PeakID (cmd=annotatePeaks.pl ./example/K562_classification_example/tmp/anchor1.tmp hg19)	Chr	Start	End	Strand	Peak Score	Focus Ratio/Region Size	Annotation	Detailed Annotation	Distance to TSS	Nearest PromoterID	Entrez ID	Nearest Unigene	Nearest Refseq	Nearest Ensembl	Gene Name	Gene Alias	Gene Description	Gene Type
511	chr20	3867534	3874188	+	0	NA	intron (NM_001324193, intron 1 of 6)	intron (NM_001324193, intron 1 of 6)	412	NM_001324193	80025	Hs.114180	NM_024960	ENSG00000125779	PANK2	C20orf48|HARP|HSS|NBIA1|PKAN	pantothenate kinase 2	protein-coding
898	chr11	3872060	3894421	+	0	NA	intron (NM_003156, intron 1 of 11)	intron (NM_003156, intron 1 of 11)	5948	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
469	chr2	62403401	62407070	+	0	NA	Intergenic	Intergenic	-18027	NM_006577	10678	Hs.173203	NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
867	chr12	132626596	132630741	+	0	NA	promoter-TSS (NM_024078)	promoter-TSS (NM_024078)	212	NM_175066	317781	Hs.445168	NM_175066	ENSG00000185163	DDX51	-	DEAD-box helicase 51	protein-coding
89	chr6	14972442	14974110	+	0	NA	Intergenic	L1MB2|LINE|L1	-272930	NM_004973	3720	Hs.269059	NM_004973	ENSG00000008083	JARID2	JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
960	chr19	18313502	18317777	+	0	NA	promoter-TSS (NM_002866)	promoter-TSS (NM_002866)	99	NR_134910	102725254	Hs.437211	NR_134910	ENSG00000268650	LOC102725254	-	uncharacterized LOC102725254	ncRNA
211	chr6	42163019	42171449	+	0	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	-4540	NM_002098	2979	Hs.446529	NM_002098	ENSG00000112599	GUCA1B	GCAP2|GUCA2|RP48	guanylate cyclase activator 1B	protein-coding
550	chr15	64979853	65001930	+	0	NA	intron (NM_002537, intron 1 of 4)	FLAM_C|SINE|Alu	4589	NM_001301302	4947	Hs.744924	NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
137	chr2	70329317	70375156	+	0	NA	non-coding (NR_024444, exon 1 of 2)	non-coding (NR_024444, exon 1 of 2)	212	NR_024444	100133985	Hs.135528	NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA
9	chr11	126078483	126084019	+	0	NA	promoter-TSS (NM_024556)	promoter-TSS (NM_024556)	336	NM_001144827	84881	Hs.150458	NM_032795	ENSG00000165526	RPUSD4	-	RNA pseudouridylate synthase domain containing 4	protein-coding
452	chr19	39223444	39229682	+	0	NA	intron (NM_144691, intron 12 of 20)	(CGGGG)n|Simple_repeat|Simple_repeat	8551	NM_144691	147968	Hs.731775	NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
361	chr14	93192376	93194180	+	0	NA	intron (NM_001008530, intron 3 of 14)	MLT1L|LTR|ERVL-MaLR	21769	NM_005606	5641	Hs.18069	NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
199	chr3	128800304	128801867	+	0	NA	Intergenic	Intergenic	21475	NM_000174	2815	Hs.1144	NM_000174	ENSG00000169704	GP9	CD42a|GPIX	glycoprotein IX platelet	protein-coding
950	chr18	2318133	2332374	+	0	NA	Intergenic	MER58B|DNA|hAT-Charlie	246249	NM_001308401	64863	Hs.126888	NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase like 4	protein-coding
736	chr22	20181599	20208666	+	0	NA	non-coding (NR_026919, exon 1 of 1)	non-coding (NR_026919, exon 1 of 1)	1277	NR_026919	150197	Hs.635544	NM_152508	ENSG00000236499	LINC00896	-	long intergenic non-protein coding RNA 896	ncRNA
814	chr1	25087690	25094075	+	0	NA	intron (NM_013943, intron 1 of 5)	AluSp|SINE|Alu	19122	NM_013943	25932	Hs.440544	NM_013943	ENSG00000169504	CLIC4	CLIC4L|H1|MTCLIC|huH1|p64H1	chloride intracellular channel 4	protein-coding
557	chr6	89670999	89676301	+	0	NA	promoter-TSS (NM_003800)	promoter-TSS (NM_003800)	-302	NM_003800	8732	Hs.567378	NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
281	chr9	140559266	140585867	+	0	NA	intron (NM_001354612, intron 1 of 8)	intron (NM_001354612, intron 1 of 8)	59122	NM_001354612	79813	Hs.495511	NM_024757	ENSG00000181090	EHMT1	EHMT1-IT1|EUHMTASE1|Eu-HMTase1|FP13812|GLP|GLP1|KLEFS1|KMT1D	euchromatic histone lysine methyltransferase 1	protein-coding
408	chr6	105846759	105853308	+	0	NA	intron (NM_002726, intron 1 of 14)	intron (NM_002726, intron 1 of 14)	966	NM_002726	5550	Hs.436564	NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
380	chr5	10426567	10429573	+	0	NA	intron (NM_005885, intron 24 of 25)	AluJr|SINE|Alu	13893	NR_102746	100505845	Hs.599395	NR_102746		ROPN1L-AS1	-	ROPN1L antisense RNA 1	ncRNA
438	chr2	9753094	9755097	+	0	NA	intron (NM_006826, intron 2 of 5)	intron (NM_006826, intron 2 of 5)	17089	NM_006826	10971	Hs.74405	NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
153	chr8	125481075	125491023	+	0	NA	promoter-TSS (NM_007218)	promoter-TSS (NM_007218)	546	NR_108048	101927612	Hs.633137	NR_108047	ENSG00000245149	RNF139-AS1	-	RNF139 antisense RNA 1 (head to head)	ncRNA
251	chr15	45108515	45115957	+	0	NA	Intergenic	Intergenic	62581	NR_146393	653381	Hs.878	NR_146393	ENSG00000259479	SORD2P	SORD2	sorbitol dehydrogenase 2, pseudogene	pseudo
806	chr16	67299696	67304921	+	0	NA	intron (NM_001323972, intron 14 of 14)	AluJr|SINE|Alu	-9752	NM_001129727	25894	Hs.188781	NM_015432	ENSG00000196155	PLEKHG4	ARHGEF44|PRTPHN1|SCA4	pleckstrin homology and RhoGEF domain containing G4	protein-coding
672	chr4	37686351	37690074	+	0	NA	promoter-TSS (NM_001085399)	promoter-TSS (NM_001085399)	-213	NM_001085399	768211	Hs.283378	NM_001085399	ENSG00000181826	RELL1	-	RELT like 1	protein-coding
24	chr1	32340331	32365980	+	0	NA	Intergenic	L1MB5|LINE|L1	32104	NM_001195100	8073	Hs.470477	NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase type IVA, member 2	protein-coding
573	chr3	12683962	12685316	+	0	NA	intron (NM_001354691, intron 1 of 16)	intron (NM_001354691, intron 1 of 16)	20368	NM_001354690	5894	Hs.159130	NM_002880	ENSG00000132155	RAF1	CMD1NN|CRAF|NS5|Raf-1|c-Raf	Raf-1 proto-oncogene, serine/threonine kinase	protein-coding
123	chr15	41981045	41984638	+	0	NA	promoter-TSS (NR_030356)	promoter-TSS (NR_030356)	-942	NR_030356	693211		NR_030356	ENSG00000207766	MIR626	MIRN626|hsa-mir-626	microRNA 626	ncRNA
687	chr11	75241977	75252263	+	0	NA	Intergenic	AluSz|SINE|Alu	-10502	NM_030792	81544	Hs.503297	NM_030792	ENSG00000158555	GDPD5	GDE2|PP1665	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding
563	chr3	47513407	47525846	+	0	NA	Intergenic	Intergenic	-2177	NM_001320044	22937	Hs.531789	NM_012235	ENSG00000114650	SCAP	-	SREBF chaperone	protein-coding
103	chr4	108944213	108946820	+	0	NA	intron (NM_001331027, intron 5 of 7)	intron (NM_001331027, intron 5 of 7)	19696	NM_001331027	3033	Hs.438289	NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
746	chr19	5685866	5694712	+	0	NA	promoter-TSS (NM_033643)	promoter-TSS (NM_033643)	17	NM_033643	25873	Hs.408018	NM_015414	ENSG00000130255	RPL36	L36	ribosomal protein L36	protein-coding
668	chr19	46193069	46198318	+	0	NA	promoter-TSS (NM_177542)	promoter-TSS (NM_177542)	-48	NM_017659	54814	Hs.631556	NM_017659	ENSG00000011478	QPCTL	gQC	glutaminyl-peptide cyclotransferase like	protein-coding
543	chr9	134478613	134490522	+	0	NA	intron (NM_001304275, intron 11 of 23)	intron (NM_001304275, intron 11 of 23)	-77905	NM_001318519	83549	Hs.9597	NM_031432	ENSG00000130717	UCK1	URK1	uridine-cytidine kinase 1	protein-coding
100	chr18	207590	216469	+	0	NA	3' UTR (NM_005151, exon 16 of 16)	3' UTR (NM_005151, exon 16 of 16)	53546	NM_001037334	9097	Hs.464416	NM_005151	ENSG00000101557	USP14	TGT	ubiquitin specific peptidase 14	protein-coding
25	chr14	31516003	31532412	+	0	NA	intron (NM_001254728, intron 1 of 5)	L1MC3|LINE|L1	28358	NM_001254728	11154	Hs.293411	NM_007077	ENSG00000100478	AP4S1	AP47B|CLA20|CLAPS4|CPSQ6|SPG52	adaptor related protein complex 4 subunit sigma 1	protein-coding
982	chr6	38605336	38609527	+	0	NA	intron (NM_052893, intron 1 of 11)	CpG	493	NM_001099272	114781	Hs.603858	NM_052893	ENSG00000183826	BTBD9	dJ322I12.1	BTB domain containing 9	protein-coding
525	chr2	196500118	196537875	+	0	NA	Intergenic	Intergenic	-2536	NM_001127257	57181	Hs.650158	NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2	solute carrier family 39 member 10	protein-coding
862	chr19	3612029	3615022	+	0	NA	exon (NM_001080543, exon 8 of 10)	exon (NM_001080543, exon 8 of 10)	6280	NR_038865	404665	Hs.719726	NM_001012712	ENSG00000226800	CACTIN-AS1	C19orf29-AS1|C19orf29OS	CACTIN antisense RNA 1	ncRNA
815	chr11	11010633	11012705	+	0	NA	Intergenic	Intergenic	131905	NR_034137	729013	Hs.726427	NR_034137	ENSG00000247271	ZBED5-AS1	-	ZBED5 antisense RNA 1	ncRNA
382	chr12	104321012	104330195	+	0	NA	intron (NM_003299, intron 2 of 17)	intron (NM_003299, intron 2 of 17)	1400	NR_037425	100500842		NR_037425	ENSG00000284503	MIR3652	-	microRNA 3652	ncRNA
266	chr19	14244838	14250131	+	0	NA	promoter-TSS (NR_045214)	promoter-TSS (NR_045214)	-44	NM_018154	55723	Hs.26516	NM_018154	ENSG00000105011	ASF1B	CIA-II	anti-silencing function 1B histone chaperone	protein-coding
990	chr6	34429096	34432544	+	0	NA	Intergenic	AluJo|SINE|Alu	-3018	NM_020804	29993	Hs.520087	NM_020804	ENSG00000124507	PACSIN1	SDPI	protein kinase C and casein kinase substrate in neurons 1	protein-coding
403	chr19	39387980	39392931	+	0	NA	promoter-TSS (NR_040515)	promoter-TSS (NR_040515)	8	NM_012237	22933	Hs.466693	NM_012237	ENSG00000068903	SIRT2	SIR2|SIR2L|SIR2L2	sirtuin 2	protein-coding
453	chr16	28960402	28964950	+	0	NA	exon (NM_032815, exon 1 of 8)	exon (NM_032815, exon 1 of 8)	358	NM_032815	84901	Hs.513470	NM_032815	ENSG00000176953	NFATC2IP	ESC2|NIP45|RAD60	nuclear factor of activated T cells 2 interacting protein	protein-coding
365	chr1	27325359	27365109	+	0	NA	Intergenic	Intergenic	-5901	NM_052943	115572	Hs.632378	NM_052943	ENSG00000158246	TENT5B	FAM46B	terminal nucleotidyltransferase 5B	protein-coding
35	chr1	19802159	19805480	+	0	NA	intron (NM_001206541, intron 1 of 8)	intron (NM_001206541, intron 1 of 8)	7382	NM_001282162	832	Hs.432760	NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
260	chr1	10269053	10273643	+	0	NA	intron (NM_015074, intron 1 of 46)	intron (NM_015074, intron 1 of 46)	584	NM_183416	23095	Hs.97858	NM_015074	ENSG00000054523	KIF1B	CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1	kinesin family member 1B	protein-coding
715	chr19	49988570	50004763	+	0	NA	Intergenic	AluSx1|SINE|Alu	2234	NR_000018	26816		NR_000018	ENSG00000200259	SNORD35A	RNU35|RNU35A|U35	small nucleolar RNA, C/D box 35A	snoRNA
549	chr10	29106584	29116887	+	0	NA	Intergenic	Intergenic	-23602	NM_001278522	283080		NM_001278522		C10orf126	bA492M23.1	chromosome 10 open reading frame 126	protein-coding
307	chr2	170760746	170789093	+	0	NA	intron (NM_172070, intron 11 of 38)	intron (NM_172070, intron 11 of 38)	90901	NM_172070	130507	Hs.379548	NM_172070	ENSG00000144357	UBR3	ZNF650	ubiquitin protein ligase E3 component n-recognin 3 (putative)	protein-coding
984	chr13	34251916	34254678	+	0	NA	Intergenic	Intergenic	-2325	NM_001243476	90627	Hs.156551	NM_052851	ENSG00000133121	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR related lipid transfer domain containing 13	protein-coding
250	chr2	85529202	85566985	+	0	NA	3' UTR (NM_001206844, exon 5 of 5)	3' UTR (NM_001206844, exon 5 of 5)	7326	NM_001206840	10618	Hs.593382	NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2	trans-golgi network protein 2	protein-coding
182	chr18	57548129	57551081	+	0	NA	Intergenic	Intergenic	-17587	NM_021127	5366	Hs.96	NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
280	chrX	122897357	122900680	+	0	NA	Intergenic	Intergenic	-32114	NM_001081550	57187	Hs.149991	NM_020449	ENSG00000125676	THOC2	CXorf3|MRX12|MRX35|THO2|dJ506G2.1|hTREX120	THO complex 2	protein-coding
637	chr5	10576633	10579711	+	0	NA	intron (NM_001164440, intron 1 of 3)	intron (NM_001164440, intron 1 of 3)	13737	NM_001164440	651746	Hs.26039	NM_001164440	ENSG00000164236	ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
869	chrX	40819348	40831341	+	0	NA	Intergenic	Intergenic	-119544	NM_001039591	8239	Hs.77578	NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAM|MRX99|MRXS99F	ubiquitin specific peptidase 9, X-linked	protein-coding
788	chr19	14535316	14537654	+	0	NA	Intergenic	Intergenic	-6290	NR_046366	10212	Hs.311609	NM_005804	ENSG00000123136	DDX39A	BAT1|BAT1L|DDX39|DDXL|URH49	DExD-box helicase 39A	protein-coding
719	chr3	15834010	15849838	+	0	NA	intron (NM_015199, intron 1 of 27)	MIR|SINE|MIR	-2233	NM_001349284	23243	Hs.335239	NM_015199	ENSG00000206560	ANKRD28	PITK|PPP1R65	ankyrin repeat domain 28	protein-coding
606	chr3	156824163	156839409	+	0	NA	intron (NR_034007, intron 1 of 3)	L2c|LINE|L2	9005	NR_034007	339894	Hs.478050	NR_034007	ENSG00000243629	LINC00880	-	long intergenic non-protein coding RNA 880	ncRNA
601	chr21	38676276	38677854	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-36656	NM_001331021	10311	Hs.369488	NM_006052	ENSG00000157538	VPS26C	DCRA|DSCR3|DSCRA	VPS26 endosomal protein sorting factor C	protein-coding
600	chr7	138032990	138046593	+	0	NA	Intergenic	AluSq2|SINE|Alu	-105288	NM_015905	8805	Hs.490287	NM_003852	ENSG00000122779	TRIM24	PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1	tripartite motif containing 24	protein-coding
356	chr11	118656152	118665099	+	0	NA	intron (NM_004397, intron 1 of 13)	intron (NM_004397, intron 1 of 13)	1032	NM_001257191	1656	Hs.408461	NM_004397	ENSG00000110367	DDX6	HLR2|P54|RCK	DEAD-box helicase 6	protein-coding
435	chr10	99067793	99105337	+	0	NA	Intergenic	AluSz|SINE|Alu	7543	NM_005479	10023	Hs.126057	NM_005479	ENSG00000165879	FRAT1	-	FRAT1, WNT signaling pathway regulator	protein-coding
580	chr1	36808497	36819109	+	0	NA	intron (NM_001282547, intron 7 of 10)	L2b|LINE|L2	-24048	NM_018166	55194	Hs.87016	NM_018166	ENSG00000142694	EVA1B	C1orf78|FAM176B	eva-1 homolog B	protein-coding
208	chr19	12790530	12794611	+	0	NA	promoter-TSS (NM_001206974)	promoter-TSS (NM_001206974)	131	NR_038192	1725	Hs.79064	NM_001930	ENSG00000095059	DHPS	DHS|DS|MIG13	deoxyhypusine synthase	protein-coding
289	chr11	46372109	46376426	+	0	NA	intron (NM_001199268, intron 1 of 29)	intron (NM_001199268, intron 1 of 29)	5311	NM_003646	8525	Hs.502461	NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
242	chr9	100070399	100089226	+	0	NA	intron (NR_036529, intron 20 of 44)	intron (NR_036529, intron 20 of 44)	9902	NM_020893	100499483	Hs.435629	NM_020893	ENSG00000197816	CCDC180	C9orf174	coiled-coil domain containing 180	protein-coding
630	chr1	167829054	167841355	+	0	NA	intron (NM_018417, intron 14 of 32)	Harlequin-int|LTR|ERV1	48260	NM_001167749	55811	Hs.320892	NM_018417	ENSG00000143199	ADCY10	HCA2|HEL-S-7a|SAC|SACI|Sacy|hsAC	adenylate cyclase 10	protein-coding
176	chr1	154940731	154952414	+	0	NA	promoter-TSS (NR_024163)	promoter-TSS (NR_024163)	387	NM_001202859	6464	Hs.433795	NM_003029	ENSG00000160691	SHC1	SHC|SHCA	SHC adaptor protein 1	protein-coding
893	chr1	27558452	27564116	+	0	NA	5' UTR (NM_015023, exon 1 of 16)	5' UTR (NM_015023, exon 1 of 16)	277	NM_001276252	23038	Hs.469154	NM_015023	ENSG00000142784	WDTC1	ADP|DCAF9	WD and tetratricopeptide repeats 1	protein-coding
414	chr4	183984554	183987180	+	0	NA	Intergenic	MER74A|LTR|ERVL	27049	NR_003612	403315	Hs.652187	NR_003612	ENSG00000230219	FAM92A1P2	FAM92A3	family with sequence similarity 92, member A3	pseudo
155	chr18	1313648	1320245	+	0	NA	intron (NR_023926, intron 2 of 5)	MLT1J2|LTR|ERVL-MaLR	42684	NR_110327	56651	Hs.541165	NM_031416		LINC00470	C18orf2	long intergenic non-protein coding RNA 470	ncRNA
490	chr9	88965197	88971200	+	0	NA	intron (NM_001185059, intron 1 of 26)	intron (NM_001185059, intron 1 of 26)	1167	NM_001330718	79670	Hs.597057	NM_024617	ENSG00000083223	TUT7	PAPD6|TENT3B|ZCCHC6	terminal uridylyl transferase 7	protein-coding
326	chr8	141535868	141538207	+	0	NA	3' UTR (NM_012154, exon 19 of 19)	3' UTR (NM_012154, exon 19 of 19)	14956	NR_040712	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding
404	chr3	157192384	157194703	+	0	NA	intron (NM_001167912, intron 2 of 13)	ERV3-16A3_I-int|LTR|ERVL	19752	NM_001167917	79674	Hs.658046	NM_024621	ENSG00000197415	VEPH1	MELT|VEPH	ventricular zone expressed PH domain containing 1	protein-coding
588	chr1	40263825	40266935	+	0	NA	Intergenic	MIR3|SINE|MIR	10732	NR_135805	101929536	Hs.552820	NR_135805	ENSG00000261798	LOC101929536	-	uncharacterized LOC101929536	ncRNA
390	chr8	21964473	21969760	+	0	NA	promoter-TSS (NM_024815)	promoter-TSS (NM_024815)	-184	NM_024815	79873	Hs.527101	NM_024815	ENSG00000275074	NUDT18	MTH3	nudix hydrolase 18	protein-coding
706	chr2	65301442	65304629	+	0	NA	intron (NR_134966, intron 4 of 5)	intron (NR_134966, intron 4 of 5)	19540	NR_134966	23177	Hs.709257	NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
842	chr19	16185154	16192082	+	0	NA	intron (NM_003290, intron 1 of 7)	AluSx3|SINE|Alu	1483	NM_003290	7171	Hs.631618	NM_003290	ENSG00000167460	TPM4	HEL-S-108	tropomyosin 4	protein-coding
488	chr10	99387139	99389905	+	0	NA	intron (NM_001098831, intron 1 of 4)	AluSz6|SINE|Alu	4822	NM_178832	118812	Hs.217409	NM_178832	ENSG00000171160	MORN4	C10orf83|UTA|bA548K23.4|rtp	MORN repeat containing 4	protein-coding
952	chr12	123306714	123308195	+	0	NA	intron (NR_027918, intron 11 of 12)	L1MA7|LINE|L1	-11808	NM_001303099	9026	Hs.524815	NM_003959	ENSG00000130787	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
868	chr1	151567894	151569869	+	0	NA	Intergenic	Intergenic	-15781	NM_001330723	81609	Hs.192326	NM_030918	ENSG00000143376	SNX27	MRT1|MY014	sorting nexin family member 27	protein-coding
20	chr5	139025208	139055446	+	0	NA	intron (NM_001317207, intron 1 of 2)	intron (NM_001317207, intron 1 of 2)	1187	NM_001317206	51523	Hs.189119	NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
955	chr8	130880920	130885188	+	0	NA	intron (NM_001353310, intron 5 of 12)	intron (NM_001353310, intron 5 of 12)	69064	NM_001353266	51571	Hs.126941	NM_016623	ENSG00000153310	FAM49B	BM-009|L1	family with sequence similarity 49 member B	protein-coding
816	chr1	228364785	228367632	+	0	NA	3' UTR (NM_001010867, exon 3 of 3)	3' UTR (NM_001010867, exon 3 of 3)	3957	NM_001310327	200205	Hs.237017	NM_001010867	ENSG00000181873	IBA57	C1orf69|MMDS3|SPG74	IBA57, iron-sulfur cluster assembly	protein-coding
271	chr19	49616396	49618914	+	0	NA	promoter-TSS (NM_022165)	promoter-TSS (NM_022165)	37	NM_022165	64130	Hs.221737	NM_022165	ENSG00000104863	LIN7B	LIN-7B|MALS-2|MALS2|VELI2	lin-7 homolog B, crumbs cell polarity complex component	protein-coding
998	chr9	94472019	94474853	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-74809	NR_037489	100500902		NR_037489	ENSG00000283351	MIR3910-2	mir-3910-2	microRNA 3910-2	ncRNA
967	chr8	38850612	38859249	+	0	NA	promoter-TSS (NM_078473)	promoter-TSS (NM_078473)	425	NR_027638	8754	Hs.591852	NM_003816	ENSG00000168615	ADAM9	CORD9|MCMP|MDC9|Mltng	ADAM metallopeptidase domain 9	protein-coding
871	chr9	80571405	80577581	+	0	NA	intron (NM_002072, intron 1 of 6)	intron (NM_002072, intron 1 of 6)	71872	NM_002072	2776	Hs.269782	NM_002072	ENSG00000156052	GNAQ	CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
436	chr5	39100402	39104341	+	0	NA	Intergenic	AluSc8|SINE|Alu	-27861	NM_001285440	253260	Hs.407926	NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
917	chr19	11637918	11644137	+	0	NA	Intergenic	L2a|LINE|L2	-1040	NM_016581	51295	Hs.515146	NM_016581	ENSG00000130159	ECSIT	SITPEC	ECSIT signalling integrator	protein-coding
115	chr19	49239611	49246759	+	0	NA	TTS (NR_135832)	TTS (NR_135832)	785	NM_017805	54922	Hs.233955	NM_017805	ENSG00000105538	RASIP1	RAIN	Ras interacting protein 1	protein-coding
834	chr6	15283447	15315152	+	0	NA	intron (NM_001267040, intron 1 of 17)	intron (NM_001267040, intron 1 of 17)	50213	NM_001267040	3720	Hs.269059	NM_004973	ENSG00000008083	JARID2	JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
985	chr5	149103917	149132832	+	0	NA	intron (NM_001172698, intron 1 of 10)	AluSx4|SINE|Alu	5986	NR_029870	494327		NR_029870	ENSG00000199047	MIR378A	MIR378|MIRN378|hsa-mir-378|hsa-mir-378a|miRNA378	microRNA 378a	ncRNA
372	chr4	48170019	48172467	+	0	NA	intron (NM_003215, intron 5 of 17)	MLT1J|LTR|ERVL-MaLR	-34970	NM_003328	7294	Hs.479669	NM_003328	ENSG00000074966	TXK	BTKL|PSCTK5|PTK4|RLK|TKL	TXK tyrosine kinase	protein-coding
431	chr16	67593367	67600182	+	0	NA	intron (NM_006565, intron 1 of 11)	CpG	464	NM_001191022	10664	Hs.368367	NM_006565	ENSG00000102974	CTCF	MRD21	CCCTC-binding factor	protein-coding
711	chr1	227496162	227509034	+	0	NA	intron (NM_003607, intron 1 of 35)	intron (NM_003607, intron 1 of 35)	3228	NM_014826	8476	Hs.35433	NM_003607	ENSG00000143776	CDC42BPA	MRCK|MRCKA|PK428	CDC42 binding protein kinase alpha	protein-coding
503	chr1	46662185	46666584	+	0	NA	promoter-TSS (NM_017739)	promoter-TSS (NM_017739)	-263	NM_017739	55624	Hs.525134	NM_017739	ENSG00000085998	POMGNT1	GNTI.2|GnT I.2|LGMD2O|MEB|MGAT1.2|RP76|gnT-I.2	protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)	protein-coding
474	chr16	50292370	50310718	+	0	NA	intron (NM_001286057, intron 1 of 18)	intron (NM_001286057, intron 1 of 18)	1093	NM_001286057	113	Hs.513578	NM_001114	ENSG00000121281	ADCY7	AC7	adenylate cyclase 7	protein-coding
228	chr2	170894136	170921590	+	0	NA	intron (NM_172070, intron 32 of 38)	AluSq2|SINE|Alu	-126792	NM_138995	140469	Hs.671900	NM_138995	ENSG00000071909	MYO3B	-	myosin IIIB	protein-coding
98	chr6	28045914	28050927	+	0	NA	promoter-TSS (NM_003447)	promoter-TSS (NM_003447)	-62	NM_003447	7718	Hs.55481	NM_003447	ENSG00000197279	ZNF165	CT53|LD65|ZSCAN7	zinc finger protein 165	protein-coding
389	chr11	125418661	125427496	+	0	NA	Intergenic	HUERS-P3b-int|LTR|ERV1	-16205	NM_001330419	9538	Hs.643514	NM_004879	ENSG00000149547	EI24	EPG4|PIG8|TP53I8	EI24, autophagy associated transmembrane protein	protein-coding
929	chr1	149781068	149786480	+	0	NA	exon (NM_001161334, exon 1 of 2)	exon (NM_001161334, exon 1 of 2)	154	NM_001161334	440689	Hs.632451	NM_001024599	ENSG00000203814	HIST2H2BF	-	histone cluster 2 H2B family member f	protein-coding
533	chr11	46293229	46305206	+	0	NA	promoter-TSS (NM_052854)	promoter-TSS (NM_052854)	28	NM_052854	90993	Hs.405961	NM_052854	ENSG00000157613	CREB3L1	OASIS	cAMP responsive element binding protein 3 like 1	protein-coding
926	chr17	56567507	56572439	+	0	NA	intron (NM_004687, intron 17 of 18)	intron (NM_004687, intron 17 of 18)	-4211	NM_001080439	124535	Hs.380061	NM_001080439	ENSG00000176160	HSF5	HSF 5|HSTF 5	heat shock transcription factor 5	protein-coding
875	chr9	130563131	130568162	+	0	NA	5' UTR (NM_001018078, exon 1 of 15)	5' UTR (NM_001018078, exon 1 of 15)	186	NM_001018078	2356	Hs.335084	NM_004957	ENSG00000136877	FPGS	-	folylpolyglutamate synthase	protein-coding
761	chrX	48752340	48757238	+	0	NA	promoter-TSS (NM_005710)	promoter-TSS (NM_005710)	-406	NM_001032382	10084	Hs.534384	NM_005710	ENSG00000102103	PQBP1	MRX2|MRX55|MRXS3|MRXS8|NPW38|RENS1|SHS	polyglutamine binding protein 1	protein-coding
264	chr15	75814123	75816573	+	0	NA	intron (NM_002833, intron 4 of 12)	intron (NM_002833, intron 4 of 12)	56284	NM_002833	5780	Hs.445775	NM_002833	ENSG00000169410	PTPN9	MEG2|PTPMEG2	protein tyrosine phosphatase, non-receptor type 9	protein-coding
707	chr5	10688462	10690639	+	0	NA	intron (NM_004394, intron 2 of 3)	intron (NM_004394, intron 2 of 3)	71837	NM_001291963	1611	Hs.75189	NM_004394	ENSG00000112977	DAP	-	death associated protein	protein-coding
331	chr21	37768536	37770263	+	0	NA	intron (NM_005441, intron 5 of 13)	intron (NM_005441, intron 5 of 13)	11710	NM_005441	8208	Hs.75238	NM_005441	ENSG00000159259	CHAF1B	CAF-1|CAF-IP60|CAF1|CAF1A|CAF1P60|MPHOSPH7|MPP7	chromatin assembly factor 1 subunit B	protein-coding
248	chr10	120965020	120968257	+	0	NA	promoter-TSS (NM_005308)	promoter-TSS (NM_005308)	-559	NM_005308	2869	Hs.524625	NM_005308	ENSG00000198873	GRK5	GPRK5	G protein-coupled receptor kinase 5	protein-coding
16	chr16	8035119	8047374	+	0	NA	Intergenic	L1MA4|LINE|L1	546582	NM_001290098	283953	Hs.150849	NM_001146336	ENSG00000232258	TMEM114	-	transmembrane protein 114	protein-coding
80	chr17	44846459	44853727	+	0	NA	intron (NM_030753, intron 2 of 4)	intron (NM_030753, intron 2 of 4)	46033	NM_030753	7473	Hs.445884	NM_030753	ENSG00000108379	WNT3	INT4|TETAMS	Wnt family member 3	protein-coding
212	chr22	18557627	18564141	+	0	NA	5' UTR (NM_001127649, exon 1 of 5)	5' UTR (NM_001127649, exon 1 of 5)	124	NM_001127649	55670	Hs.517400	NM_017929	ENSG00000215193	PEX26	PBD7A|PBD7B|PEX26M1T|Pex26pM1T	peroxisomal biogenesis factor 26	protein-coding
943	chr12	129301288	129303724	+	0	NA	intron (NM_145648, intron 1 of 7)	intron (NM_145648, intron 1 of 7)	6035	NM_145648	121260	Hs.507260	NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
565	chr7	151044575	151052043	+	0	NA	intron (NM_016118, intron 3 of 14)	intron (NM_016118, intron 3 of 14)	9462	NM_016118	51667	Hs.647082	NM_016118	ENSG00000013374	NUB1	BS4|NUB1L|NYREN18	negative regulator of ubiquitin like proteins 1	protein-coding
619	chrX	38628335	38631867	+	0	NA	Intergenic	Intergenic	-30584	NM_021242	58526	Hs.522605	NM_021242	ENSG00000165175	MID1IP1	G12-like|MIG12|S14R|STRAIT11499|THRSPL	MID1 interacting protein 1	protein-coding
354	chr17	4612336	4613949	+	0	NA	promoter-TSS (NM_001330064)	promoter-TSS (NM_001330064)	-647	NM_001330064	409	Hs.435811	NM_004313	ENSG00000141480	ARRB2	ARB2|ARR2|BARR2	arrestin beta 2	protein-coding
697	chr6	15283447	15315152	+	0	NA	intron (NM_001267040, intron 1 of 17)	intron (NM_001267040, intron 1 of 17)	50213	NM_001267040	3720	Hs.269059	NM_004973	ENSG00000008083	JARID2	JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
923	chr10	104355974	104365889	+	0	NA	intron (NM_001178133, intron 8 of 10)	intron (NM_001178133, intron 8 of 10)	-43321	NM_001345950	81603	Hs.336810	NM_030912	ENSG00000171206	TRIM8	GERP|RNF27	tripartite motif containing 8	protein-coding
292	chr22	41745169	41747889	+	0	NA	intron (NM_017590, intron 16 of 22)	L2a|LINE|L2	-16808	NM_001145398	7008	Hs.181159	NM_003216	ENSG00000167074	TEF	-	TEF, PAR bZIP transcription factor	protein-coding
753	chr12	112883509	112884910	+	0	NA	intron (NM_001330437, intron 2 of 15)	intron (NM_001330437, intron 2 of 15)	27507	NM_001330437	5781	Hs.506852	NM_002834	ENSG00000179295	PTPN11	BPTP3|CFC|JMML|METCDS|NS1|PTP-1D|PTP2C|SH-PTP2|SH-PTP3|SHP2	protein tyrosine phosphatase, non-receptor type 11	protein-coding
679	chr18	53124820	53127484	+	0	NA	intron (NR_132985, intron 1 of 1)	intron (NR_132985, intron 1 of 1)	6388	NR_132985	105372127	Hs.666721	NR_132985	ENSG00000267028	TCF4-AS1	MIR4529HG	TCF4 antisense RNA 1	ncRNA
138	chr16	89375386	89406896	+	0	NA	3' UTR (NM_001242885, exon 3 of 3)	3' UTR (NM_001242885, exon 3 of 3)	3600	NM_001242885	100287036	Hs.656995	NM_001242885		LOC100287036	-	uncharacterized LOC100287036	protein-coding
832	chr3	126695489	126710794	+	0	NA	Intergenic	CpG	-4296	NM_032242	5361	Hs.432329	NM_032242	ENSG00000114554	PLXNA1	NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
571	chr12	67660441	67666696	+	0	NA	intron (NM_001329676, intron 1 of 15)	CpG	507	NM_001329674	55832	Hs.546407	NM_018448	ENSG00000111530	CAND1	TIP120|TIP120A	cullin associated and neddylation dissociated 1	protein-coding
391	chr9	114959803	114962502	+	0	NA	Intergenic	Intergenic	-23575	NM_001282640	64420	Hs.494827	NM_022486	ENSG00000106868	SUSD1	-	sushi domain containing 1	protein-coding
481	chr7	65213389	65219026	+	0	NA	promoter-TSS (NR_103527)	promoter-TSS (NR_103527)	115	NR_003110	643253	Hs.488399	NR_003110		CCT6P1	CCT6-5P|CCT6AP1	chaperonin containing TCP1 subunit 6 pseudogene 1	pseudo
223	chr14	23385376	23394346	+	0	NA	non-coding (NR_120599, exon 1 of 2)	non-coding (NR_120599, exon 1 of 2)	1196	NR_120600	100505758	Hs.655707	NR_120599	ENSG00000237054	PRMT5-AS1	-	PRMT5 antisense RNA 1	ncRNA
513	chr22	38660593	38664164	+	0	NA	intron (NM_012264, intron 1 of 8)	MIRc|SINE|MIR	6292	NM_001195071	25829	Hs.182626	NM_012264	ENSG00000198792	TMEM184B	C22orf5|FM08|HS5O6A|HSPC256	transmembrane protein 184B	protein-coding
548	chr6	34554779	34566921	+	0	NA	intron (NM_024294, intron 4 of 4)	AluJr|SINE|Alu	-36740	NM_012391	25803	Hs.485158	NM_012391	ENSG00000124664	SPDEF	PDEF|bA375E1.3	SAM pointed domain containing ETS transcription factor	protein-coding
505	chr1	160016070	160017547	+	0	NA	intron (NM_002241, intron 1 of 1)	intron (NM_002241, intron 1 of 1)	-15025	NM_145167	93183	Hs.552810	NM_145167	ENSG00000143315	PIGM	GPI-MT-I	phosphatidylinositol glycan anchor biosynthesis class M	protein-coding
521	chr2	65301442	65304629	+	0	NA	intron (NR_134966, intron 4 of 5)	intron (NR_134966, intron 4 of 5)	19540	NR_134966	23177	Hs.709257	NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
914	chr15	45070763	45078898	+	0	NA	Intergenic	Intergenic	46270	NM_080745	140691	Hs.745248	NM_080745	ENSG00000185880	TRIM69	HSD-34|HSD34|RNF36|Trif	tripartite motif containing 69	protein-coding
253	chr8	86867368	86869934	+	0	NA	Intergenic	Intergenic	-28480	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	REXO1 like 2, pseudogene	pseudo
285	chr17	78827571	78834598	+	0	NA	intron (NM_020761, intron 12 of 33)	intron (NM_020761, intron 12 of 33)	-51652	NR_110852	101928855	Hs.670692	NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
690	chr13	99616209	99634012	+	0	NA	intron (NM_001130049, intron 1 of 32)	intron (NM_001130049, intron 1 of 32)	5228	NM_001130050	23348	Hs.596105	NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
961	chr5	140975689	141001674	+	0	NA	intron (NM_005219, intron 1 of 27)	intron (NM_005219, intron 1 of 27)	9941	NM_001079812	1729	Hs.529451	NM_005219	ENSG00000131504	DIAPH1	DFNA1|DIA1|DRF1|LFHL1|SCBMS|hDIA1	diaphanous related formin 1	protein-coding
105	chr4	123620220	123623014	+	0	NA	Intergenic	MER70A|LTR|ERVL	31996	NR_024041	729338	Hs.647968	NR_024041		CETN4P	-	centrin 4, pseudogene	pseudo
853	chr16	89447517	89451774	+	0	NA	intron (NM_013275, intron 2 of 12)	intron (NM_013275, intron 2 of 12)	-47681	NR_110932	101927817	Hs.667942	NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
202	chr17	73006568	73011354	+	0	NA	exon (NM_001303265, exon 1 of 6)	exon (NM_001303265, exon 1 of 6)	202	NM_001303265	3396	Hs.407955	NM_001545	ENSG00000167862	MRPL58	DS-1|DS1|ICT1|MRP-L58	mitochondrial ribosomal protein L58	protein-coding
447	chr15	65900646	65906582	+	0	NA	promoter-TSS (NM_001207058)	promoter-TSS (NM_001207058)	13	NM_001207059	81556	Hs.6686	NM_030800	ENSG00000138614	INTS14	C15orf44|VWA9	integrator complex subunit 14	protein-coding
659	chr20	37481653	37493372	+	0	NA	intron (NM_015568, intron 2 of 10)	MLT1H1|LTR|ERVL-MaLR	53176	NM_001172735	26051	Hs.45719	NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
859	chr5	78529620	78536074	+	0	NA	exon (NM_152405, exon 1 of 11)	exon (NM_152405, exon 1 of 11)	922	NM_152405	133746	Hs.482605	NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
762	chr3	195599651	195605448	+	0	NA	intron (NM_001010938, intron 9 of 14)	intron (NM_001010938, intron 9 of 14)	6717	NR_106887	102465977		NR_106887	ENSG00000276489	MIR6829	hsa-mir-6829	microRNA 6829	ncRNA
933	chr19	7716393	7718392	+	0	NA	Intergenic	Intergenic	15405	NM_001127396	6813	Hs.515104	NM_006949	ENSG00000076944	STXBP2	FHL5|Hunc18b|MUNC18-2|UNC18-2|UNC18B|pp10122	syntaxin binding protein 2	protein-coding
491	chr17	13409591	13418457	+	0	NA	intron (NM_006042, intron 1 of 1)	intron (NM_006042, intron 1 of 1)	91235	NM_006042	9955	Hs.462270	NM_006042	ENSG00000153976	HS3ST3A1	3-OST-3A|3OST3A1	heparan sulfate-glucosamine 3-sulfotransferase 3A1	protein-coding
641	chr1	39278879	39284974	+	0	NA	Intergenic	Intergenic	43569	NM_001271851	64121	Hs.532461	NM_022157	ENSG00000116954	RRAGC	GTR2|RAGC|TIB929	Ras related GTP binding C	protein-coding
18	chr11	65639755	65642631	+	0	NA	promoter-TSS (NR_037718)	promoter-TSS (NR_037718)	-788	NR_037718	30008	Hs.731454	NM_016938	ENSG00000172638	EFEMP2	ARCL1B|FBLN4|MBP1|UPH1	EGF containing fibulin extracellular matrix protein 2	protein-coding
478	chr10	103823507	103827178	+	0	NA	exon (NM_024747, exon 1 of 1)	exon (NM_024747, exon 1 of 1)	218	NM_024747	79803	Hs.125133	NM_024747	ENSG00000166189	HPS6	BLOC2S3	HPS6, biogenesis of lysosomal organelles complex 2 subunit 3	protein-coding
778	chr18	9417773	9423631	+	0	NA	Intergenic	Intergenic	-54828	NM_006788	10928	Hs.528993	NM_006788	ENSG00000017797	RALBP1	RIP1|RLIP1|RLIP76	ralA binding protein 1	protein-coding
149	chr7	100268833	100276092	+	0	NA	intron (NM_005273, intron 1 of 9)	CpG	1099	NM_005273	2783	Hs.185172	NM_005273	ENSG00000172354	GNB2	-	G protein subunit beta 2	protein-coding
953	chr2	19983347	19988711	+	0	NA	Intergenic	Intergenic	-82586	NR_033875	400946	Hs.289062	NR_033875	ENSG00000228784	LINC00954	-	long intergenic non-protein coding RNA 954	ncRNA
499	chr6	43765028	43768584	+	0	NA	Intergenic	Intergenic	27084	NM_001287044	7422	Hs.73793	NM_003376	ENSG00000112715	VEGFA	MVCD1|VEGF|VPF	vascular endothelial growth factor A	protein-coding
749	chr20	42937698	42940576	+	0	NA	intron (NM_001080472, intron 1 of 1)	intron (NM_001080472, intron 1 of 1)	755	NM_001080472	128486	Hs.632269	NM_001080472	ENSG00000197296	FITM2	C20orf142|Fit2|dJ881L22.2	fat storage inducing transmembrane protein 2	protein-coding
708	chr1	91867198	91872369	+	0	NA	intron (NM_001017975, intron 1 of 38)	intron (NM_001017975, intron 1 of 38)	643	NM_001017975	164045	Hs.454818	NM_001017975	ENSG00000162669	HFM1	MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase	HFM1, ATP dependent DNA helicase homolog	protein-coding
120	chr9	95438677	95440565	+	0	NA	Intergenic	Intergenic	-7074	NM_022755	64768	Hs.459896	NM_022755	ENSG00000127080	IPPK	C9orf12|INSP5K2|IP5K|IPK1|bA476B13.1	inositol-pentakisphosphate 2-kinase	protein-coding
883	chr1	156425570	156428305	+	0	NA	Intergenic	CpG	-27597	NM_006365	10485	Hs.380027	NM_006365	ENSG00000125462	C1orf61	CROC4	chromosome 1 open reading frame 61	protein-coding
140	chr15	85075879	85080362	+	0	NA	intron (NR_003661, intron 5 of 5)	L1MEg|LINE|L1	-18042	NR_003246	374650	Hs.454625	NM_198079		GOLGA6L5P	GOLGA6L5|GOLGA6L8	golgin A6 family-like 5, pseudogene	pseudo
592	chr19	18538561	18554269	+	0	NA	exon (NM_001253389, exon 6 of 8)	exon (NM_001253389, exon 6 of 8)	1704	NM_001253389	51477	Hs.405873	NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
213	chr20	48327193	48332470	+	0	NA	intron (NM_004776, intron 1 of 8)	CpG	590	NM_004776	9334	Hs.370487	NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
539	chr7	128043388	128051854	+	0	NA	intron (NM_183243, intron 1 of 14)	intron (NM_183243, intron 1 of 14)	-1597	NM_001142573	3614	Hs.654401	NM_000883	ENSG00000106348	IMPDH1	IMPD|IMPD1|IMPDH-I|LCA11|RP10|sWSS2608	inosine monophosphate dehydrogenase 1	protein-coding
349	chr16	3027416	3035158	+	0	NA	promoter-TSS (NM_182687)	promoter-TSS (NM_182687)	-747	NM_182687	9088	Hs.732385	NM_004203	ENSG00000127564	PKMYT1	MYT1|PPP1R126	protein kinase, membrane associated tyrosine/threonine 1	protein-coding
315	chr15	89560353	89563249	+	0	NA	Intergenic	Intergenic	-69580	NM_152924	11057	Hs.122337	NM_007011	ENSG00000140526	ABHD2	HS1-2|LABH2|PHPS1-2	abhydrolase domain containing 2	protein-coding
439	chr3	47751127	47771753	+	0	NA	intron (NM_003074, intron 7 of 27)	AluSx|SINE|Alu	-58256	NR_145791	109623484		NR_145791		SNORD146	-	small nucleolar RNA, C/D box 146	snoRNA
363	chr13	27665825	27679489	+	0	NA	intron (NM_182488, intron 3 of 8)	L1ME3C|LINE|L1	-27013	NR_046547	100874070	Hs.524923	NR_046547		USP12-AS1	-	USP12 antisense RNA 1	ncRNA
54	chr10	6510693	6519168	+	0	NA	intron (NM_001282645, intron 11 of 16)	AluSx1|SINE|Alu	107333	NM_006257	5588	Hs.498570	NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
294	chr3	195580216	195585096	+	0	NA	intron (NR_134939, intron 1 of 1)	intron (NR_134939, intron 1 of 1)	-1557	NR_134940	101929697	Hs.551750	NR_134939		LINC01983	-	long intergenic non-protein coding RNA 1983	ncRNA
514	chr2	171872985	171880526	+	0	NA	intron (NM_001136554, intron 12 of 20)	intron (NM_001136554, intron 12 of 20)	46728	NM_001136555	9874	Hs.744917	NM_012290	ENSG00000198586	TLK1	PKU-beta	tousled like kinase 1	protein-coding
745	chr20	4014792	4020175	+	0	NA	Intergenic	L1MC4a|LINE|L1	-21245	NM_007219	11237	Hs.547576	NM_007219	ENSG00000101236	RNF24	G1L	ring finger protein 24	protein-coding
287	chr19	45669770	45693897	+	0	NA	promoter-TSS (NM_024108)	promoter-TSS (NM_024108)	-170	NM_212550	388552	Hs.103902	NM_212550	ENSG00000189114	BLOC1S3	BLOS3|HPS8|RP	biogenesis of lysosomal organelles complex 1 subunit 3	protein-coding
308	chr6	30557331	30560078	+	0	NA	3' UTR (NM_001090, exon 24 of 24).2	3' UTR (NM_001090, exon 24 of 24).2	6595	NR_030615	100126314		NR_030615	ENSG00000216101	MIR877	MIRN877|hsa-mir-877|miRNA877|mir-877	microRNA 877	ncRNA
879	chr20	48760472	48772678	+	0	NA	intron (NM_001162505, intron 1 of 5)	intron (NM_001162505, intron 1 of 5)	3760	NM_199129	387521	Hs.744839	NM_199129	ENSG00000240849	TMEM189	KUA	transmembrane protein 189	protein-coding
270	chr19	6108161	6114762	+	0	NA	promoter-TSS (NM_134433)	promoter-TSS (NM_134433)	-797	NM_000635	5990	Hs.465709	NM_000635	ENSG00000087903	RFX2	-	regulatory factor X2	protein-coding
866	chrX	154269731	154289665	+	0	NA	intron (NM_023934, intron 3 of 4)	intron (NM_023934, intron 3 of 4)	19849	NM_001018025	4515	Hs.6917	NM_014221	ENSG00000214827	MTCP1	P13MTCP1|p8MTCP1	mature T cell proliferation 1	protein-coding
901	chr3	196293523	196300128	+	0	NA	intron (NM_001105573, intron 1 of 2)	intron (NM_001105573, intron 1 of 2)	1100	NM_001105573	200933	Hs.169815	NM_001105573	ENSG00000174013	FBXO45	Fbx45	F-box protein 45	protein-coding
45	chr16	30364074	30370127	+	0	NA	promoter-TSS (NM_006110)	promoter-TSS (NM_006110)	-418	NM_006110	10421	Hs.202677	NM_006110	ENSG00000169217	CD2BP2	FWP010|LIN1|PPP1R59|Snu40|U5-52K	CD2 cytoplasmic tail binding protein 2	protein-coding
688	chr6	13610890	13619033	+	0	NA	promoter-TSS (NM_001317724)	promoter-TSS (NM_001317724)	-598	NM_001317724	51406	Hs.306242	NM_016167	ENSG00000225921	NOL7	C6orf90|PQBP3|RARG-1|dJ223E5.2	nucleolar protein 7	protein-coding
96	chr1	167296694	167300106	+	0	NA	5' UTR (NM_001198783, exon 1 of 16)	5' UTR (NM_001198783, exon 1 of 16)	119	NM_001198783	5451	Hs.283402	NM_002697	ENSG00000143190	POU2F1	OCT1|OTF1|oct-1B	POU class 2 homeobox 1	protein-coding
692	chr11	63683073	63688860	+	0	NA	Intergenic	CpG	-1650	NM_173587	283248	Hs.98788	NM_173587	ENSG00000167771	RCOR2	-	REST corepressor 2	protein-coding
971	chr17	29148024	29155409	+	0	NA	promoter-TSS (NM_015986)	promoter-TSS (NM_015986)	62	NM_015986	51379	Hs.649372	NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor like factor 3	protein-coding
825	chr1	15835148	15861170	+	0	NA	intron (NM_032996, intron 1 of 8)	LTR13A|LTR|ERVK	2781	NM_001229	842	Hs.329502	NM_001229	ENSG00000132906	CASP9	APAF-3|APAF3|ICE-LAP6|MCH6|PPP1R56	caspase 9	protein-coding
486	chr17	71087534	71089447	+	0	NA	intron (NM_001352691, intron 1 of 10)	intron (NM_001352691, intron 1 of 10)	363	NM_001352691	201266	Hs.221127	NM_139177	ENSG00000133195	SLC39A11	C17orf26|ZIP-11|ZIP11	solute carrier family 39 member 11	protein-coding
272	chr2	200714797	200716791	+	0	NA	5' UTR (NM_001350854, exon 1 of 5)	5' UTR (NM_001350854, exon 1 of 5)	102	NM_001350853	348751	Hs.734578	NM_001350853	ENSG00000226124	FTCDNL1	FONG	formiminotransferase cyclodeaminase N-terminal like	protein-coding
214	chr22	23348814	23359164	+	0	NA	Intergenic	AluJb|SINE|Alu	-58551	NM_002073	2781	Hs.584760	NM_002073	ENSG00000128266	GNAZ	gz-alpha	G protein subunit alpha z	protein-coding
407	chr3	52006037	52011825	+	0	NA	promoter-TSS (NM_001316331)	promoter-TSS (NM_001316331)	-111	NM_015407	25864	Hs.534400	NM_015407	ENSG00000248487	ABHD14A	DORZ1	abhydrolase domain containing 14A	protein-coding
997	chr1	247091396	247097247	+	0	NA	intron (NM_001323343, intron 1 of 35)	intron (NM_001323343, intron 1 of 35)	405	NM_015446	25909	Hs.300887	NM_015446	ENSG00000153207	AHCTF1	ELYS|MST108|MSTP108|TMBS62	AT-hook containing transcription factor 1	protein-coding
47	chr12	69186199	69187945	+	0	NA	Intergenic	Intergenic	12202	NR_073494	100130075	Hs.744781	NR_073494		LOC100130075	-	SUZ RNA binding domain containing 1 pseudogene	pseudo
501	chr9	32997116	33003972	+	0	NA	intron (NM_001195251, intron 1 of 8)	AluSx|SINE|Alu	1030	NR_036579	54840	Hs.20158	NM_017692	ENSG00000137074	APTX	AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT	aprataxin	protein-coding
965	chr5	149226599	149234522	+	0	NA	3' UTR (NM_001172699, exon 11 of 11)	3' UTR (NM_001172699, exon 11 of 11)	79057	NM_001172699	133522	Hs.483816	NM_133263	ENSG00000155846	PPARGC1B	ERRL1|PERC|PGC-1(beta)|PGC1B	PPARG coactivator 1 beta	protein-coding
546	chr6	15095705	15099449	+	0	NA	Intergenic	Intergenic	-148629	NM_004973	3720	Hs.269059	NM_004973	ENSG00000008083	JARID2	JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
712	chr17	45885338	45890455	+	0	NA	intron (NM_145798, intron 18 of 22)	intron (NM_145798, intron 18 of 22)	11251	NM_145798	114881	Hs.463320	NM_017731	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein like 7	protein-coding
615	chr6	25697990	25700166	+	0	NA	intron (NM_006998, intron 10 of 10)	intron (NM_006998, intron 10 of 10)	27712	NM_170745	221613	Hs.406739	NM_170745	ENSG00000164508	HIST1H2AA	H2AA|H2AFR|TH2A|bA317E16.2	histone cluster 1 H2A family member a	protein-coding
930	chr1	65894269	65896099	+	0	NA	intron (NM_001003679, intron 2 of 19)	intron (NM_001003679, intron 2 of 19)	8785	NM_001198681	54741	Hs.23581	NM_017526	ENSG00000213625	LEPROT	LEPR|OB-RGRP|OBRGRP|VPS55	leptin receptor overlapping transcript	protein-coding
167	chr12	92732993	92739073	+	0	NA	Intergenic	HAL1|LINE|L1	-79274	NR_027932	574028	Hs.730377	NM_001025233	ENSG00000257127	CLLU1	-	chronic lymphocytic leukemia up-regulated 1	ncRNA
610	chr10	29106584	29116887	+	0	NA	Intergenic	Intergenic	-23602	NM_001278522	283080		NM_001278522		C10orf126	bA492M23.1	chromosome 10 open reading frame 126	protein-coding
524	chr19	18651458	18656995	+	0	NA	intron (NM_001308373, intron 1 of 8)	CpG	180	NM_001308373	23770	Hs.173464	NM_012181	ENSG00000105701	FKBP8	FKBP38|FKBPr38	FK506 binding protein 8	protein-coding
811	chr17	74174713	74177516	+	0	NA	intron (NM_052916, intron 2 of 18)	intron (NM_052916, intron 2 of 18)	-38734	NM_001454	2302	Hs.651204	NM_001454	ENSG00000129654	FOXJ1	FKHL13|HFH-4|HFH4	forkhead box J1	protein-coding
197	chr11	77299742	77302002	+	0	NA	5' UTR (NM_173039, exon 1 of 3)	5' UTR (NM_173039, exon 1 of 3)	192	NM_173039	282679	Hs.503345	NM_173039	ENSG00000178301	AQP11	AQPX1	aquaporin 11	protein-coding
51	chr10	99443154	99451867	+	0	NA	promoter-TSS (NM_021732)	promoter-TSS (NM_021732)	-495	NM_021732	60370	Hs.23918	NM_021732	ENSG00000119986	AVPI1	PP5395|VIP32|VIT32	arginine vasopressin induced 1	protein-coding
764	chr6	27827578	27837716	+	0	NA	promoter-TSS (NM_003511)	promoter-TSS (NM_003511)	-460	NM_003511	8332	Hs.233568	NM_003511	ENSG00000276903	HIST1H2AL	H2A.i|H2A/i|H2AFI|dJ193B12.9	histone cluster 1 H2A family member l	protein-coding
661	chr2	219128523	219171878	+	0	NA	intron (NM_001321433, intron 1 of 12)	intron (NM_001321433, intron 1 of 12)	1372	NM_001321427	64114	Hs.591605	NM_022152	ENSG00000135926	TMBIM1	LFG3|MST100|MSTP100|PP1201|RECS1	transmembrane BAX inhibitor motif containing 1	protein-coding
303	chr3	48097029	48100506	+	0	NA	intron (NM_030885, intron 1 of 3)	SVA_F|Other|Other	32002	NM_030885	4134	Hs.517949	NM_002375	ENSG00000047849	MAP4	-	microtubule associated protein 4	protein-coding
584	chr1	113430281	113432753	+	0	NA	Intergenic	MER31-int|LTR|ERV1	-34455	NR_002796	246182	Hs.647691	NR_002796		AKR7A2P1	AFARP1	aldo-keto reductase family 7 member A2 pseudogene 1	pseudo
654	chr8	146072779	146075333	+	0	NA	Intergenic	Intergenic	4396	NM_014066	28991	Hs.493218	NM_014066	ENSG00000170619	COMMD5	HCARG|HT002	COMM domain containing 5	protein-coding
591	chr15	90724525	90737787	+	0	NA	intron (NM_001324030, intron 1 of 13)	AluSg|SINE|Alu	3004	NM_020210	10509	Hs.474935	NM_020210	ENSG00000185033	SEMA4B	SEMAC|SemC	semaphorin 4B	protein-coding
173	chr21	44596297	44599471	+	0	NA	Intergenic	Intergenic	7538	NM_001320719	102724652	Hs.184085	NM_001314050	ENSG00000276076	CRYAA2	CRYAA	crystallin alpha A2	protein-coding
562	chr3	169937767	169943433	+	0	NA	intron (NM_002740, intron 1 of 17)	CpG	380	NM_002740	5584	Hs.478199	NM_002740	ENSG00000163558	PRKCI	DXS1179E|PKCI|nPKC-iota	protein kinase C iota	protein-coding
293	chr6	84682165	84690126	+	0	NA	Intergenic	MER4-int|LTR|ERV1	-57233	NM_001346542	112609	Hs.370055	NM_138409	ENSG00000135324	MRAP2	C6orf117|bA51G5.2	melanocortin 2 receptor accessory protein 2	protein-coding
168	chr19	47130813	47134334	+	0	NA	Intergenic	MIRb|SINE|MIR	-4219	NM_000960	5739	Hs.458324	NM_000960	ENSG00000160013	PTGIR	IP|PRIPR	prostaglandin I2 receptor	protein-coding
442	chr14	100572492	100576204	+	0	NA	intron (NM_001330221, intron 3 of 13)	intron (NM_001330221, intron 3 of 13)	1503	NR_039601	100616247		NR_039601	ENSG00000265154	MIR151B	-	microRNA 151b	ncRNA
494	chr17	74257902	74275612	+	0	NA	3' UTR (NM_182565, exon 3 of 3)	3' UTR (NM_182565, exon 3 of 3)	5471	NM_182565	283991	Hs.744981	NM_182565	ENSG00000185262	UBALD2	FAM100B	UBA like domain containing 2	protein-coding
61	chr3	32532188	32550219	+	0	NA	intron (NM_017801, intron 1 of 3)	intron (NM_017801, intron 1 of 3)	3200	NM_017801	54918	Hs.380627	NM_017801	ENSG00000091317	CMTM6	CKLFSF6|PRO2219	CKLF like MARVEL transmembrane domain containing 6	protein-coding
979	chr11	67117358	67127119	+	0	NA	intron (NR_024469, intron 2 of 3)	intron (NR_024469, intron 2 of 3)	-1171	NR_046413	57804	Hs.523829	NM_021173	ENSG00000175482	POLD4	POLDS|p12	DNA polymerase delta 4, accessory subunit	protein-coding
528	chr22	29588134	29594610	+	0	NA	Intergenic	Intergenic	-10529	NM_001267895	129080	Hs.289106	NM_133455	ENSG00000186998	EMID1	EMI5|EMU1	EMI domain containing 1	protein-coding
399	chr22	22163443	22165259	+	0	NA	intron (NM_138957, intron 1 of 7)	intron (NM_138957, intron 1 of 7)	57619	NM_138957	5594	Hs.431850	NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
65	chr16	29971206	29975754	+	0	NA	intron (NM_194280, intron 1 of 5)	CpG	129	NM_001083613	124446	Hs.460574	NM_194280	ENSG00000149932	TMEM219	IGFBP-3R	transmembrane protein 219	protein-coding
320	chr5	70827574	70830389	+	0	NA	intron (NM_018429, intron 26 of 38)	L1MB7|LINE|L1	-54134	NM_022132	64087	Hs.604789	NM_022132	ENSG00000131844	MCCC2	MCCB	methylcrotonoyl-CoA carboxylase 2	protein-coding
2	chr5	96033606	96042289	+	0	NA	promoter-TSS (NM_001330634)	promoter-TSS (NM_001330634)	-417	NM_001330634	831	Hs.436186	NM_001750	ENSG00000153113	CAST	BS-17|PLACK	calpastatin	protein-coding
371	chr10	104686714	104688792	+	0	NA	TTS (NM_199077)	TTS (NM_199077)	9678	NM_199077	54805	Hs.643509	NM_017649	ENSG00000148842	CNNM2	ACDP2|HOMG6|HOMGSMR	cyclin and CBS domain divalent metal cation transport mediator 2	protein-coding
729	chr9	4938166	4940239	+	0	NA	Intergenic	Intergenic	-45884	NM_001322194	3717	Hs.656213	NM_004972	ENSG00000096968	JAK2	JTK10|THCYT3	Janus kinase 2	protein-coding
810	chr1	43470631	43475746	+	0	NA	Intergenic	CpG	-48341	NM_006516	6513	Hs.473721	NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
587	chr1	109718225	109720241	+	0	NA	intron (NM_001284352, intron 6 of 20)	SVA_D|Other|Other	-9938	NM_001284353	57535	Hs.708190	NM_020775	ENSG00000116299	KIAA1324	EIG121	KIAA1324	protein-coding
962	chr6	15518951	15526149	+	0	NA	TTS (NM_001267040)	TTS (NM_001267040)	140739	NM_032122	84062	Hs.571148	NM_032122	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
181	chr5	179914630	179931357	+	0	NA	intron (NM_001303241, intron 3 of 13)	AluJo|SINE|Alu	1594	NM_001303241	57472	Hs.608380	NM_015455	ENSG00000113300	CNOT6	CCR4|Ccr4a	CCR4-NOT transcription complex subunit 6	protein-coding
720	chr21	38317481	38319596	+	0	NA	intron (NM_000411, intron 2 of 11)	AluJo|SINE|Alu	16120	NM_001352518	3141	Hs.371350	NM_000411	ENSG00000159267	HLCS	HCS	holocarboxylase synthetase	protein-coding
777	chr5	173127828	173133120	+	0	NA	intron (NR_146727, intron 2 of 2)	intron (NR_146727, intron 2 of 2)	14012	NR_146727	105377736	Hs.582570	NR_146727	ENSG00000253428	LINC01942	-	long intergenic non-protein coding RNA 1942	ncRNA
174	chr15	85140419	85145401	+	0	NA	Intergenic	AluSx|SINE|Alu	-1339	NM_181877	54993	Hs.594023	NM_017894	ENSG00000176371	ZSCAN2	ZFP29|ZNF854	zinc finger and SCAN domain containing 2	protein-coding
227	chr8	95759519	95762760	+	0	NA	intron (NM_181787, intron 6 of 18)	THE1B|LTR|ERVL-MaLR	29036	NM_181787	286148	Hs.567828	NM_181787	ENSG00000156162	DPY19L4	-	dpy-19 like 4	protein-coding
699	chr2	61752266	61772863	+	0	NA	intron (NM_003400, intron 1 of 24)	intron (NM_003400, intron 1 of 24)	2854	NM_003400	7514	Hs.370770	NM_003400	ENSG00000082898	XPO1	CRM1|emb|exp1	exportin 1	protein-coding
265	chr2	112390545	112393094	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	136892	NR_039929	100616165		NR_039929	ENSG00000266063	MIR4771-2	-	microRNA 4771-2	ncRNA
240	chr11	94832388	94846633	+	0	NA	intron (NM_015036, intron 1 of 1)	intron (NM_015036, intron 1 of 1)	16536	NM_015036	23052	Hs.167115	NM_015036	ENSG00000149218	ENDOD1	-	endonuclease domain containing 1	protein-coding
288	chr3	135995321	135997686	+	0	NA	intron (NM_000532, intron 5 of 14)	L1PBa|LINE|L1	27336	NM_000532	5096	Hs.63788	NM_000532	ENSG00000114054	PCCB	-	propionyl-CoA carboxylase subunit beta	protein-coding
714	chr10	97881602	97893346	+	0	NA	Intergenic	Intergenic	-1998	NM_001278524	9849	Hs.600823	NM_014803	ENSG00000177853	ZNF518A	ZNF518	zinc finger protein 518A	protein-coding
329	chr6	150026709	150057019	+	0	NA	Intergenic	L1MC3|LINE|L1	-2472	NM_001270519	9113	Hs.549084	NM_004690	ENSG00000131023	LATS1	WARTS|wts	large tumor suppressor kinase 1	protein-coding
836	chr1	22191483	22194594	+	0	NA	intron (NM_005529, intron 33 of 96)	MLT1K|LTR|ERVL-MaLR	54280	NM_001013693	401944	Hs.745158	NM_001013693	ENSG00000187942	LDLRAD2	-	low density lipoprotein receptor class A domain containing 2	protein-coding
470	chr16	2259986	2269358	+	0	NA	exon (NM_001042371, exon 1 of 2)	exon (NM_001042371, exon 1 of 2)	150	NM_001042371	283871	Hs.442634	NM_001042371	ENSG00000184207	PGP	AUM|G3PP|PGPase	phosphoglycolate phosphatase	protein-coding
345	chr21	35316366	35324882	+	0	NA	intron (NR_134558, intron 2 of 2)	intron (NR_134558, intron 2 of 2)	17106	NR_134558	100506334	Hs.532855	NM_207472	ENSG00000237945	LINC00649	-	long intergenic non-protein coding RNA 649	ncRNA
81	chr1	27992160	27996798	+	0	NA	intron (NM_022872, intron 4 of 4)	AluSx|SINE|Alu	4245	NM_002038	2537	Hs.523847	NM_002038	ENSG00000126709	IFI6	6-16|FAM14C|G1P3|IFI-6-16|IFI616	interferon alpha inducible protein 6	protein-coding
177	chr3	13438930	13477933	+	0	NA	intron (NM_024923, intron 1 of 39)	intron (NM_024923, intron 1 of 39)	3388	NM_024923	23225	Hs.475525	NM_024923	ENSG00000132182	NUP210	GP210|POM210	nucleoporin 210	protein-coding
910	chr11	93393176	93398585	+	0	NA	intron (NM_033395, intron 1 of 29)	L1MC4a|LINE|L1	1064	NM_033395	85459	Hs.458418	NM_033395	ENSG00000166004	CEP295	KIAA1731	centrosomal protein 295	protein-coding
352	chr3	170415424	170423515	+	0	NA	intron (NR_135556, intron 2 of 5)	Helitron1Na_Mam|RC|Helitron	-115606	NM_020949	57709	Hs.596660	NM_020949	ENSG00000013293	SLC7A14	PPP1R142	solute carrier family 7 member 14	protein-coding
716	chr13	99802655	99807289	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-47707	NM_001144072	337867	Hs.508545	NM_177967	ENSG00000134882	UBAC2	PHGDHL1	UBA domain containing 2	protein-coding
920	chr3	53162090	53167116	+	0	NA	promoter-TSS (NM_052859)	promoter-TSS (NM_052859)	-133	NM_052859	91869	Hs.631910	NM_052859	ENSG00000163933	RFT1	CDG1N	RFT1 homolog	protein-coding
157	chr12	116523209	116534348	+	0	NA	intron (NM_015335, intron 4 of 30)	AluSx|SINE|Alu	57681	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
977	chr10	4887052	4894558	+	0	NA	TTS (NM_001271021)	TTS (NM_001271021)	22436	NM_001040177	83592	Hs.657944	NM_031436	ENSG00000165568	AKR1E2	AKR1CL2|AKRDC1|LoopADR|TAKR|hTSP|htAKR	aldo-keto reductase family 1 member E2	protein-coding
52	chr9	33402434	33404161	+	0	NA	promoter-TSS (NR_134515)	promoter-TSS (NR_134515)	-617	NM_001318156	364	Hs.455323	NM_001170	ENSG00000165269	AQP7	AQP7L|AQPap|GLYCQTL	aquaporin 7	protein-coding
114	chr8	131514617	131516905	+	0	NA	Intergenic	LTR8A|LTR|ERV1	-59855	NM_018482	50807	Hs.655552	NM_018482	ENSG00000153317	ASAP1	AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein-coding
968	chr14	70113148	70128045	+	0	NA	intron (NM_014734, intron 1 of 5)	intron (NM_014734, intron 1 of 5)	42286	NM_014734	9766	Hs.440025	NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
756	chr4	14855713	14861117	+	0	NA	intron (NR_126435, intron 2 of 6)	intron (NR_126435, intron 2 of 6)	31378	NR_126435	201853	Hs.551051	NR_126435	ENSG00000248360	LINC00504	-	long intergenic non-protein coding RNA 504	ncRNA
651	chr6	140261027	140264055	+	0	NA	Intergenic	MER44C|DNA|TcMar-Tigger	-34915	NR_121623	100507477	Hs.179213	NR_121622	ENSG00000236013	LOC100507477	-	uncharacterized LOC100507477	ncRNA
402	chr19	10826896	10832452	+	0	NA	TTS (NR_030368)	TTS (NR_030368)	594	NR_030368	693223		NR_030368	ENSG00000207972	MIR638	MIRN638|hsa-mir-638	microRNA 638	ncRNA
130	chr4	76645931	76653255	+	0	NA	promoter-TSS (NM_003715)	promoter-TSS (NM_003715)	-113	NM_001290049	8615	Hs.744877	NM_003715	ENSG00000138768	USO1	P115|TAP|VDP	USO1 vesicle transport factor	protein-coding
913	chr2	73219044	73221494	+	0	NA	intron (NM_001330404, intron 9 of 13)	intron (NM_001330404, intron 9 of 13)	66053	NM_001330411	94097	Hs.368171	NM_144579	ENSG00000144040	SFXN5	BBG-TCC|SLC56A5	sideroflexin 5	protein-coding
639	chr19	10370194	10372006	+	0	NA	TTS (NM_015956)	TTS (NM_015956)	8460	NM_146388	51073	Hs.279652	NM_015956	ENSG00000105364	MRPL4	CGI-28|L4mt	mitochondrial ribosomal protein L4	protein-coding
765	chr16	67966663	67972799	+	0	NA	intron (NM_002801, intron 4 of 7)	CpG-9426	1049	NM_002801	5699	Hs.9661	NM_002801	ENSG00000205220	PSMB10	LMP10|MECL1|beta2i	proteasome subunit beta 10	protein-coding
975	chr20	35393735	35409006	+	0	NA	intron (NM_001145317, intron 1 of 9)	intron (NM_001145317, intron 1 of 9)	784	NM_024918	79980	Hs.632268	NM_024918	ENSG00000149636	DSN1	C20orf172|KNL3|MIS13|dJ469A13.2|hKNL-3	DSN1 homolog, MIS12 kinetochore complex component	protein-coding
857	chr8	23028168	23031043	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-8062	NM_003840	8793	Hs.213467	NM_003840	ENSG00000173530	TNFRSF10D	CD264|DCR2|TRAIL-R4|TRAILR4|TRUNDD	TNF receptor superfamily member 10d	protein-coding
395	chr15	89609501	89643319	+	0	NA	Intergenic	Intergenic	-4971	NM_152924	11057	Hs.122337	NM_007011	ENSG00000140526	ABHD2	HS1-2|LABH2|PHPS1-2	abhydrolase domain containing 2	protein-coding
457	chr22	19246164	19248447	+	0	NA	intron (NM_001835, intron 2 of 31)	Tigger1|DNA|TcMar-Tigger	31934	NM_001835	8218	Hs.368266	NM_001835	ENSG00000070371	CLTCL1	CHC22|CLH22|CLTCL|CLTD	clathrin heavy chain like 1	protein-coding
14	chr6	26658392	26662213	+	0	NA	promoter-TSS (NM_001242799)	promoter-TSS (NM_001242799)	-322	NM_001242798	79692	Hs.126280	NM_024639	ENSG00000181315	ZNF322	HCG12|ZNF322A|ZNF388|ZNF489	zinc finger protein 322	protein-coding
739	chr5	134638604	134641020	+	0	NA	intron (NM_001277348, intron 3 of 5)	intron (NM_001277348, intron 3 of 5)	-55945	NR_037895	340073	Hs.434422	NR_037895	ENSG00000249647	C5orf66-AS2	-	C5orf66 antisense RNA 2	ncRNA
246	chrX	129472356	129475550	+	0	NA	promoter-TSS (NM_001282198)	promoter-TSS (NM_001282198)	91	NR_104107	9016	Hs.194686	NM_003951	ENSG00000102078	SLC25A14	BMCP1|UCP5	solute carrier family 25 member 14	protein-coding
101	chr2	10455540	10457311	+	0	NA	intron (NM_134421, intron 1 of 5)	intron (NM_134421, intron 1 of 5)	12599	NM_134421	3241	Hs.580427	NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
856	chr7	98708941	98711239	+	0	NA	intron (NM_181349, intron 1 of 17)	L1M4|LINE|L1	31653	NM_181349	57154	Hs.189329	NM_020429	ENSG00000198742	SMURF1	-	SMAD specific E3 ubiquitin protein ligase 1	protein-coding
518	chr7	91869799	91878054	+	0	NA	intron (NM_001350692, intron 1 of 17)	intron (NM_001350692, intron 1 of 17)	1488	NM_001350685	889	Hs.531987	NM_004912	ENSG00000001631	KRIT1	CAM|CCM1	KRIT1, ankyrin repeat containing	protein-coding
351	chr1	144919335	144930876	+	0	NA	intron (NM_001002812, intron 5 of 22)	intron (NM_001002812, intron 5 of 22)	6927	NM_001350520	9659	Hs.584841	NM_014644	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
845	chr17	47501012	47503623	+	0	NA	Intergenic	AluJb|SINE|Alu	-10050	NM_001281497	5245	Hs.514303	NM_002634	ENSG00000167085	PHB	HEL-215|HEL-S-54e|PHB1	prohibitin	protein-coding
874	chr19	14190043	14194405	+	0	NA	TTS (NM_001277378)	TTS (NM_001277378)	4383	NM_001277378	646457	Hs.569971	NM_001277378	ENSG00000188032	C19orf67	-	chromosome 19 open reading frame 67	protein-coding
864	chr12	112120492	112126381	+	0	NA	promoter-TSS (NM_025247)	promoter-TSS (NM_025247)	364	NM_006768	8315	Hs.530940	NM_006768	ENSG00000089234	BRAP	BRAP2|IMP|RNF52	BRCA1 associated protein	protein-coding
239	chr16	28135011	28136697	+	0	NA	intron (NM_001270940, intron 14 of 24)	MIRb|SINE|MIR	-61024	NM_001323900	146395	Hs.91910	NM_144675	ENSG00000169181	GSG1L	PRO19651	GSG1 like	protein-coding
596	chr2	11418477	11421277	+	0	NA	intron (NM_004850, intron 3 of 32)	L1MC1|LINE|L1	64834	NM_004850	9475	Hs.681743	NM_004850	ENSG00000134318	ROCK2	ROCK-II	Rho associated coiled-coil containing protein kinase 2	protein-coding
493	chr5	134450591	134456204	+	0	NA	intron (NM_001277348, intron 2 of 5)	intron (NM_001277348, intron 2 of 5)	-77660	NR_105049	101927953	Hs.436898	NR_105049	ENSG00000249082	C5orf66-AS1	Epist	C5orf66 antisense RNA 1	ncRNA
614	chr1	244813869	244819706	+	0	NA	intron (NR_123735, intron 1 of 4)	CpG	437	NR_123735	51029	Hs.498317	NM_016076	ENSG00000121644	DESI2	C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1	desumoylating isopeptidase 2	protein-coding
803	chr5	126178533	126184613	+	0	NA	Intergenic	Intergenic	68728	NM_001198557	4001	Hs.89497	NM_005573	ENSG00000113368	LMNB1	ADLD|LMN|LMN2|LMNB	lamin B1	protein-coding
398	chr22	30699647	30702592	+	0	NA	intron (NM_001204240, intron 1 of 8)	L2c|LINE|L2	-15503	NM_001037666	652968	Hs.444950	NM_001037666	ENSG00000239282	CASTOR1	GATSL3	cytosolic arginine sensor for mTORC1 subunit 1	protein-coding
574	chr7	64446982	64477663	+	0	NA	intron (NM_001007253, intron 1 of 1)	MER21C|LTR|ERVL	4802	NR_145414	2086	Hs.250693	NM_001007253	ENSG00000213462	ERV3-1	ERV-R|ERV3|ERVR|HERV-R|HERVR|envR	endogenous retrovirus group 3 member 1, envelope	protein-coding
779	chr3	193505102	193507819	+	0	NA	Intergenic	MIR3|SINE|MIR	55338	NR_146718	105374285	Hs.552531	NR_146718		LINC02038	-	long intergenic non-protein coding RNA 2038	ncRNA
218	chr11	64877474	64894093	+	0	NA	promoter-TSS (NM_014205)	promoter-TSS (NM_014205)	-573	NM_014205	741	Hs.121025	NM_014205	ENSG00000174276	ZNHIT2	C11orf5|FON	zinc finger HIT-type containing 2	protein-coding
992	chr22	38963932	38968602	+	0	NA	promoter-TSS (NM_007068)	promoter-TSS (NM_007068)	-66	NM_007068	11144	Hs.339396	NM_007068	ENSG00000100206	DMC1	DMC1H|LIM15|dJ199H16.1	DNA meiotic recombinase 1	protein-coding
813	chr14	20641845	20654778	+	0	NA	Intergenic	Intergenic	-17184	NM_001005503	390439	Hs.554582	NM_001005503	ENSG00000196832	OR11G2	OR14-34	olfactory receptor family 11 subfamily G member 2	protein-coding
43	chr17	8120997	8131780	+	0	NA	non-coding (NR_026951, exon 2 of 3)	non-coding (NR_026951, exon 2 of 3)	973	NR_026951	284029	Hs.121692	NM_173621	ENSG00000178977	LINC00324	C17orf44|NCRNA00324	long intergenic non-protein coding RNA 324	ncRNA
768	chr19	55724997	55730893	+	0	NA	Intergenic	Intergenic	-7071	NM_001161440	5794	Hs.179770	NM_002842	ENSG00000080031	PTPRH	R-PTP-H|SAP1	protein tyrosine phosphatase, receptor type H	protein-coding
831	chr19	49369222	49384529	+	0	NA	exon (NM_014330, exon 2 of 3)	exon (NM_014330, exon 2 of 3)	1226	NM_014330	23645	Hs.631593	NM_014330	ENSG00000087074	PPP1R15A	GADD34	protein phosphatase 1 regulatory subunit 15A	protein-coding
594	chr19	17182583	17189383	+	0	NA	promoter-TSS (NM_004145)	promoter-TSS (NM_004145)	360	NM_001011699	93323	Hs.404088	NM_033417	ENSG00000131351	HAUS8	DGT4|HICE1|NY-SAR-48	HAUS augmin like complex subunit 8	protein-coding
798	chr22	20924742	20928475	+	0	NA	intron (NM_001293234, intron 8 of 16)	intron (NM_001293234, intron 8 of 16)	64273	NM_001293237	51586	Hs.517421	NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
3	chr1	23665195	23673403	+	0	NA	intron (NM_001102398, intron 1 of 10)	intron (NM_001102398, intron 1 of 10)	1558	NM_001297621	10236	Hs.373763	NM_005826	ENSG00000125944	HNRNPR	HNRPR|hnRNP-R	heterogeneous nuclear ribonucleoprotein R	protein-coding
459	chr17	42187640	42189770	+	0	NA	intron (NM_001015053, intron 2 of 26)	intron (NM_001015053, intron 2 of 26)	-4575	NR_136415	105371789	Hs.579304	NR_136415	ENSG00000267638	LOC105371789	-	uncharacterized LOC105371789	ncRNA
830	chr10	124891448	124901700	+	0	NA	exon (NM_001105574, exon 2 of 2)	exon (NM_001105574, exon 2 of 2)	1007	NM_001105574	340784	Hs.531194	NM_001105574	ENSG00000188620	HMX3	NKX-5.1|NKX5.1|Nkx5-1	H6 family homeobox 3	protein-coding
559	chr21	38579108	38583131	+	0	NA	intron (NR_026719, intron 2 of 2)	intron (NR_026719, intron 2 of 2)	315	NR_026719	257203	Hs.505159	NM_148675	ENSG00000230366	DSCR9	NCRNA00038	Down syndrome critical region 9 (non-protein coding)	ncRNA
964	chr3	195916670	195926024	+	0	NA	Intergenic	MIRb|SINE|MIR	16953	NM_001039617	131540	Hs.111591	NM_001039617	ENSG00000163958	ZDHHC19	DHHC19	zinc finger DHHC-type containing 19	protein-coding
152	chr12	48041289	48047647	+	0	NA	Intergenic	Intergenic	55376	NM_001146075	79657	Hs.437855	NM_024604	ENSG00000005175	RPAP3	hSpagh	RNA polymerase II associated protein 3	protein-coding
419	chr22	20782829	20784984	+	0	NA	exon (NM_153334, exon 8 of 14)	exon (NM_153334, exon 8 of 14)	8240	NM_153334	91179	Hs.474251	NM_153334	ENSG00000244486	SCARF2	NSR1|SREC-II|SREC2|SRECRP-1|VDEGS	scavenger receptor class F member 2	protein-coding
509	chr3	47157374	47160335	+	0	NA	intron (NM_001349370, intron 2 of 19)	intron (NM_001349370, intron 2 of 19)	46613	NR_146158	29072	Hs.517941	NM_012271	ENSG00000181555	SETD2	HBP231|HIF-1|HIP-1|HSPC069|HYPB|KMT3A|LLS|SET2|p231HBP	SET domain containing 2	protein-coding
413	chr13	81096567	81111005	+	0	NA	Intergenic	L1MA9|LINE|L1	-188536	NM_005842	10253	Hs.18676	NM_005842	ENSG00000136158	SPRY2	IGAN3|hSPRY2	sprouty RTK signaling antagonist 2	protein-coding
124	chr16	57734002	57736858	+	0	NA	intron (NM_001289163, intron 4 of 16)	intron (NM_001289163, intron 4 of 16)	6717	NM_001289163	84229	Hs.513635	NM_032269	ENSG00000159625	DRC7	C16orf50|CCDC135|CFAP50|FAP50	dynein regulatory complex subunit 7	protein-coding
33	chr1	43307450	43315974	+	0	NA	promoter-TSS (NM_015911)	promoter-TSS (NM_015911)	-532	NM_015911	51058	Hs.20879	NM_015911	ENSG00000164011	ZNF691	Zfp691	zinc finger protein 691	protein-coding
698	chr19	18208223	18210920	+	0	NA	promoter-TSS (NM_001290024)	promoter-TSS (NM_001290024)	55	NM_001290024	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
125	chr3	101236097	101238996	+	0	NA	promoter-TSS (NR_036433)	promoter-TSS (NR_036433)	-165	NR_036433	131909	Hs.518125	NR_036433		FAM172BP	FAM172B	family with sequence similarity 172 member B, pseudogene	pseudo
995	chr15	64235538	64239419	+	0	NA	intron (NM_014326, intron 4 of 11)	intron (NM_014326, intron 4 of 11)	17005	NR_120344	101928988	Hs.673214	NR_120344	ENSG00000259351	LOC101928988	-	uncharacterized LOC101928988	ncRNA
104	chr4	38621675	38624199	+	0	NA	intron (NR_026804, intron 6 of 7)	intron (NR_026804, intron 6 of 7)	-42853	NM_016531	51274	Hs.298658	NM_016531	ENSG00000109787	KLF3	BKLF	Kruppel like factor 3	protein-coding
144	chr20	2819933	2823572	+	0	NA	promoter-TSS (NM_022760)	promoter-TSS (NM_022760)	137	NM_001271168	64773	Hs.29341	NM_022760	ENSG00000132635	PCED1A	C20orf81|FAM113A|bA12M19.1	PC-esterase domain containing 1A	protein-coding
135	chr5	65432282	65448421	+	0	NA	promoter-TSS (NM_139168)	promoter-TSS (NM_139168)	305	NM_001323529	140890	Hs.49367	NM_139168	ENSG00000153914	SREK1	SFRS12|SRrp508|SRrp86	splicing regulatory glutamic acid and lysine rich protein 1	protein-coding
374	chr19	39614621	39618274	+	0	NA	promoter-TSS (NM_005884)	promoter-TSS (NM_005884)	27	NM_001014832	10298	Hs.20447	NM_005884	ENSG00000130669	PAK4	-	p21 (RAC1) activated kinase 4	protein-coding
282	chr1	11764899	11769491	+	0	NA	intron (NM_198545, intron 2 of 6)	AluYc|SINE|Alu	15414	NM_198545	374946	Hs.632364	NM_198545	ENSG00000162490	DRAXIN	AGPA3119|C1orf187|UNQ3119|neucrin	dorsal inhibitory axon guidance protein	protein-coding
843	chr5	94998928	95001170	+	0	NA	intron (NR_125330, intron 2 of 7)	intron (NR_125330, intron 2 of 7)	17466	NM_001131065	317671	Hs.399758	NM_173362	ENSG00000175449	RFESD	-	Rieske Fe-S domain containing	protein-coding
725	chr2	46644508	46676270	+	0	NA	intron (NR_103805, intron 1 of 3)	intron (NR_103805, intron 1 of 3)	4060	NR_103805	101805491	Hs.304781	NR_103805	ENSG00000187600	LINC02583	-	long intergenic non-protein coding RNA 2583	ncRNA
656	chr1	93256580	93259456	+	0	NA	promoter-TSS (NM_001308248)	promoter-TSS (NM_001308248)	-57	NM_001308248	7813	Hs.594434	NM_005665	ENSG00000067208	EVI5	EVI-5|NB4S	ecotropic viral integration site 5	protein-coding
335	chr7	50322101	50324094	+	0	NA	Intergenic	Intergenic	-20582	NM_001291839	10320	Hs.435949	NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
276	chr1	27752476	27758949	+	0	NA	intron (NM_006990, intron 1 of 8)	intron (NM_006990, intron 1 of 8)	36564	NM_005281	2827	Hs.66542	NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
799	chr12	110431524	110439307	+	0	NA	Intergenic	Intergenic	-1221	NM_014776	9815	Hs.434996	NM_014776	ENSG00000139436	GIT2	CAT-2|CAT2|PKL	GIT ArfGAP 2	protein-coding
593	chr1	247530155	247532837	+	0	NA	Intergenic	MER41B|LTR|ERV1	-36254	NM_032752	84838	Hs.168677	NM_032752	ENSG00000162714	ZNF496	NIZP1|ZFP496|ZKSCAN17|ZSCAN49	zinc finger protein 496	protein-coding
870	chr7	100200421	100204371	+	0	NA	promoter-TSS (NR_038910)	promoter-TSS (NR_038910)	-735	NR_038910	100129845	Hs.714123	NR_038910	ENSG00000224729	PCOLCE-AS1	-	PCOLCE antisense RNA 1	ncRNA
369	chr19	49239611	49246759	+	0	NA	TTS (NR_135832)	TTS (NR_135832)	785	NM_017805	54922	Hs.233955	NM_017805	ENSG00000105538	RASIP1	RAIN	Ras interacting protein 1	protein-coding
50	chr18	2947066	2948874	+	0	NA	intron (NM_014646, intron 4 of 19)	MIR3|SINE|MIR	-1349	NR_026659	727896	Hs.673126	NR_026659		LOC727896	-	cysteine and histidine rich domain containing 1 pseudogene	pseudo
416	chr1	226064898	226072571	+	0	NA	intron (NM_014698, intron 1 of 24)	intron (NM_014698, intron 1 of 24)	1686	NM_014698	9725	Hs.119387	NM_014698	ENSG00000196187	TMEM63A	KIAA0792	transmembrane protein 63A	protein-coding
863	chr3	47097855	47100227	+	0	NA	intron (NM_001349370, intron 13 of 19)	intron (NM_001349370, intron 13 of 19)	46009	NR_024046	100129354	Hs.201522	NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
558	chr3	170946966	170954020	+	0	NA	intron (NM_001161561, intron 2 of 31)	intron (NM_001161561, intron 2 of 31)	-125945	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
882	chr14	73775927	73780680	+	0	NA	intron (NM_001005745, intron 5 of 10)	intron (NM_001005745, intron 5 of 10)	-65594	NR_135248	101928123	Hs.660593	NR_135248		LOC101928123	-	uncharacterized LOC101928123	ncRNA
1	chr22	38290515	38294289	+	0	NA	Intergenic	L3|LINE|CR1	-9753	NM_033386	85377	Hs.517610	NM_033386	ENSG00000100139	MICALL1	MICAL-L1|MIRAB13	MICAL like 1	protein-coding
53	chr1	221893679	221900829	+	0	NA	intron (NR_111940, intron 1 of 2)	MER21C|LTR|ERVL	12988	NR_111939	11221	Hs.497822	NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
713	chr5	141686563	141723427	+	0	NA	promoter-TSS (NM_030964)	promoter-TSS (NM_030964)	137	NR_120664	101926941	Hs.658945	NR_120664	ENSG00000231185	SPRY4-AS1	THCAT68	SPRY4 antisense RNA 1	ncRNA
343	chr8	39801788	39804625	+	0	NA	intron (NM_194294, intron 1 of 10)	MER72|LTR|ERV1	10732	NM_194294	169355	Hs.676257	NM_194294	ENSG00000188676	IDO2	INDOL1	indoleamine 2,3-dioxygenase 2	protein-coding
620	chrX	40845555	40847912	+	0	NA	Intergenic	MER74B|LTR|ERVL	-98155	NM_001039591	8239	Hs.77578	NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAM|MRX99|MRXS99F	ubiquitin specific peptidase 9, X-linked	protein-coding
547	chr17	78426649	78430856	+	0	NA	Intergenic	CpG	21652	NM_002522	4884	Hs.514556	NM_002522	ENSG00000171246	NPTX1	NP1	neuronal pentraxin 1	protein-coding
22	chr17	42170902	42176434	+	0	NA	intron (NM_001015053, intron 3 of 26)	intron (NM_001015053, intron 3 of 26)	-19612	NR_136415	105371789	Hs.579304	NR_136415	ENSG00000267638	LOC105371789	-	uncharacterized LOC105371789	ncRNA
261	chr19	39825276	39827599	+	0	NA	intron (NM_004877, intron 1 of 6)	intron (NM_004877, intron 1 of 6)	289	NM_004877	9535	Hs.5210	NM_004877	ENSG00000130755	GMFG	GMF-GAMMA	glia maturation factor gamma	protein-coding
741	chr10	99067793	99105337	+	0	NA	Intergenic	AluSz|SINE|Alu	7543	NM_005479	10023	Hs.126057	NM_005479	ENSG00000165879	FRAT1	-	FRAT1, WNT signaling pathway regulator	protein-coding
534	chr3	49821668	49826597	+	0	NA	promoter-TSS (NM_001242829)	promoter-TSS (NM_001242829)	-159	NM_001006115	9807	Hs.386168	NM_153273	ENSG00000176095	IP6K1	IHPK1|PiUS	inositol hexakisphosphate kinase 1	protein-coding
693	chr15	96468096	96476532	+	0	NA	Intergenic	MIRb|SINE|MIR	-396843	NM_001145155	7026	Hs.347991	NM_021005	ENSG00000185551	NR2F2	ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2	nuclear receptor subfamily 2 group F member 2	protein-coding
262	chr19	1366259	1367719	+	0	NA	intron (NR_024247, intron 8 of 13)	intron (NR_024247, intron 8 of 13)	10666	NR_024247	84939	Hs.515016	NM_032853	ENSG00000160953	MUM1	EXPAND1|HSPC211|MUM-1	melanoma associated antigen (mutated) 1	protein-coding
551	chr22	29277717	29280044	+	0	NA	promoter-TSS (NM_001206998)	promoter-TSS (NM_001206998)	-875	NM_001206998	84133	Hs.604200	NM_032173	ENSG00000183579	ZNRF3	BK747E2.3|RNF203	zinc and ring finger 3	protein-coding
72	chr7	6093362	6100799	+	0	NA	intron (NM_001134335, intron 1 of 14)	intron (NM_001134335, intron 1 of 14)	1780	NM_001134335	27102	Hs.520205	NM_014413	ENSG00000086232	EIF2AK1	HCR|HRI	eukaryotic translation initiation factor 2 alpha kinase 1	protein-coding
696	chr10	82167619	82171864	+	0	NA	intron (NM_001243781, intron 1 of 5)	intron (NM_001243781, intron 1 of 5)	1499	NM_001243781	84293	Hs.500333	NM_032333	ENSG00000122378	FAM213A	Adrx|C10orf58|PAMM	family with sequence similarity 213 member A	protein-coding
897	chr12	494300	500571	+	0	NA	intron (NM_001042603, intron 1 of 27)	intron (NM_001042603, intron 1 of 27)	-1081	NM_001130147	84318	Hs.631656	NM_032358	ENSG00000120647	CCDC77	-	coiled-coil domain containing 77	protein-coding
94	chr3	196694585	196699014	+	0	NA	Intergenic	CpG-19308	-1057	NM_025163	80235	Hs.518403	NM_025163	ENSG00000119227	PIGZ	GPI-MT-IV|PIG-Z|SMP3	phosphatidylinositol glycan anchor biosynthesis class Z	protein-coding
210	chr11	47691770	47696069	+	0	NA	intron (NM_024783, intron 14 of 18)	AluJb|SINE|Alu	-29713	NM_001317232	23788	Hs.269944	NM_014342	ENSG00000109919	MTCH2	HSPC032|MIMP|SLC25A50	mitochondrial carrier 2	protein-coding
807	chr12	53188273	53193313	+	0	NA	promoter-TSS (NM_057088)	promoter-TSS (NM_057088)	-901	NM_057088	3850	Hs.680652	NM_057088	ENSG00000186442	KRT3	CK3|K3	keratin 3	protein-coding
336	chr1	21585189	21591449	+	0	NA	intron (NM_001113348, intron 4 of 18)	L2c|LINE|L2	17864	NM_001113347	1889	Hs.195080	NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
193	chr1	160595268	160598491	+	0	NA	intron (NR_104401, intron 3 of 5)	MIRb|SINE|MIR	20222	NR_104400	6504	Hs.523660	NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
553	chr16	30377456	30385033	+	0	NA	exon (NM_015527, exon 1 of 9)	exon (NM_015527, exon 1 of 9)	278	NM_015527	26000	Hs.632182	NM_015527	ENSG00000169221	TBC1D10B	EPI64B|FP2461	TBC1 domain family member 10B	protein-coding
353	chr1	33453371	33456081	+	0	NA	Intergenic	L3|LINE|CR1	-24312	NM_001300826	127544	Hs.591504	NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
827	chr7	91023768	91026018	+	0	NA	Intergenic	L1M5|LINE|L1	131110	NM_003505	8321	Hs.94234	NM_003505	ENSG00000157240	FZD1	-	frizzled class receptor 1	protein-coding
802	chr15	52106551	52109709	+	0	NA	3' UTR (NM_001142885, exon 9 of 9)	3' UTR (NM_001142885, exon 9 of 9)	-13695	NM_014547	29766	Hs.4998	NM_014547	ENSG00000138594	TMOD3	UTMOD	tropomodulin 3	protein-coding
444	chr2	171131942	171135059	+	0	NA	intron (NM_001083615, intron 7 of 33)	intron (NM_001083615, intron 7 of 33)	73953	NR_110576	101929753	Hs.534101	NR_110576		LOC101929753	-	uncharacterized LOC101929753	ncRNA
30	chr1	113117469	113119926	+	0	NA	intron (NM_138729, intron 11 of 13)	intron (NM_138729, intron 11 of 13)	43064	NM_001308264	54879	Hs.201921	NM_017744	ENSG00000007341	ST7L	FAM4B|ST7R|STLR	suppression of tumorigenicity 7 like	protein-coding
471	chr20	58158464	58160618	+	0	NA	intron (NM_001199505, intron 1 of 12)	(TG)n|Simple_repeat|Simple_repeat	6977	NM_001199505	116154	Hs.473218	NM_080672	ENSG00000087495	PHACTR3	C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ	phosphatase and actin regulator 3	protein-coding
424	chr16	29720041	29725882	+	0	NA	Intergenic	AluY|SINE|Alu	32632	NR_134536	23475	Hs.513484	NM_014298	ENSG00000103485	QPRT	HEL-S-90n|QPRTase	quinolinate phosphoribosyltransferase	protein-coding
522	chr12	111860134	111894614	+	0	NA	intron (NM_001291424, intron 1 of 6)	AluSx|SINE|Alu	4708	NM_001291424	10019	Hs.506784	NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
604	chr5	108070558	108072725	+	0	NA	Intergenic	L2a|LINE|L2	-7679	NR_046368	100652853	Hs.133009	NR_046368	ENSG00000272523	LINC01023	HP07349	long intergenic non-protein coding RNA 1023	ncRNA
852	chr1	1204904	1211303	+	0	NA	intron (NM_194315, intron 1 of 7)	intron (NM_194315, intron 1 of 7)	1131	NM_194458	118424	Hs.191987	NM_058167	ENSG00000160087	UBE2J2	NCUBE-2|NCUBE2|PRO2121	ubiquitin conjugating enzyme E2 J2	protein-coding
296	chr6	42529808	42539502	+	0	NA	intron (NM_001184801, intron 1 of 11)	intron (NM_001184801, intron 1 of 11)	2895	NM_015255	23304	Hs.529925	NM_015255	ENSG00000024048	UBR2	C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
243	chr1	8610669	8613517	+	0	NA	intron (NM_001042681, intron 6 of 22)	intron (NM_001042681, intron 6 of 22)	-57120	NR_132752	106632271		NR_132752		SNORD128	ZL43	small nucleolar RNA, C/D box 128	snoRNA
981	chr10	120863705	120865153	+	0	NA	intron (NM_207009, intron 1 of 8)	intron (NM_207009, intron 1 of 8)	800	NR_027141	55855	Hs.567120	NM_018472		FAM45BP	FAM45B|HT011	family with sequence similarity 45, member A pseudogene	pseudo
448	chr11	61808890	61810865	+	0	NA	Intergenic	Intergenic	-74745	NM_002032	2495	Hs.524910	NM_002032	ENSG00000167996	FTH1	FHC|FTH|FTHL6|HFE5|PIG15|PLIF	ferritin heavy chain 1	protein-coding
865	chr2	112944168	112947867	+	0	NA	TTS (NM_001128165)	TTS (NM_001128165)	50055	NM_153214	129804	Hs.437696	NM_153214	ENSG00000144152	FBLN7	TM14	fibulin 7	protein-coding
77	chr10	15644688	15646877	+	0	NA	intron (NM_003638, intron 20 of 29)	intron (NM_003638, intron 20 of 29)	116552	NM_001291494	8516	Hs.171311	NM_003638	ENSG00000077943	ITGA8	-	integrin subunit alpha 8	protein-coding
305	chr12	8979107	8983958	+	0	NA	intron (NM_144670, intron 3 of 35)	L1MA3|LINE|L1	6464	NM_144670	144568	Hs.620532	NM_144670	ENSG00000166535	A2ML1	CPAMD9|p170	alpha-2-macroglobulin like 1	protein-coding
88	chr14	61187368	61192920	+	0	NA	exon (NM_017420, exon 1 of 3)	exon (NM_017420, exon 1 of 3)	708	NM_017420	51804	Hs.97849	NM_017420	ENSG00000100625	SIX4	AREC3	SIX homeobox 4	protein-coding
203	chr16	2768835	2772961	+	0	NA	promoter-TSS (NM_001318395)	promoter-TSS (NM_001318395)	-346	NM_031948	83886	Hs.332878	NM_031948	ENSG00000172382	PRSS27	CAPH2|MPN	serine protease 27	protein-coding
631	chr1	154355633	154361178	+	0	NA	Intergenic	Intergenic	-19264	NM_000565	3570	Hs.135087	NM_000565	ENSG00000160712	IL6R	CD126|IL-6R-1|IL-6RA|IL6Q|IL6RA|IL6RQ|gp80	interleukin 6 receptor	protein-coding
275	chr1	155824636	155832512	+	0	NA	promoter-TSS (NM_152280)	promoter-TSS (NM_152280)	617	NM_001282856	54856	Hs.656361	NM_032292	ENSG00000116580	GON4L	GON-4|GON4|YARP	gon-4 like	protein-coding
681	chr14	37348284	37350767	+	0	NA	intron (NM_030631, intron 1 of 9)	MLT1J|LTR|ERVL-MaLR	72071	NR_039725	100616280		NR_039725	ENSG00000266327	MIR4503	-	microRNA 4503	ncRNA
537	chr20	49002713	49004817	+	0	NA	Intergenic	Intergenic	-65886	NR_109950	101927586	Hs.637665	NR_109950	ENSG00000233077	LINC01271	-	long intergenic non-protein coding RNA 1271	ncRNA
531	chr21	44310327	44315243	+	0	NA	promoter-TSS (NM_021075)	promoter-TSS (NM_021075)	-593	NM_001001503	4731	Hs.473937	NM_021075	ENSG00000160194	NDUFV3	CI-10k|CI-9KD	NADH:ubiquinone oxidoreductase subunit V3	protein-coding
747	chr7	139552974	139557592	+	0	NA	intron (NM_001061, intron 1 of 12)	intron (NM_001061, intron 1 of 12)	26331	NM_001061	6916	Hs.520757	NM_001061	ENSG00000059377	TBXAS1	BDPLT14|CYP5|CYP5A1|GHOSAL|THAS|TS|TXAS|TXS	thromboxane A synthase 1	protein-coding
225	chr19	4057123	4069696	+	0	NA	intron (NM_015898, intron 1 of 2)	intron (NM_015898, intron 1 of 2)	2118	NM_001317990	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
899	chr3	6580942	6586359	+	0	NA	Intergenic	Intergenic	263486	NR_110123	101927347	Hs.333345	NR_110123	ENSG00000226258	GRM7-AS3	-	GRM7 antisense RNA 3	ncRNA
530	chr21	43815511	43837904	+	0	NA	intron (NM_001001895, intron 2 of 13)	intron (NM_001001895, intron 2 of 13)	2736	NM_001001895	53347	Hs.473912	NM_018961	ENSG00000160185	UBASH3A	CLIP4|STS-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing A	protein-coding
1000	chr16	19530357	19539050	+	0	NA	promoter-TSS (NM_001323577)	promoter-TSS (NM_001323577)	-476	NM_001323569	9738	Hs.279912	NM_014711	ENSG00000103540	CCP110	CP110|Cep110	centriolar coiled-coil protein 110	protein-coding
844	chr8	6304586	6306930	+	0	NA	TTS (NR_136159)	TTS (NR_136159)	41084	NM_001322045	79648	Hs.593807	NM_024596	ENSG00000147316	MCPH1	BRIT1|MCT	microcephalin 1	protein-coding
38	chr8	105536703	105560948	+	0	NA	intron (NM_013437, intron 1 of 6)	intron (NM_013437, intron 1 of 6)	52427	NM_001135703	29967	Hs.600630	NM_013437	ENSG00000147650	LRP12	ST7	LDL receptor related protein 12	protein-coding
27	chr16	87884667	87890720	+	0	NA	intron (NM_003486, intron 1 of 9)	intron (NM_003486, intron 1 of 9)	15412	NM_003486	8140	Hs.513797	NM_003486	ENSG00000103257	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16	solute carrier family 7 member 5	protein-coding
397	chr14	31340999	31347005	+	0	NA	5' UTR (NM_001135058, exon 1 of 11)	5' UTR (NM_001135058, exon 1 of 11)	261	NM_001135058	1690	Hs.21016	NM_004086	ENSG00000100473	COCH	COCH-5B2|COCH5B2|DFNA9	cochlin	protein-coding
887	chr11	61617786	61622023	+	0	NA	intron (NM_001281502, intron 5 of 11)	AluSx1|SINE|Alu	24399	NM_004265	9415	Hs.502745	NM_004265	ENSG00000134824	FADS2	D6D|DES6|FADSD6|LLCDL2|SLL0262|TU13	fatty acid desaturase 2	protein-coding
19	chr8	117701388	117710347	+	0	NA	intron (NM_003756, intron 2 of 7)	intron (NM_003756, intron 2 of 7)	41528	NR_136278	105375713		NR_136278		LOC105375713	-	uncharacterized LOC105375713	ncRNA
461	chr19	39535832	39537555	+	0	NA	Intergenic	L2a|LINE|L2	-13457	NM_178820	126433	Hs.187461	NM_178820	ENSG00000161243	FBXO27	FBG5|Fbx27	F-box protein 27	protein-coding
738	chr11	33741572	33748125	+	0	NA	promoter-TSS (NM_001127223)	promoter-TSS (NM_001127223)	-350	NM_001127227	966	Hs.278573	NM_000611	ENSG00000085063	CD59	16.3A5|1F5|EJ16|EJ30|EL32|G344|HRF-20|HRF20|MAC-IP|MACIF|MEM43|MIC11|MIN1|MIN2|MIN3|MIRL|MSK21|p18-20	CD59 molecule (CD59 blood group)	protein-coding
188	chr4	151949086	151955897	+	0	NA	Intergenic	AluJb|SINE|Alu	-15842	NM_006726	987	Hs.480938	NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA	LPS responsive beige-like anchor protein	protein-coding
334	chr9	88550323	88559695	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1048	NM_024635	60560	Hs.436098	NM_021929	ENSG00000135040	NAA35	EGAP|MAK10|MAK10P|bA379P1.1	N(alpha)-acetyltransferase 35, NatC auxiliary subunit	protein-coding
889	chr17	38536169	38538161	+	0	NA	Intergenic	Intergenic	-16220	NM_152219	125111	Hs.444663	NM_152219	ENSG00000183153	GJD3	CX31.9|Cx30.2|GJA11|GJC1	gap junction protein delta 3	protein-coding
183	chrX	15806600	15810321	+	0	NA	promoter-TSS (NM_005089)	promoter-TSS (NM_005089)	-114	NM_005089	8233	Hs.171909	NM_005089	ENSG00000169249	ZRSR2	U2AF1-RS2|U2AF1L2|U2AF1RS2|URP|ZC3H22	zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2	protein-coding
956	chr6	13580195	13583231	+	0	NA	intron (NM_031244, intron 2 of 9)	L1MC4a|LINE|L1	6854	NM_012241	23408	Hs.567431	NM_012241	ENSG00000124523	SIRT5	SIR2L5	sirtuin 5	protein-coding
434	chr3	193718281	193725158	+	0	NA	promoter-TSS (NR_033944)	promoter-TSS (NR_033944)	-271	NR_033944	647323	Hs.652830	NR_033944	ENSG00000214146	LINC02026	-	long intergenic non-protein coding RNA 2026	ncRNA
68	chr1	38409185	38415605	+	0	NA	intron (NM_005540, intron 1 of 23)	intron (NM_005540, intron 1 of 23)	334	NM_005540	3633	Hs.449942	NM_005540	ENSG00000204084	INPP5B	5PTase	inositol polyphosphate-5-phosphatase B	protein-coding
572	chr11	18545552	18552160	+	0	NA	promoter-TSS (NM_006292)	promoter-TSS (NM_006292)	-353	NM_006292	7251	Hs.523512	NM_006292	ENSG00000074319	TSG101	TSG10|VPS23	tumor susceptibility 101	protein-coding
748	chr8	104030678	104035877	+	0	NA	promoter-TSS (NM_001695)	promoter-TSS (NM_001695)	29	NM_001695	528	Hs.86905	NM_001695	ENSG00000155097	ATP6V1C1	ATP6C|ATP6D|VATC|Vma5	ATPase H+ transporting V1 subunit C1	protein-coding
319	chr22	30175733	30179161	+	0	NA	Intergenic	L3|LINE|CR1	14089	NM_013387	29796	Hs.284292	NM_013387	ENSG00000184076	UQCR10	HSPC051|HSPC119|HSPC151|QCR9|UCCR7.2|UCRC	ubiquinol-cytochrome c reductase, complex III subunit X	protein-coding
581	chr22	23227190	23230411	+	0	NA	TTS (NR_049835)	TTS (NR_049835)	353	NR_049835	100847006		NR_049835	ENSG00000264824	MIR5571	-	microRNA 5571	ncRNA
446	chr7	130808659	130810342	+	0	NA	intron (NM_001145354, intron 1 of 18)	intron (NM_001145354, intron 1 of 18)	14645	NM_001145354	4289	Hs.44693	NM_013255	ENSG00000128585	MKLN1	TWA2	muskelin 1	protein-coding
392	chr12	123994061	124000059	+	0	NA	intron (NM_178314, intron 2 of 6)	(TG)n|Simple_repeat|Simple_repeat	7713	NM_001319244	353116	Hs.530315	NM_178314	ENSG00000188026	RILPL1	GOSPEL|RLP1	Rab interacting lysosomal protein like 1	protein-coding
156	chr16	74697040	74703778	+	0	NA	intron (NM_018124, intron 1 of 12)	CpG	370	NM_018124	55159	Hs.567525	NM_018124	ENSG00000168411	RFWD3	FANCW|RNF201	ring finger and WD repeat domain 3	protein-coding
728	chr19	35409938	35411864	+	0	NA	Intergenic	LTR16A|LTR|ERVL	6829	NR_110749	102723513	Hs.149702	NR_110749		ZNF30-AS1	-	ZNF30 antisense RNA 1	ncRNA
245	chr14	51409316	51412321	+	0	NA	intron (NM_002863, intron 1 of 19)	CpG	430	NM_002863	5836	Hs.282417	NM_002863	ENSG00000100504	PYGL	GSD6	glycogen phosphorylase L	protein-coding
566	chr1	151582677	151586831	+	0	NA	promoter-TSS (NM_001330723)	promoter-TSS (NM_001330723)	92	NM_030918	81609	Hs.192326	NM_030918	ENSG00000143376	SNX27	MRT1|MY014	sorting nexin family member 27	protein-coding
702	chr1	51786363	51788368	+	0	NA	intron (NM_001297662, intron 2 of 12)	intron (NM_001297662, intron 2 of 12)	575	NM_001297665	22996	Hs.112949	NM_001080494	ENSG00000085831	TTC39A	C1orf34|DEME-6	tetratricopeptide repeat domain 39A	protein-coding
462	chr17	74726322	74738440	+	0	NA	promoter-TSS (NM_001242534)	promoter-TSS (NM_001242534)	249	NR_030366	693221		NR_030366	ENSG00000283805	MIR636	MIRN636|hsa-mir-636	microRNA 636	ncRNA
554	chr19	3498184	3502883	+	0	NA	promoter-TSS (NM_031304)	promoter-TSS (NM_031304)	88	NM_031304	83475	Hs.515064	NM_031304	ENSG00000129932	DOHH	HLRC1|hDOHH	deoxyhypusine hydroxylase	protein-coding
143	chr19	569241	577864	+	0	NA	intron (NM_001322243, intron 1 of 7)	intron (NM_001322243, intron 1 of 7)	1098	NM_198589	682	Hs.501293	NM_001728	ENSG00000172270	BSG	5F7|CD147|EMMPRIN|EMPRIN|OK|TCSF	basigin (Ok blood group)	protein-coding
718	chr11	66277018	66280220	+	0	NA	intron (NM_024649, intron 2 of 16)	intron (NM_024649, intron 2 of 16)	500	NM_024649	582	Hs.502915	NM_024649	ENSG00000174483	BBS1	BBS2L2	Bardet-Biedl syndrome 1	protein-coding
590	chr5	61565986	61575816	+	0	NA	Intergenic	AluJo|SINE|Alu	-31088	NM_001098511	3796	Hs.558351	NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
648	chr11	46635096	46642275	+	0	NA	promoter-TSS (NM_001346338)	promoter-TSS (NM_001346338)	92	NM_173811	283254	Hs.714463	NM_173811	ENSG00000180423	HARBI1	C11orf77	harbinger transposase derived 1	protein-coding
627	chr22	19483801	19487501	+	0	NA	intron (NM_001178011, intron 7 of 17)	AluSq2|SINE|Alu	18302	NM_001178011	8318	Hs.474217	NM_003504	ENSG00000093009	CDC45	CDC45L|CDC45L2|MGORS7|PORC-PI-1	cell division cycle 45	protein-coding
355	chr17	40304010	40309383	+	0	NA	intron (NM_201434, intron 1 of 6)	intron (NM_201434, intron 1 of 6)	366	NM_001252039	5878	Hs.650382	NM_004583	ENSG00000108774	RAB5C	L1880|RAB5CL|RAB5L|RABL	RAB5C, member RAS oncogene family	protein-coding
848	chr17	76178582	76185975	+	0	NA	intron (NM_003258, intron 2 of 6)	AluJr|SINE|Alu	1007	NM_001346663	7083	Hs.515122	NM_003258	ENSG00000167900	TK1	TK2	thymidine kinase 1	protein-coding
669	chr10	75259541	75262308	+	0	NA	intron (NR_146998, intron 19 of 20)	intron (NR_146998, intron 19 of 20)	-5142	NM_001142353	5532	Hs.500067	NM_021132	ENSG00000107758	PPP3CB	CALNA2|CALNB|CNA2|PP2Bbeta	protein phosphatase 3 catalytic subunit beta	protein-coding
487	chr2	113468954	113472589	+	0	NA	Intergenic	L2b|LINE|L2	-8292	NM_001350494	284958	Hs.589714	NM_001350494	ENSG00000144130	NT5DC4	-	5'-nucleotidase domain containing 4	protein-coding
90	chr1	1289968	1296101	+	0	NA	intron (NM_001282583, intron 1 of 9)	AluSq2|SINE|Alu	893	NM_001282585	54587	Hs.515687	NM_032348	ENSG00000162576	MXRA8	ASP3	matrix remodeling associated 8	protein-coding
145	chr2	242623975	242629879	+	0	NA	promoter-TSS (NM_001165031)	promoter-TSS (NM_001165031)	500	NM_001330161	84289	Hs.529172	NM_032329	ENSG00000168395	ING5	p28ING5	inhibitor of growth family member 5	protein-coding
314	chr11	66371110	66373039	+	0	NA	intron (NM_005125, intron 5 of 7)	intron (NM_005125, intron 5 of 7)	11384	NM_005125	9973	Hs.502917	NM_005125	ENSG00000173992	CCS	-	copper chaperone for superoxide dismutase	protein-coding
791	chr12	121633730	121637728	+	0	NA	Intergenic	Intergenic	-11935	NR_046373	5025	Hs.321709	NM_002560	ENSG00000135124	P2RX4	P2X4|P2X4R	purinergic receptor P2X 4	protein-coding
733	chr3	185275574	185277784	+	0	NA	Intergenic	Intergenic	-6310	NM_139248	200879	Hs.68864	NM_139248	ENSG00000163898	LIPH	AH|ARWH2|HYPT7|LAH2|LPDLR|PLA1B|mPA-PLA1	lipase H	protein-coding
367	chr1	227124174	227134231	+	0	NA	intron (NM_020247, intron 1 of 14)	AluSx1|SINE|Alu	1264	NM_020247	56997	Hs.118241	NM_020247	ENSG00000163050	COQ8A	ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9	coenzyme Q8A	protein-coding
634	chr6	17699055	17709501	+	0	NA	intron (NM_005124, intron 1 of 21)	AluY|SINE|Alu	-2083	NR_134616	105374952	Hs.718703	NR_134616	ENSG00000272269	LOC105374952	-	uncharacterized LOC105374952	ncRNA
254	chr15	67093016	67099083	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	101375	NM_005585	4091	Hs.153863	NM_005585	ENSG00000137834	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
515	chr12	110935389	110942049	+	0	NA	intron (NR_104101, intron 1 of 4)	AluSx1|SINE|Alu	1226	NR_104102	51699	Hs.600114	NM_016226	ENSG00000111237	VPS29	DC15|DC7|PEP11	VPS29, retromer complex component	protein-coding
782	chr6	157875596	157878756	+	0	NA	intron (NM_153746, intron 1 of 8)	intron (NM_153746, intron 1 of 8)	-72988	NR_037463	100500899		NR_037463	ENSG00000266617	MIR3692	-	microRNA 3692	ncRNA
59	chr1	204667755	204689330	+	0	NA	Intergenic	Intergenic	-23945	NM_201630	10446	Hs.26312	NM_006338	ENSG00000170382	LRRN2	FIGLER7|GAC1|LRANK1|LRRN5	leucine rich repeat neuronal 2	protein-coding
758	chr17	78803872	78809243	+	0	NA	intron (NM_020761, intron 9 of 33)	intron (NM_020761, intron 9 of 33)	-27125	NR_110852	101928855	Hs.670692	NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
585	chr16	2812928	2834237	+	0	NA	intron (NM_007108, intron 3 of 3)	intron (NM_007108, intron 3 of 3)	3715	NM_207013	6923	Hs.172772	NM_007108	ENSG00000103363	ELOB	SIII|TCEB2	elongin B	protein-coding
78	chr21	35439251	35465483	+	0	NA	intron (NM_032476, intron 1 of 2)	intron (NM_032476, intron 1 of 2)	6544	NM_032476	64968	Hs.302742	NM_032476	ENSG00000243927	MRPS6	C21orf101|MRP-S6|RPMS6|S6mt	mitochondrial ribosomal protein S6	protein-coding
106	chr11	16393351	16406760	+	0	NA	intron (NM_033326, intron 1 of 15)	intron (NM_033326, intron 1 of 15)	24358	NM_001145819	55553	Hs.368226	NM_017508	ENSG00000110693	SOX6	HSSOX6|SOXD	SRY-box 6	protein-coding
959	chr3	151259846	151262842	+	0	NA	Intergenic	LTR18B|LTR|ERVL	22439	NR_049818	100847036		NR_049818	ENSG00000264330	MIR5186	-	microRNA 5186	ncRNA
922	chr1	160506948	160522671	+	0	NA	3' UTR (NM_003874, exon 7 of 7)	3' UTR (NM_003874, exon 7 of 7)	-21757	NM_001184716	114836	Hs.492348	NM_052931	ENSG00000162739	SLAMF6	CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding
766	chr1	40346249	40351267	+	0	NA	intron (NM_001312691, intron 1 of 9)	MIRb|SINE|MIR	425	NR_132401	54802	Hs.356554	NM_017646	ENSG00000043514	TRIT1	COXPD35|GRO1|IPPT|IPT|IPTase|MOD5|hGRO1	tRNA isopentenyltransferase 1	protein-coding
701	chr18	104020	114024	+	0	NA	promoter-TSS (NR_033770)	promoter-TSS (NR_033770)	-43	NR_033770	727758	Hs.585843	NR_033770	ENSG00000263006	ROCK1P1	-	Rho associated coiled-coil containing protein kinase 1 pseudogene 1	pseudo
341	chr16	29684661	29686775	+	0	NA	Intergenic	L2c|LINE|L2	-4611	NM_014298	23475	Hs.513484	NM_014298	ENSG00000103485	QPRT	HEL-S-90n|QPRTase	quinolinate phosphoribosyltransferase	protein-coding
420	chr18	19176274	19183303	+	0	NA	intron (NM_052911, intron 1 of 11)	intron (NM_052911, intron 1 of 11)	905	NM_052911	114799	Hs.464733	NM_052911	ENSG00000141446	ESCO1	A930014I12Rik|CTF|ECO1|EFO1|ESO1	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding
121	chr1	110184950	110186993	+	0	NA	Intergenic	CpG	-12727	NM_147148	2948	Hs.348387	NM_000850	ENSG00000168765	GSTM4	GSTM4-4|GTM4	glutathione S-transferase mu 4	protein-coding
476	chr17	73235463	73237905	+	0	NA	intron (NM_138619, intron 11 of 16)	intron (NM_138619, intron 11 of 16)	21058	NM_001291642	23163	Hs.87726	NM_014001	ENSG00000125447	GGA3	-	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
938	chr1	154577573	154583062	+	0	NA	intron (NM_001025107, intron 1 of 14)	intron (NM_001025107, intron 1 of 14)	407	NM_001111	103	Hs.12341	NM_001111	ENSG00000160710	ADAR	ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136	adenosine deaminase, RNA specific	protein-coding
422	chr9	130270417	130273241	+	0	NA	intron (NM_001035534, intron 9 of 13)	intron (NM_001035534, intron 9 of 13)	57295	NM_001005374	90678	Hs.495188	NM_138361	ENSG00000148356	LRSAM1	CMT2P|RIFLE|TAL	leucine rich repeat and sterile alpha motif containing 1	protein-coding
773	chr17	76154614	76175926	+	0	NA	intron (NM_001320523, intron 1 of 2)	CpG	644	NM_001320523	9144	Hs.464210	NM_004710	ENSG00000108639	SYNGR2	-	synaptogyrin 2	protein-coding
886	chr2	55253044	55255484	+	0	NA	exon (NM_020532, exon 3 of 9)	exon (NM_020532, exon 3 of 9)	-16794	NM_007008	57142	Hs.637850	NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
647	chr5	172480725	172487189	+	0	NA	intron (NM_001168393, intron 1 of 3)	G-rich|Low_complexity|Low_complexity	602	NM_001168394	153222	Hs.484195	NM_153607	ENSG00000164463	CREBRF	C5orf41|LRF	CREB3 regulatory factor	protein-coding
781	chr5	137511554	137519663	+	0	NA	intron (NM_005733, intron 2 of 18)	intron (NM_005733, intron 2 of 18)	1191	NM_005733	10112	Hs.718626	NM_005733	ENSG00000112984	KIF20A	MKLP2|RAB6KIFL	kinesin family member 20A	protein-coding
136	chr6	2931620	2933798	+	0	NA	Intergenic	Intergenic	-29163	NM_004155	5272	Hs.104879	NM_004155	ENSG00000170542	SERPINB9	CAP-3|CAP3|PI-9|PI9	serpin family B member 9	protein-coding
722	chr8	117662404	117665124	+	0	NA	promoter-TSS (NR_136278)	promoter-TSS (NR_136278)	-575	NR_136278	105375713		NR_136278		LOC105375713	-	uncharacterized LOC105375713	ncRNA
443	chr15	73922653	73927111	+	0	NA	intron (NM_012428, intron 1 of 8)	intron (NM_012428, intron 1 of 8)	871	NM_001161364	27020	Hs.744867	NM_012428	ENSG00000156642	NPTN	GP55|GP65|SDFR1|SDR1|np55|np65	neuroplastin	protein-coding
385	chr19	18227496	18229915	+	0	NA	intron (NM_015016, intron 2 of 26)	CpG	-19079	NM_001290024	3594	Hs.567294	NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
388	chr1	32685097	32691905	+	0	NA	promoter-TSS (NR_133635)	promoter-TSS (NR_133635)	-529	NM_019118	56063	Hs.272299	NM_019118	ENSG00000160055	TMEM234	AASL548|C1orf91|PRO1105|RP4-622L5|dJ622L5.7	transmembrane protein 234	protein-coding
480	chr7	23568063	23573615	+	0	NA	5' UTR (NM_001282759, exon 2 of 10)	5' UTR (NM_001282759, exon 2 of 10)	821	NM_001282759	29896	Hs.445652	NM_013293	ENSG00000164548	TRA2A	AWMS1|HSU53209	transformer 2 alpha homolog	protein-coding
643	chr4	185666029	185670820	+	0	NA	Intergenic	Intergenic	-13138	NM_024629	79682	Hs.575032	NM_024629	ENSG00000151725	CENPU	CENP50|CENPU50|KLIP1|MLF1IP|PBIP1	centromere protein U	protein-coding
36	chr17	40162278	40166054	+	0	NA	intron (NM_003315, intron 1 of 13)	intron (NM_003315, intron 1 of 13)	5017	NM_001144766	7266	Hs.500156	NM_003315	ENSG00000168259	DNAJC7	DJ11|DJC7|TPR2|TTC2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding
118	chr12	8204702	8206388	+	0	NA	3' UTR (NM_018416, exon 11 of 11)	3' UTR (NM_018416, exon 11 of 11)	13522	NM_004054	719	Hs.504656	NM_004054	ENSG00000171860	C3AR1	AZ3B|C3AR|HNFAG09	complement C3a receptor 1	protein-coding
169	chr22	45088291	45090826	+	0	NA	intron (NM_001198721, intron 2 of 9)	AluY|SINE|Alu	-8520	NM_181334	553158	Hs.102336	NM_181334	ENSG00000248405	PRR5-ARHGAP8	-	PRR5-ARHGAP8 readthrough	protein-coding
332	chr19	49248501	49253408	+	0	NA	promoter-TSS (NM_001321864)	promoter-TSS (NM_001321864)	-788	NM_182575	284359	Hs.400688	NM_182575	ENSG00000182264	IZUMO1	IZUMO|OBF	izumo sperm-egg fusion 1	protein-coding
69	chr13	30877076	30886234	+	0	NA	promoter-TSS (NM_032116)	promoter-TSS (NM_032116)	-31	NM_032116	84056	Hs.243596	NM_032116	ENSG00000102781	KATNAL1	-	katanin catalytic subunit A1 like 1	protein-coding
86	chr10	72316661	72320764	+	0	NA	intron (NM_014431, intron 18 of 19)	MER83|LTR|ERV1	43832	NM_001083116	5551	Hs.2200	NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
325	chr22	49904359	49906566	+	0	NA	intron (NR_110523, intron 1 of 4)	MLT1A0|LTR|ERVL-MaLR	31652	NR_037440	100500882		NR_037440	ENSG00000264139	MIR3667	-	microRNA 3667	ncRNA
512	chr15	63582153	63586557	+	0	NA	intron (NM_031301, intron 4 of 5)	intron (NM_031301, intron 4 of 5)	14606	NM_031301	83464	Hs.511703	NM_031301	ENSG00000138613	APH1B	APH-1B|PRO1328|PSFL|TAAV688	aph-1 homolog B, gamma-secretase subunit	protein-coding
793	chr16	30903196	30910082	+	0	NA	TTS (NR_110940)	TTS (NR_110940)	-1016	NM_001286526	9274	Hs.658547	NM_004765	ENSG00000099385	BCL7C	-	BCL tumor suppressor 7C	protein-coding
881	chr19	55835665	55837799	+	0	NA	promoter-TSS (NM_001085488)	promoter-TSS (NM_001085488)	-24	NR_104066	284417	Hs.382625	NM_001085488	ENSG00000180061	TMEM150B	DRAM3|TMEM224|TTN2	transmembrane protein 150B	protein-coding
817	chr22	36862790	36867577	+	0	NA	intron (NM_012473, intron 3 of 3)	MIRb|SINE|MIR	12504	NM_012473	25828	Hs.211929	NM_012473	ENSG00000100348	TXN2	COXPD29|MT-TRX|MTRX|TRX2|TXN	thioredoxin 2	protein-coding
974	chr10	27387983	27390562	+	0	NA	5' UTR (NM_014915, exon 1 of 34)	5' UTR (NM_014915, exon 1 of 34)	155	NM_014915	22852	Hs.361041	NM_014915	ENSG00000107890	ANKRD26	THC2|bA145E8.1	ankyrin repeat domain 26	protein-coding
215	chr8	126314296	126333254	+	0	NA	intron (NM_173685, intron 5 of 7)	intron (NM_173685, intron 5 of 7)	-118788	NM_025195	10221	Hs.444947	NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
217	chr16	68991851	68994083	+	0	NA	intron (NM_024562, intron 14 of 17)	intron (NM_024562, intron 14 of 17)	115458	NM_024562	79613	Hs.13526	NM_024562	ENSG00000103047	TANGO6	TMCO7	transport and golgi organization 6 homolog	protein-coding
108	chr5	173226221	173229010	+	0	NA	Intergenic	Intergenic	-9670	NR_108028	101928154	Hs.366725	NR_108028		LINC01485	-	long intergenic non-protein coding RNA 1485	ncRNA
507	chr21	34586873	34589801	+	0	NA	Intergenic	Intergenic	-13863	NM_001289125	3455	Hs.708195	NM_000874	ENSG00000159110	IFNAR2	IFN-R|IFN-alpha-REC|IFNABR|IFNARB|IMD45	interferon alpha and beta receptor subunit 2	protein-coding
201	chr3	52013247	52031615	+	0	NA	intron (NM_000666, intron 12 of 14)	L2b|LINE|L2	5131	NM_001198897	95	Hs.334707	NM_000666	ENSG00000243989	ACY1	ACY-1|ACY1D|HEL-S-5	aminoacylase 1	protein-coding
496	chr6	30879716	30885815	+	0	NA	TTS (NM_001517).6	TTS (NM_001517).6	657	NM_001167734	57176	Hs.597526	NM_020442	ENSG00000137411	VARS2	COXPD20|VALRS|VARS2L|VARSL	valyl-tRNA synthetase 2, mitochondrial	protein-coding
721	chr16	23518583	23523944	+	0	NA	intron (NM_015044, intron 1 of 16)	MIRb|SINE|MIR	552	NM_015044	23062	Hs.460336	NM_015044	ENSG00000103365	GGA2	VEAR	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding
989	chr15	65474254	65480116	+	0	NA	intron (NM_006660, intron 1 of 13)	CpG	573	NM_006660	10845	Hs.113823	NM_006660	ENSG00000166855	CLPX	-	caseinolytic mitochondrial matrix peptidase chaperone subunit	protein-coding
517	chr3	194290720	194295417	+	0	NA	Intergenic	Intergenic	-11929	NR_047575	100507297	Hs.586059	NR_047573		TMEM44-AS1	-	TMEM44 antisense RNA 1	ncRNA
207	chr19	4380452	4383816	+	0	NA	intron (NM_003025, intron 1 of 9)	MLT1D|LTR|ERVL-MaLR	18281	NM_001199944	6455	Hs.97616	NM_003025	ENSG00000141985	SH3GL1	CNSA1|EEN|SH3D2B|SH3P8	SH3 domain containing GRB2 like 1, endophilin A2	protein-coding
258	chr10	69642162	69647979	+	0	NA	5' UTR (NM_001142498, exon 1 of 8)	5' UTR (NM_001142498, exon 1 of 8)	131	NM_001142498	23411	Hs.369779	NM_012238	ENSG00000096717	SIRT1	SIR2|SIR2L1|SIR2alpha	sirtuin 1	protein-coding
717	chr2	10563567	10600230	+	0	NA	intron (NM_001287188, intron 10 of 11)	intron (NM_001287188, intron 10 of 11)	5077	NR_028374	100302743	Hs.730525	NR_028374	ENSG00000206633	SNORA80B	ACA67B	small nucleolar RNA, H/ACA box 80B	snoRNA
129	chr17	38517840	38521222	+	0	NA	exon (NM_152219, exon 1 of 1)	exon (NM_152219, exon 1 of 1)	1414	NM_152219	125111	Hs.444663	NM_152219	ENSG00000183153	GJD3	CX31.9|Cx30.2|GJA11|GJC1	gap junction protein delta 3	protein-coding
406	chr19	48899044	48905750	+	0	NA	intron (NM_000836, intron 2 of 12)	intron (NM_000836, intron 2 of 12)	4265	NM_000836	2906	Hs.445015	NM_000836	ENSG00000105464	GRIN2D	EB11|EIEE46|GluN2D|NMDAR2D|NR2D	glutamate ionotropic receptor NMDA type subunit 2D	protein-coding
241	chr16	8228903	8234613	+	0	NA	Intergenic	Intergenic	356070	NM_001290098	283953	Hs.150849	NM_001146336	ENSG00000232258	TMEM114	-	transmembrane protein 114	protein-coding
535	chr17	18159643	18166376	+	0	NA	promoter-TSS (NM_001256265)	promoter-TSS (NM_001256265)	-779	NM_001256265	2314	Hs.513984	NM_002018	ENSG00000177731	FLII	FLI|FLIL|Fli1	FLII, actin remodeling protein	protein-coding
92	chr11	64569937	64571928	+	0	NA	promoter-TSS (NM_004579)	promoter-TSS (NM_004579)	-206	NM_001307990	5871	Hs.534341	NM_004579	ENSG00000168067	MAP4K2	BL44|GCK|RAB8IP	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding
301	chr1	27653943	27655427	+	0	NA	intron (NM_032125, intron 1 of 5)	L2a|LINE|L2	4320	NR_033926	644961	Hs.660887	NR_033926		ACTG1P20	-	actin gamma 1 pseudogene 20	pseudo
709	chr15	90357800	90359995	+	0	NA	promoter-TSS (NM_001150)	promoter-TSS (NM_001150)	-825	NM_001150	290	Hs.1239	NM_001150	ENSG00000166825	ANPEP	APN|CD13|GP150|LAP1|P150|PEPN	alanyl aminopeptidase, membrane	protein-coding
529	chr16	67873728	67883624	+	0	NA	TTS (NM_020457)	TTS (NM_020457)	-1959	NM_005796	10204	Hs.356630	NM_005796	ENSG00000102898	NUTF2	NTF-2|NTF2|PP15	nuclear transport factor 2	protein-coding
873	chr13	20285729	20289929	+	0	NA	intron (NM_001042414, intron 7 of 9)	intron (NM_001042414, intron 7 of 9)	69347	NM_001354909	55269	Hs.213198	NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
224	chr12	94104359	94109693	+	0	NA	intron (NR_110092, intron 2 of 2)	intron (NR_110092, intron 2 of 2)	24573	NR_110093	101928731	Hs.659971	NR_110092	ENSG00000258274	LOC101928731	-	uncharacterized LOC101928731	ncRNA
774	chr16	24995896	24999760	+	0	NA	intron (NM_001006634, intron 1 of 19)	MER58B|DNA|hAT-Charlie	28871	NM_001006634	55114	Hs.373793	NM_018054	ENSG00000140750	ARHGAP17	MST066|MST110|MSTP038|MSTP066|MSTP110|NADRIN|PP367|PP4534|RICH-1|RICH1|WBP15	Rho GTPase activating protein 17	protein-coding
900	chr11	65485808	65490482	+	0	NA	exon (NM_032193, exon 1 of 4)	exon (NM_032193, exon 1 of 4)	264	NM_032193	84153	Hs.718438	NM_032193	ENSG00000172922	RNASEH2C	AGS3|AYP1	ribonuclease H2 subunit C	protein-coding
915	chr13	95944564	95945783	+	0	NA	intron (NM_001301829, intron 1 of 29)	intron (NM_001301829, intron 1 of 29)	8527	NM_001301829	10257	Hs.508423	NM_005845	ENSG00000125257	ABCC4	MOAT-B|MOATB|MRP4	ATP binding cassette subfamily C member 4	protein-coding
545	chr17	31144637	31147323	+	0	NA	intron (NM_001303279, intron 1 of 21)	intron (NM_001303279, intron 1 of 21)	58211	NM_001303280	4642	Hs.602063	NM_015194	ENSG00000176658	MYO1D	PPP1R108|myr4	myosin ID	protein-coding
743	chr11	71787983	71794502	+	0	NA	promoter-TSS (NM_001145309)	promoter-TSS (NM_001145309)	-135	NM_001145309	220074	Hs.317243	NM_145309	ENSG00000184154	LRTOMT	CFAP111|DFNB63|LRRC51	leucine rich transmembrane and O-methyltransferase domain containing	protein-coding
184	chr22	37667889	37671847	+	0	NA	Intergenic	Intergenic	-8556	NM_013385	27128	Hs.170944	NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
445	chr7	133761585	133763770	+	0	NA	Intergenic	LTR76|LTR|ERV1	-49428	NM_144648	136332	Hs.149774	NM_144648	ENSG00000155530	LRGUK	CFAP246	leucine rich repeats and guanylate kinase domain containing	protein-coding
259	chr10	75550558	75554975	+	0	NA	intron (NM_001242488, intron 10 of 25)	L2c|LINE|L2	7384	NM_015037	23053	Hs.65135	NM_015037	ENSG00000214655	ZSWIM8	KIAA0913	zinc finger SWIM-type containing 8	protein-coding
440	chr19	14141494	14144148	+	0	NA	TTS (NM_001311197)	TTS (NM_001311197)	269	NM_004843	9466	Hs.132781	NM_004843	ENSG00000104998	IL27RA	CRL1|IL-27RA|IL27R|TCCR|WSX1|zcytor1	interleukin 27 receptor subunit alpha	protein-coding
360	chr8	133687085	133688999	+	0	NA	promoter-TSS (NM_001321965)	promoter-TSS (NM_001321965)	-179	NR_135907	23639	Hs.591865	NM_012472	ENSG00000129295	LRRC6	CILD19|LRTP|TSLRP	leucine rich repeat containing 6	protein-coding
255	chr4	8302651	8309983	+	0	NA	intron (NM_053044, intron 8 of 8)	MIRc|SINE|MIR	-15586	NR_149126	105374374	Hs.145224	NR_149125	ENSG00000249145	LINC02517	-	long intergenic non-protein coding RNA 2517	ncRNA
783	chr4	186036106	186042841	+	0	NA	Intergenic	Intergenic	-24944	NM_001151	291	Hs.246506	NM_001151	ENSG00000151729	SLC25A4	AAC1|ANT|ANT 1|ANT1|MTDPS12|MTDPS12A|PEO2|PEO3|PEOA2|T1	solute carrier family 25 member 4	protein-coding
561	chr5	204909	209021	+	0	NA	intron (NM_145265, intron 2 of 2)	intron (NM_145265, intron 2 of 2)	11332	NM_145265	133957	Hs.294145	NM_145265	ENSG00000164366	CCDC127	-	coiled-coil domain containing 127	protein-coding
117	chr6	68685085	68687121	+	0	NA	Intergenic	Intergenic	-79140	NR_125869	102723883	Hs.566528	NR_125869	ENSG00000223504	LOC102723883	-	uncharacterized LOC102723883	ncRNA
492	chr1	226104649	226121228	+	0	NA	promoter-TSS (NM_013328)	promoter-TSS (NM_013328)	-898	NM_013328	29920	Hs.654718	NM_013328	ENSG00000143811	PYCR2	HLD10|P5CR2	pyrroline-5-carboxylate reductase 2	protein-coding
180	chr19	41664482	41666423	+	0	NA	Intergenic	AluSp|SINE|Alu	-33660	NM_030622	29785	Hs.98370	NM_030622	ENSG00000167600	CYP2S1	CYPIIS1	cytochrome P450 family 2 subfamily S member 1	protein-coding
935	chr6	24401225	24406283	+	0	NA	intron (NR_104423, intron 1 of 9)	intron (NR_104423, intron 1 of 9)	618	NM_020662	57380	Hs.658612	NM_020662	ENSG00000124532	MRS2	HPT|MRS2L	MRS2, magnesium transporter	protein-coding
966	chr20	32294924	32300318	+	0	NA	intron (NM_183397, intron 2 of 2)	C-rich|Low_complexity|Low_complexity	10515	NM_007238	11264	Hs.654857	NM_007238	ENSG00000101417	PXMP4	PMP24	peroxisomal membrane protein 4	protein-coding
621	chr5	53572513	53577032	+	0	NA	intron (NM_019087, intron 1 of 4)	intron (NM_019087, intron 1 of 4)	31631	NM_019087	54622	Hs.659125	NM_019087	ENSG00000185305	ARL15	ARFRP2	ADP ribosylation factor like GTPase 15	protein-coding
284	chr15	64118200	64120601	+	0	NA	intron (NM_003922, intron 1 of 77)	AluJb|SINE|Alu	6747	NM_003922	8925	Hs.210385	NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
671	chr16	1468318	1473027	+	0	NA	intron (NM_001272051, intron 1 of 1)	CpG	129	NM_001272051	283951	Hs.58373	NM_001010878	ENSG00000174109	C16orf91	CCSMST1|URLC5|gs103	chromosome 16 open reading frame 91	protein-coding
159	chr14	91523895	91529648	+	0	NA	promoter-TSS (NM_001322238)	promoter-TSS (NM_001322238)	144	NM_001358311	80017	Hs.309849	NM_024952	ENSG00000133943	DGLUCY	C14orf159	D-glutamate cyclase	protein-coding
911	chr9	90059097	90062095	+	0	NA	Intergenic	Intergenic	-51547	NM_001288731	1612	Hs.380277	NM_004938	ENSG00000196730	DAPK1	DAPK|ROCO3	death associated protein kinase 1	protein-coding
37	chr8	129437854	129444338	+	0	NA	intron (NR_121672, intron 2 of 7)	intron (NR_121672, intron 2 of 7)	135829	NR_121673	101927774	Hs.628730	NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
750	chr11	66493272	66498719	+	0	NA	Intergenic	CpG	-7125	NM_006946	6712	Hs.26915	NM_006946	ENSG00000173898	SPTBN2	GTRAP41|SCA5|SCAR14	spectrin beta, non-erythrocytic 2	protein-coding
384	chr17	74522550	74528538	+	0	NA	intron (NM_134268, intron 3 of 3)	intron (NM_134268, intron 3 of 3)	1876	NR_033357	768206	Hs.634380	NM_001077620	ENSG00000214140	PRCD	RP36	photoreceptor disc component	protein-coding
393	chr14	77227925	77258301	+	0	NA	intron (NM_014909, intron 5 of 6)	intron (NM_014909, intron 5 of 6)	9954	NR_104184	100506603	Hs.673984	NR_104183	ENSG00000258301	VASH1-AS1	-	VASH1 antisense RNA 1	ncRNA
110	chr8	28809854	28812060	+	0	NA	intron (NM_001324393, intron 2 of 11)	intron (NM_001324393, intron 2 of 11)	62124	NM_001324388	79618	Hs.563560	NM_024567	ENSG00000147421	HMBOX1	HNF1LA|HOT1|PBHNF	homeobox containing 1	protein-coding
665	chr22	19910448	19912757	+	0	NA	intron (NM_001282512, intron 2 of 11)	AluJr|SINE|Alu	8474	NM_001352301	10587	Hs.443430	NM_006440	ENSG00000184470	TXNRD2	GCCD5|SELZ|TR|TR-BETA|TR3|TRXR2	thioredoxin reductase 2	protein-coding
185	chr4	83277990	83298556	+	0	NA	intron (NM_001003810, intron 1 of 6)	AluJr|SINE|Alu	6876	NM_031369	3184	Hs.480073	NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
626	chr5	55605177	55608644	+	0	NA	Intergenic	Intergenic	-77724	NM_024669	79722	Hs.436214	NM_024669	ENSG00000164512	ANKRD55	-	ankyrin repeat domain 55	protein-coding
179	chr11	118431752	118454383	+	0	NA	promoter-TSS (NM_001142281)	promoter-TSS (NM_001142281)	-35	NM_001142281	372	Hs.33642	NM_001655	ENSG00000095139	ARCN1	COPD|SRMMD	archain 1	protein-coding
479	chr3	177050606	177052363	+	0	NA	Intergenic	Intergenic	39254	NR_047465	100820709	Hs.518409	NR_047465	ENSG00000203645	LINC00501	-	long intergenic non-protein coding RNA 501	ncRNA
330	chr17	42286825	42288721	+	0	NA	non-coding (NR_045058, exon 14 of 21)	non-coding (NR_045058, exon 14 of 21)	-2566	NR_106840	102465469		NR_106840	ENSG00000275107	MIR6782	hsa-mir-6782	microRNA 6782	ncRNA
411	chr19	10674261	10681987	+	0	NA	intron (NM_079421, intron 2 of 2)	intron (NM_079421, intron 2 of 2)	-1422	NM_023008	65095	Hs.709967	NM_023008	ENSG00000129347	KRI1	-	KRI1 homolog	protein-coding
767	chr3	135966719	135972152	+	0	NA	intron (NM_000532, intron 1 of 14)	CpG	268	NM_000532	5096	Hs.63788	NM_000532	ENSG00000114054	PCCB	-	propionyl-CoA carboxylase subunit beta	protein-coding
757	chr1	156568754	156572416	+	0	NA	intron (NM_182679, intron 1 of 7)	AluSx|SINE|Alu	694	NM_015590	54865	Hs.193832	NM_015590	ENSG00000160818	GPATCH4	GPATC4	G-patch domain containing 4	protein-coding
83	chr1	227124174	227134231	+	0	NA	intron (NM_020247, intron 1 of 14)	AluSx1|SINE|Alu	1264	NM_020247	56997	Hs.118241	NM_020247	ENSG00000163050	COQ8A	ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9	coenzyme Q8A	protein-coding
310	chr1	39380478	39382493	+	0	NA	intron (NM_001304746, intron 2 of 7)	intron (NM_001304746, intron 2 of 7)	13700	NM_001304746	54933	Hs.524626	NM_017821	ENSG00000158315	RHBDL2	RRP2	rhomboid like 2	protein-coding
82	chr3	47513407	47525846	+	0	NA	Intergenic	Intergenic	-2177	NM_001320044	22937	Hs.531789	NM_012235	ENSG00000114650	SCAP	-	SREBF chaperone	protein-coding
396	chr15	41147730	41151273	+	0	NA	3' UTR (NM_181642, exon 11 of 11)	3' UTR (NM_181642, exon 11 of 11)	-12779	NR_146467	102724362	Hs.569458	NR_146466	ENSG00000261183	SPINT1-AS1	-	SPINT1 antisense RNA 1	ncRNA
833	chr5	76057914	76060164	+	0	NA	Intergenic	Intergenic	47171	NM_001311313	2149	Hs.482562	NM_001992	ENSG00000181104	F2R	CF2R|HTR|PAR-1|PAR1|TR	coagulation factor II thrombin receptor	protein-coding
607	chr20	48580789	48582881	+	0	NA	Intergenic	Intergenic	-17678	NM_005985	6615	Hs.48029	NM_005985	ENSG00000124216	SNAI1	SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1	snail family transcriptional repressor 1	protein-coding
466	chr17	61625403	61631836	+	0	NA	intron (NM_005828, intron 1 of 7)	intron (NM_005828, intron 1 of 7)	823	NR_073585	10238	Hs.410596	NM_005828	ENSG00000136485	DCAF7	AN11|HAN11|SWAN-1|WDR68	DDB1 and CUL4 associated factor 7	protein-coding
21	chr1	24619541	24622612	+	0	NA	Intergenic	Intergenic	-24736	NM_198173	57822	Hs.657920	NM_021180	ENSG00000158055	GRHL3	SOM|TFCP2L4|VWS2	grainyhead like transcription factor 3	protein-coding
8	chr3	138311142	138315068	+	0	NA	5' UTR (NM_024491, exon 1 of 18)	5' UTR (NM_024491, exon 1 of 18)	120	NM_001288964	80321	Hs.531962	NM_024491	ENSG00000114107	CEP70	BITE	centrosomal protein 70	protein-coding
162	chr5	158666442	158668744	+	0	NA	intron (NR_134261, intron 2 of 2)	L2c|LINE|L2	12870	NR_134261	105377682		NR_134261	ENSG00000253315	LINC01932	-	long intergenic non-protein coding RNA 1932	ncRNA
579	chr14	103160429	103164465	+	0	NA	intron (NM_015156, intron 3 of 11)	intron (NM_015156, intron 3 of 11)	-81369	NM_145726	7187	Hs.510528	NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
664	chr1	10269053	10273643	+	0	NA	intron (NM_015074, intron 1 of 46)	intron (NM_015074, intron 1 of 46)	584	NM_183416	23095	Hs.97858	NM_015074	ENSG00000054523	KIF1B	CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1	kinesin family member 1B	protein-coding
538	chr1	154953074	154969311	+	0	NA	exon (NM_001184892, exon 3 of 3)	exon (NM_001184892, exon 3 of 3)	-4870	NM_018655	55891	Hs.272399	NM_018655	ENSG00000163352	LENEP	LEP503	lens epithelial protein	protein-coding
161	chr22	22050174	22054663	+	0	NA	TTS (NM_148176)	TTS (NM_148176)	32145	NM_014337	23759	Hs.438587	NM_014337	ENSG00000100023	PPIL2	CYC4|CYP60|Cyp-60|UBOX7|hCyP-60	peptidylprolyl isomerase like 2	protein-coding
884	chr2	11364953	11387645	+	0	NA	intron (NM_004850, intron 4 of 32)	intron (NM_004850, intron 4 of 32)	80801	NM_152391	130814	Hs.274415	NM_152391	ENSG00000162976	PQLC3	C2orf22	PQ loop repeat containing 3	protein-coding
754	chr16	89281128	89288999	+	0	NA	intron (NM_182531, intron 1 of 5)	AluY|SINE|Alu	952	NM_182531	197320	Hs.647385	NM_182531	ENSG00000170100	ZNF778	-	zinc finger protein 778	protein-coding
724	chr21	36273799	36285480	+	0	NA	intron (NM_001754, intron 2 of 8)	MER112|DNA|hAT-Charlie	-18652	NM_001001890	861	Hs.149261	NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	runt related transcription factor 1	protein-coding
383	chr7	134046763	134049398	+	0	NA	Intergenic	Intergenic	-46253	NM_032826	84912	Hs.490181	NM_032826	ENSG00000205060	SLC35B4	YEA|YEA4	solute carrier family 35 member B4	protein-coding
7	chr17	37005564	37012402	+	0	NA	TTS (NR_002576)	TTS (NR_002576)	265	NR_002576	619505	Hs.738742	NR_002576	ENSG00000199293	SNORA21	ACA21	small nucleolar RNA, H/ACA box 21	snoRNA
826	chr19	49710480	49715699	+	0	NA	intron (NM_017636, intron 20 of 24)	AluSx1|SINE|Alu	52073	NM_001195227	54795	Hs.467101	NM_017636	ENSG00000130529	TRPM4	LTrpC4|PFHB1B|TRPM4B|hTRPM4	transient receptor potential cation channel subfamily M member 4	protein-coding
860	chr6	17724198	17726240	+	0	NA	Intergenic	Intergenic	17945	NR_134618	105374952	Hs.718703	NR_134616	ENSG00000272269	LOC105374952	-	uncharacterized LOC105374952	ncRNA
908	chr14	39581430	39585683	+	0	NA	promoter-TSS (NM_003616)	promoter-TSS (NM_003616)	68	NM_001009183	8487	Hs.652307	NM_003616	ENSG00000092208	GEMIN2	SIP1|SIP1-delta	gem nuclear organelle associated protein 2	protein-coding
370	chr22	20062113	20084447	+	0	NA	promoter-TSS (NR_037412)	promoter-TSS (NR_037412)	11	NR_037412	100500860		NR_037412	ENSG00000284140	MIR3618	-	microRNA 3618	ncRNA
662	chr19	47238998	47242073	+	0	NA	intron (NM_001039877, intron 3 of 17)	MIR|SINE|MIR	-8768	NM_024301	79147	Hs.515493	NM_024301	ENSG00000181027	FKRP	LGMD2I|MDC1C|MDDGA5|MDDGB5|MDDGC5	fukutin related protein	protein-coding
564	chr17	74542005	74544718	+	0	NA	Intergenic	Intergenic	7240	NM_001077620	768206	Hs.634380	NM_001077620	ENSG00000214140	PRCD	RP36	photoreceptor disc component	protein-coding
744	chr22	49904359	49906566	+	0	NA	intron (NR_110523, intron 1 of 4)	MLT1A0|LTR|ERVL-MaLR	31652	NR_037440	100500882		NR_037440	ENSG00000264139	MIR3667	-	microRNA 3667	ncRNA
116	chr21	34891256	34902276	+	0	NA	3' UTR (NM_175085, exon 11 of 11)	3' UTR (NM_175085, exon 11 of 11)	17698	NM_000819	2618	Hs.473648	NM_000819	ENSG00000159131	GART	AIRS|GARS|GARTF|PAIS|PGFT|PRGS	phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase	protein-coding
409	chr15	63501009	63511181	+	0	NA	intron (NM_016530, intron 1 of 7)	AluSg|SINE|Alu	24367	NM_016530	51762	Hs.389733	NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
846	chr17	26309133	26317315	+	0	NA	intron (NR_146896, intron 2 of 4)	MIR|SINE|MIR	5509	NR_146896	105371708	Hs.385535	NR_146896		LINC01992	-	long intergenic non-protein coding RNA 1992	ncRNA
111	chr21	45155648	45162163	+	0	NA	intron (NM_003681, intron 2 of 10)	AluY|SINE|Alu	-2360	NM_001331030	8566	Hs.284491	NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
376	chr20	49080092	49081840	+	0	NA	Intergenic	Intergenic	-45892	NM_002827	5770	Hs.417549	NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding
297	chr2	190468782	190481395	+	0	NA	Intergenic	Intergenic	-29551	NM_014585	30061	Hs.643005	NM_014585	ENSG00000138449	SLC40A1	FPN1|HFE4|IREG1|MST079|MSTP079|MTP1|SLC11A3	solute carrier family 40 member 1	protein-coding
644	chr11	62603374	62612138	+	0	NA	promoter-TSS (NM_001307977)	promoter-TSS (NM_001307977)	-128	NM_018093	54663	Hs.654620	NM_018093	ENSG00000133316	WDR74	-	WD repeat domain 74	protein-coding
299	chr6	116881785	116885361	+	0	NA	Intergenic	Intergenic	-8957	NM_015952	51389	Hs.532164	NM_015952	ENSG00000111832	RWDD1	CGI-24|PTD013	RWD domain containing 1	protein-coding
544	chr19	15541482	15544736	+	0	NA	intron (NM_001330395, intron 1 of 7)	CpG	236	NM_001330395	58525	Hs.442138	NM_021241	ENSG00000011451	WIZ	ZNF803	widely interspaced zinc finger motifs	protein-coding
189	chr17	42291256	42300170	+	0	NA	intron (NR_045058, intron 1 of 20)	intron (NR_045058, intron 1 of 20)	1328	NM_001076684	7343	Hs.89781	NM_014233	ENSG00000108312	UBTF	CONDBA|NOR-90|UBF|UBF-1|UBF1|UBF2	upstream binding transcription factor	protein-coding
670	chr16	20682991	20689969	+	0	NA	intron (NR_134918, intron 3 of 10)	HERV15-int|LTR|ERV1	16098	NR_134918	116285	Hs.306812	NM_052956	ENSG00000166743	ACSM1	BUCS1|MACS1	acyl-CoA synthetase medium chain family member 1	protein-coding
684	chrX	153984671	153999704	+	0	NA	intron (NM_001142463, intron 1 of 14)	AluSx|SINE|Alu	1170	NM_001288747	1736	Hs.4747	NM_001363	ENSG00000130826	DKC1	CBF5|DKC|DKCX|NAP57|NOLA4|XAP101	dyskerin pseudouridine synthase 1	protein-coding
302	chr7	73037632	73039464	+	0	NA	exon (NM_032954, exon 1 of 17)	exon (NM_032954, exon 1 of 17)	322	NM_032954	51085	Hs.647055	NM_032951	ENSG00000009950	MLXIPL	CHREBP|MIO|MLX|MONDOB|WBSCR14|WS-bHLH|bHLHd14	MLX interacting protein like	protein-coding
878	chr1	184017871	184024410	+	0	NA	intron (NM_001127394, intron 1 of 3)	intron (NM_001127394, intron 1 of 3)	355	NR_125335	116461	Hs.548197	NM_052965	ENSG00000198860	TSEN15	C1orf19|PCH2F|sen15	tRNA splicing endonuclease subunit 15	protein-coding
759	chr12	104801013	104803509	+	0	NA	Intergenic	Intergenic	-48431	NM_018413	50515	Hs.17569	NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537	carbohydrate sulfotransferase 11	protein-coding
970	chr4	38242443	38247206	+	0	NA	Intergenic	Intergenic	123249	NM_001253915	23216	Hs.176503	NM_015173	ENSG00000065882	TBC1D1	TBC|TBC1	TBC1 domain family member 1	protein-coding
808	chr7	45177400	45181610	+	0	NA	Intergenic	AluJr|SINE|Alu	-17862	NM_005856	10268	Hs.25691	NM_005856	ENSG00000122679	RAMP3	-	receptor activity modifying protein 3	protein-coding
346	chr5	71835721	71838070	+	0	NA	Intergenic	Intergenic	-16009	NR_105008	102503427	Hs.429280	NR_105008		LOC102503427	-	uncharacterized LOC102503427	ncRNA
841	chr4	48191965	48194338	+	0	NA	intron (NM_003215, intron 2 of 17)	MIR|SINE|MIR	-56878	NM_003328	7294	Hs.479669	NM_003328	ENSG00000074966	TXK	BTKL|PSCTK5|PTK4|RLK|TKL	TXK tyrosine kinase	protein-coding
147	chr22	18977678	18989749	+	0	NA	intron (NR_110533, intron 4 of 5)	intron (NR_110533, intron 4 of 5)	-21634	NR_024159	25787	Hs.106311	NR_024159	ENSG00000273032	DGCR9	DGS-A	DiGeorge syndrome critical region gene 9 (non-protein coding)	ncRNA
350	chr11	94796997	94804518	+	0	NA	non-coding (NR_103726, exon 1 of 2)	non-coding (NR_103726, exon 1 of 2)	716	NR_103726	10929	Hs.476680	NM_032102	ENSG00000263465	SRSF8	DSM-1|SFRS2B|SRP46	serine and arginine rich splicing factor 8	protein-coding
231	chr3	48288222	48289775	+	0	NA	intron (NM_016089, intron 1 of 3)	intron (NM_016089, intron 1 of 3)	6402	NM_016089	51385	Hs.172602	NM_016089	ENSG00000164048	ZNF589	SZF1	zinc finger protein 589	protein-coding
822	chr10	97881602	97893346	+	0	NA	Intergenic	Intergenic	-1998	NM_001278524	9849	Hs.600823	NM_014803	ENSG00000177853	ZNF518A	ZNF518	zinc finger protein 518A	protein-coding
694	chr16	30984126	30986103	+	0	NA	intron (NM_014712, intron 13 of 18)	intron (NM_014712, intron 13 of 18)	-11405	NM_001142777	80270	Hs.460618	NM_025193	ENSG00000099377	HSD3B7	CBAS1|PFIC4|SDR11E3	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding
589	chr19	18302036	18307071	+	0	NA	intron (NM_032683, intron 1 of 4)	intron (NM_032683, intron 1 of 4)	513	NM_032683	84769	Hs.515254	NM_032683	ENSG00000254858	MPV17L2	FKSG24	MPV17 mitochondrial inner membrane protein like 2	protein-coding
11	chr11	46525621	46530481	+	0	NA	intron (NM_001300731, intron 8 of 16)	intron (NM_001300731, intron 8 of 16)	-54612	NR_036117	100422827		NR_036117	ENSG00000265014	MIR3160-1	mir-3160-1	microRNA 3160-1	ncRNA
163	chr4	174147281	174153548	+	0	NA	intron (NM_017423, intron 1 of 11)	intron (NM_017423, intron 1 of 11)	-59611	NR_134242	101930370	Hs.563191	NR_134241	ENSG00000245213	LOC101930370	-	uncharacterized LOC101930370	ncRNA
166	chr17	73320933	73324005	+	0	NA	intron (NM_002086, intron 3 of 5)	intron (NM_002086, intron 3 of 5)	-36939	NM_001126122	60386	Hs.514470	NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
71	chr19	10206163	10208305	+	0	NA	exon (NM_031917, exon 2 of 6)	exon (NM_031917, exon 2 of 6)	6099	NM_001321411	83854	Hs.712850	NM_031917	ENSG00000130812	ANGPTL6	AGF|ARP5	angiopoietin like 6	protein-coding
178	chr7	44640349	44667017	+	0	NA	intron (NM_001003941, intron 1 of 8)	AluSp|SINE|Alu	7562	NM_001003941	4967	Hs.488181	NM_002541	ENSG00000105953	OGDH	AKGDH|E1k|OGDC	oxoglutarate dehydrogenase	protein-coding
220	chr15	66676573	66688558	+	0	NA	intron (NM_002755, intron 1 of 10)	intron (NM_002755, intron 1 of 10)	3354	NM_002755	5604	Hs.145442	NM_002755	ENSG00000169032	MAP2K1	CFC3|MAPKK1|MEK1|MKK1|PRKMK1	mitogen-activated protein kinase kinase 1	protein-coding
854	chr1	40625106	40631065	+	0	NA	intron (NM_012421, intron 1 of 7)	intron (NM_012421, intron 1 of 7)	1044	NM_012421	6018	Hs.205627	NM_012421	ENSG00000117000	RLF	ZN-15L|ZNF292L	rearranged L-myc fusion	protein-coding
489	chr11	58534530	58547659	+	0	NA	Intergenic	HERV1_I-int|LTR|ERV1	-41647	NM_005838	10249	Hs.145384	NM_005838	ENSG00000149124	GLYAT	ACGNAT|CAT|GAT	glycine-N-acyltransferase	protein-coding
506	chr5	41881218	41886311	+	0	NA	Intergenic	L1PA13|LINE|L1	-12973	NM_000436	5019	Hs.278277	NM_000436	ENSG00000083720	OXCT1	OXCT|SCOT	3-oxoacid CoA-transferase 1	protein-coding
112	chr17	7216299	7221046	+	0	NA	promoter-TSS (NM_004489)	promoter-TSS (NM_004489)	-14	NM_004489	2874	Hs.438219	NM_004489	ENSG00000132522	GPS2	AMF-1	G protein pathway suppressor 2	protein-coding
192	chr14	102219369	102244932	+	0	NA	intron (NM_001352915, intron 2 of 14)	AluSq2|SINE|Alu	3443	NM_001352915	5527	Hs.368264	NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
230	chr6	27340903	27345774	+	0	NA	promoter-TSS (NR_024553)	promoter-TSS (NR_024553)	-185	NR_024553	7754	Hs.8198	NR_002722		ZNF204P	ZNF184-Lp|ZNF204|ZNF315P|b24o18.1	zinc finger protein 204, pseudogene	pseudo
127	chr4	83342305	83363159	+	0	NA	intron (NM_021204, intron 1 of 5)	intron (NM_021204, intron 1 of 5)	1099	NM_001292017	58478	Hs.18442	NM_021204	ENSG00000145293	ENOPH1	E1|MASA|MST145|mtnC	enolase-phosphatase 1	protein-coding
969	chr13	80033189	80034488	+	0	NA	Intergenic	L2b|LINE|L2	-21421	NM_001161407	54602	Hs.525093	NM_019080	ENSG00000102471	NDFIP2	N4WBP5A	Nedd4 family interacting protein 2	protein-coding
896	chr17	46562767	46571676	+	0	NA	Intergenic	MIRc|SINE|MIR	41051	NM_002144	3211	Hs.99992	NM_002144	ENSG00000120094	HOXB1	HCFP3|HOX2|HOX2I|Hox-2.9	homeobox B1	protein-coding
41	chr5	89838328	89864037	+	0	NA	Intergenic	Intergenic	-3435	NR_003149	84059	Hs.591777	NM_032119	ENSG00000164199	ADGRV1	FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b	adhesion G protein-coupled receptor V1	protein-coding
795	chr16	2931884	2935099	+	0	NA	intron (NM_138439, intron 1 of 3)	CpG	295	NM_001142499	114984	Hs.534525	NM_138439	ENSG00000162076	FLYWCH2	-	FLYWCH family member 2	protein-coding
286	chr2	131961873	131963162	+	0	NA	Intergenic	L1M1|LINE|L1	-13407	NM_001083538	445582	Hs.686146	NM_001004054	ENSG00000188219	POTEE	A26C1|A26C1A|CT104.2|POTE-2|POTE2|POTE2gamma	POTE ankyrin domain family member E	protein-coding
973	chr1	185012482	185018109	+	0	NA	intron (NM_007212, intron 1 of 6)	intron (NM_007212, intron 1 of 6)	744	NM_007212	6045	Hs.591490	NM_007212	ENSG00000121481	RNF2	BAP-1|BAP1|DING|HIPI3|RING1B|RING2	ring finger protein 2	protein-coding
56	chr15	64427909	64430776	+	0	NA	intron (NM_001242933, intron 14 of 14)	intron (NM_001242933, intron 14 of 14)	-14574	NR_073534	79856	Hs.744250	NM_024798	ENSG00000157734	SNX22	-	sorting nexin 22	protein-coding
820	chr15	40718855	40720156	+	0	NA	intron (NR_148925, intron 13 of 13)	intron (NR_148925, intron 13 of 13)	-12415	NM_001301132	22893	Hs.22109	NM_014952	ENSG00000140320	BAHD1	-	bromo adjacent homology domain containing 1	protein-coding
238	chr17	25923469	25933215	+	0	NA	intron (NM_014238, intron 10 of 20)	intron (NM_014238, intron 10 of 20)	-29832	NM_001330163	3965	Hs.81337	NM_002308	ENSG00000168961	LGALS9	HUAT|LGALS9A	galectin 9	protein-coding
790	chr22	22953513	22955635	+	0	NA	Intergenic	L1MEc|LINE|L1	32438	NR_024591	25812	Hs.367764	NR_024591		POM121L1P	POM121L1	POM121 transmembrane nucleoporin like 1, pseudogene	pseudo
726	chr6	33867356	33875286	+	0	NA	Intergenic	Intergenic	4409	NR_106982	102466816		NR_106982	ENSG00000276824	MIR7159	hsa-mir-7159	microRNA 7159	ncRNA
63	chr4	127647543	127668228	+	0	NA	Intergenic	Intergenic	-896202	NM_015693	27152	Hs.391481	NM_015693	ENSG00000164066	INTU	CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20	inturned planar cell polarity protein	protein-coding
504	chr19	49981517	49983000	+	0	NA	exon (NM_001278638, exon 6 of 9)	exon (NM_001278638, exon 6 of 9)	4440	NM_001204503	2323	Hs.428	NM_001459	ENSG00000090554	FLT3LG	FL|FLG3L|FLT3L	fms related tyrosine kinase 3 ligand	protein-coding
482	chr16	57708672	57712151	+	0	NA	intron (NM_170776, intron 3 of 11)	intron (NM_170776, intron 3 of 11)	8254	NM_001308360	222487	Hs.383403	NM_170776	ENSG00000182885	ADGRG3	GPR97|PB99|PGR26	adhesion G protein-coupled receptor G3	protein-coding
450	chr5	32294913	32301606	+	0	NA	intron (NM_001040446, intron 1 of 15)	intron (NM_001040446, intron 1 of 15)	14855	NM_001040446	54545	Hs.481836	NM_019061	ENSG00000150712	MTMR12	3-PAP|PIP3AP	myotubularin related protein 12	protein-coding
421	chr5	84939315	84946794	+	0	NA	Intergenic	HERVP71A-int|LTR|ERV1	-635208	NR_003719	285622	Hs.449272	NR_003719		NBPF22P	-	NBPF member 22, pseudogene	pseudo
532	chr17	74703624	74708672	+	0	NA	promoter-TSS (NR_130926)	promoter-TSS (NR_130926)	-469	NR_130926	439921	Hs.250723	NM_198530	ENSG00000182534	MXRA7	-	matrix remodeling associated 7	protein-coding
366	chr19	37061174	37066986	+	0	NA	non-coding (NR_110706, exon 1 of 3)	non-coding (NR_110706, exon 1 of 3)	108	NR_110703	101927599	Hs.515376	NR_110703	ENSG00000233527	ZNF529-AS1	-	ZNF529 antisense RNA 1	ncRNA
15	chr16	79444974	79448325	+	0	NA	Intergenic	MIRc|SINE|MIR	187973	NM_001031804	4094	Hs.134859	NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
60	chr1	203649140	203656528	+	0	NA	intron (NM_001001396, intron 2 of 21)	AluJb|SINE|Alu	-45875	NR_003019	677843	Hs.676135	NR_003019	ENSG00000221643	SNORA77	ACA63|SNORA77A	small nucleolar RNA, H/ACA box 77	snoRNA
57	chr5	54598603	54613320	+	0	NA	intron (NM_015360, intron 1 of 26)	intron (NM_015360, intron 1 of 26)	2385	NM_015360	23517	Hs.274531	NM_015360	ENSG00000039123	MTREX	Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118	Mtr4 exosome RNA helicase	protein-coding
629	chr5	148921807	148934471	+	0	NA	intron (NM_001025105, intron 2 of 10)	AluSx|SINE|Alu	1755	NM_001271742	1452	Hs.529862	NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
597	chr8	126282485	126286105	+	0	NA	intron (NM_173685, intron 5 of 7)	AluY|SINE|Alu	-158268	NM_025195	10221	Hs.444947	NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
277	chr6	14741435	14746100	+	0	NA	Intergenic	Intergenic	-458082	NR_108096	102216342	Hs.563409	NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
941	chr22	31361553	31368228	+	0	NA	promoter-TSS (NM_001303256)	promoter-TSS (NM_001303256)	-307	NR_002323	55000	Hs.554829	NR_002323	ENSG00000253352	TUG1	LINC00080|NCRNA00080|TI-227H	taurine up-regulated 1 (non-protein coding)	ncRNA
703	chr6	14932559	14933885	+	0	NA	Intergenic	Intergenic	-312984	NM_004973	3720	Hs.269059	NM_004973	ENSG00000008083	JARID2	JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
821	chr7	1541165	1548435	+	0	NA	promoter-TSS (NM_001080453)	promoter-TSS (NM_001080453)	-782	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding
660	chr7	156917723	156959210	+	0	NA	intron (NM_014671, intron 1 of 22)	L1MC2|LINE|L1	6811	NM_014671	9690	Hs.118351	NM_014671	ENSG00000009335	UBE3C	HECTH2	ubiquitin protein ligase E3C	protein-coding
381	chr19	54957166	54964038	+	0	NA	promoter-TSS (NR_126418)	promoter-TSS (NR_126418)	262	NM_052925	114823	Hs.502378	NM_052925	ENSG00000167615	LENG8	pp13842	leukocyte receptor cluster member 8	protein-coding
484	chr6	34852979	34858987	+	0	NA	promoter-TSS (NM_001270488)	promoter-TSS (NM_001270488)	-135	NM_005643	6882	Hs.112444	NM_005643	ENSG00000064995	TAF11	MGC:15243|PRO2134|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding
475	chr8	95830565	95832600	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-3936	NM_017864	55656	Hs.727669	NM_017864	ENSG00000164941	INTS8	C8orf52|INT8	integrator complex subunit 8	protein-coding
599	chr14	103160429	103164465	+	0	NA	intron (NM_015156, intron 3 of 11)	intron (NM_015156, intron 3 of 11)	-81369	NM_145726	7187	Hs.510528	NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
425	chr2	158770486	158800110	+	0	NA	Intergenic	Tigger4|DNA|TcMar-Tigger	-52924	NM_001347666	90	Hs.470316	NM_001105	ENSG00000115170	ACVR1	ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI	activin A receptor type 1	protein-coding
10	chr4	95127012	95131876	+	0	NA	promoter-TSS (NR_125922)	promoter-TSS (NR_125922)	209	NR_045644	56916	Hs.410406	NM_020159	ENSG00000163104	SMARCAD1	ADERM|BASNS|ETL1|HEL1	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding
680	chr14	36730568	36734877	+	0	NA	Intergenic	Intergenic	57160	NM_001144891	51562	Hs.368647	NM_016586	ENSG00000151332	MBIP	-	MAP3K12 binding inhibitory protein 1	protein-coding
44	chrX	131050210	131053627	+	0	NA	Intergenic	L1M4b|LINE|L1	-87247	NR_152876	286467	Hs.720385	NR_026975	ENSG00000213468	FIRRE	LINC01200	firre intergenic repeating RNA element	ncRNA
622	chr3	142787815	142818599	+	0	NA	Intergenic	AluY|SINE|Alu	-35411	NM_004267	9435	Hs.8786	NM_004267	ENSG00000175040	CHST2	C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1	carbohydrate sulfotransferase 2	protein-coding
364	chr14	100686693	100692100	+	0	NA	Intergenic	Intergenic	-15706	NM_003403	7528	Hs.388927	NM_003403	ENSG00000100811	YY1	DELTA|GADEVS|INO80S|NF-E1|UCRBP|YIN-YANG-1	YY1 transcription factor	protein-coding
818	chr3	101203296	101204743	+	0	NA	intron (NM_001077203, intron 3 of 22)	L1PBa|LINE|L1	28066	NM_001282801	57337	Hs.529551	NM_020654	ENSG00000138468	SENP7	-	SUMO specific peptidase 7	protein-coding
642	chr11	47514273	47517894	+	0	NA	promoter-TSS (NM_198700)	promoter-TSS (NM_198700)	-10	NM_198700	10658	Hs.595333	NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
405	chr5	176510897	176517870	+	0	NA	intron (NM_213647, intron 1 of 17)	CpG	510	NM_002011	2264	Hs.165950	NM_002011	ENSG00000160867	FGFR4	CD334|JTK2|TKF	fibroblast growth factor receptor 4	protein-coding
93	chr3	196156249	196161260	+	0	NA	intron (NR_046745, intron 1 of 1)	CpG	498	NR_046745	100874034	Hs.617990	NR_046745		UBXN7-AS1	-	UBXN7 antisense RNA 1	ncRNA
126	chr3	47828446	47832724	+	0	NA	Intergenic	AluSc|SINE|Alu	-7180	NM_003074	6599	Hs.476179	NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|Rsc8|SRG3|SWI3	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1	protein-coding
263	chr5	53595878	53625489	+	0	NA	Intergenic	Intergenic	-4280	NM_019087	54622	Hs.659125	NM_019087	ENSG00000185305	ARL15	ARFRP2	ADP ribosylation factor like GTPase 15	protein-coding
304	chr17	80168324	80178324	+	0	NA	Intergenic	Intergenic	-2570	NM_001316321	284001	Hs.631724	NM_152675	ENSG00000176155	CCDC57	-	coiled-coil domain containing 57	protein-coding
972	chr2	86112899	86119383	+	0	NA	promoter-TSS (NM_001354229)	promoter-TSS (NM_001354229)	16	NM_001354227	8869	Hs.415117	NM_003896	ENSG00000115525	ST3GAL5	SATI|SIAT9|SIATGM3S|SPDRS|ST3Gal V|ST3GalV	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding
805	chr11	117880924	117884581	+	0	NA	Intergenic	Intergenic	25646	NM_001558	3587	Hs.504035	NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
477	chr10	70815278	70818403	+	0	NA	Intergenic	Intergenic	-30362	NM_001321053	5552	Hs.1908	NM_002727	ENSG00000122862	SRGN	PPG|PRG|PRG1	serglycin	protein-coding
410	chr2	69661964	69667219	+	0	NA	non-coding (NR_045632, exon 1 of 6)	non-coding (NR_045632, exon 1 of 6)	169	NM_001002756	27247	Hs.430439	NM_015700	ENSG00000169599	NFU1	CGI-33|HIRIP|HIRIP5|MMDS1|NIFUC|Nfu|NifU	NFU1 iron-sulfur cluster scaffold	protein-coding
128	chr7	133999109	134003658	+	0	NA	intron (NM_032826, intron 1 of 9)	CpG	444	NM_032826	84912	Hs.490181	NM_032826	ENSG00000205060	SLC35B4	YEA|YEA4	solute carrier family 35 member B4	protein-coding
198	chrX	54833244	54837289	+	0	NA	promoter-TSS (NM_201222)	promoter-TSS (NM_201222)	-227	NM_201222	10916	Hs.522665	NM_014599	ENSG00000102316	MAGED2	11B6|BARTS5|BCG-1|BCG1|HCA10|MAGE-D2	MAGE family member D2	protein-coding
386	chr12	124455492	124461035	+	0	NA	promoter-TSS (NM_001304957)	promoter-TSS (NM_001304957)	501	NM_152437	144348	Hs.524828	NM_152437	ENSG00000179195	ZNF664	ZFOC1|ZNF176	zinc finger protein 664	protein-coding
483	chr3	50264109	50267384	+	0	NA	TTS (NR_106714)	TTS (NR_106714)	878	NR_106714	102464817		NR_106714	ENSG00000275334	MIR5787	hsa-mir-5787	microRNA 5787	ncRNA
700	chr5	84932222	84935337	+	0	NA	Intergenic	L1MA5|LINE|L1	-644483	NR_003719	285622	Hs.449272	NR_003719		NBPF22P	-	NBPF member 22, pseudogene	pseudo
464	chr6	27299783	27302422	+	0	NA	Intergenic	Intergenic	8562	NR_045612	387316	Hs.326753	NM_032030		VN1R10P	FKSG83|VNR6I1P|b24o18.2|hs6V1-1p	vomeronasal 1 receptor 10 pseudogene	pseudo
944	chr1	162387504	162392485	+	0	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	-8066	NM_053282	117157	Hs.350581	NM_053282	ENSG00000198574	SH2D1B	EAT2	SH2 domain containing 1B	protein-coding
236	chr11	57446872	57450699	+	0	NA	intron (NM_015457, intron 2 of 11)	intron (NM_015457, intron 2 of 11)	13311	NM_015457	25921	Hs.27239	NM_015457	ENSG00000156599	ZDHHC5	DHHC5|ZNF375	zinc finger DHHC-type containing 5	protein-coding
133	chr11	68712664	68714028	+	0	NA	Intergenic	L1MB7|LINE|L1	35109	NM_198923	116512	Hs.527802	NM_198923	ENSG00000172938	MRGPRD	MRGD|TGR7	MAS related GPR family member D	protein-coding
64	chr20	48687171	48688862	+	0	NA	Intergenic	Intergenic	-29850	NR_051976	100887755	Hs.195705	NR_051976		TRERNA1	LINC00651|treRNA	translation regulatory long non-coding RNA 1	ncRNA
902	chr1	10568915	10575150	+	0	NA	intron (NM_004565, intron 2 of 8)	AluY|SINE|Alu	37029	NM_004565	5195	Hs.149983	NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
954	chr4	1192973	1196923	+	0	NA	intron (NR_024569, intron 3 of 3)	intron (NR_024569, intron 3 of 3)	7802	NR_024569	100130872	Hs.302963	NR_024569		LOC100130872	-	uncharacterized LOC100130872	ncRNA
991	chr17	55061995	55064438	+	0	NA	intron (NM_021626, intron 3 of 12)	intron (NM_021626, intron 3 of 12)	7748	NM_021626	59342	Hs.514950	NM_021626	ENSG00000121064	SCPEP1	HSCP1|RISC	serine carboxypeptidase 1	protein-coding
951	chr12	50947675	50950555	+	0	NA	intron (NM_173602, intron 1 of 37)	HAL1|LINE|L1	50347	NM_173602	57609	Hs.505516	NM_020849	ENSG00000066084	DIP2B	-	disco interacting protein 2 homolog B	protein-coding
252	chr20	57224320	57230200	+	0	NA	intron (NM_001134772, intron 1 of 7)	(TCTG)n|Simple_repeat|Simple_repeat	951	NR_037945	100534593	Hs.654868	NR_037945	ENSG00000254995	STX16-NPEPL1	-	STX16-NPEPL1 readthrough (NMD candidate)	ncRNA
158	chr3	137891388	137895862	+	0	NA	exon (NM_016216, exon 1 of 8)	exon (NM_016216, exon 1 of 8)	166	NM_016216	51163	Hs.477700	NM_016216	ENSG00000138231	DBR1	-	debranching RNA lariats 1	protein-coding
321	chr11	64689732	64693931	+	0	NA	promoter-TSS (NM_006244)	promoter-TSS (NM_006244)	-312	NM_006244	5526	Hs.75199	NM_006244	ENSG00000068971	PPP2R5B	B56B|B56beta|PR61B	protein phosphatase 2 regulatory subunit B'beta	protein-coding
323	chr1	100909129	100910981	+	0	NA	intron (NM_001319212, intron 7 of 13)	L2a|LINE|L2	92032	NM_033313	8556	Hs.127411	NM_003672	ENSG00000079335	CDC14A	DFNB105|cdc14|hCDC14	cell division cycle 14A	protein-coding
892	chr14	23472961	23483284	+	0	NA	intron (NM_001130706, intron 1 of 7)	intron (NM_001130706, intron 1 of 7)	1288	NM_001130708	60686	Hs.255874	NM_021944	ENSG00000100802	C14orf93	RTFC	chromosome 14 open reading frame 93	protein-coding
107	chr10	75806725	75808176	+	0	NA	intron (NM_014000, intron 2 of 21)	intron (NM_014000, intron 2 of 21)	49578	NM_003373	7414	Hs.643896	NM_003373	ENSG00000035403	VCL	CMD1W|CMH15|HEL114|MV|MVCL	vinculin	protein-coding
819	chr19	46079747	46082035	+	0	NA	intron (NM_025136, intron 1 of 1)	L1MC4|LINE|L1	7231	NM_001017989	80207	Hs.466945	NM_025136	ENSG00000125741	OPA3	MGA3	OPA3, outer mitochondrial membrane lipid metabolism regulator	protein-coding
196	chr3	52250724	52254091	+	0	NA	Intergenic	Intergenic	7772	NM_017442	54106	Hs.87968	NM_017442	ENSG00000239732	TLR9	CD289	toll like receptor 9	protein-coding
710	chr4	37826008	37832591	+	0	NA	intron (NM_018290, intron 1 of 13)	intron (NM_018290, intron 1 of 13)	1017	NM_018290	55276	Hs.23363	NM_018290	ENSG00000169299	PGM2	MSTP006	phosphoglucomutase 2	protein-coding
26	chr5	148179098	148189518	+	0	NA	Intergenic	MIRc|SINE|MIR	-21848	NM_000024	154	Hs.2551	NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
429	chr1	153640327	153646267	+	0	NA	intron (NM_004515, intron 1 of 13)	intron (NM_004515, intron 1 of 13)	207	NM_004515	3608	Hs.75117	NM_004515	ENSG00000143621	ILF2	NF45|PRO3063	interleukin enhancer binding factor 2	protein-coding
233	chr17	78516502	78521944	+	0	NA	5' UTR (NM_001163034, exon 1 of 30)	5' UTR (NM_001163034, exon 1 of 30)	598	NM_020761	57521	Hs.133044	NM_020761	ENSG00000141564	RPTOR	KOG1|Mip1	regulatory associated protein of MTOR complex 1	protein-coding
737	chr9	131530209	131535897	+	0	NA	intron (NM_006336, intron 1 of 15)	intron (NM_006336, intron 1 of 15)	1160	NM_006336	10444	Hs.147950	NM_006336	ENSG00000160445	ZER1	C9orf60|ZYG|ZYG11BL	zyg-11 related cell cycle regulator	protein-coding
786	chr3	4381713	4383360	+	0	NA	Intergenic	Intergenic	37548	NM_001320676	6419	Hs.475300	NM_006515	ENSG00000170364	SETMAR	METNASE|Mar1	SET domain and mariner transposase fusion gene	protein-coding
415	chr3	25632710	25636125	+	0	NA	intron (NR_110893, intron 5 of 6)	MIRb|SINE|MIR	71446	NM_001068	7155	Hs.475733	NM_001068	ENSG00000077097	TOP2B	TOPIIB|top2beta	DNA topoisomerase II beta	protein-coding
379	chr1	155505211	155507704	+	0	NA	intron (NM_018489, intron 1 of 27)	AluJo|SINE|Alu	-25376	NR_147964	645676	Hs.568693	NR_027023	ENSG00000235919	ASH1L-AS1	-	ASH1L antisense RNA 1	ncRNA
925	chr6	17855176	17895704	+	0	NA	intron (NM_022113, intron 3 of 38)	L1PB1|LINE|L1	112414	NM_001243423	63971	Hs.94499	NM_022113	ENSG00000137177	KIF13A	RBKIN|bA500C11.2	kinesin family member 13A	protein-coding
794	chr6	14863783	14865399	+	0	NA	Intergenic	Intergenic	-381615	NM_004973	3720	Hs.269059	NM_004973	ENSG00000008083	JARID2	JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
755	chr19	16689690	16701624	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	-12464	NM_024881	79939	Hs.620596	NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
400	chr6	158398538	158405493	+	0	NA	promoter-TSS (NM_003898)	promoter-TSS (NM_003898)	-873	NM_003898	8871	Hs.434494	NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
678	chr5	134589745	134592277	+	0	NA	intron (NM_001277348, intron 3 of 5)	L1ME2|LINE|L1	-7144	NR_037895	340073	Hs.434422	NR_037895	ENSG00000249647	C5orf66-AS2	-	C5orf66 antisense RNA 2	ncRNA
221	chr14	34545650	34548669	+	0	NA	Intergenic	L2|LINE|L2	-126875	NM_022073	112399	Hs.135507	NM_022073	ENSG00000129521	EGLN3	HIFP4H3|HIFPH3|PHD3	egl-9 family hypoxia inducible factor 3	protein-coding
598	chr7	103625262	103639553	+	0	NA	Intergenic	Intergenic	-2444	NM_005045	5649	Hs.655654	NM_005045	ENSG00000189056	RELN	ETL7|LIS2|PRO1598|RL	reelin	protein-coding
42	chr1	1289968	1296101	+	0	NA	intron (NM_001282583, intron 1 of 9)	AluSq2|SINE|Alu	893	NM_001282585	54587	Hs.515687	NM_032348	ENSG00000162576	MXRA8	ASP3	matrix remodeling associated 8	protein-coding
67	chr11	9189839	9192729	+	0	NA	intron (NM_001348748, intron 11 of 23)	intron (NM_001348748, intron 11 of 23)	75374	NR_027713	283102	Hs.689472	NR_027713	ENSG00000213538	KRT8P41	-	keratin 8 pseudogene 41	pseudo
437	chr19	1810104	1815037	+	0	NA	promoter-TSS (NR_047593)	promoter-TSS (NR_047593)	-295	NR_047593	148229	Hs.306212	NM_138813	ENSG00000130270	ATP8B3	ATPIK	ATPase phospholipid transporting 8B3	protein-coding
928	chr7	99866688	99870721	+	0	NA	intron (NM_178831, intron 1 of 4)	intron (NM_178831, intron 1 of 4)	1151	NR_028038	352954	Hs.556063	NM_178831	ENSG00000239521	CASTOR3	GATS|STAG3OS	CASTOR family member 3	protein-coding
432	chr11	93703462	93709444	+	0	NA	Intergenic	LTR22C|LTR|ERVK	-47925	NM_001098672	341208	Hs.669645	NM_001098672	ENSG00000181333	HEPHL1	-	hephaestin like 1	protein-coding
79	chr12	6538582	6541137	+	0	NA	Intergenic	L1MC4a|LINE|L1	-14192	NM_001242	939	Hs.355307	NM_001242	ENSG00000139193	CD27	S152|S152. LPFS2|T14|TNFRSF7|Tp55	CD27 molecule	protein-coding
142	chr6	24663860	24671293	+	0	NA	promoter-TSS (NM_016614)	promoter-TSS (NM_016614)	313	NM_001160094	55856	Hs.731605	NM_018473	ENSG00000112304	ACOT13	HT012|PNAS-27|THEM2	acyl-CoA thioesterase 13	protein-coding
918	chr22	29659406	29667850	+	0	NA	promoter-TSS (NM_013986)	promoter-TSS (NM_013986)	356	NM_012265	25807	Hs.106730	NM_012265	ENSG00000100263	RHBDD3	C22orf3|HS984G1A|PTAG	rhomboid domain containing 3	protein-coding
186	chr12	110515642	110520476	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-6615	NR_148515	400073	Hs.44817	NM_207435	ENSG00000174456	C12orf76	-	chromosome 12 open reading frame 76	protein-coding
635	chr5	175872515	175877791	+	0	NA	promoter-TSS (NM_014613)	promoter-TSS (NM_014613)	-203	NM_014613	23197	Hs.484242	NM_014613	ENSG00000113194	FAF2	ETEA|UBXD8|UBXN3B	Fas associated factor family member 2	protein-coding
645	chr19	45090096	45096548	+	0	NA	Intergenic	MSTC|LTR|ERVL-MaLR	-23618	NM_001205280	147710	Hs.512509	NM_001205280	ENSG00000216588	IGSF23	-	immunoglobulin superfamily member 23	protein-coding
216	chr2	171144941	171174024	+	0	NA	intron (NM_001083615, intron 7 of 33)	intron (NM_001083615, intron 7 of 33)	47971	NR_110576	101929753	Hs.534101	NR_110576		LOC101929753	-	uncharacterized LOC101929753	ncRNA
906	chr18	77719545	77722836	+	0	NA	Intergenic	AluJo|SINE|Alu	-3392	NM_001136180	440498	Hs.191582	NM_001136180	ENSG00000226742	HSBP1L1	-	heat shock factor binding protein 1 like 1	protein-coding
624	chr2	47314819	47317292	+	0	NA	intron (NM_001163561, intron 6 of 6)	intron (NM_001163561, intron 6 of 6)	66462	NM_173649	285051	Hs.531575	NM_173649	ENSG00000239605	STPG4	C2orf61|GSE	sperm-tail PG-rich repeat containing 4	protein-coding
789	chr4	177238356	177246059	+	0	NA	intron (NM_021928, intron 1 of 4)	intron (NM_021928, intron 1 of 4)	1117	NM_021928	60559	Hs.42194	NM_021928	ENSG00000129128	SPCS3	PRO3567|SPC22/23|SPC3|YLR066W	signal peptidase complex subunit 3	protein-coding
495	chr12	111942722	111944802	+	0	NA	intron (NM_002973, intron 14 of 24)	L1MB8|LINE|L1	71096	NM_001291424	10019	Hs.506784	NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
40	chr1	28741322	28746477	+	0	NA	intron (NM_001350160, intron 3 of 14)	MER44B|DNA|TcMar-Tigger	-20762	NM_023923	65979	Hs.225641	NM_023923	ENSG00000204138	PHACTR4	PPP1R124	phosphatase and actin regulator 4	protein-coding
317	chr1	1331510	1345205	+	0	NA	TTS (NR_015434)	TTS (NR_015434)	3447	NR_015434	148413	Hs.741357	NR_015434	ENSG00000224870	LOC148413	-	uncharacterized LOC148413	ncRNA
500	chr11	3869726	3871231	+	0	NA	Intergenic	L2c|LINE|L2	-6455	NM_001277962	6786	Hs.501735	NM_003156	ENSG00000167323	STIM1	D11S4896E|GOK|IMD10|STRMK|TAM|TAM1	stromal interaction molecule 1	protein-coding
417	chr19	57898346	57903948	+	0	NA	promoter-TSS (NM_152909)	promoter-TSS (NM_152909)	-71	NM_001172773	147694	Hs.126905	NM_152909	ENSG00000188785	ZNF548	-	zinc finger protein 548	protein-coding
742	chr3	47951338	47953650	+	0	NA	intron (NM_001134364, intron 8 of 17)	intron (NM_001134364, intron 8 of 17)	61449	NR_031595	100302232		NR_031595	ENSG00000221585	MIR1226	MIRN1226|hsa-mir-1226|mir-1226	microRNA 1226	ncRNA
986	chr17	37005564	37012402	+	0	NA	TTS (NR_002576)	TTS (NR_002576)	265	NR_002576	619505	Hs.738742	NR_002576	ENSG00000199293	SNORA21	ACA21	small nucleolar RNA, H/ACA box 21	snoRNA
347	chr4	922820	928824	+	0	NA	promoter-TSS (NM_001297428)	promoter-TSS (NM_001297428)	-353	NM_001297424	84286	Hs.478936	NM_032326	ENSG00000127419	TMEM175	hTMEM175	transmembrane protein 175	protein-coding
983	chrX	154001476	154017052	+	0	NA	intron (NM_002436, intron 11 of 11)	L2b|LINE|L2	5991	NR_002984	677835	Hs.745526	NR_002984	ENSG00000206693	SNORA56	ACA56	small nucleolar RNA, H/ACA box 56	snoRNA
586	chr12	124455492	124461035	+	0	NA	promoter-TSS (NM_001304957)	promoter-TSS (NM_001304957)	501	NM_152437	144348	Hs.524828	NM_152437	ENSG00000179195	ZNF664	ZFOC1|ZNF176	zinc finger protein 664	protein-coding
837	chr2	85529202	85566985	+	0	NA	3' UTR (NM_001206844, exon 5 of 5)	3' UTR (NM_001206844, exon 5 of 5)	7326	NM_001206840	10618	Hs.593382	NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2	trans-golgi network protein 2	protein-coding
809	chr22	18391311	18408720	+	0	NA	intron (NM_015241, intron 1 of 31)	L2a|LINE|L2	-10363	NM_001136004	57553	Hs.528024	NM_015241	ENSG00000243156	MICAL3	MICAL-3	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding
556	chr11	94705173	94708068	+	0	NA	promoter-TSS (NM_018039)	promoter-TSS (NM_018039)	156	NM_016403	51503	Hs.503597	NM_016403	ENSG00000150316	CWC15	AD002|C11orf5|Cwf15|HSPC148|ORF5	CWC15 spliceosome associated protein homolog	protein-coding
946	chr9	131530209	131535897	+	0	NA	intron (NM_006336, intron 1 of 15)	intron (NM_006336, intron 1 of 15)	1160	NM_006336	10444	Hs.147950	NM_006336	ENSG00000160445	ZER1	C9orf60|ZYG|ZYG11BL	zyg-11 related cell cycle regulator	protein-coding
640	chr17	30332866	30337601	+	0	NA	intron (NM_001321350, intron 1 of 14)	intron (NM_001321350, intron 1 of 14)	342	NM_001321350	114659	Hs.514071	NM_052888	ENSG00000185158	LRRC37B	LRRC37	leucine rich repeat containing 37B	protein-coding
348	chr6	42227478	42229587	+	0	NA	intron (NM_033502, intron 8 of 17)	intron (NM_033502, intron 8 of 17)	-42899	NM_018141	55173	Hs.380887	NM_018141	ENSG00000048544	MRPS10	MRP-S10|PNAS-122	mitochondrial ribosomal protein S10	protein-coding
191	chr19	12885158	12919964	+	0	NA	5' UTR (NM_002229, exon 1 of 1)	5' UTR (NM_002229, exon 1 of 1)	251	NM_002229	3726	Hs.25292	NM_002229	ENSG00000171223	JUNB	AP-1	JunB proto-oncogene, AP-1 transcription factor subunit	protein-coding
976	chr20	39190385	39193815	+	0	NA	Intergenic	Intergenic	125780	NM_005461	9935	Hs.169487	NM_005461	ENSG00000204103	MAFB	DURS3|KRML|MCTO	MAF bZIP transcription factor B	protein-coding
608	chr1	32586533	32600905	+	0	NA	intron (NM_012316, intron 1 of 13)	intron (NM_012316, intron 1 of 13)	20075	NM_012316	23633	Hs.470588	NM_012316	ENSG00000025800	KPNA6	IPOA7|KPNA7	karyopherin subunit alpha 6	protein-coding
148	chr22	19613759	19624558	+	0	NA	Intergenic	AluSz|SINE|Alu	-64796	NR_024381	150185	Hs.719752	NR_024381		LINC00895	-	long intergenic non-protein coding RNA 895	ncRNA
527	chr19	48756580	48764721	+	0	NA	non-coding (NR_040599, exon 2 of 2)	non-coding (NR_040599, exon 2 of 2)	-1447	NM_001351782	22900	Hs.68846	NM_014959	ENSG00000105483	CARD8	CARDINAL|DACAR|DAKAR|NDPP|NDPP1|TUCAN	caspase recruitment domain family member 8	protein-coding
903	chr10	101768461	101770758	+	0	NA	5' UTR (NM_015221, exon 1 of 17)	5' UTR (NM_015221, exon 1 of 17)	101	NM_015221	23268	Hs.500771	NM_015221	ENSG00000107554	DNMBP	ARHGEF36|TUBA	dynamin binding protein	protein-coding
575	chr2	15470974	15474533	+	0	NA	intron (NM_015909, intron 35 of 51)	AT_rich|Low_complexity|Low_complexity	228719	NM_015909	51594	Hs.467759	NM_015909	ENSG00000151779	NBAS	ILFS2|NAG|SOPH	neuroblastoma amplified sequence	protein-coding
891	chr8	145925563	145928105	+	0	NA	Intergenic	Intergenic	-15637	NM_001308208	80728	Hs.148988	NM_025251	ENSG00000147799	ARHGAP39	CrGAP|Vilse	Rho GTPase activating protein 39	protein-coding
752	chr19	6521471	6523529	+	0	NA	Intergenic	Intergenic	-8510	NM_003811	8744	Hs.1524	NM_003811	ENSG00000125657	TNFSF9	4-1BB-L|CD137L|TNLG5A	TNF superfamily member 9	protein-coding
119	chr12	51609291	51614588	+	0	NA	promoter-TSS (NR_026893)	promoter-TSS (NR_026893)	-400	NR_147051	5463	Hs.555886	NM_002702	ENSG00000184271	POU6F1	BRN5|MPOU|TCFB1	POU class 6 homeobox 1	protein-coding
658	chr19	10674261	10681987	+	0	NA	intron (NM_079421, intron 2 of 2)	intron (NM_079421, intron 2 of 2)	-1422	NM_023008	65095	Hs.709967	NM_023008	ENSG00000129347	KRI1	-	KRI1 homolog	protein-coding
674	chr16	88864379	88881244	+	0	NA	intron (NM_030928, intron 6 of 9)	intron (NM_030928, intron 6 of 9)	2625	NM_030928	81620	Hs.122908	NM_030928	ENSG00000167513	CDT1	DUP|RIS2	chromatin licensing and DNA replication factor 1	protein-coding
418	chr17	66014099	66018712	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-15313	NM_002266	3838	Hs.594238	NM_002266	ENSG00000182481	KPNA2	IPOA1|QIP2|RCH1|SRP1-alpha|SRP1alpha	karyopherin subunit alpha 2	protein-coding
485	chr5	175604505	175618126	+	0	NA	intron (NR_036494, intron 4 of 25)	MER101-int|LTR|ERV1	14983	NR_036494	643201	Hs.390285	NR_036494	ENSG00000248596	LOC643201	-	centrosomal protein 192kDa pseudogene	pseudo
344	chr14	34334642	34337118	+	0	NA	Intergenic	Ricksha_c|DNA|MuDR	84152	NM_001308103	112399	Hs.135507	NM_022073	ENSG00000129521	EGLN3	HIFP4H3|HIFPH3|PHD3	egl-9 family hypoxia inducible factor 3	protein-coding
327	chr11	45862857	45865922	+	0	NA	Intergenic	L1ME3|LINE|L1	-4280	NM_001127457	1408	Hs.532491	NM_021117	ENSG00000121671	CRY2	HCRY2|PHLL2	cryptochrome circadian regulator 2	protein-coding
934	chr3	47176500	47178745	+	0	NA	intron (NM_014159, intron 1 of 20)	L2a|LINE|L2	27845	NR_146158	29072	Hs.517941	NM_012271	ENSG00000181555	SETD2	HBP231|HIF-1|HIP-1|HSPC069|HYPB|KMT3A|LLS|SET2|p231HBP	SET domain containing 2	protein-coding
526	chr14	23038282	23040767	+	0	NA	intron (NM_001344, intron 2 of 2)	intron (NM_001344, intron 2 of 2)	-13568	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
787	chr1	203250265	203253067	+	0	NA	Intergenic	Intergenic	-4614	NR_117097	100506775	Hs.443859	NR_117097	ENSG00000231507	LINC01353	-	long intergenic non-protein coding RNA 1353	ncRNA
324	chr6	16156937	16159410	+	0	NA	Intergenic	Intergenic	16386	NR_039782	100616269		NR_039782	ENSG00000263712	MIR4639	-	microRNA 4639	ncRNA
222	chr5	131788369	131808931	+	0	NA	intron (NM_001207001, intron 3 of 3)	intron (NM_001207001, intron 3 of 3)	27815	NM_001354925	3659	Hs.436061	NM_002198	ENSG00000125347	IRF1	IRF-1|MAR	interferon regulatory factor 1	protein-coding
602	chr22	23135108	23137061	+	0	NA	Intergenic	AluY|SINE|Alu	-29186	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
655	chr1	9811074	9814567	+	0	NA	intron (NM_001009566, intron 4 of 18)	AluSx|SINE|Alu	61295	NM_001350235	5293	Hs.518451	NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|P110DELTA|PI3K|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
269	chr14	23766661	23781088	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	-1817	NM_001276318	90673	Hs.601513	NM_001276318	ENSG00000235194	PPP1R3E	-	protein phosphatase 1 regulatory subunit 3E	protein-coding
649	chr16	88750967	88757687	+	0	NA	TTS (NR_024399)	TTS (NR_024399)	-1445	NM_178310	333929	Hs.673548	NM_178310	ENSG00000185669	SNAI3	SMUC|SNAIL3|ZNF293|Zfp293	snail family transcriptional repressor 3	protein-coding
75	chr12	56649936	56654417	+	0	NA	promoter-TSS (NM_173595)	promoter-TSS (NM_173595)	-33	NM_173595	283373	Hs.524506	NM_173595	ENSG00000139645	ANKRD52	ANKRD33	ankyrin repeat domain 52	protein-coding
555	chr21	36312116	36322172	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	-56157	NM_001001890	861	Hs.149261	NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	runt related transcription factor 1	protein-coding
839	chrX	109373373	109385444	+	0	NA	intron (NM_001353850, intron 4 of 7)	L1MC4|LINE|L1	54062	NR_039774	100616491		NR_039774	ENSG00000265584	MIR3978	-	microRNA 3978	ncRNA
653	chr3	43495145	43498286	+	0	NA	intron (NM_001346468, intron 11 of 12)	L2a|LINE|L2	-103261	NR_046757	100873954	Hs.600984	NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
170	chr16	57716611	57717882	+	0	NA	intron (NM_001308360, intron 7 of 10)	MER51D|LTR|ERV1	-11467	NM_001289162	84229	Hs.513635	NM_032269	ENSG00000159625	DRC7	C16orf50|CCDC135|CFAP50|FAP50	dynein regulatory complex subunit 7	protein-coding
164	chr1	28652346	28660148	+	0	NA	intron (NM_017638, intron 1 of 2)	AluJr4|SINE|Alu	734	NM_017638	54797	Hs.479911	NM_017638	ENSG00000130772	MED18	SRB5|p28b	mediator complex subunit 18	protein-coding
617	chr3	193795226	193818704	+	0	NA	Intergenic	AluSx|SINE|Alu	-18206	NR_136180	285389	Hs.157102	NR_136179	ENSG00000230102	LINC02028	-	long intergenic non-protein coding RNA 2028	ncRNA
578	chr8	29106085	29108618	+	0	NA	intron (NM_015254, intron 1 of 39)	intron (NM_015254, intron 1 of 39)	13259	NM_015254	23303	Hs.444767	NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
948	chr6	34281976	34297120	+	0	NA	intron (NM_001202470, intron 6 of 8)	L1MC4|LINE|L1	70909	NM_006703	11165	Hs.188882	NM_006703	ENSG00000272325	NUDT3	DIPP|DIPP-1|DIPP1	nudix hydrolase 3	protein-coding
87	chr16	23518583	23523944	+	0	NA	intron (NM_015044, intron 1 of 16)	MIRb|SINE|MIR	552	NM_015044	23062	Hs.460336	NM_015044	ENSG00000103365	GGA2	VEAR	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding
850	chr19	45391696	45397756	+	0	NA	exon (NM_001128916, exon 2 of 10)	exon (NM_001128916, exon 2 of 10)	249	NM_006114	10452	Hs.655909	NM_006114	ENSG00000130204	TOMM40	C19orf1|D19S1177E|PER-EC1|PEREC1|TOM40	translocase of outer mitochondrial membrane 40	protein-coding
358	chr20	56022148	56029474	+	0	NA	Intergenic	Intergenic	-57699	NR_149006	100291105	Hs.638423	NR_149006	ENSG00000218018	LOC100291105	-	uncharacterized LOC100291105	ncRNA
378	chr19	47537911	47540264	+	0	NA	intron (NM_001321086, intron 1 of 7)	intron (NM_001321086, intron 1 of 7)	500	NM_001321086	4861	Hs.79564	NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
84	chr12	111010923	111023714	+	0	NA	intron (NM_139283, intron 1 of 5)	intron (NM_139283, intron 1 of 5)	3746	NR_138550	160760	Hs.13854	NM_139283	ENSG00000196850	PPTC7	TA-PP2C|TAPP2C	PTC7 protein phosphatase homolog	protein-coding
611	chr16	87325924	87362945	+	0	NA	intron (NM_001195124, intron 4 of 6)	G-rich|Low_complexity|Low_complexity	6592	NM_001195125	100506581	Hs.729380	NM_001195124	ENSG00000260456	C16orf95	-	chromosome 16 open reading frame 95	protein-coding
804	chr20	34040482	34046077	+	0	NA	promoter-TSS (NM_001319138)	promoter-TSS (NM_001319138)	56	NM_007186	11190	Hs.443976	NM_007186	ENSG00000126001	CEP250	C-NAP1|CEP2|CNAP1	centrosomal protein 250	protein-coding
428	chr17	4735156	4746472	+	0	NA	intron (NM_001024937, intron 1 of 31)	intron (NM_001024937, intron 1 of 31)	4179	NM_015716	50488	Hs.443417	NM_015716	ENSG00000141503	MINK1	B55|MAP4K6|MINK|YSK2|ZC3	misshapen like kinase 1	protein-coding
520	chr3	40328572	40361660	+	0	NA	intron (NR_033965, intron 1 of 2)	MIRb|SINE|MIR	-6057	NM_005875	10289	Hs.315230	NM_005875	ENSG00000114784	EIF1B	GC20	eukaryotic translation initiation factor 1B	protein-coding
705	chr11	47297540	47300998	+	0	NA	intron (NM_003682, intron 5 of 35)	MER44B|DNA|TcMar-Tigger	-5608	NR_120569	101928943	Hs.664956	NR_120568	ENSG00000256746	LOC101928943	-	uncharacterized LOC101928943	ncRNA
978	chr5	60626448	60629993	+	0	NA	exon (NM_020928, exon 1 of 14)	exon (NM_020928, exon 1 of 14)	120	NM_020928	57688	Hs.744939	NM_020928	ENSG00000130449	ZSWIM6	AFND|NEDMAGA	zinc finger SWIM-type containing 6	protein-coding
200	chr17	38208324	38212488	+	0	NA	intron (NM_001079518, intron 1 of 24)	AluSp|SINE|Alu	483	NM_001079518	9862	Hs.462983	NM_014815	ENSG00000008838	MED24	ARC100|CRSP100|CRSP4|DRIP100|MED5|THRAP4|TRAP100	mediator complex subunit 24	protein-coding
583	chr15	90724525	90737787	+	0	NA	intron (NM_001324030, intron 1 of 13)	AluSg|SINE|Alu	3004	NM_020210	10509	Hs.474935	NM_020210	ENSG00000185033	SEMA4B	SEMAC|SemC	semaphorin 4B	protein-coding
618	chr16	69219695	69223433	+	0	NA	exon (NM_006750, exon 1 of 7)	exon (NM_006750, exon 1 of 7)	514	NM_006750	6645	Hs.461117	NM_006750	ENSG00000168807	SNTB2	D16S2531E|EST25263|SNT2B2|SNT3|SNTL	syntrophin beta 2	protein-coding
751	chr17	47410657	47413622	+	0	NA	intron (NR_135579, intron 1 of 7)	AluSz|SINE|Alu	-26388	NR_110884	102724596	Hs.559253	NR_110882	ENSG00000248714	LOC102724596	-	uncharacterized LOC102724596	ncRNA
70	chr1	43909251	43922793	+	0	NA	TTS (NM_031207)	TTS (NM_031207)	-1707	NR_046744	100873952	Hs.619768	NR_046744	ENSG00000229372	SZT2-AS1	-	SZT2 antisense RNA 1	ncRNA
244	chr2	190433610	190436546	+	0	NA	intron (NM_014585, intron 5 of 7)	intron (NM_014585, intron 5 of 7)	10459	NM_014585	30061	Hs.643005	NM_014585	ENSG00000138449	SLC40A1	FPN1|HFE4|IREG1|MST079|MSTP079|MTP1|SLC11A3	solute carrier family 40 member 1	protein-coding
840	chr20	3385894	3390504	+	0	NA	exon (NM_001009984, exon 1 of 37)	exon (NM_001009984, exon 1 of 37)	110	NM_001009984	25943	Hs.516853	NM_001009984	ENSG00000088854	C20orf194	-	chromosome 20 open reading frame 194	protein-coding
912	chr22	20030063	20036232	+	0	NA	intron (NM_001322141, intron 3 of 8)	AluSp|SINE|Alu	12485	NR_029706	406961		NR_029706	ENSG00000208023	MIR185	MIRN185|miR-185	microRNA 185	ncRNA
838	chr13	52174697	52177143	+	0	NA	intron (NM_052950, intron 1 of 11)	MIRb|SINE|MIR	17436	NM_052950	115825	Hs.46506	NM_052950	ENSG00000139668	WDFY2	PROF|WDF2|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding
667	chr10	80729816	80736169	+	0	NA	intron (NR_015429, intron 3 of 7)	intron (NR_015429, intron 3 of 7)	94213	NR_015429	283050	Hs.309176	NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
256	chr19	49065420	49067759	+	0	NA	intron (NM_177973, intron 1 of 6)	L1ME2z|LINE|L1	11160	NM_177973	6820	Hs.369331	NM_004605	ENSG00000088002	SULT2B1	ARCI14|HSST2	sulfotransferase family 2B member 1	protein-coding
377	chr17	44840771	44844616	+	0	NA	intron (NM_030753, intron 4 of 4)	MIRc|SINE|MIR	53433	NM_030753	7473	Hs.445884	NM_030753	ENSG00000108379	WNT3	INT4|TETAMS	Wnt family member 3	protein-coding
337	chr11	66681260	66683794	+	0	NA	intron (NM_000920, intron 2 of 21)	AluJr|SINE|Alu	-7187	NM_022172	5091	Hs.89890	NM_000920	ENSG00000173599	PC	PCB	pyruvate carboxylase	protein-coding
28	chr13	50507689	50513814	+	0	NA	promoter-TSS (NR_023351)	promoter-TSS (NR_023351)	-114	NR_023351	57213	Hs.44235	NM_020456	ENSG00000123178	SPRYD7	C13orf1|CLLD6	SPRY domain containing 7	protein-coding
613	chr16	2518695	2541492	+	0	NA	intron (NM_020705, intron 1 of 6)	AluSp|SINE|Alu	4946	NM_001199107	57465	Hs.353087	NM_020705	ENSG00000162065	TBC1D24	DFNA65|DFNB86|DOORS|EIEE16|FIME|TLDC6	TBC1 domain family member 24	protein-coding
234	chr7	2993304	2999147	+	0	NA	intron (NM_001324281, intron 3 of 25)	L1ME3E|LINE|L1	87354	NM_001324281	84433	Hs.648101	NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
730	chr6	43060118	43066331	+	0	NA	intron (NM_001270398, intron 1 of 19)	intron (NM_001270398, intron 1 of 19)	18672	NM_001270398	5754	Hs.90572	NM_002821	ENSG00000112655	PTK7	CCK-4|CCK4	protein tyrosine kinase 7 (inactive)	protein-coding
861	chr20	60755479	60763452	+	0	NA	intron (NM_015666, intron 1 of 6)	LTR33|LTR|ERVL	1384	NM_015666	26164	Hs.340636	NM_015666	ENSG00000101181	MTG2	GTPBP5|ObgH1|dJ1005F21.2	mitochondrial ribosome associated GTPase 2	protein-coding
958	chr8	125699489	125701762	+	0	NA	intron (NM_001282971, intron 3 of 14)	(TG)n|Simple_repeat|Simple_repeat	40123	NM_001282971	9788	Hs.336994	NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS1, I-BAR domain containing	protein-coding
268	chr22	38081106	38084207	+	0	NA	intron (NM_024313, intron 1 of 5)	CpG	312	NM_024313	79159	Hs.632778	NM_024313	ENSG00000273899	NOL12	Nop25|dJ37E16.7	nucleolar protein 12	protein-coding
12	chr1	160161314	160165499	+	0	NA	intron (NM_001231, intron 2 of 10)	intron (NM_001231, intron 2 of 10)	3121	NM_001231	844	Hs.632476	NM_001231	ENSG00000143318	CASQ1	CASQ|PDIB1|VMCQA	calsequestrin 1	protein-coding
467	chr1	31534257	31540136	+	0	NA	intron (NM_001020658, intron 1 of 21)	intron (NM_001020658, intron 1 of 21)	1368	NM_001020658	9698	Hs.281707	NM_014676	ENSG00000134644	PUM1	HSPUM|PUMH|PUMH1|PUML1	pumilio RNA binding family member 1	protein-coding
828	chr8	106363362	106370469	+	0	NA	intron (NM_012082, intron 1 of 7)	intron (NM_012082, intron 1 of 7)	35768	NM_012082	23414	Hs.431009	NM_012082	ENSG00000169946	ZFPM2	DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2	zinc finger protein, FOG family member 2	protein-coding
340	chr16	153377	182415	+	0	NA	intron (NM_001077350, intron 4 of 14)	intron (NM_001077350, intron 4 of 14)	20801	NM_001039476	8131	Hs.19699	NM_012075	ENSG00000103148	NPRL3	C16orf35|CGTHBA|FFEVF3|HS-40|MARE|NPR3|RMD11	NPR3 like, GATOR1 complex subunit	protein-coding
273	chr15	22976082	22978145	+	0	NA	intron (NM_001033028, intron 7 of 15)	MER77B|LTR|ERVL	21358	NM_001033028	23191	Hs.26704	NM_014608	ENSG00000273749	CYFIP1	P140SRA-1|SHYC|SRA-1|SRA1	cytoplasmic FMR1 interacting protein 1	protein-coding
851	chr20	5698724	5702446	+	0	NA	Intergenic	LTR33|LTR|ERVL	-30448	NM_152504	149840	Hs.529340	NM_152504	ENSG00000171984	SHLD1	C20orf196|RINN3	shieldin complex subunit 1	protein-coding
663	chr9	3519598	3531716	+	0	NA	intron (NM_134428, intron 1 of 17)	intron (NM_134428, intron 1 of 17)	344	NM_001282116	5991	Hs.136829	NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
771	chr1	206136723	206138757	+	0	NA	promoter-TSS (NM_001287385)	promoter-TSS (NM_001287385)	475	NM_001317901	729533	Hs.339665	NM_001123168	ENSG00000196550	FAM72A	LMPIP|Ugene|p17	family with sequence similarity 72 member A	protein-coding
300	chr1	197643672	197648182	+	0	NA	intron (NM_001195215, intron 3 of 22)	intron (NM_001195215, intron 3 of 22)	98696	NM_001195216	163486	Hs.125056	NM_019049	ENSG00000213047	DENND1B	C1ORF18|C1orf218|FAM31B	DENN domain containing 1B	protein-coding
31	chr19	50963394	50965546	+	0	NA	intron (NM_004533, intron 24 of 27)	AluJo|SINE|Alu	-15264	NM_175063	284361	Hs.448941	NM_175063	ENSG00000161671	EMC10	C19orf63|HSM1|HSS1	ER membrane protein complex subunit 10	protein-coding
333	chr1	65529439	65536570	+	0	NA	intron (NM_001321854, intron 1 of 25)	CpG-1205	425	NM_001321852	3716	Hs.207538	NM_002227	ENSG00000162434	JAK1	JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
66	chr6	53208337	53218308	+	0	NA	5' UTR (NM_001301856, exon 1 of 8)	5' UTR (NM_001301856, exon 1 of 8)	421	NM_001301856	60481	Hs.520189	NM_021814	ENSG00000012660	ELOVL5	HELO1|SCA38|dJ483K16.1	ELOVL fatty acid elongase 5	protein-coding
194	chr4	185453985	185461243	+	0	NA	intron (NR_147158, intron 1 of 2)	MLT2C1|LTR|ERVL	1123	NR_147158	105377585	Hs.519127	NR_147158	ENSG00000271538	LINC02427	-	long intergenic non-protein coding RNA 2427	ncRNA
298	chr22	38572170	38579972	+	0	NA	intron (NM_001349867, intron 1 of 17)	intron (NM_001349867, intron 1 of 17)	1766	NM_003560	8398	Hs.170479	NM_003560	ENSG00000184381	PLA2G6	CaI-PLA2|GVI|INAD1|IPLA2-VIA|NBIA2|NBIA2A|NBIA2B|PARK14|PLA2|PNPLA9|iPLA2|iPLA2beta	phospholipase A2 group VI	protein-coding
616	chr2	202045258	202050877	+	0	NA	intron (NM_001306083, intron 1 of 5)	intron (NM_001306083, intron 1 of 5)	446	NM_032974	843	Hs.5353	NM_001230	ENSG00000003400	CASP10	ALPS2|FLICE2|MCH4	caspase 10	protein-coding
801	chr22	23022073	23033720	+	0	NA	Intergenic	Intergenic	39114	NM_199127	91227	Hs.450000	NM_080839	ENSG00000100121	GGTLC2	GGTL4	gamma-glutamyltransferase light chain 2	protein-coding
362	chr3	128800304	128801867	+	0	NA	Intergenic	Intergenic	21475	NM_000174	2815	Hs.1144	NM_000174	ENSG00000169704	GP9	CD42a|GPIX	glycoprotein IX platelet	protein-coding
91	chr9	98822674	98824391	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-4589	NR_033838	158435	Hs.652615	NR_033838		LOC158435	-	uncharacterized LOC158435	ncRNA
676	chr1	160959650	160961210	+	0	NA	Intergenic	Intergenic	30703	NM_016946	50848	Hs.517293	NM_016946	ENSG00000158769	F11R	CD321|JAM|JAM1|JAMA|JCAM|KAT|PAM-1	F11 receptor	protein-coding
775	chr22	23019061	23020882	+	0	NA	Intergenic	Intergenic	31189	NM_199127	91227	Hs.450000	NM_080839	ENSG00000100121	GGTLC2	GGTL4	gamma-glutamyltransferase light chain 2	protein-coding
39	chr9	136211639	136230356	+	0	NA	intron (NM_001280787, intron 3 of 7)	MER102c|DNA|hAT-Charlie	2364	NM_001280787	6834	Hs.512464	NM_003172	ENSG00000148290	SURF1	CMT4K	SURF1, cytochrome c oxidase assembly factor	protein-coding
570	chr12	10825075	10828580	+	0	NA	promoter-TSS (NM_018423)	promoter-TSS (NM_018423)	64	NM_018423	55359	Hs.24979	NM_018423	ENSG00000060140	STYK1	NOK|SuRTK106	serine/threonine/tyrosine kinase 1	protein-coding
907	chr6	32803484	32807648	+	0	NA	exon (NM_018833, exon 2 of 12)	exon (NM_018833, exon 2 of 12)	981	NM_000544	6891	Hs.502	NM_000544	ENSG00000204267	TAP2	ABC18|ABCB3|APT2|D6S217E|PSF-2|PSF2|RING11	transporter 2, ATP binding cassette subfamily B member	protein-coding
55	chr16	14171111	14172820	+	0	NA	intron (NM_014048, intron 1 of 16)	L2b|LINE|L2	6794	NM_001308142	57496	Hs.49143	NM_014048	ENSG00000186260	MKL2	MRTF-B|MRTFB|NPD001	MKL1/myocardin like 2	protein-coding
247	chr1	154953074	154969311	+	0	NA	exon (NM_001184892, exon 3 of 3)	exon (NM_001184892, exon 3 of 3)	-4870	NM_018655	55891	Hs.272399	NM_018655	ENSG00000163352	LENEP	LEP503	lens epithelial protein	protein-coding
187	chr6	43575068	43577328	+	0	NA	intron (NM_001291970, intron 9 of 10)	intron (NM_001291970, intron 9 of 10)	18892	NM_001286216	54676	Hs.485449	NM_019096	ENSG00000172432	GTPBP2	-	GTP binding protein 2	protein-coding
685	chr19	40500734	40505335	+	0	NA	promoter-TSS (NM_001297763)	promoter-TSS (NM_001297763)	91	NM_001297763	339327	Hs.125008	NM_178544	ENSG00000187187	ZNF546	ZNF49	zinc finger protein 546	protein-coding
657	chr10	13441382	13461824	+	0	NA	Intergenic	MER41A|LTR|ERV1	-61305	NM_001195602	22929	Hs.124027	NM_012247	ENSG00000086475	SEPHS1	SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding
465	chr11	117784372	117788214	+	0	NA	intron (NM_001206789, intron 2 of 11)	MIR3|SINE|MIR	13875	NM_001206790	84000	Hs.266308	NM_032046	ENSG00000137747	TMPRSS13	MSP|MSPL|MSPS|TMPRSS11	transmembrane serine protease 13	protein-coding
274	chr9	33288025	33299458	+	0	NA	intron (NM_001318758, intron 1 of 23)	intron (NM_001318758, intron 1 of 23)	3326	NM_001318758	4799	Hs.413074	NM_002504	ENSG00000086102	NFX1	NFX2|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding
306	chr1	16209106	16214881	+	0	NA	intron (NM_015001, intron 3 of 14)	intron (NM_015001, intron 3 of 14)	14349	NR_039973								
401	chr4	48522391	48534624	+	0	NA	intron (NM_015030, intron 53 of 63)	MLT1L|LTR|ERVL-MaLR	36238	NM_175619	326340	Hs.276457	NM_175619	ENSG00000182223	ZAR1	Z3CXXC6	zygote arrest 1	protein-coding
666	chr21	38579108	38583131	+	0	NA	intron (NR_026719, intron 2 of 2)	intron (NR_026719, intron 2 of 2)	315	NR_026719	257203	Hs.505159	NM_148675	ENSG00000230366	DSCR9	NCRNA00038	Down syndrome critical region 9 (non-protein coding)	ncRNA
888	chr21	45612955	45618179	+	0	NA	Intergenic	Intergenic	-35822	NR_146631	105377138		NR_146631		LINC01678	-	long intergenic non-protein coding RNA 1678	ncRNA
49	chr19	46261189	46284863	+	0	NA	promoter-TSS (NM_175875)	promoter-TSS (NM_175875)	-529	NM_175875	147912	Hs.43314	NM_175875	ENSG00000177045	SIX5	BOR2|DMAHP	SIX homeobox 5	protein-coding
99	chr1	236685170	236689800	+	0	NA	non-coding (NR_034040, exon 1 of 1)	non-coding (NR_034040, exon 1 of 1)	323	NR_034040	100287902	Hs.677376	NR_034040	ENSG00000223776	LGALS8-AS1	-	LGALS8 antisense RNA 1	ncRNA
449	chr7	129006568	129008967	+	0	NA	promoter-TSS (NM_001130723)	promoter-TSS (NM_001130723)	-197	NM_001130723	23382	Hs.600789	NM_015328	ENSG00000158467	AHCYL2	ADOHCYASE3|IRBIT2	adenosylhomocysteinase like 2	protein-coding
812	chr1	161589318	161597839	+	0	NA	3' UTR (NM_001244753, exon 5 of 5)	3' UTR (NM_001244753, exon 5 of 5)	7259	NM_001271037	2215	Hs.372679	NM_000570	ENSG00000162747	FCGR3B	CD16|CD16A|CD16b|FCG3|FCGR3|FCGR3A|FCR-10|FCRIII|FCRIIIb	Fc fragment of IgG receptor IIIb	protein-coding
542	chr22	39703655	39718348	+	0	NA	TTS (NR_000027)	TTS (NR_000027)	311	NR_000027	116937		NR_000027	ENSG00000209482	SNORD83A	RNU83A|U83A	small nucleolar RNA, C/D box 83A	snoRNA
131	chr17	44342948	44346082	+	0	NA	Intergenic	CpG	-27982	NM_014834	9884	Hs.579108	NM_014834	ENSG00000176681	LRRC37A	LRRC37	leucine rich repeat containing 37A	protein-coding
58	chr11	68187949	68190258	+	0	NA	intron (NM_001291902, intron 13 of 22)	intron (NM_001291902, intron 13 of 22)	-39083	NM_001352359	55291	Hs.503022	NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
824	chr5	169704306	169708346	+	0	NA	intron (NM_005565, intron 3 of 20)	intron (NM_005565, intron 3 of 20)	18520	NM_005565	3937	Hs.304475	NM_005565	ENSG00000043462	LCP2	SLP-76|SLP76	lymphocyte cytosolic protein 2	protein-coding
209	chr8	144328152	144331611	+	0	NA	5' UTR (NM_001271156, exon 1 of 3)	5' UTR (NM_001271156, exon 1 of 3)	783	NM_173832	286128	Hs.668016	NM_173832	ENSG00000181638	ZFP41	ZNF753|zfp-41	ZFP41 zinc finger protein	protein-coding
835	chr19	50365800	50383352	+	0	NA	intron (NM_032375, intron 4 of 4)	MIRc|SINE|MIR	-3754	NM_007254	11284	Hs.78016	NM_007254	ENSG00000039650	PNKP	AOA4|EIEE10|MCSZ|PNK	polynucleotide kinase 3'-phosphatase	protein-coding
792	chr13	113287081	113303867	+	0	NA	Intergenic	Intergenic	-5884	NM_207440	400165	Hs.591213	NM_207440		ATP11AUN	C13orf35|SMABLO1	ATP11A upstream neighbor	protein-coding
146	chr7	4774989	4781199	+	0	NA	intron (NM_001037165, intron 1 of 8)	intron (NM_001037165, intron 1 of 8)	-37168	NM_014855	9907	Hs.558440	NM_014855	ENSG00000242802	AP5Z1	KIAA0415|SPG48|zeta	adaptor related protein complex 5 subunit zeta 1	protein-coding
204	chr21	35333910	35371656	+	0	NA	Intergenic	MER58B|DNA|hAT-Charlie	4100	NR_134561	101928126	Hs.436879	NR_134561		LOC101928126	-	uncharacterized LOC101928126	ncRNA
295	chr8	145708404	145710351	+	0	NA	intron (NM_032902, intron 2 of 12)	intron (NM_032902, intron 2 of 12)	5643	NM_001329444	84988	Hs.521937	NM_032902	ENSG00000160972	PPP1R16A	MYPT3	protein phosphatase 1 regulatory subunit 16A	protein-coding
625	chr9	14477932	14480920	+	0	NA	Intergenic	Intergenic	-80444	NM_001190738	4781	Hs.644095	NM_005596	ENSG00000147862	NFIB	CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3	nuclear factor I B	protein-coding
577	chr17	45398142	45402775	+	0	NA	promoter-TSS (NM_001195192)	promoter-TSS (NM_001195192)	521	NR_110881	102724508	Hs.661005	NR_110880	ENSG00000263293	THCAT158	-	thyroid cancer-associated transcript 158	ncRNA
232	chr6	17711309	17717495	+	0	NA	Intergenic	Intergenic	7128	NR_134618	105374952	Hs.718703	NR_134616	ENSG00000272269	LOC105374952	-	uncharacterized LOC105374952	ncRNA
552	chr22	20743882	20750650	+	0	NA	Intergenic	AluJb|SINE|Alu	-1139	NR_046282	7625	Hs.517418	NM_003426	ENSG00000185252	ZNF74	COS52|ZFP520|ZNF520|hZNF7	zinc finger protein 74	protein-coding
652	chr3	176823525	176829761	+	0	NA	intron (NM_001321194, intron 1 of 16)	intron (NM_001321194, intron 1 of 16)	87629	NM_001321193	79718	Hs.714201	NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	transducin beta like 1 X-linked receptor 1	protein-coding
638	chr15	65836682	65850426	+	0	NA	intron (NM_016395, intron 1 of 10)	intron (NM_016395, intron 1 of 10)	20727	NM_016395	51495	Hs.512973	NM_016395	ENSG00000074696	HACD3	B-IND1|BIND1|HSPC121|PTPLAD1	3-hydroxyacyl-CoA dehydratase 3	protein-coding
498	chr5	170919280	170924190	+	0	NA	Intergenic	Intergenic	75068	NM_003862	8817	Hs.87191	NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
433	chr19	18107366	18114669	+	0	NA	promoter-TSS (NM_001025604)	promoter-TSS (NM_001025604)	-924	NM_001025604	27106	Hs.515249	NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
927	chr12	27173766	27177323	+	0	NA	promoter-TSS (NM_004264)	promoter-TSS (NM_004264)	89	NM_004264	9412	Hs.286145	NM_004264	ENSG00000152944	MED21	SRB7|SURB7|hSrb7	mediator complex subunit 21	protein-coding
770	chr6	17743789	17746193	+	0	NA	Intergenic	LTR12C|LTR|ERV1	37717	NR_134618	105374952	Hs.718703	NR_134616	ENSG00000272269	LOC105374952	-	uncharacterized LOC105374952	ncRNA
73	chr3	16075338	16076984	+	0	NA	Intergenic	LTR16A|LTR|ERVL	-139668	NM_001319051	117248	Hs.411308	NM_054110	ENSG00000131386	GALNT15	GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15	polypeptide N-acetylgalactosaminyltransferase 15	protein-coding
909	chr14	102391940	102396950	+	0	NA	TTS (NM_001352913)	TTS (NM_001352913)	-36420	NM_001376	1778	Hs.614080	NM_001376	ENSG00000197102	DYNC1H1	CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
780	chr21	35916486	35920508	+	0	NA	intron (NM_004414, intron 1 of 3)	intron (NM_004414, intron 1 of 3)	-19189	NM_203418	1827	Hs.282326	NM_004414	ENSG00000159200	RCAN1	ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding
463	chr1	26494674	26499359	+	0	NA	intron (NM_015871, intron 2 of 2)	intron (NM_015871, intron 2 of 2)	628	NM_015871	51042	Hs.477273	NM_015871	ENSG00000142684	ZNF593	ZT86	zinc finger protein 593	protein-coding
760	chr11	65080713	65085629	+	0	NA	intron (NM_006779, intron 1 of 1)	CpG	882	NM_006779	10435	Hs.343380	NM_006779	ENSG00000149798	CDC42EP2	BORG1|CEP2	CDC42 effector protein 2	protein-coding
829	chr10	7375145	7382040	+	0	NA	intron (NM_001018039, intron 4 of 20)	FRAM|SINE|Alu	72711	NM_001018039	57713	Hs.407983	NM_001018039	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
502	chr16	85377727	85381210	+	0	NA	Intergenic	Intergenic	-39537	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
160	chr1	161408677	161412065	+	0	NA	Intergenic	CpG	-64834	NM_001136219	2212	Hs.352642	NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|IGFR2	Fc fragment of IgG receptor IIa	protein-coding
603	chrX	48429737	48436523	+	0	NA	intron (NM_006743, intron 1 of 6)	CpG	389	NM_006743	5935	Hs.301404	NM_006743	ENSG00000102317	RBM3	IS1-RNPL|RNPL	RNA binding motif protein 3	protein-coding
916	chr6	13270243	13278536	+	0	NA	TTS (NR_134872)	TTS (NR_134872)	9285	NR_134859	100130357	Hs.484678	NM_001242698		LOC100130357	-	uncharacterized LOC100130357	protein-coding
29	chr1	19494345	19498961	+	0	NA	intron (NM_020765, intron 26 of 105)	intron (NM_020765, intron 26 of 105)	40093	NM_020765	23352	Hs.148078	NM_020765	ENSG00000127481	UBR4	RBAF600|ZUBR1|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding
519	chr8	41642652	41660227	+	0	NA	intron (NM_001142446, intron 1 of 42)	intron (NM_001142446, intron 1 of 42)	3701	NM_020475	286	Hs.654438	NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2	ankyrin 1	protein-coding
426	chr19	54270845	54273356	+	0	NA	Intergenic	AluJo|SINE|Alu	6502	NR_030222	574500		NR_030222	ENSG00000284362	MIR519A2	MIRN519A-2|MIRN519A2|mir-519a-2	microRNA 519a-2	ncRNA
13	chr1	32679864	32683227	+	0	NA	TTS (NM_019118)	TTS (NM_019118)	-5640	NM_003757	8668	Hs.530096	NM_003757	ENSG00000084623	EIF3I	EIF3S2|PRO2242|TRIP-1|TRIP1|eIF3-beta|eIF3-p36	eukaryotic translation initiation factor 3 subunit I	protein-coding
46	chr7	44833694	44840026	+	0	NA	intron (NM_021130, intron 1 of 4)	intron (NM_021130, intron 1 of 4)	625	NM_001300981	5478	Hs.356331	NM_021130	ENSG00000196262	PPIA	CYPA|CYPH|HEL-S-69p	peptidylprolyl isomerase A	protein-coding
931	chr16	31127597	31130818	+	0	NA	exon (NM_032188, exon 1 of 11)	exon (NM_032188, exon 1 of 11)	222	NM_032188	84148	Hs.533803	NM_032188	ENSG00000103510	KAT8	MOF|MYST1|ZC2HC8|hMOF	lysine acetyltransferase 8	protein-coding
85	chr5	171430202	171436766	+	0	NA	exon (NM_033645, exon 1 of 12)	exon (NM_033645, exon 1 of 12)	393	NM_033644	23291	Hs.484138	NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos	F-box and WD repeat domain containing 11	protein-coding
963	chr17	72458095	72462137	+	0	NA	Intergenic	Intergenic	-2396	NM_001330457	11314	Hs.9688	NM_007261	ENSG00000167851	CD300A	CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60	CD300a molecule	protein-coding
394	chr12	124975229	124979707	+	0	NA	intron (NM_001077261, intron 3 of 47)	intron (NM_001077261, intron 3 of 47)	74542	NM_001206654	9612	Hs.137510	NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
456	chr4	37976418	37980560	+	0	NA	intron (NM_015173, intron 2 of 19)	intron (NM_015173, intron 2 of 19)	16433	NM_006607	10744	Hs.668806	NM_006607	ENSG00000250254	PTTG2	-	pituitary tumor-transforming 2	protein-coding
34	chr11	76152628	76158831	+	0	NA	promoter-TSS (NM_001300943)	promoter-TSS (NM_001300943)	-340	NM_001300944	56946	Hs.352588	NM_020193	ENSG00000158636	EMSY	C11orf30|GL002	EMSY, BRCA2 interacting transcriptional repressor	protein-coding
894	chr7	129647286	129652340	+	0	NA	Intergenic	AluJr|SINE|Alu	41478	NM_016478	51530	Hs.194157	NM_016478	ENSG00000091732	ZC3HC1	HSPC216|NIPA	zinc finger C3HC-type containing 1	protein-coding
454	chr4	170578043	170589659	+	0	NA	intron (NM_001243374, intron 1 of 11)	X7B_LINE|LINE|CR1	2638	NM_001243374	1182	Hs.481186	NM_001829	ENSG00000109572	CLCN3	CLC3|ClC-3	chloride voltage-gated channel 3	protein-coding
339	chr9	100826063	100829828	+	0	NA	intron (NM_018946, intron 2 of 5)	intron (NM_018946, intron 2 of 5)	8986	NM_018946	54187	Hs.522310	NM_018946	ENSG00000095380	NANS	HEL-S-100|SAS|SEMDCG|SEMDG	N-acetylneuraminate synthase	protein-coding
924	chr13	48804551	48812398	+	0	NA	intron (NM_021999, intron 1 of 5)	intron (NM_021999, intron 1 of 5)	1200	NM_021999	9445	Hs.643683	NM_021999	ENSG00000136156	ITM2B	ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2	integral membrane protein 2B	protein-coding
936	chr1	109815454	109828549	+	0	NA	TTS (NM_001350238)	TTS (NM_001350238)	3765	NM_001350237	84722	Hs.405925	NM_032636	ENSG00000134222	PSRC1	DDA3|FP3214	proline and serine rich coiled-coil 1	protein-coding
796	chr15	50975708	50981879	+	0	NA	non-coding (NR_149153, exon 1 of 38)	non-coding (NR_149153, exon 1 of 38)	219	NM_001301212	54822	Hs.512894	NM_017672	ENSG00000092439	TRPM7	ALSPDC|CHAK|CHAK1|LTRPC7|LTrpC-7|TRP-PLIK	transient receptor potential cation channel subfamily M member 7	protein-coding
48	chr20	33286527	33308092	+	0	NA	exon (NM_021202, exon 4 of 5)	exon (NM_021202, exon 4 of 5)	4763	NM_001329431	58476	Hs.516994	NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PIG-U|PIGU|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
165	chr12	120092119	120129170	+	0	NA	intron (NM_006253, intron 2 of 6)	MIR3|SINE|MIR	4883	NM_006253	5564	Hs.741184	NM_006253	ENSG00000111725	PRKAB1	AMPK|HAMPKb	protein kinase AMP-activated non-catalytic subunit beta 1	protein-coding
727	chr22	22420808	22426645	+	0	NA	Intergenic	Intergenic	-25394	NR_135291	649179	Hs.553939	NR_135291	ENSG00000197549	PRAMENP	PRAMEF24P|PRAMEL	PRAME N-terminal-like, pseudogene	pseudo
523	chr16	81352044	81355885	+	0	NA	intron (NM_022041, intron 1 of 10)	intron (NM_022041, intron 1 of 10)	5393	NM_022041	8139	Hs.112569	NM_022041	ENSG00000261609	GAN	GAN1|KLHL16	gigaxonin	protein-coding
872	chr21	43883019	43886744	+	0	NA	Intergenic	AluJo|SINE|Alu	31583	NM_001286506	89765	Hs.661069	NM_080860	ENSG00000160188	RSPH1	CT79|RSP44|RSPH10A|TSA2|TSGA2	radial spoke head 1 homolog	protein-coding
171	chr11	66934107	66937084	+	0	NA	intron (NM_012308, intron 2 of 20)	intron (NM_012308, intron 2 of 20)	48855	NR_027473	22992	Hs.124147	NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
646	chr9	127580034	127582871	+	0	NA	Intergenic	Intergenic	18299	NM_001282715	169611	Hs.357004	NM_182487	ENSG00000185585	OLFML2A	PRO34319	olfactomedin like 2A	protein-coding
172	chr19	38734104	38736352	+	0	NA	Intergenic	AluSg7|SINE|Alu	12003	NM_033256	94274	Hs.631569	NM_033256	ENSG00000167641	PPP1R14A	CPI-17|CPI17|PPP1INL	protein phosphatase 1 regulatory inhibitor subunit 14A	protein-coding
994	chr22	23111587	23118652	+	0	NA	Intergenic	Intergenic	-50151	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
4	chr3	176676834	176679516	+	0	NA	Intergenic	Tigger15a|DNA|TcMar-Tigger	-143386	NR_110819	101928684	Hs.639352	NR_110819	ENSG00000228308	LINC01209	-	long intergenic non-protein coding RNA 1209	ncRNA
541	chr6	27091486	27118639	+	0	NA	Intergenic	MER67C|LTR|ERV1	-2026	NM_003495	8294	Hs.248172	NM_003495	ENSG00000276180	HIST1H4I	H4/m|H4FM|H4M	histone cluster 1 H4 family member i	protein-coding
141	chr21	33257026	33258386	+	0	NA	intron (NM_014586, intron 1 of 10)	intron (NM_014586, intron 1 of 10)	12078	NM_014586	30811	Hs.109437	NM_014586	ENSG00000142149	HUNK	-	hormonally up-regulated Neu-associated kinase	protein-coding
885	chr2	122185609	122189290	+	0	NA	intron (NM_001142274, intron 20 of 37)	intron (NM_001142274, intron 20 of 37)	-101007	NR_023343	100151683	Hs.689638	NR_023343	ENSG00000264229	RNU4ATAC	MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC	RNA, U4atac small nuclear (U12-dependent splicing)	snRNA
291	chr19	35772608	35775123	+	0	NA	intron (NM_021175, intron 1 of 2)	AluSx1|SINE|Alu	616	NM_021175	57817	Hs.8821	NM_021175	ENSG00000105697	HAMP	HEPC|HFE2B|LEAP1|PLTR	hepcidin antimicrobial peptide	protein-coding
905	chr1	15865963	15875020	+	0	NA	intron (NM_001287811, intron 3 of 13)	L2a|LINE|L2	1830	NR_135613	107397391		NR_135613	ENSG00000251866	SCARNA21B	-	small Cajal body-specific RNA 21B	ncRNA
219	chr19	17528191	17532926	+	0	NA	promoter-TSS (NM_138401)	promoter-TSS (NM_138401)	-98	NM_138401	93343	Hs.515243	NM_138401	ENSG00000141971	MVB12A	CFBP|FAM125A	multivesicular body subunit 12A	protein-coding
785	chr11	65458762	65461672	+	0	NA	Intergenic	Intergenic	-19256	NM_006388	10524	Hs.397010	NM_006388	ENSG00000172977	KAT5	ESA1|HTATIP|HTATIP1|PLIP|TIP|TIP60|ZC2HC5|cPLA2	lysine acetyltransferase 5	protein-coding
249	chr17	40970650	40973140	+	0	NA	intron (NM_003766, intron 3 of 11)	intron (NM_003766, intron 3 of 11)	4002	NM_001313999	8678	Hs.716464	NM_003766	ENSG00000126581	BECN1	ATG6|VPS30|beclin1	beclin 1	protein-coding
510	chr19	38734104	38736352	+	0	NA	Intergenic	AluSg7|SINE|Alu	12003	NM_033256	94274	Hs.631569	NM_033256	ENSG00000167641	PPP1R14A	CPI-17|CPI17|PPP1INL	protein phosphatase 1 regulatory inhibitor subunit 14A	protein-coding
945	chr22	22960720	22963517	+	0	NA	Intergenic	Charlie6|DNA|hAT-Charlie	24894	NR_024591	25812	Hs.367764	NR_024591		POM121L1P	POM121L1	POM121 transmembrane nucleoporin like 1, pseudogene	pseudo
508	chr12	48356663	48358208	+	0	NA	5' UTR (NM_001143843, exon 1 of 8)	5' UTR (NM_001143843, exon 1 of 8)	105	NM_001143841	79022	Hs.596726	NM_024056	ENSG00000134291	TMEM106C	-	transmembrane protein 106C	protein-coding
95	chrX	37467691	37477767	+	0	NA	intron (NM_001170331, intron 1 of 4)	L1ME3|LINE|L1	41907	NM_001170331	347404	Hs.521932	NM_198511	ENSG00000147036	LANCL3	-	LanC like 3	protein-coding
279	chr7	140184773	140189959	+	0	NA	Intergenic	AluSc8|SINE|Alu	-7997	NM_001145125	23608	Hs.744883	NM_013446	ENSG00000133606	MKRN1	RNF61	makorin ring finger protein 1	protein-coding
763	chr15	93372903	93377999	+	0	NA	Intergenic	Intergenic	36737	NR_033769	728619	Hs.684129	NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
235	chr19	48392784	48397525	+	0	NA	Intergenic	Intergenic	-5500	NM_003167	6822	Hs.515835	NM_003167	ENSG00000105398	SULT2A1	DHEA-ST|DHEAS|HST|ST2|ST2A1|ST2A3|STD|hSTa	sulfotransferase family 2A member 1	protein-coding
776	chr4	1239043	1245613	+	0	NA	promoter-TSS (NR_033339)	promoter-TSS (NR_033339)	580	NM_001012614	1487	Hs.208597	NM_001328	ENSG00000159692	CTBP1	BARS|HADDTS	C-terminal binding protein 1	protein-coding
855	chr1	226084119	226088331	+	0	NA	Intergenic	Intergenic	-9379	NM_020997	10637	Hs.656214	NM_020997	ENSG00000243709	LEFTY1	LEFTB|LEFTYB	left-right determination factor 1	protein-coding
890	chr21	35132903	35135576	+	0	NA	exon (NM_001331012, exon 9 of 29)	exon (NM_001331012, exon 9 of 29)	119455	NM_003024	6453	Hs.90221	NM_003024	ENSG00000205726	ITSN1	ITSN|SH3D1A|SH3P17	intersectin 1	protein-coding
387	chr22	20957697	20960036	+	0	NA	Intergenic	Intergenic	-84977	NR_024592	266697	Hs.558711	NR_024592		POM121L4P	-	POM121 transmembrane nucleoporin like 4, pseudogene	pseudo
473	chr11	111893394	111898397	+	0	NA	5' UTR (NM_001931, exon 1 of 14)	5' UTR (NM_001931, exon 1 of 14)	357	NM_001931	1737	Hs.335551	NM_001931	ENSG00000150768	DLAT	DLTA|PDC-E2|PDCE2	dihydrolipoamide S-acetyltransferase	protein-coding
740	chr19	49118620	49129733	+	0	NA	intron (NM_001243876, intron 2 of 5)	AluSx|SINE|Alu	1386	NM_001204159	56848	Hs.528006	NM_020126	ENSG00000063176	SPHK2	SK 2|SK-2|SPK 2|SPK-2	sphingosine kinase 2	protein-coding
468	chr19	11491877	11496676	+	0	NA	intron (NM_000121, intron 1 of 7)	CpG-12948	742	NR_033663	2057	Hs.631624	NM_000121	ENSG00000187266	EPOR	EPO-R	erythropoietin receptor	protein-coding
691	chr2	200764875	200789114	+	0	NA	intron (NM_153689, intron 1 of 1)	intron (NM_153689, intron 1 of 1)	1015	NM_153689	205327	Hs.154494	NM_153689	ENSG00000178074	C2orf69	-	chromosome 2 open reading frame 69	protein-coding
582	chr7	22684346	22689533	+	0	NA	Intergenic	MLT1D-int|LTR|ERVL-MaLR	18213	NR_122075	401312	Hs.583393	NR_122075	ENSG00000238033	LOC401312	-	uncharacterized LOC401312	ncRNA
175	chr11	108067323	108072507	+	0	NA	intron (NM_001321307, intron 1 of 17)	LTR27B|LTR|ERV1	23450	NM_002519	4863	Hs.171061	NM_002519	ENSG00000149308	NPAT	E14|E14/NPAT|p220	nuclear protein, coactivator of histone transcription	protein-coding
151	chr7	4651890	4653948	+	0	NA	Intergenic	Intergenic	-69011	NM_001037165	221937	Hs.487393	NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
769	chr8	144448123	144453644	+	0	NA	promoter-TSS (NM_052924)	promoter-TSS (NM_052924)	-78	NR_026785	78998	Hs.245886	NM_024035	ENSG00000254389	RHPN1-AS1	C8orf51	RHPN1 antisense RNA 1 (head to head)	ncRNA
283	chr14	31340999	31347005	+	0	NA	5' UTR (NM_001135058, exon 1 of 11)	5' UTR (NM_001135058, exon 1 of 11)	261	NM_001135058	1690	Hs.21016	NM_004086	ENSG00000100473	COCH	COCH-5B2|COCH5B2|DFNA9	cochlin	protein-coding
999	chr12	123318544	123322746	+	0	NA	intron (NM_003959, intron 1 of 31)	CpG	660	NM_003959	9026	Hs.524815	NM_003959	ENSG00000130787	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
460	chr19	38800267	38813663	+	0	NA	promoter-TSS (NM_001145461)	promoter-TSS (NM_001145461)	-359	NM_001145463	90522	Hs.280741	NM_033557	ENSG00000167645	YIF1B	FinGER8	Yip1 interacting factor homolog B, membrane trafficking protein	protein-coding
368	chr19	51303963	51311386	+	0	NA	intron (NM_001290149, intron 1 of 5)	CpG	137	NM_032712	84798	Hs.256301	NM_032712	ENSG00000167747	C19orf48	-	chromosome 19 open reading frame 48	protein-coding
205	chr2	68382239	68387863	+	0	NA	promoter-TSS (NM_138458)	promoter-TSS (NM_138458)	89	NR_138146	56902	Hs.262858	NM_020143	ENSG00000115946	PNO1	KHRBP1|RRP20	partner of NOB1 homolog	protein-coding
957	chr16	84757295	84777845	+	0	NA	intron (NR_073577, intron 2 of 11)	L1ME3C|LINE|L1	34015	NM_005153	9100	Hs.136778	NM_005153	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
704	chrX	134164394	134168348	+	0	NA	promoter-TSS (NM_001078171)	promoter-TSS (NM_001078171)	38	NM_001078171	8933	Hs.522789	NM_003928	ENSG00000134590	RTL8C	CXX1|FAM127A|MAR8C|MART8C|Mar8|Mart8|SIRH5	retrotransposon Gag like 8C	protein-coding
139	chr20	62660963	62700406	+	0	NA	exon (NM_018419, exon 1 of 2)	exon (NM_018419, exon 1 of 2)	295	NM_018419	54345	Hs.8619	NM_018419	ENSG00000203883	SOX18	HLTRS|HLTS	SRY-box 18	protein-coding
880	chr19	47548652	47553392	+	0	NA	intron (NM_017854, intron 1 of 2)	AluJo|SINE|Alu	860	NM_017854	54958	Hs.105606	NM_017854	ENSG00000130748	TMEM160	-	transmembrane protein 160	protein-coding
987	chr3	4840908	4882643	+	0	NA	intron (NM_001168272, intron 59 of 60)	intron (NM_001168272, intron 59 of 60)	-68501	NR_004428	100126791	Hs.663059	NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript (non-protein coding)	ncRNA
458	chr17	44855670	44861016	+	0	NA	intron (NM_030753, intron 1 of 4)	AluSx|SINE|Alu	37783	NM_030753	7473	Hs.445884	NM_030753	ENSG00000108379	WNT3	INT4|TETAMS	Wnt family member 3	protein-coding
921	chr12	110367348	110370526	+	0	NA	3' UTR (NM_001135213, exon 19 of 19)	3' UTR (NM_001135213, exon 19 of 19)	30614	NM_032300	84260	Hs.410924	NM_032300	ENSG00000139437	TCHP	TpMs	trichoplein keratin filament binding	protein-coding
677	chr1	156304900	156310187	+	0	NA	promoter-TSS (NR_130913)	promoter-TSS (NR_130913)	438	NM_144627	128229	Hs.534539	NM_144627	ENSG00000163467	TSACC	C1orf182|SIP|SSTK-IP	TSSK6 activating cochaperone	protein-coding
567	chr2	64453784	64456936	+	0	NA	promoter-TSS (NR_120420)	promoter-TSS (NR_120420)	-175	NR_120420	100507006	Hs.442789	NR_120420		LOC100507006	-	uncharacterized LOC100507006	ncRNA
17	chr6	15724503	15726115	+	0	NA	Intergenic	MIR|SINE|MIR	-62020	NR_036448	84062	Hs.571148	NM_032122	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
686	chr16	1398383	1403884	+	0	NA	promoter-TSS (NM_032520)	promoter-TSS (NM_032520)	740	NM_001001410	115939	Hs.134846	NM_001001410	ENSG00000007520	TSR3	C16orf42	TSR3, acp transferase ribosome maturation factor	protein-coding
904	chr9	139007425	139013547	+	0	NA	promoter-TSS (NM_001256526)	promoter-TSS (NM_001256526)	-209	NM_001256526	90120	Hs.287411	NM_152833	ENSG00000238227	TMEM250	C9orf69	transmembrane protein 250	protein-coding
633	chr17	46100314	46105226	+	0	NA	TTS (NM_016429)	TTS (NM_016429)	11843	NR_029687	406943		NR_029687	ENSG00000207947	MIR152	MIRN152|mir-152	microRNA 152	ncRNA
102	chr3	128112933	128115309	+	0	NA	intron (NM_021937, intron 6 of 6)	intron (NM_021937, intron 6 of 6)	-68316	NR_037890	285224	Hs.683815	NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	ncRNA
576	chr1	27053375	27055872	+	0	NA	intron (NM_139135, intron 1 of 19)	intron (NM_139135, intron 1 of 19)	32099	NM_139135	8289	Hs.468972	NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT-rich interaction domain 1A	protein-coding
150	chr1	206843228	206850328	+	0	NA	Intergenic	Intergenic	-11587	NM_004759	9261	Hs.643566	NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	mitogen-activated protein kinase-activated protein kinase 2	protein-coding
322	chr14	73788953	73792676	+	0	NA	intron (NM_001005743, intron 4 of 12)	LTR48|LTR|ERV1	-78105	NR_135248	101928123	Hs.660593	NR_135248		LOC101928123	-	uncharacterized LOC101928123	ncRNA
797	chr10	74215135	74216684	+	0	NA	intron (NM_001195519, intron 3 of 6)	intron (NM_001195519, intron 3 of 6)	67835	NM_001195519	10367	Hs.524367	NM_006077	ENSG00000107745	MICU1	CALC|CBARA1|EFHA3|MPXPS	mitochondrial calcium uptake 1	protein-coding
455	chr15	65041675	65043309	+	0	NA	intron (NR_138363, intron 3 of 7)	intron (NR_138363, intron 3 of 7)	10924	NR_138364	348093	Hs.436518	NM_194272	ENSG00000166831	RBPMS2	-	RNA binding protein, mRNA processing factor 2	protein-coding
876	chr6	43841944	43848958	+	0	NA	Intergenic	MIRb|SINE|MIR	-13314	NR_024478	100132354	Hs.376232	NR_024478		LINC01512	HI-LNC77	long intergenic non-protein coding RNA 1512	ncRNA
237	chr6	14763002	14764568	+	0	NA	Intergenic	MIR3|SINE|MIR	-478100	NR_108096	102216342	Hs.563409	NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
612	chr21	40715957	40725045	+	0	NA	exon (NM_004965, exon 2 of 6)	exon (NM_004965, exon 2 of 6)	546	NM_004965	3150	Hs.356285	NM_004965	ENSG00000205581	HMGN1	HMG14	high mobility group nucleosome binding domain 1	protein-coding
932	chr17	15857992	15864796	+	0	NA	intron (NM_000676, intron 1 of 1)	AluSp|SINE|Alu	13163	NM_000676	136	Hs.167046	NM_000676	ENSG00000170425	ADORA2B	ADORA2	adenosine A2b receptor	protein-coding
497	chr10	4851946	4875330	+	0	NA	Intergenic	Intergenic	-4731	NM_001271025	83592	Hs.657944	NM_031436	ENSG00000165568	AKR1E2	AKR1CL2|AKRDC1|LoopADR|TAKR|hTSP|htAKR	aldo-keto reductase family 1 member E2	protein-coding
23	chr3	138326217	138329487	+	0	NA	promoter-TSS (NM_018147)	promoter-TSS (NM_018147)	-67	NM_018147	55179	Hs.173438	NM_018147	ENSG00000158234	FAIM	FAIM1	Fas apoptotic inhibitory molecule	protein-coding
441	chr2	33197330	33203524	+	0	NA	intron (NM_206943, intron 2 of 33)	L1PA15|LINE|L1	28058	NM_206943	4052	Hs.619315	NM_000627	ENSG00000049323	LTBP1	-	latent transforming growth factor beta binding protein 1	protein-coding
895	chr9	101623427	101625431	+	0	NA	Intergenic	Intergenic	54448	NM_024642	79695	Hs.47099	NM_024642	ENSG00000119514	GALNT12	CRCS1|GalNAc-T12	polypeptide N-acetylgalactosaminyltransferase 12	protein-coding
190	chr9	131216373	131220192	+	0	NA	promoter-TSS (NM_001351578)	promoter-TSS (NM_001351578)	-3	NM_001351580	4957	Hs.129055	NM_002540	ENSG00000136811	ODF2	CT134|ODF2/1|ODF2/2|ODF84	outer dense fiber of sperm tails 2	protein-coding
735	chr7	6744136	6748910	+	0	NA	promoter-TSS (NM_016265)	promoter-TSS (NM_016265)	43	NM_016265	7559	Hs.431471	NM_006956	ENSG00000164631	ZNF12	GIOT-3|HZF11|KOX3|ZNF325	zinc finger protein 12	protein-coding
937	chr19	4840339	4842391	+	0	NA	intron (NM_005817, intron 7 of 7)	L1MB7|LINE|L1	-9611	NM_182919	148022	Hs.29344	NM_014261	ENSG00000127666	TICAM1	IIAE6|MyD88-3|PRVTIRB|TICAM-1|TRIF	toll like receptor adaptor molecule 1	protein-coding
74	chr17	75115677	75125670	+	0	NA	intron (NM_001204410, intron 2 of 17)	intron (NM_001204410, intron 2 of 17)	-16332	NM_001143998	6397	Hs.464184	NM_003003	ENSG00000129657	SEC14L1	PRELID4A|SEC14L	SEC14 like lipid binding 1	protein-coding
451	chr22	25798204	25803160	+	0	NA	Intergenic	CpG	-23138	NM_001135772	91355	Hs.634058	NM_182492	ENSG00000100068	LRP5L	-	LDL receptor related protein 5 like	protein-coding
195	chr2	10166723	10178552	+	0	NA	Intergenic	Intergenic	10891	NR_135558	101929882	Hs.405158	NR_135558		LOC101929882	-	uncharacterized LOC101929882	ncRNA
800	chr19	39887317	39905708	+	0	NA	promoter-TSS (NM_003407)	promoter-TSS (NM_003407)	-975	NM_003407	7538	Hs.534052	NM_003407	ENSG00000128016	ZFP36	G0S24|GOS24|NUP475|RNF162A|TIS11|TTP|zfp-36	ZFP36 ring finger protein	protein-coding
980	chr6	3345837	3358431	+	0	NA	intron (NR_104448, intron 3 of 11)	intron (NR_104448, intron 3 of 11)	92972	NM_001135750	389362	Hs.207069	NM_001128591	ENSG00000180822	PSMG4	C6orf86|PAC4|bA506K6.2	proteasome assembly chaperone 4	protein-coding
472	chr13	113852111	113884889	+	0	NA	intron (NM_001008895, intron 2 of 19)	intron (NM_001008895, intron 2 of 19)	4678	NM_001354940	8451	Hs.339735	NM_003589	ENSG00000139842	CUL4A	-	cullin 4A	protein-coding
62	chr12	121770895	121773206	+	0	NA	intron (NM_001330489, intron 7 of 16)	AluJr|SINE|Alu	18215	NM_001330489	51433	Hs.7101	NM_016237	ENSG00000089053	ANAPC5	APC5	anaphase promoting complex subunit 5	protein-coding
316	chr16	29615367	29617551	+	0	NA	intron (NR_135317, intron 1 of 11)	intron (NR_135317, intron 1 of 11)	-5873	NR_037451	100500917		NR_037451	ENSG00000265462	MIR3680-1	MIR3680|hsa-mir-3680-1	microRNA 3680-1	ncRNA
695	chr19	12842713	12850633	+	0	NA	Intergenic	Intergenic	-1084	NR_138095	79002	Hs.515155	NM_024038	ENSG00000123144	TRIR	C19orf43|TERCIR|fSAP18	telomerase RNA component interacting RNase	protein-coding
342	chr6	34378151	34399583	+	0	NA	intron (NM_001014, intron 4 of 5)	intron (NM_001014, intron 4 of 5)	4951	NM_001203245	6204	Hs.406620	NM_001014	ENSG00000124614	RPS10	DBA9|S10	ribosomal protein S10	protein-coding
636	chr5	32294913	32301606	+	0	NA	intron (NM_001040446, intron 1 of 15)	intron (NM_001040446, intron 1 of 15)	14855	NM_001040446	54545	Hs.481836	NM_019061	ENSG00000150712	MTMR12	3-PAP|PIP3AP	myotubularin related protein 12	protein-coding
847	chr3	185013229	185018517	+	0	NA	intron (NM_001242317, intron 2 of 12)	intron (NM_001242317, intron 2 of 12)	15144	NM_001242317	9175	Hs.591306	NM_004721	ENSG00000073803	MAP3K13	LZK|MEKK13|MLK	mitogen-activated protein kinase kinase kinase 13	protein-coding
132	chr9	96336267	96341158	+	0	NA	promoter-TSS (NM_005392)	promoter-TSS (NM_005392)	-197	NM_005392	5253	Hs.211441	NM_005392	ENSG00000197724	PHF2	CENP-35|GRC5|JHDM1E|KDM7C	PHD finger protein 2	protein-coding
632	chr15	36869440	36875058	+	0	NA	intron (NM_001321758, intron 1 of 8)	intron (NM_001321758, intron 1 of 8)	445	NM_001321760	84529	Hs.48348	NM_032499	ENSG00000186073	C15orf41	HH114	chromosome 15 open reading frame 41	protein-coding
628	chr17	44052286	44057642	+	0	NA	intron (NM_001123066, intron 4 of 14).2	intron (NM_001123066, intron 4 of 14).2	-21652	NM_001007532	246744	Hs.661831	NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
257	chr7	73492011	73494770	+	0	NA	Intergenic	AluJb|SINE|Alu	-4717	NM_002314	3984	Hs.647035	NM_002314	ENSG00000106683	LIMK1	LIMK|LIMK-1	LIM domain kinase 1	protein-coding
122	chr6	35224812	35232781	+	0	NA	intron (NM_003427, intron 1 of 13)	MIRb|SINE|MIR	1305	NM_003427	7629	Hs.388024	NM_003427	ENSG00000065029	ZNF76	D6S229E|ZNF523|Zfp523	zinc finger protein 76	protein-coding
154	chr6	166753433	166758423	+	0	NA	promoter-TSS (NR_040022)	promoter-TSS (NR_040022)	166	NM_145169	113402	Hs.487143	NM_145169	ENSG00000198818	SFT2D1	C6orf83|pRGR1	SFT2 domain containing 1	protein-coding
540	chr16	56311388	56316019	+	0	NA	intron (NM_020988, intron 3 of 8)	Charlie4z|DNA|hAT-Charlie	34271	NR_037499	100500891		NR_037499	ENSG00000265281	MIR3935	-	microRNA 3935	ncRNA
516	chr11	118303608	118312546	+	0	NA	intron (NM_005933, intron 1 of 35)	intron (NM_005933, intron 1 of 35)	872	NM_001197104	4297	Hs.258855	NM_005933	ENSG00000118058	KMT2A	ALL-1|CXXC7|HRX|HTRX1|MLL|MLL1|MLL1A|TRX1|WDSTS	lysine methyltransferase 2A	protein-coding
536	chr12	121763042	121765714	+	0	NA	intron (NM_001330489, intron 11 of 16)	MIRb|SINE|MIR	25887	NM_001330489	51433	Hs.7101	NM_016237	ENSG00000089053	ANAPC5	APC5	anaphase promoting complex subunit 5	protein-coding
318	chr4	1239043	1245613	+	0	NA	promoter-TSS (NR_033339)	promoter-TSS (NR_033339)	580	NM_001012614	1487	Hs.208597	NM_001328	ENSG00000159692	CTBP1	BARS|HADDTS	C-terminal binding protein 1	protein-coding
206	chr2	38646273	38649183	+	0	NA	Intergenic	AluY|SINE|Alu	-10708	NR_146454	100996902	Hs.128280	NR_146454	ENSG00000235009	LINC01883	-	long intergenic non-protein coding RNA 1883	ncRNA
569	chr6	161495104	161506904	+	0	NA	intron (NM_001301072, intron 5 of 26)	HAL1b|LINE|L1	82010	NR_024277	79992	Hs.664873	NM_024929	ENSG00000279355	AGPAT4-IT1	C6orf59|NCRNA00241	AGPAT4 intronic transcript 1	ncRNA
949	chr19	504950	519440	+	0	NA	intron (NM_033513, intron 1 of 1)	AluJr|SINE|Alu	4698	NM_033513	91978	Hs.369613	NM_033513	ENSG00000141933	TPGS1	C19orf20|GTRGEO22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding
226	chr12	49461338	49466838	+	0	NA	promoter-TSS (NM_001303126)	promoter-TSS (NM_001303126)	-280	NR_130123	121268	Hs.159013	NM_144593	ENSG00000167550	RHEBL1	RHEBL1c	RHEB like 1	protein-coding
76	chr18	53026974	53030447	+	0	NA	intron (NM_001348219, intron 5 of 18)	L2c|LINE|L2	-39620	NM_001243235	6925	Hs.605153	NM_003199	ENSG00000196628	TCF4	E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19	transcription factor 4	protein-coding
939	chr14	73956415	73959876	+	0	NA	exon (NM_024644, exon 2 of 2)	exon (NM_024644, exon 2 of 2)	506	NM_024644	79697	Hs.509916	NM_024644	ENSG00000170468	RIOX1	C14orf169|JMJD9|MAPJD|NO66|ROX|URLC2|hsNO66	ribosomal oxygenase 1	protein-coding
313	chr2	242568541	242570423	+	0	NA	intron (NM_015963, intron 2 of 5)	L1MEe|LINE|L1	7243	NM_015963	51078	Hs.435759	NM_015963	ENSG00000176946	THAP4	CGI-36|PP238	THAP domain containing 4	protein-coding
359	chr1	211728675	211731560	+	0	NA	Intergenic	L1M4|LINE|L1	21982	NM_021194	7779	Hs.519469	NM_021194	ENSG00000170385	SLC30A1	ZNT1|ZRC1	solute carrier family 30 member 1	protein-coding
784	chr14	56681169	56690398	+	0	NA	intron (NM_021255, intron 2 of 5)	intron (NM_021255, intron 2 of 5)	100690	NM_021255	57161	Hs.657926	NM_021255	ENSG00000139946	PELI2	-	pellino E3 ubiquitin protein ligase family member 2	protein-coding
312	chr10	124891448	124901700	+	0	NA	exon (NM_001105574, exon 2 of 2)	exon (NM_001105574, exon 2 of 2)	1007	NM_001105574	340784	Hs.531194	NM_001105574	ENSG00000188620	HMX3	NKX-5.1|NKX5.1|Nkx5-1	H6 family homeobox 3	protein-coding
734	chr14	23023594	23033250	+	0	NA	Intergenic	MIRc|SINE|MIR	-2466	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
723	chr9	94998328	95017166	+	0	NA	intron (NR_073446, intron 25 of 32)	intron (NR_073446, intron 25 of 32)	47082	NR_037424	100500918		NR_037424	ENSG00000281156	MIR3651	mir-3651	microRNA 3651	ncRNA
731	chr7	42959462	42978714	+	0	NA	intron (NM_002787, intron 1 of 7)	intron (NM_002787, intron 1 of 7)	2717	NM_002787	5683	Hs.333786	NM_002787	ENSG00000106588	PSMA2	HC3|MU|PMSA2|PSC2	proteasome subunit alpha 2	protein-coding
595	chr20	49109544	49150530	+	0	NA	intron (NM_001278618, intron 1 of 8)	intron (NM_001278618, intron 1 of 8)	3179	NM_001278618	5770	Hs.417549	NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding
6	chr10	4905980	4915367	+	0	NA	Intergenic	L1MDa|LINE|L1	42304	NM_001040177	83592	Hs.657944	NM_031436	ENSG00000165568	AKR1E2	AKR1CL2|AKRDC1|LoopADR|TAKR|hTSP|htAKR	aldo-keto reductase family 1 member E2	protein-coding
988	chr3	176741265	176748850	+	0	NA	intron (NM_001321194, intron 15 of 16)	AluJr|SINE|Alu	169215	NM_001321193	79718	Hs.714201	NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	transducin beta like 1 X-linked receptor 1	protein-coding
947	chr16	67430070	67434181	+	0	NA	exon (NM_013304, exon 8 of 11)	exon (NM_013304, exon 8 of 11)	-4687	NM_016140	51673	Hs.534458	NM_015964	ENSG00000159713	TPPP3	CGI-38|TPPP/p20|p20|p25gamma	tubulin polymerization promoting protein family member 3	protein-coding
338	chr15	75915849	75921954	+	0	NA	promoter-TSS (NM_005701)	promoter-TSS (NM_005701)	-182	NM_001042588	10073	Hs.21577	NM_005701	ENSG00000169371	SNUPN	KPNBL|RNUT1|Snurportin1	snurportin 1	protein-coding
996	chr6	51027097	51030450	+	0	NA	Intergenic	Intergenic	242334	NM_003221	7021	Hs.33102	NM_003221	ENSG00000008196	TFAP2B	AP-2B|AP2-B|PDA2	transcription factor AP-2 beta	protein-coding
689	chr8	23075917	23087008	+	0	NA	intron (NM_003844, intron 1 of 9)	intron (NM_003844, intron 1 of 9)	1218	NM_003844	8797	Hs.213467	NM_003844	ENSG00000104689	TNFRSF10A	APO2|CD261|DR4|TRAILR-1|TRAILR1	TNF receptor superfamily member 10a	protein-coding
683	chr4	25923920	25926044	+	0	NA	intron (NM_001145432, intron 1 of 2)	intron (NM_001145432, intron 1 of 2)	9168	NM_001145432	389203	Hs.479386	NM_001145432	ENSG00000250317	SMIM20	C4orf52|MITRAC7|PNX	small integral membrane protein 20	protein-coding
423	chr22	19483801	19487501	+	0	NA	intron (NM_001178011, intron 7 of 17)	AluSq2|SINE|Alu	18302	NM_001178011	8318	Hs.474217	NM_003504	ENSG00000093009	CDC45	CDC45L|CDC45L2|MGORS7|PORC-PI-1	cell division cycle 45	protein-coding
823	chr14	34492162	34538540	+	0	NA	Intergenic	MIRb|SINE|MIR	-95067	NM_022073	112399	Hs.135507	NM_022073	ENSG00000129521	EGLN3	HIFP4H3|HIFPH3|PHD3	egl-9 family hypoxia inducible factor 3	protein-coding
942	chr1	87899987	87903781	+	0	NA	Intergenic	Intergenic	-64546	NR_038324	100505768	Hs.125247	NR_038324	ENSG00000227290	LINC01364	-	long intergenic non-protein coding RNA 1364	ncRNA
650	chr14	23385376	23394346	+	0	NA	non-coding (NR_120599, exon 1 of 2)	non-coding (NR_120599, exon 1 of 2)	1196	NR_120600	100505758	Hs.655707	NR_120599	ENSG00000237054	PRMT5-AS1	-	PRMT5 antisense RNA 1	ncRNA
290	chr19	29063315	29067197	+	0	NA	intron (NR_110759, intron 5 of 9)	MSTA|LTR|ERVL-MaLR	-32339	NR_135636	102724908		NR_135636	ENSG00000266976	LOC102724908	-	uncharacterized LOC102724908	ncRNA
940	chr2	73509956	73512838	+	0	NA	Intergenic	CpG	9432	NM_001965	1961	Hs.3052	NM_001965	ENSG00000135625	EGR4	AT133|NGFI-C|NGFIC|PAT133	early growth response 4	protein-coding
109	chr18	51792889	51798904	+	0	NA	promoter-TSS (NM_001351632)	promoter-TSS (NM_001351632)	47	NM_001351613	11201	Hs.438533	NM_007195	ENSG00000101751	POLI	RAD30B|RAD3OB|eta2	DNA polymerase iota	protein-coding
113	chr3	5013043	5042135	+	0	NA	TTS (NM_003670)	TTS (NM_003670)	-5943	NR_125915	100507582	Hs.434505	NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
772	chr5	134657888	134674486	+	0	NA	intron (NM_001277348, intron 3 of 5)	intron (NM_001277348, intron 3 of 5)	68741	NM_001040158	9555	Hs.420272	NM_004893	ENSG00000113648	H2AFY	H2A.y|H2A/y|H2AF12M|MACROH2A1.1|mH2A1|macroH2A1.2	H2A histone family member Y	protein-coding
5	chr11	63604133	63609924	+	0	NA	exon (NM_004954, exon 1 of 17)	exon (NM_004954, exon 1 of 17)	628	NM_001039469	2011	Hs.567261	NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
675	chr4	96194797	96196949	+	0	NA	intron (NM_003728, intron 4 of 15)	intron (NM_003728, intron 4 of 15)	183231	NM_001256794	658	Hs.598475	NM_001203	ENSG00000138696	BMPR1B	ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293	bone morphogenetic protein receptor type 1B	protein-coding
229	chr13	95917361	95929451	+	0	NA	intron (NM_001301829, intron 1 of 29)	intron (NM_001301829, intron 1 of 29)	30294	NM_001301829	10257	Hs.508423	NM_005845	ENSG00000125257	ABCC4	MOAT-B|MOATB|MRP4	ATP binding cassette subfamily C member 4	protein-coding
267	chr17	17138202	17144157	+	0	NA	promoter-TSS (NM_144997)	promoter-TSS (NM_144997)	-674	NM_001353230	201163	Hs.31652	NM_144606	ENSG00000154803	FLCN	BHD|FLCL	folliculin	protein-coding
311	chr16	23902204	23904173	+	0	NA	intron (NM_212535, intron 2 of 16)	intron (NM_212535, intron 2 of 16)	55888	NM_002738	5579	Hs.460355	NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
858	chr10	105674818	105682997	+	0	NA	promoter-TSS (NM_024928)	promoter-TSS (NM_024928)	-862	NM_024928	79991	Hs.62314	NM_024928	ENSG00000107960	STN1	AAF-44|AAF44|OBFC1|RPA-32|bA541N10.2	STN1, CST complex subunit	protein-coding
849	chr19	49254419	49260281	+	0	NA	promoter-TSS (NM_001329877)	promoter-TSS (NM_001329877)	-433	NM_001329877	2523	Hs.69747	NM_000148	ENSG00000174951	FUT1	H|HH|HSC	fucosyltransferase 1 (H blood group)	protein-coding
373	chr20	34249993	34254287	+	0	NA	intron (NM_001198838, intron 1 of 2)	intron (NM_001198838, intron 1 of 2)	719	NR_037188	8904	Hs.246413	NM_003915	ENSG00000214078	CPNE1	COPN1|CPN1	copine 1	protein-coding
309	chr22	19031988	19035205	+	0	NA	TTS (NR_024157)	TTS (NR_024157)	2292	NR_024157	25786	Hs.720269	NR_024157	ENSG00000273311	DGCR11	DGS-D	DiGeorge syndrome critical region gene 11 (non-protein coding)	ncRNA
357	chr12	124154504	124156666	+	0	NA	promoter-TSS (NM_001143850)	promoter-TSS (NM_001143850)	-75	NM_024809	79867	Hs.167165	NM_024809	ENSG00000168778	TCTN2	C12orf38|JBTS24|MKS8|TECT2	tectonic family member 2	protein-coding
278	chr9	80472325	80473995	+	0	NA	intron (NM_002072, intron 2 of 6)	intron (NM_002072, intron 2 of 6)	173205	NM_002072	2776	Hs.269782	NM_002072	ENSG00000156052	GNAQ	CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
32	chr3	45986918	45993758	+	0	NA	TTS (NM_006564)	TTS (NM_006564)	5365	NM_006564	10663	Hs.34526	NM_006564	ENSG00000172215	CXCR6	BONZO|CD186|STRL33|TYMSTR	C-X-C motif chemokine receptor 6	protein-coding
673	chr3	39091629	39096280	+	0	NA	promoter-TSS (NM_001349253)	promoter-TSS (NM_001349253)	171	NM_001346228	57599	Hs.109778	NM_020839	ENSG00000114742	WDR48	P80|SPG60|UAF1	WD repeat domain 48	protein-coding
412	chr19	2288344	2290374	+	0	NA	TTS (NM_001101391)	TTS (NM_001101391)	-7178	NM_198532	374872	Hs.511803	NM_198532	ENSG00000188305	PEAK3	C19orf35	PEAK family member 3	protein-coding
97	chr1	32107609	32112654	+	0	NA	promoter-TSS (NM_001359651)	promoter-TSS (NM_001359651)	87	NM_001359651	553115	Hs.470417	NM_012392	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
134	chr1	156558869	156564647	+	0	NA	exon (NM_144772, exon 1 of 6)	exon (NM_144772, exon 1 of 6)	200	NM_144772	128240	Hs.528320	NM_144772	ENSG00000163382	NAXE	AIBP|APOA1BP|PEBEL|YJEFN1	NAD(P)HX epimerase	protein-coding
682	chr10	112521965	112527666	+	0	NA	intron (NM_001134363, intron 1 of 13)	intron (NM_001134363, intron 1 of 13)	105847	NR_026932	282997	Hs.599931	NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
605	chr12	49553299	49554830	+	0	NA	Intergenic	MER50|LTR|ERV1	-28760	NM_006082	10376	Hs.524390	NM_006082	ENSG00000123416	TUBA1B	K-ALPHA-1	tubulin alpha 1b	protein-coding
568	chr9	4717235	4720805	+	0	NA	intron (NM_001199856, intron 3 of 4)	intron (NM_001199856, intron 3 of 4)	7207	NM_001199856	50808	Hs.732022	NM_016282	ENSG00000147853	AK3	AK3L1|AK6|AKL3L|AKL3L1|FIX	adenylate kinase 3	protein-coding
919	chr13	52484564	52506101	+	0	NA	Intergenic	Intergenic	59248	NM_031290	83446	Hs.120573	NM_031290	ENSG00000123171	CCDC70	-	coiled-coil domain containing 70	protein-coding
430	chr17	42059427	42062172	+	0	NA	intron (NM_004160, intron 1 of 6)	intron (NM_004160, intron 1 of 6)	21038	NM_004160	5697	Hs.169249	NM_004160	ENSG00000131096	PYY	PYY-I|PYY1	peptide YY	protein-coding
623	chr19	34877022	34884457	+	0	NA	intron (NM_000175, intron 9 of 17)	intron (NM_000175, intron 9 of 17)	-14564	NM_001353433	84306	Hs.515344	NM_032346	ENSG00000126249	PDCD2L	-	programmed cell death 2 like	protein-coding
560	chr15	42833478	42847832	+	0	NA	promoter-TSS (NM_001323632)	promoter-TSS (NM_001323632)	347	NM_153260	255252	Hs.234681	NM_153260	ENSG00000180979	LRRC57	-	leucine rich repeat containing 57	protein-coding
609	chr3	11548541	11553014	+	0	NA	intron (NM_001349238, intron 17 of 17)	intron (NM_001349238, intron 17 of 17)	59621	NM_001128221	9686	Hs.740389	NM_014667	ENSG00000144560	VGLL4	VGL-4	vestigial like family member 4	protein-coding
993	chr3	4461311	4463979	+	0	NA	intron (NM_001164674, intron 2 of 7)	MIRc|SINE|MIR	46321	NM_001164674	285362	Hs.350475	NM_182760	ENSG00000144455	SUMF1	AAPA3037|FGE|UNQ3037	sulfatase modifying factor 1	protein-coding
877	chr3	48752062	48757140	+	0	NA	non-coding (NR_027438, exon 1 of 4)	non-coding (NR_027438, exon 1 of 4)	110	NR_027437	51447	Hs.595983	NM_016291	ENSG00000068745	IP6K2	IHPK2|PIUS	inositol hexakisphosphate kinase 2	protein-coding
427	chr22	22915620	22919725	+	0	NA	Intergenic	Intergenic	-15904	NM_001291717	23532	Hs.30743	NM_006115	ENSG00000185686	PRAME	CT130|MAPE|OIP-4|OIP4	preferentially expressed antigen in melanoma	protein-coding
328	chr11	117880924	117884581	+	0	NA	Intergenic	Intergenic	25646	NM_001558	3587	Hs.504035	NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
375	chr7	129246438	129258311	+	0	NA	intron (NM_005011, intron 1 of 10)	CpG	831	NM_005011	4899	Hs.654363	NM_005011	ENSG00000106459	NRF1	ALPHA-PAL	nuclear respiratory factor 1	protein-coding
732	chr22	48025658	48028907	+	0	NA	promoter-TSS (NR_033377)	promoter-TSS (NR_033377)	36	NR_033377	400932	Hs.561058	NM_001001693	ENSG00000205634	LINC00898	-	long intergenic non-protein coding RNA 898	ncRNA
