225	NM_001128849	6597	Hs.327527	NM_003072	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|CSS4|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding
11	chr11	46581208	46584242	+	0	NA	intron (NM_001267782, intron 1 of 19)	AluSx|SINE|Alu	30189	NM_017749	55626	Hs.654644	NM_017749	ENSG00000110497	AMBRA1	DCAF3|WDR94	autophagy and beclin 1 regulator 1	protein-coding
480	chr7	25161497	25167497	+	0	NA	intron (NM_018947, intron 1 of 2)	intron (NM_018947, intron 1 of 2)	483	NM_018947	54205	Hs.437060	NM_018947	ENSG00000172115	CYCS	CYC|HCS|THC4	cytochrome c, somatic	protein-coding
127	chr4	84201878	84208280	+	0	NA	intron (NM_001358921, intron 1 of 6)	intron (NM_001358921, intron 1 of 6)	869	NM_001358921	27235	Hs.144304	NM_015697	ENSG00000173085	COQ2	CL640|COQ10D1|MSA1|PHB:PPT	coenzyme Q2, polyprenyltransferase	protein-coding
632	chr15	38745026	38748481	+	0	NA	intron (NM_173611, intron 1 of 7)	CpG	425	NM_173611	283742	Hs.6799	NM_173611	ENSG00000171262	FAM98B	-	family with sequence similarity 98 member B	protein-coding
581	chr22	23413455	23424088	+	0	NA	intron (NM_002073, intron 1 of 2)	intron (NM_002073, intron 1 of 2)	6231	NM_002073	2781	Hs.584760	NM_002073	ENSG00000128266	GNAZ	gz-alpha	G protein subunit alpha z	protein-coding
579	chr14	103849756	103855045	+	0	NA	exon (NM_001128919, exon 1 of 17)	exon (NM_001128919, exon 1 of 17)	699	NM_001128921	4140	Hs.35828	NM_002376	ENSG00000075413	MARK3	CTAK1|KP78|PAR1A|Par-1a	microtubule affinity regulating kinase 3	protein-coding
243	chr1	8847062	8854974	+	0	NA	intron (NM_001042681, intron 1 of 22)	intron (NM_001042681, intron 1 of 22)	26681	NM_012102	473	Hs.463041	NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
274	chr9	34144396	34164782	+	0	NA	Intergenic	FAM|SINE|Alu	-24414	NR_033243	51271	Hs.268963	NM_016525	ENSG00000165006	UBAP1	NAG20|UAP|UBAP|UBAP-1	ubiquitin associated protein 1	protein-coding
518	chr7	92249485	92278034	+	0	NA	intron (NM_001259, intron 5 of 7)	L1M5|LINE|L1	-44051	NR_109929	257415	Hs.18564	NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
927	chr12	27247309	27248621	+	0	NA	Intergenic	Intergenic	-12510	NM_001080406	728858	Hs.334003	NM_001080406	ENSG00000214700	C12orf71	-	chromosome 12 open reading frame 71	protein-coding
652	chr3	177071639	177081409	+	0	NA	Intergenic	Intergenic	64294	NR_047465	100820709	Hs.518409	NR_047465	ENSG00000203645	LINC00501	-	long intergenic non-protein coding RNA 501	ncRNA
792	chr13	113393377	113396475	+	0	NA	intron (NM_032189, intron 1 of 28)	intron (NM_032189, intron 1 of 28)	14119	NR_109811	100874205	Hs.658692	NR_046661	ENSG00000232684	ATP11A-AS1	-	ATP11A antisense RNA 1	ncRNA
875	chr9	130671619	130683381	+	0	NA	intron (NM_175040, intron 1 of 4)	MIRc|SINE|MIR	1805	NM_175040	27090	Hs.3972	NM_014403	ENSG00000136840	ST6GALNAC4	IV|SIAT3-C|SIAT3C|SIAT7-D|SIAT7D|ST6GALNACIV|ST6GalNAc	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding
278	chr9	80613959	80653397	+	0	NA	intron (NM_002072, intron 1 of 6)	intron (NM_002072, intron 1 of 6)	12687	NM_002072	2776	Hs.269782	NM_002072	ENSG00000156052	GNAQ	CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
956	chr6	13658761	13685937	+	0	NA	intron (NM_005493, intron 2 of 13)	L1MCa|LINE|L1	39447	NM_005493	10048	Hs.708182	NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
656	chr1	93411492	93437907	+	0	NA	intron (NM_001006605, intron 1 of 4)	AluJb|SINE|Alu	2380	NM_001252273	388650	Hs.180946	NM_001006605	ENSG00000154511	FAM69A	-	family with sequence similarity 69 member A	protein-coding
318	chr4	2961474	2967916	+	0	NA	promoter-TSS (NM_005307)	promoter-TSS (NM_005307)	538	NM_003703	8602	Hs.627133	NM_003703	ENSG00000087269	NOP14	C4orf9|NOL14|RES4-25|RES425|UTP2	NOP14 nucleolar protein	protein-coding
252	chr20	58507680	58509913	+	0	NA	promoter-TSS (NM_014258)	promoter-TSS (NM_014258)	-23	NM_001190826	63939	Hs.54973	NM_022106	ENSG00000196227	FAM217B	C20orf177|dJ551D2.5	family with sequence similarity 217 member B	protein-coding
230	chr6	27651586	27658022	+	0	NA	Intergenic	Intergenic	-7010	NR_038294	100507173	Hs.635987	NR_038292	ENSG00000281706	LINC01012	-	long intergenic non-protein coding RNA 1012	ncRNA
341	chr16	29952483	29957533	+	0	NA	Intergenic	LTR19B|LTR|ERV1	-17455	NM_178863	253980	Hs.534590	NM_178863	ENSG00000174943	KCTD13	BACURD1|FKSG86|PDIP1|POLDIP1|hBACURD1	potassium channel tetramerization domain containing 13	protein-coding
834	chr6	15753688	15755536	+	0	NA	Intergenic	MLT2F|LTR|ERVL	-91323	NR_036448	84062	Hs.571148	NM_032122	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
460	chr19	40328391	40339506	+	0	NA	intron (NM_001436, intron 1 of 8)	intron (NM_001436, intron 1 of 8)	3106	NM_001436	2091	Hs.299002	NM_001436	ENSG00000105202	FBL	FIB|FLRN|Nop1|RNU3IP1	fibrillarin	protein-coding
615	chr6	26567356	26579415	+	0	NA	non-coding (NR_134611, exon 2 of 2)	non-coding (NR_134611, exon 2 of 2)	3833	NR_134611	105374988	Hs.551772	NR_134611	ENSG00000284607	LOC105374988	-	uncharacterized LOC105374988	ncRNA
387	chr22	22838649	22849439	+	0	NA	intron (NM_080764, intron 3 of 3)	intron (NM_080764, intron 3 of 3)	19461	NR_130642	140883	Hs.43834	NM_080764	ENSG00000275004	ZNF280B	5'OY11.1|D87009.C22.3|SUHW2|ZNF279|ZNF632	zinc finger protein 280B	protein-coding
880	chr19	47815406	47820393	+	0	NA	intron (NM_001736, intron 1 of 1)	AluSx|SINE|Alu	4795	NM_001736	728	Hs.2161	NM_001736	ENSG00000197405	C5AR1	C5A|C5AR|C5R1|CD88	complement C5a receptor 1	protein-coding
74	chr17	76731710	76734226	+	0	NA	intron (NM_017456, intron 1 of 12)	intron (NM_017456, intron 1 of 12)	-13136	NM_001292018	9267	Hs.191215	NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
573	chr3	12757574	12759217	+	0	NA	Intergenic	Intergenic	42413	NM_018306	55287	Hs.475502	NM_018306	ENSG00000088726	TMEM40	-	transmembrane protein 40	protein-coding
922	chr1	161184001	161185937	+	0	NA	promoter-TSS (NM_004106)	promoter-TSS (NM_004106)	-118	NM_004106	2207	Hs.433300	NM_004106	ENSG00000158869	FCER1G	FCRG	Fc fragment of IgE receptor Ig	protein-coding
887	chr11	62603374	62612138	+	0	NA	promoter-TSS (NM_001307977)	promoter-TSS (NM_001307977)	-128	NM_018093	54663	Hs.654620	NM_018093	ENSG00000133316	WDR74	-	WD repeat domain 74	protein-coding
935	chr6	26165056	26177230	+	0	NA	intron (NM_138720, intron 1 of 1)	intron (NM_138720, intron 1 of 1)	12794	NM_021063	3017	Hs.591797	NM_021063	ENSG00000158373	HIST1H2BD	H2B.1B|H2B/b|H2BFB|HIRIP2|dJ221C16.6	histone cluster 1 H2B family member d	protein-coding
42	chr1	2572226	2575679	+	0	NA	intron (NM_001242672, intron 6 of 6)	intron (NM_001242672, intron 6 of 6)	-9471	NM_033467	79258	Hs.591453	NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
177	chr3	14875306	14880554	+	0	NA	intron (NM_152536, intron 1 of 19)	intron (NM_152536, intron 1 of 19)	17461	NM_152536	152273	Hs.412406	NM_152536	ENSG00000154783	FGD5	ZFYVE23	FYVE, RhoGEF and PH domain containing 5	protein-coding
918	chr22	30699647	30702592	+	0	NA	intron (NM_001204240, intron 1 of 8)	L2c|LINE|L2	-15503	NM_001037666	652968	Hs.444950	NM_001037666	ENSG00000239282	CASTOR1	GATSL3	cytosolic arginine sensor for mTORC1 subunit 1	protein-coding
840	chr20	3746043	3751132	+	0	NA	promoter-TSS (NM_001258430)	promoter-TSS (NM_001258430)	-135	NM_001258429	54976	Hs.274422	NM_017874	ENSG00000101220	C20orf27	-	chromosome 20 open reading frame 27	protein-coding
478	chr10	104613035	104616791	+	0	NA	intron (NM_144591, intron 1 of 5)	AluSg|SINE|Alu	946	NM_001136200	119032	Hs.34492	NM_144591	ENSG00000166275	BORCS7	C10orf32	BLOC-1 related complex subunit 7	protein-coding
382	chr12	104915750	104918941	+	0	NA	intron (NM_018413, intron 1 of 2)	MIRc|SINE|MIR	66653	NM_018413	50515	Hs.17569	NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537	carbohydrate sulfotransferase 11	protein-coding
54	chr10	7147955	7150765	+	0	NA	Intergenic	Intergenic	79386	NR_132972	106635547		NR_132972		SNORD129	-	small nucleolar RNA, C/D box 129	snoRNA
863	chr3	47202301	47209112	+	0	NA	promoter-TSS (NR_146158)	promoter-TSS (NR_146158)	-154	NR_033373	285352	Hs.570631	NR_033373		KIF9-AS1	-	KIF9 antisense RNA 1	ncRNA
833	chr5	76084909	76087727	+	0	NA	Intergenic	Intergenic	-28484	NM_005242	2150	Hs.744181	NM_005242	ENSG00000164251	F2RL1	GPR11|PAR2	F2R like trypsin receptor 1	protein-coding
300	chr1	198123689	198133424	+	0	NA	intron (NM_133494, intron 1 of 9)	intron (NM_133494, intron 1 of 9)	2448	NM_133494	140609	Hs.24119	NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
967	chr8	38874503	38875654	+	0	NA	intron (NR_027639, intron 6 of 19)	L2c|LINE|L2	1126	NR_145988	109616979		NR_145736	ENSG00000207199	SNORD38D	-	small nucleolar RNA, C/D box 38D	snoRNA
361	chr14	93670577	93676492	+	0	NA	promoter-TSS (NM_032490)	promoter-TSS (NM_032490)	-75	NM_032490	84520	Hs.20142	NM_032490	ENSG00000170270	GON7	C14orf142|PNAS-127	GON7, KEOPS complex subunit	protein-coding
527	chr19	48899044	48905750	+	0	NA	intron (NM_000836, intron 2 of 12)	intron (NM_000836, intron 2 of 12)	4265	NM_000836	2906	Hs.445015	NM_000836	ENSG00000105464	GRIN2D	EB11|EIEE46|GluN2D|NMDAR2D|NR2D	glutamate ionotropic receptor NMDA type subunit 2D	protein-coding
728	chr19	35756558	35761043	+	0	NA	TTS (NM_205835)	TTS (NM_205835)	-1081	NM_001321150	7392	Hs.454534	NM_003367	ENSG00000105698	USF2	FIP|bHLHb12	upstream transcription factor 2, c-fos interacting	protein-coding
148	chr22	19868853	19870910	+	0	NA	intron (NM_006440, intron 12 of 17)	AluSz|SINE|Alu	-27419	NM_053004	54584	Hs.105642	NM_053004	ENSG00000185838	GNB1L	DGCRK3|FKSG1|GY2|WDR14|WDVCF	G protein subunit beta 1 like	protein-coding
295	chr8	146009243	146032107	+	0	NA	Intergenic	AluSg4|SINE|Alu	-2844	NM_000973	6132	Hs.178551	NM_000973	ENSG00000161016	RPL8	L8	ribosomal protein L8	protein-coding
470	chr16	3178231	3187529	+	0	NA	non-coding (NR_110900, exon 2 of 6)	non-coding (NR_110900, exon 2 of 6)	2003	NR_110900	100507458	Hs.522143	NR_110900		ZNF213-AS1	-	ZNF213 antisense RNA 1 (head to head)	ncRNA
997	chr1	248069058	248071672	+	0	NA	Intergenic	(TTTC)n|Simple_repeat|Simple_repeat	11476	NM_001001957	343171	Hs.269151	NM_001001957	ENSG00000238243	OR2W3	OR2W3P|OR2W8P|OST718	olfactory receptor family 2 subfamily W member 3	protein-coding
427	chr22	23144254	23146242	+	0	NA	Intergenic	Intergenic	-20022	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
125	chr3	101497191	101498818	+	0	NA	promoter-TSS (NM_145037)	promoter-TSS (NM_145037)	-17	NM_001348997	91775	Hs.595933	NM_145037	ENSG00000144815	NXPE3	FAM55C|MST115|MSTP115	neurexophilin and PC-esterase domain family member 3	protein-coding
605	chr12	51439729	51444964	+	0	NA	non-coding (NR_147100, exon 1 of 7)	non-coding (NR_147100, exon 1 of 7)	264	NM_001351323	25875	Hs.655272	NM_015416	ENSG00000050426	LETMD1	1110019O13Rik|HCCR|HCCR-1|HCCR-2|HCCR1|HCCR2|HCRR-2|SLC55A3	LETM1 domain containing 1	protein-coding
339	chr9	101804063	101850426	+	0	NA	intron (NM_001855, intron 39 of 41)	L1ME4a|LINE|L1	-40127	NM_004612	7046	Hs.494622	NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
618	chr16	69370838	69376780	+	0	NA	promoter-TSS (NM_032382)	promoter-TSS (NM_032382)	-283	NM_032382	84342	Hs.130849	NM_032382	ENSG00000272617	COG8	CDG2H|DOR1	component of oligomeric golgi complex 8	protein-coding
287	chr19	47351056	47355877	+	0	NA	promoter-TSS (NM_001301076)	promoter-TSS (NM_001301076)	81	NM_001301076	1175	Hs.119591	NM_004069	ENSG00000042753	AP2S1	AP17|CLAPS2|FBH3|FBHOk|HHC3	adaptor related protein complex 2 subunit sigma 1	protein-coding
987	chr3	5465578	5475789	+	0	NA	Intergenic	Intergenic	-178743	NR_039953	100616334		NR_039953	ENSG00000265180	MIR4790	-	microRNA 4790	ncRNA
779	chr3	194349844	194356198	+	0	NA	intron (NM_001011655, intron 1 of 9)	intron (NM_001011655, intron 1 of 9)	1129	NM_138399	93109	Hs.478729	NM_138399	ENSG00000145014	TMEM44	-	transmembrane protein 44	protein-coding
743	chr11	72030712	72034388	+	0	NA	intron (NM_030813, intron 7 of 16)	intron (NM_030813, intron 7 of 16)	-77330	NM_005169	401	Hs.731115	NM_005169	ENSG00000165462	PHOX2A	ARIX|CFEOM2|FEOM2|NCAM2|PMX2A	paired like homeobox 2a	protein-coding
623	chr19	36246521	36251449	+	0	NA	promoter-TSS (NM_001039887)	promoter-TSS (NM_001039887)	-59	NM_001039887	148137	Hs.527982	NM_144692	ENSG00000167595	PROSER3	C19orf55	proline and serine rich 3	protein-coding
497	chr10	5445282	5448029	+	0	NA	intron (NM_024803, intron 1 of 3)	intron (NM_024803, intron 1 of 3)	138	NM_024803	79861	Hs.163079	NM_024803	ENSG00000178462	TUBAL3	-	tubulin alpha like 3	protein-coding
313	chr2	242785670	242788601	+	0	NA	Intergenic	CpG	13923	NM_005018	5133	Hs.158297	NM_005018	ENSG00000188389	PDCD1	CD279|PD-1|PD1|SLEB2|hPD-1|hPD-l|hSLE1	programmed cell death 1	protein-coding
415	chr3	25817378	25839582	+	0	NA	intron (NM_001145294, intron 1 of 11)	L2c|LINE|L2	3050	NM_001145294	55768	Hs.368960	NM_018297	ENSG00000151092	NGLY1	CDDG|CDG1V|PNG1|PNGase	N-glycanase 1	protein-coding
340	chr16	708779	713181	+	0	NA	intron (NM_145294, intron 28 of 40)	C-rich|Low_complexity|Low_complexity	-7103	NM_001352291	89941	Hs.513242	NM_138769	ENSG00000140983	RHOT2	ARHT2|C16orf39|MIRO-2|MIRO2|RASL	ras homolog family member T2	protein-coding
760	chr11	65133368	65135454	+	0	NA	Intergenic	AluJo|SINE|Alu	12129	NM_145719	220359	Hs.632121	NM_145719	ENSG00000173825	TIGD3	-	tigger transposable element derived 3	protein-coding
338	chr15	76625917	76632991	+	0	NA	intron (NM_145805, intron 1 of 5)	intron (NM_145805, intron 1 of 5)	389	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
182	chr18	57716929	57723566	+	0	NA	Intergenic	Intergenic	153055	NM_021127	5366	Hs.96	NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
329	chr6	150324830	150327914	+	0	NA	promoter-TSS (NR_024045)	promoter-TSS (NR_024045)	-92	NR_024045	646024	Hs.560537	NR_024045	ENSG00000218358	RAET1K	-	retinoic acid early transcript 1K pseudogene	pseudo
78	chr21	36693518	36722679	+	0	NA	Intergenic	Intergenic	244964	NR_073512	100506403	Hs.536609	NR_073512	ENSG00000159216	LOC100506403	-	uncharacterized LOC100506403	ncRNA
752	chr19	6575087	6578807	+	0	NA	Intergenic	LTR7C|LTR|ERV1	14216	NM_001252	970	Hs.501497	NM_001252	ENSG00000125726	CD70	CD27-L|CD27L|CD27LG|TNFSF7|TNLG8A	CD70 molecule	protein-coding
487	chr2	113678741	113683408	+	0	NA	Intergenic	Intergenic	8304	NM_173205	27178	Hs.166371	NM_014439	ENSG00000125571	IL37	FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1	interleukin 37	protein-coding
902	chr1	12134575	12143175	+	0	NA	intron (NM_001281430, intron 1 of 13)	intron (NM_001281430, intron 1 of 13)	15441	NM_001243	943	Hs.1314	NM_001243	ENSG00000120949	TNFRSF8	CD30|D1S166E|Ki-1	TNF receptor superfamily member 8	protein-coding
508	chr12	49243056	49248977	+	0	NA	promoter-TSS (NM_004818)	promoter-TSS (NM_004818)	-59	NM_004818	9416	Hs.130098	NM_004818	ENSG00000174243	DDX23	PRPF28|SNRNP100|U5-100K|U5-100KD|prp28	DEAD-box helicase 23	protein-coding
639	chr19	10408233	10418405	+	0	NA	Intergenic	AluSx|SINE|Alu	6914	NM_001103167	100125288	Hs.709296	NM_001103167	ENSG00000220201	ZGLP1	GATAD3|GLP-1|GLP1	zinc finger, GATA-like protein 1	protein-coding
277	chr6	15283447	15315152	+	0	NA	intron (NM_001267040, intron 1 of 17)	intron (NM_001267040, intron 1 of 17)	50213	NM_001267040	3720	Hs.269059	NM_004973	ENSG00000008083	JARID2	JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
696	chr10	82243465	82249809	+	0	NA	intron (NM_001351266, intron 2 of 9)	intron (NM_001351266, intron 2 of 9)	18618	NM_001351271	81619	Hs.718943	NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14	tetraspanin 14	protein-coding
116	chr21	35573251	35576528	+	0	NA	Intergenic	Intergenic	21911	NR_027266	114036	Hs.720230	NM_153751	ENSG00000227456	LINC00310	C21orf82|NCRNA00310	long intergenic non-protein coding RNA 310	ncRNA
205	chr2	68663556	68670395	+	0	NA	Intergenic	Intergenic	27474	NM_001024680	554251	Hs.164117	NM_001024680	ENSG00000204923	FBXO48	-	F-box protein 48	protein-coding
597	chr8	126552418	126554371	+	0	NA	Intergenic	Intergenic	108943	NM_001282985	10221	Hs.444947	NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
847	chr3	186498691	186511504	+	0	NA	promoter-TSS (NR_002586)	promoter-TSS (NR_002586)	9	NR_002586	6043	Hs.518475	NR_002586	ENSG00000200320	SNORA63	E3|E3-2|RNE3|RNU107|SNORA63A|elF-4AII	small nucleolar RNA, H/ACA box 63	snoRNA
266	chr19	14535316	14537654	+	0	NA	Intergenic	Intergenic	-6290	NR_046366	10212	Hs.311609	NM_005804	ENSG00000123136	DDX39A	BAT1|BAT1L|DDX39|DDXL|URH49	DExD-box helicase 39A	protein-coding
574	chr7	65234268	65237559	+	0	NA	promoter-TSS (NR_038378)	promoter-TSS (NR_038378)	-116	NR_038378	441242	Hs.373941	NM_001013464	ENSG00000272693	LOC441242	-	uncharacterized LOC441242	ncRNA
930	chr1	65902101	65904817	+	0	NA	intron (NM_001003679, intron 2 of 19)	L2a|LINE|L2	17060	NM_001198681	54741	Hs.23581	NM_017526	ENSG00000213625	LEPROT	LEPR|OB-RGRP|OBRGRP|VPS55	leptin receptor overlapping transcript	protein-coding
950	chr18	2515818	2517089	+	0	NA	Intergenic	Intergenic	55049	NM_001308401	64863	Hs.126888	NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase like 4	protein-coding
101	chr2	11269183	11274511	+	0	NA	intron (NR_040080, intron 1 of 8)	intron (NR_040080, intron 1 of 8)	455	NR_040080	285150	Hs.329841	NM_182586	ENSG00000145063	FLJ33534	-	uncharacterized LOC285150	ncRNA
931	chr16	31722914	31727765	+	0	NA	intron (NM_001130913, intron 1 of 4)	intron (NM_001130913, intron 1 of 4)	789	NM_001130913	124411	Hs.528826	NM_001004300	ENSG00000197302	ZNF720	-	zinc finger protein 720	protein-coding
501	chr9	33451385	33455146	+	0	NA	Intergenic	Intergenic	-5634	NM_001318144	360	Hs.234642	NM_004925	ENSG00000165272	AQP3	AQP-3|GIL	aquaporin 3 (Gill blood group)	protein-coding
676	chr1	161355526	161361273	+	0	NA	Intergenic	AluSg|SINE|Alu	-20726	NM_001013625	257177	Hs.534593	NM_001013625	ENSG00000188931	CFAP126	C1orf192|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding
494	chr17	76178582	76185975	+	0	NA	intron (NM_003258, intron 2 of 6)	AluJr|SINE|Alu	1007	NM_003258	7083	Hs.515122	NM_003258	ENSG00000167900	TK1	TK2	thymidine kinase 1	protein-coding
81	chr1	28380637	28387475	+	0	NA	intron (NM_001990, intron 2 of 17)	AT_rich|Low_complexity|Low_complexity	31092	NM_001990	2140	Hs.185774	NM_001990	ENSG00000158161	EYA3	-	EYA transcriptional coactivator and phosphatase 3	protein-coding
379	chr1	155900889	155906523	+	0	NA	intron (NM_014949, intron 1 of 13)	intron (NM_014949, intron 1 of 13)	527	NM_014949	22889	Hs.24656	NM_014949	ENSG00000132680	KHDC4	BLOM7|KIAA0907|SNORA80EHG	KH domain containing 4, pre-mRNA splicing factor	protein-coding
975	chr20	37359374	37360614	+	0	NA	Intergenic	Intergenic	6889	NM_080552	140679	Hs.179080	NM_080552	ENSG00000101438	SLC32A1	VGAT|VIAAT	solute carrier family 32 member 1	protein-coding
529	chr16	69754847	69764088	+	0	NA	intron (NM_000903, intron 1 of 5)	intron (NM_000903, intron 1 of 5)	1066	NM_000903	1728	Hs.406515	NM_000903	ENSG00000181019	NQO1	DHQU|DIA4|DTD|NMOR1|NMORI|QR1	NAD(P)H quinone dehydrogenase 1	protein-coding
195	chr2	10698329	10701623	+	0	NA	Intergenic	Intergenic	110122	NR_110597	101929715	Hs.634550	NR_110597		LOC101929715	-	uncharacterized LOC101929715	ncRNA
84	chr12	112274234	112286280	+	0	NA	promoter-TSS (NR_152607)	promoter-TSS (NR_152607)	225	NM_139078	8550	Hs.333120	NM_003668	ENSG00000089022	MAPKAPK5	MAPKAP-K5|MK-5|MK5|PRAK	mitogen-activated protein kinase-activated protein kinase 5	protein-coding
368	chr19	51566211	51570049	+	0	NA	promoter-TSS (NR_145467)	promoter-TSS (NR_145467)	11	NR_145466	26085	Hs.165296	NM_015596	ENSG00000167759	KLK13	KLK-L4|KLKL4	kallikrein related peptidase 13	protein-coding
426	chr19	55537018	55541655	+	0	NA	intron (NM_016363, intron 3 of 7)	intron (NM_016363, intron 3 of 7)	10296	NM_001083899	51206	Hs.661752	NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
413	chr13	81164818	81175179	+	0	NA	Intergenic	Intergenic	-254748	NM_005842	10253	Hs.18676	NM_005842	ENSG00000136158	SPRY2	IGAN3|hSPRY2	sprouty RTK signaling antagonist 2	protein-coding
150	chr1	207079603	207082047	+	0	NA	intron (NM_001142473, intron 6 of 6)	intron (NM_001142473, intron 6 of 6)	10037	NM_006850	11009	Hs.58831	NM_006850	ENSG00000162892	IL24	C49A|FISP|IL10B|MDA7|MOB5|ST16	interleukin 24	protein-coding
159	chr14	91575190	91577002	+	0	NA	intron (NM_001358312, intron 1 of 13)	MLT1A|LTR|ERVL-MaLR	-4261	NM_001286472	80017	Hs.309849	NM_024952	ENSG00000133943	DGLUCY	C14orf159	D-glutamate cyclase	protein-coding
1	chr22	38680610	38682339	+	0	NA	Intergenic	Intergenic	-12434	NM_012264	25829	Hs.182626	NM_012264	ENSG00000198792	TMEM184B	C22orf5|FM08|HS5O6A|HSPC256	transmembrane protein 184B	protein-coding
596	chr2	12414003	12431313	+	0	NA	intron (NR_110196, intron 3 of 5)	Charlie7|DNA|hAT-Charlie	83402	NR_037452	100500884		NR_037452	ENSG00000264089	MIR3681	-	microRNA 3681	ncRNA
175	chr11	108603424	108607345	+	0	NA	intron (NM_004398, intron 13 of 17)	intron (NM_004398, intron 13 of 17)	69632	NM_004398	1662	Hs.591931	NM_004398	ENSG00000178105	DDX10	Dbp4|HRH-J8	DEAD-box helicase 10	protein-coding
719	chr3	17719972	17721689	+	0	NA	intron (NM_001134381, intron 1 of 23)	intron (NM_001134381, intron 1 of 23)	20682	NM_001134381	9779	Hs.475629	NM_014744	ENSG00000131374	TBC1D5	-	TBC1 domain family member 5	protein-coding
899	chr3	6684919	6686664	+	0	NA	intron (NR_110123, intron 2 of 3)	MER44A|DNA|TcMar-Tigger	161345	NR_110125	101927347	Hs.333345	NR_110123	ENSG00000226258	GRM7-AS3	-	GRM7 antisense RNA 3	ncRNA
585	chr16	3505771	3511863	+	0	NA	intron (NM_001317095, intron 1 of 5)	intron (NM_001317095, intron 1 of 5)	832	NM_001317095	79903	Hs.513296	NM_024845	ENSG00000122390	NAA60	HAT4|NAT15|NatF|hNaa60	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding
439	chr3	47819256	47826492	+	0	NA	intron (NM_003074, intron 1 of 27)	intron (NM_003074, intron 1 of 27)	531	NM_003074	6599	Hs.476179	NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|Rsc8|SRG3|SWI3	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1	protein-coding
372	chr4	48235543	48238520	+	0	NA	intron (NM_003215, intron 1 of 17)	LTR54B|LTR|ERV1	34783	NM_003215	7006	Hs.479670	NM_003215	ENSG00000135605	TEC	PSCTK4	tec protein tyrosine kinase	protein-coding
687	chr11	76374030	76376983	+	0	NA	intron (NM_001128922, intron 2 of 2)	intron (NM_001128922, intron 2 of 2)	5538	NM_005512	2615	Hs.151641	NM_005512	ENSG00000137507	LRRC32	D11S833E|GARP	leucine rich repeat containing 32	protein-coding
703	chr6	15497223	15504305	+	0	NA	intron (NM_004973, intron 7 of 17)	intron (NM_004973, intron 7 of 17)	162525	NM_032122	84062	Hs.571148	NM_032122	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
612	chr21	40748273	40755101	+	0	NA	promoter-TSS (NM_001350296)	promoter-TSS (NM_001350296)	-483	NM_001350300	106865373	Hs.473847	NM_001317744		WRB-SH3BGR	-	WRB-SH3BGR readthrough	protein-coding
95	chrX	37612826	37616164	+	0	NA	Intergenic	L2c|LINE|L2	-24775	NM_000397	1536	Hs.292356	NM_000397	ENSG00000165168	CYBB	AMCBX2|CGD|GP91-1|GP91-PHOX|GP91PHOX|IMD34|NOX2|p91-PHOX	cytochrome b-245 beta chain	protein-coding
516	chr11	118912299	118913624	+	0	NA	Intergenic	L1MC1|LINE|L1	-11345	NM_001467	2542	Hs.719203	NM_001467	ENSG00000137700	SLC37A4	G6PT1|G6PT2|G6PT3|GSD1b|GSD1c|GSD1d|PRO0685|TRG-19|TRG19	solute carrier family 37 member 4	protein-coding
432	chr11	94832388	94846633	+	0	NA	intron (NM_015036, intron 1 of 1)	intron (NM_015036, intron 1 of 1)	16536	NM_015036	23052	Hs.167115	NM_015036	ENSG00000149218	ENDOD1	-	endonuclease domain containing 1	protein-coding
250	chr2	85671528	85677542	+	0	NA	Intergenic	Intergenic	28481	NM_201594	284948	Hs.209542	NM_198482	ENSG00000152292	SH2D6	-	SH2 domain containing 6	protein-coding
14	chr6	27054785	27056740	+	0	NA	Intergenic	AluSq|SINE|Alu	44813	NM_021058	8970	Hs.591807	NM_021058	ENSG00000124635	HIST1H2BJ	H2B/r|H2BFR|H2BJ	histone cluster 1 H2B family member j	protein-coding
602	chr22	23386151	23387986	+	0	NA	Intergenic	MER57-int|LTR|ERV1	-25472	NM_002073	2781	Hs.584760	NM_002073	ENSG00000128266	GNAZ	gz-alpha	G protein subunit alpha z	protein-coding
852	chr1	1366597	1372109	+	0	NA	intron (NR_125994, intron 1 of 1)	intron (NR_125994, intron 1 of 1)	600	NR_125996	102724312		NR_125994		LINC01770	-	long intergenic non-protein coding RNA 1770	ncRNA
785	chr11	65694209	65697538	+	0	NA	Intergenic	AluSz|SINE|Alu	9145	NM_006442	10589	Hs.356742	NM_006442	ENSG00000175550	DRAP1	NC2-alpha	DR1 associated protein 1	protein-coding
174	chr15	85309308	85310796	+	0	NA	intron (NM_014630, intron 2 of 10)	intron (NM_014630, intron 2 of 10)	18234	NM_014630	9640	Hs.79347	NM_014630	ENSG00000166716	ZNF592	CAMOS|SCAR5	zinc finger protein 592	protein-coding
151	chr7	5083862	5087457	+	0	NA	5' UTR (NM_021163, exon 1 of 5)	5' UTR (NM_021163, exon 1 of 5)	106	NM_021163	57786	Hs.396178	NM_021163	ENSG00000146587	RBAK	ZNF769	RB associated KRAB zinc finger	protein-coding
966	chr20	32689719	32706732	+	0	NA	intron (NM_003908, intron 1 of 8)	MIR3|SINE|MIR	1937	NM_001316363	8894	Hs.429180	NM_003908	ENSG00000125977	EIF2S2	EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta	eukaryotic translation initiation factor 2 subunit beta	protein-coding
397	chr14	31734599	31735811	+	0	NA	Intergenic	Intergenic	-58476	NM_015382	25831	Hs.708017	NM_015382	ENSG00000092148	HECTD1	EULIR	HECT domain E3 ubiquitin protein ligase 1	protein-coding
376	chr20	49156217	49159300	+	0	NA	intron (NM_001278618, intron 1 of 8)	intron (NM_001278618, intron 1 of 8)	30900	NM_001278618	5770	Hs.417549	NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding
636	chr5	34006022	34009846	+	0	NA	exon (NM_014324, exon 1 of 5)	exon (NM_014324, exon 1 of 5)	286	NM_001167595	23600	Hs.508343	NM_014324	ENSG00000242110	AMACR	AMACRD|CBAS4|P504S|RACE|RM	alpha-methylacyl-CoA racemase	protein-coding
595	chr20	50103266	50111863	+	0	NA	intron (NM_001258296, intron 3 of 10)	intron (NM_001258296, intron 3 of 10)	-38050	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
776	chr4	1851660	1861308	+	0	NA	intron (NM_012318, intron 1 of 13)	AluSx|SINE|Alu	1490	NM_012318	3954	Hs.120165	NM_012318	ENSG00000168924	LETM1	SLC55A1	leucine zipper and EF-hand containing transmembrane protein 1	protein-coding
937	chr19	4864980	4872100	+	0	NA	promoter-TSS (NM_001164189)	promoter-TSS (NM_001164189)	-760	NM_001164194	10226	Hs.140452	NM_005817	ENSG00000105355	PLIN3	M6PRBP1|PP17|TIP47	perilipin 3	protein-coding
606	chr3	156861734	156885195	+	0	NA	intron (NM_020307, intron 3 of 10)	intron (NM_020307, intron 3 of 10)	5085	NM_001308185	57018	Hs.4859	NM_020307	ENSG00000163660	CCNL1	ANIA6A|BM-001|PRO1073|ania-6a	cyclin L1	protein-coding
32	chr3	47864376	47871384	+	0	NA	intron (NM_014966, intron 5 of 22)	intron (NM_014966, intron 5 of 22)	-23165	NR_031595	100302232		NR_031595	ENSG00000221585	MIR1226	MIRN1226|hsa-mir-1226|mir-1226	microRNA 1226	ncRNA
246	chrX	130879038	130881721	+	0	NA	intron (NR_026975, intron 10 of 12)	intron (NR_026975, intron 10 of 12)	84292	NR_152876	286467	Hs.720385	NR_026975	ENSG00000213468	FIRRE	LINC01200	firre intergenic repeating RNA element	ncRNA
218	chr11	65458762	65461672	+	0	NA	Intergenic	Intergenic	-19256	NM_182709	10524	Hs.397010	NM_006388	ENSG00000172977	KAT5	ESA1|HTATIP|HTATIP1|PLIP|TIP|TIP60|ZC2HC5|cPLA2	lysine acetyltransferase 5	protein-coding
337	chr11	67228710	67238479	+	0	NA	intron (NR_073412, intron 4 of 6)	AluSx|SINE|Alu	3154	NR_073413	80194	Hs.288761	NM_025124	ENSG00000172663	TMEM134	-	transmembrane protein 134	protein-coding
876	chr6	43927672	43942949	+	0	NA	Intergenic	Intergenic	-33027	NM_001171992	221416	Hs.531926	NM_153246	ENSG00000181577	C6orf223	-	chromosome 6 open reading frame 223	protein-coding
100	chr18	666712	696274	+	0	NA	intron (NR_148711, intron 9 of 14)	intron (NR_148711, intron 9 of 14)	-23153	NM_001012716	494514	Hs.274959	NM_001012716		TYMSOS	C18orf56	TYMS opposite strand	protein-coding
358	chr20	56947047	56950742	+	0	NA	Intergenic	Intergenic	-15281	NR_036633	9217	Hs.182625	NM_004738	ENSG00000124164	VAPB	ALS8|VAMP-B|VAP-B	VAMP associated protein B and C	protein-coding
753	chr12	114363618	114377735	+	0	NA	intron (NM_016196, intron 16 of 23)	intron (NM_016196, intron 16 of 23)	33500	NM_016196	9904	Hs.7482	NM_016196	ENSG00000122965	RBM19	Mrd1	RNA binding motif protein 19	protein-coding
244	chr2	190442691	190451319	+	0	NA	Intergenic	Intergenic	-1468	NM_014585	30061	Hs.643005	NM_014585	ENSG00000138449	SLC40A1	FPN1|HFE4|IREG1|MST079|MSTP079|MTP1|SLC11A3	solute carrier family 40 member 1	protein-coding
24	chr1	32685097	32691905	+	0	NA	promoter-TSS (NR_133635)	promoter-TSS (NR_133635)	-529	NR_133635	56063	Hs.272299	NM_019118	ENSG00000160055	TMEM234	AASL548|C1orf91|PRO1105|RP4-622L5|dJ622L5.7	transmembrane protein 234	protein-coding
512	chr15	64113397	64115008	+	0	NA	intron (NM_003922, intron 1 of 77)	L2a|LINE|L2	11945	NM_003922	8925	Hs.210385	NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
552	chr22	22412090	22419621	+	0	NA	Intergenic	Intergenic	-17523	NR_135291	649179	Hs.553939	NR_135291	ENSG00000197549	PRAMENP	PRAMEF24P|PRAMEL	PRAME N-terminal-like, pseudogene	pseudo
540	chr16	57093588	57097713	+	0	NA	intron (NM_032206, intron 31 of 47)	intron (NM_032206, intron 31 of 47)	-30805	NM_152727	221184	Hs.339809	NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
448	chr11	62617467	62633930	+	0	NA	intron (NM_001012664, intron 1 of 9)	MER102b|DNA|hAT-Charlie	2214	NM_001012662	6520	Hs.502769	NM_002394	ENSG00000168003	SLC3A2	4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE	solute carrier family 3 member 2	protein-coding
629	chr5	149670852	149675682	+	0	NA	Intergenic	Intergenic	-3864	NM_015981	815	Hs.743976	NM_015981	ENSG00000070808	CAMK2A	CAMKA|MRD53	calcium/calmodulin dependent protein kinase II alpha	protein-coding
991	chr17	56427651	56433859	+	0	NA	non-coding (NR_038410, exon 5 of 5)	non-coding (NR_038410, exon 5 of 5)	-1156	NR_073470	6827	Hs.439481	NM_003168	ENSG00000213246	SUPT4H1	SPT4|SPT4H|SUPT4H|Supt4a	SPT4 homolog, DSIF elongation factor subunit	protein-coding
34	chr11	77488414	77490316	+	0	NA	intron (NM_016578, intron 1 of 15)	intron (NM_016578, intron 1 of 15)	42515	NM_016578	51773	Hs.420229	NM_016578	ENSG00000048649	RSF1	HBXAP|RSF-1|XAP8|p325	remodeling and spacing factor 1	protein-coding
735	chr7	7029165	7032778	+	0	NA	Intergenic	HERVS71-int|LTR|ERV1	75705	NR_037454	100500886		NR_037454	ENSG00000266287	MIR3683	-	microRNA 3683	ncRNA
355	chr17	40565360	40569915	+	0	NA	intron (NM_012232, intron 1 of 1)	AluJb|SINE|Alu	7701	NM_012232	284119	Hs.437191	NM_012232	ENSG00000177469	CAVIN1	CAVIN|CGL4|FKSG13|PTRF|cavin-1	caveolae associated protein 1	protein-coding
186	chr12	112031348	112040110	+	0	NA	intron (NM_001310121, intron 1 of 25)	CpG	-1573	NR_146497	102723619	Hs.569200	NR_146497	ENSG00000258099	ATXN2-AS	-	ATXN2 antisense RNA	ncRNA
360	chr8	134540194	134564521	+	0	NA	intron (NM_003033, intron 2 of 8)	intron (NM_003033, intron 2 of 8)	31826	NM_173344	6482	Hs.374257	NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
431	chr16	68020494	68022101	+	0	NA	TTS (NM_022355)	TTS (NM_022355)	-6845	NM_001129758	64180	Hs.302028	NM_022357	ENSG00000141096	DPEP3	MBD3	dipeptidase 3	protein-coding
207	chr19	4789928	4794386	+	0	NA	exon (NM_018708, exon 1 of 1)	exon (NM_018708, exon 1 of 1)	429	NM_018708	55527	Hs.515082	NM_018708	ENSG00000141965	FEM1A	EPRAP	fem-1 homolog A	protein-coding
873	chr13	21336189	21360153	+	0	NA	promoter-TSS (NM_174928)	promoter-TSS (NM_174928)	-74	NM_174928	221143	Hs.26674	NM_174928	ENSG00000150456	EEF1AKMT1	ESP13|N6AMT2	EEF1A lysine methyltransferase 1	protein-coding
139	chr20	62884758	62890014	+	0	NA	intron (NM_018257, intron 1 of 5)	CpG	338	NM_001104925	55251	Hs.744845	NM_018257	ENSG00000203880	PCMTD2	C20orf36	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2	protein-coding
690	chr13	99795734	99798109	+	0	NA	Intergenic	Intergenic	-55758	NM_001144072	337867	Hs.508545	NM_177967	ENSG00000134882	UBAC2	PHGDHL1	UBA domain containing 2	protein-coding
39	chr9	137028150	137032031	+	0	NA	promoter-TSS (NR_023344)	promoter-TSS (NR_023344)	-404	NR_023344	100151684	Hs.545589	NR_023344	ENSG00000221676	RNU6ATAC	RNU6ATAC1|U6ATAC	RNA, U6atac small nuclear (U12-dependent splicing)	snRNA
38	chr8	105625763	105638344	+	0	NA	Intergenic	Intergenic	-30801	NM_013437	29967	Hs.600630	NM_013437	ENSG00000147650	LRP12	ST7	LDL receptor related protein 12	protein-coding
249	chr17	41304514	41307438	+	0	NA	TTS (NR_138145)	TTS (NR_138145)	16444	NR_110868	101929767	Hs.640892	NR_110868		LOC101929767	-	uncharacterized LOC101929767	ncRNA
906	chr18	77791536	77798822	+	0	NA	intron (NM_024805, intron 1 of 6)	L1MC3|LINE|L1	833	NM_001171967	79863	Hs.728931	NM_024805	ENSG00000101546	RBFA	C18orf22|HsT169	ribosome binding factor A	protein-coding
133	chr11	69194262	69201217	+	0	NA	Intergenic	Intergenic	-42700	NM_001319657	102724265	Hs.448669	NM_001319657		LOC102724265	-	uncharacterized LOC102724265	protein-coding
258	chr10	70980929	70984102	+	0	NA	intron (NM_025130, intron 1 of 17)	intron (NM_025130, intron 1 of 17)	2456	NM_025130	80201	Hs.522988	NM_025130	ENSG00000156510	HKDC1	-	hexokinase domain containing 1	protein-coding
53	chr1	222637419	222640397	+	0	NA	Intergenic	CpG	82536	NM_024746	79802	Hs.665660	NM_024746	ENSG00000143512	HHIPL2	KIAA1822L	HHIP like 2	protein-coding
176	chr1	155505211	155507704	+	0	NA	intron (NM_018489, intron 1 of 27)	AluJo|SINE|Alu	-25376	NR_147963	645676	Hs.568693	NR_027023	ENSG00000235919	ASH1L-AS1	-	ASH1L antisense RNA 1	ncRNA
825	chr1	16838196	16843379	+	0	NA	Intergenic	CpG	21360	NR_135764	100132147	Hs.645945	NR_135764	ENSG00000233421	LINC01783	-	long intergenic non-protein coding RNA 1783	ncRNA
858	chr10	106010254	106025493	+	0	NA	intron (NM_004832, intron 2 of 5)	L2a|LINE|L2	3405	NM_004832	9446	Hs.190028	NM_004832	ENSG00000148834	GSTO1	GSTO 1-1|GSTTLp28|HEL-S-21|P28|SPG-R	glutathione S-transferase omega 1	protein-coding
465	chr11	117869732	117879258	+	0	NA	Intergenic	L2a|LINE|L2	17389	NM_001558	3587	Hs.504035	NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
276	chr1	28604525	28606586	+	0	NA	intron (NM_031459, intron 8 of 9)	intron (NM_031459, intron 8 of 9)	19592	NM_031459	83667	Hs.469543	NM_031459	ENSG00000130766	SESN2	HI95|SES2|SEST2	sestrin 2	protein-coding
452	chr19	39747900	39750419	+	0	NA	Intergenic	LTR13A|LTR|ERVK	-9663	NR_074079	101180976	Hs.745579	NM_001276254	ENSG00000272395	IFNL4	IFNAN	interferon lambda 4 (gene/pseudogene)	protein-coding
395	chr15	90683681	90689190	+	0	NA	Intergenic	Intergenic	-40649	NM_002168	3418	Hs.596461	NM_002168	ENSG00000182054	IDH2	D2HGA2|ICD-M|IDH|IDHM|IDP|IDPM|mNADP-IDH	isocitrate dehydrogenase (NADP(+)) 2, mitochondrial	protein-coding
928	chr7	100207779	100213253	+	0	NA	exon (NM_023948, exon 1 of 5)	exon (NM_023948, exon 1 of 5)	402	NM_023948	64598	Hs.521086	NM_023948	ENSG00000106330	MOSPD3	CDS3|NET30	motile sperm domain containing 3	protein-coding
17	chr6	15915064	15917081	+	0	NA	Intergenic	UCON6|Unknown|Unknown	-213245	NM_013262	29116	Hs.484738	NM_013262	ENSG00000007944	MYLIP	IDOL|MIR	myosin regulatory light chain interacting protein	protein-coding
299	chr6	117914891	117917706	+	0	NA	intron (NM_001017408, intron 1 of 7)	LTR56|LTR|ERV1	7407	NM_001017408	57120	Hs.191539	NM_020399	ENSG00000047932	GOPC	CAL|FIG|GOPC1|PIST|dJ94G16.2	golgi associated PDZ and coiled-coil motif containing	protein-coding
916	chr6	13603460	13605739	+	0	NA	intron (NM_012241, intron 9 of 9)	intron (NM_012241, intron 9 of 9)	-10960	NM_001317724	51406	Hs.306242	NM_016167	ENSG00000225921	NOL7	C6orf90|PQBP3|RARG-1|dJ223E5.2	nucleolar protein 7	protein-coding
804	chr20	34249993	34254287	+	0	NA	intron (NM_001198838, intron 1 of 2)	intron (NM_001198838, intron 1 of 2)	719	NR_037188	8904	Hs.246413	NM_003915	ENSG00000214078	CPNE1	COPN1|CPN1	copine 1	protein-coding
6	chr10	5970351	5979910	+	0	NA	intron (NM_032807, intron 20 of 21)	AluSz|SINE|Alu	35761	NM_001351096	3601	Hs.445124	NM_002189	ENSG00000134470	IL15RA	CD215	interleukin 15 receptor subunit alpha	protein-coding
992	chr22	39187602	39192177	+	0	NA	intron (NM_005740, intron 1 of 3)	CpG	272	NM_005740	10126	Hs.632766	NM_005740	ENSG00000100246	DNAL4	MRMV3|PIG27	dynein axonemal light chain 4	protein-coding
307	chr2	171827559	171831609	+	0	NA	Intergenic	Intergenic	44548	NM_015530	26003	Hs.431317	NM_015530	ENSG00000115806	GORASP2	GOLPH6|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding
158	chr3	138542040	138547881	+	0	NA	Intergenic	Intergenic	-66759	NM_006219	5291	Hs.239818	NM_006219	ENSG00000051382	PIK3CB	P110BETA|PI3K|PI3KBETA|PIK3C1	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding
535	chr17	18215540	18223097	+	0	NA	promoter-TSS (NM_001320759)	promoter-TSS (NM_001320759)	724	NM_144775	140775	Hs.592944	NM_144775	ENSG00000176994	SMCR8	-	Smith-Magenis syndrome chromosome region, candidate 8	protein-coding
231	chr3	48645095	48648508	+	0	NA	intron (NM_003365, intron 1 of 12)	CpG	297	NM_003365	7384	Hs.119251	NM_003365	ENSG00000010256	UQCRC1	D3S3191|QCR1|UQCR1	ubiquinol-cytochrome c reductase core protein 1	protein-coding
424	chr16	30132493	30135781	+	0	NA	intron (NM_001040056, intron 1 of 6)	intron (NM_001040056, intron 1 of 6)	493	NM_002746	5595	Hs.861	NM_002746	ENSG00000102882	MAPK3	ERK-1|ERK1|ERT2|HS44KDAP|HUMKER1A|P44ERK1|P44MAPK|PRKM3|p44-ERK1|p44-MAPK	mitogen-activated protein kinase 3	protein-coding
