PeakID (cmd=annotatePeaks.pl ./example/HCT116_custom_model_example/tmp/anchor2.tmp hg19)	Chr	Start	End	Strand	Peak Score	Focus Ratio/Region Size	Annotation	Detailed Annotation	Distance to TSS	Nearest PromoterID	Entrez ID	Nearest Unigene	Nearest Refseq	Nearest Ensembl	Gene Name	Gene Alias	Gene Description	Gene Type
148	chr10	75909460	75912401	+	0	NA	promoter-TSS (NR_135191)	promoter-TSS (NR_135191)	-13	NM_001202450	132	Hs.656586	NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
137	chr19	39918208	39922794	+	0	NA	Intergenic	AluSx3|SINE|Alu	6159	NM_001020	6217	Hs.397609	NM_001020	ENSG00000105193	RPS16	S16	ribosomal protein S16	protein-coding
758	chr9	22101064	22105344	+	0	NA	intron (NR_047532, intron 9 of 13)	intron (NR_047532, intron 9 of 13)	-93892	NM_078487	1030	Hs.72901	NM_004936	ENSG00000147883	CDKN2B	CDK4I|INK4B|MTS2|P15|TP15|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding
70	chr16	85643364	85650231	+	0	NA	promoter-TSS (NM_001278184)	promoter-TSS (NM_001278184)	61	NM_001278184	23199	Hs.461647	NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
443	chr12	95609918	95613868	+	0	NA	promoter-TSS (NM_018351)	promoter-TSS (NM_018351)	371	NM_001352089	55591	Hs.24135	NM_017599	ENSG00000028203	VEZT	VEZATIN	vezatin, adherens junctions transmembrane protein	protein-coding
128	chr1	235665808	235671315	+	0	NA	promoter-TSS (NM_152490)	promoter-TSS (NM_152490)	-780	NM_001277155	148789	Hs.498143	NM_152490	ENSG00000162885	B3GALNT2	B3GalNAc-T2|MDDGA11	beta-1,3-N-acetylgalactosaminyltransferase 2	protein-coding
13	chr12	32551336	32554263	+	0	NA	Intergenic	CpG	-86107	NM_001304481	121512	Hs.117835	NM_139241	ENSG00000139132	FGD4	CMT4H|FRABP|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding
231	chr1	16506701	16512295	+	0	NA	Intergenic	AluSx1|SINE|Alu	-26894	NM_001329090	1969	Hs.171596	NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
816	chr19	14199871	14204058	+	0	NA	promoter-TSS (NM_138352)	promoter-TSS (NM_138352)	-577	NM_138352	90378	Hs.140309	NM_138352	ENSG00000141858	SAMD1	-	sterile alpha motif domain containing 1	protein-coding
979	chr3	93779939	93783334	+	0	NA	promoter-TSS (NM_022072)	promoter-TSS (NM_022072)	-113	NM_022072	63899	Hs.436594	NM_022072	ENSG00000178694	NSUN3	MST077|MSTP077	NOP2/Sun RNA methyltransferase family member 3	protein-coding
153	chr3	48505741	48509898	+	0	NA	TTS (NM_001271023)	TTS (NM_001271023)	190	NM_033629	11277	Hs.707026	NM_007248	ENSG00000213689	TREX1	AGS1|CRV|DRN3|HERNS	three prime repair exonuclease 1	protein-coding
1	chr9	38034932	38041461	+	0	NA	intron (NM_003028, intron 1 of 5)	intron (NM_003028, intron 1 of 5)	31014	NM_003028	6461	Hs.521482	NM_003028	ENSG00000107338	SHB	bA3J10.2	SH2 domain containing adaptor protein B	protein-coding
577	chr2	226977573	227004136	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-16656	NR_046102	646736	Hs.712836	NR_046102		LOC646736	-	uncharacterized LOC646736	ncRNA
150	chr12	57021917	57024592	+	0	NA	intron (NM_013449, intron 1 of 28)	intron (NM_013449, intron 1 of 28)	861	NM_001300905	11176	Hs.314263	NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
455	chr7	100461941	100467030	+	0	NA	promoter-TSS (NM_003302)	promoter-TSS (NM_003302)	-465	NM_003302	7205	Hs.534360	NM_003302	ENSG00000087077	TRIP6	OIP-1|OIP1|TRIP-6|TRIP6i2|ZRP-1	thyroid hormone receptor interactor 6	protein-coding
87	chr1	25050130	25052566	+	0	NA	Intergenic	Intergenic	-20412	NM_013943	25932	Hs.440544	NM_013943	ENSG00000169504	CLIC4	CLIC4L|H1|MTCLIC|huH1|p64H1	chloride intracellular channel 4	protein-coding
589	chr1	24115159	24119744	+	0	NA	promoter-TSS (NM_007260)	promoter-TSS (NM_007260)	-195	NM_007260	11313	Hs.533479	NM_007260	ENSG00000011009	LYPLA2	APT-2|APT2|DJ886K2.4	lysophospholipase II	protein-coding
521	chr14	78225767	78228962	+	0	NA	5' UTR (NM_001173978, exon 1 of 2)	5' UTR (NM_001173978, exon 1 of 2)	133	NM_012245	22938	Hs.445498	NM_012245	ENSG00000100603	SNW1	Bx42|FUN20|NCOA-62|PRPF45|Prp45|SKIIP|SKIP|SKIP1	SNW domain containing 1	protein-coding
408	chr8	23019730	23022624	+	0	NA	intron (NM_003840, intron 1 of 8)	CpG	366	NM_003840	8793	Hs.213467	NM_003840	ENSG00000173530	TNFRSF10D	CD264|DCR2|TRAIL-R4|TRAILR4|TRUNDD	TNF receptor superfamily member 10d	protein-coding
517	chr8	145112744	145116701	+	0	NA	intron (NM_017570, intron 2 of 27)	CpG	884	NM_017570	26873	Hs.305882	NM_017570	ENSG00000178814	OPLAH	5-Opase|OPLA|OPLAHD	5-oxoprolinase, ATP-hydrolysing	protein-coding
34	chr17	64502962	64507102	+	0	NA	intron (NM_002737, intron 3 of 16)	intron (NM_002737, intron 3 of 16)	-92060	NR_110822	101928001	Hs.650730	NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
349	chr21	37513471	37515315	+	0	NA	intron (NR_038894, intron 2 of 2)	L1MC4|LINE|L1	7130	NM_001236	874	Hs.154510	NM_001236	ENSG00000159231	CBR3	HEL-S-25|SDR21C2|hCBR3	carbonyl reductase 3	protein-coding
406	chr1	36771209	36774135	+	0	NA	promoter-TSS (NM_024676)	promoter-TSS (NM_024676)	-36	NM_024676	79729	Hs.524496	NM_024676	ENSG00000214193	SH3D21	C1orf113	SH3 domain containing 21	protein-coding
316	chr8	128304304	128314225	+	0	NA	intron (NR_117100, intron 5 of 5)	intron (NR_117100, intron 5 of 5)	52382	NR_117099	103021164	Hs.571531	NR_117099		CASC21	CARLO2|CARLo-2|LINC01244	cancer susceptibility 21 (non-protein coding)	ncRNA
286	chr13	28022445	28026921	+	0	NA	promoter-TSS (NM_001166262)	promoter-TSS (NM_001166262)	56	NM_152912	219402	Hs.534582	NM_152912	ENSG00000122033	MTIF3	IF3mt	mitochondrial translational initiation factor 3	protein-coding
341	chr1	213347789	213352300	+	0	NA	intron (NM_001349665, intron 6 of 10)	intron (NM_001349665, intron 6 of 10)	125469	NM_001349652	26750	Hs.591416	NM_012424	ENSG00000136643	RPS6KC1	RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1	ribosomal protein S6 kinase C1	protein-coding
91	chr2	173939297	173942467	+	0	NA	intron (NM_016653, intron 1 of 19)	CpG	317	NM_133646	51776	Hs.444451	NM_016653	ENSG00000091436	MAP3K20	AZK|CNM6|MLK7|MLT|MLTK|MLTKalpha|MLTKbeta|MRK|SFMMP|ZAK|mlklak|pk	mitogen-activated protein kinase kinase kinase 20	protein-coding
503	chr13	42678889	42681648	+	0	NA	intron (NM_152910, intron 1 of 28)	AluSx|SINE|Alu	-31910	NM_001297429	160851	Hs.630380	NM_152910	ENSG00000102780	DGKH	DGKeta	diacylglycerol kinase eta	protein-coding
160	chr9	130322087	130333114	+	0	NA	intron (NM_001035534, intron 1 of 13)	L1MB8|LINE|L1	3796	NM_022833	64855	Hs.522401	NM_022833	ENSG00000136830	FAM129B	C9orf88|MEG-3|MINERVA|OC58|bA356B19.6	family with sequence similarity 129 member B	protein-coding
239	chr12	66117365	66125456	+	0	NA	Intergenic	Intergenic	-85258	NR_120432	100507065	Hs.591038	NR_120431		LOC100507065	-	uncharacterized LOC100507065	ncRNA
188	chr8	29367489	29372416	+	0	NA	Intergenic	AluJr|SINE|Alu	-161685	NM_001394	1846	Hs.417962	NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
294	chr15	74906593	74910628	+	0	NA	intron (NM_001130028, intron 1 of 12)	intron (NM_001130028, intron 1 of 12)	1275	NM_001130028	1198	Hs.511790	NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
677	chr17	73399796	73402456	+	0	NA	intron (NM_002086, intron 1 of 5)	intron (NM_002086, intron 1 of 5)	663	NM_002086	2885	Hs.444356	NM_002086	ENSG00000177885	GRB2	ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2	growth factor receptor bound protein 2	protein-coding
84	chr12	58164556	58168039	+	0	NA	promoter-TSS (NM_023033)	promoter-TSS (NM_023033)	-86	NM_206914	25895	Hs.632720	NM_015433	ENSG00000123427	EEF1AKMT3	FAM119B|METTL21B	EEF1A lysine methyltransferase 3	protein-coding
564	chr17	43660113	43664873	+	0	NA	Intergenic	CpG	16735	NR_026901	644172	Hs.448859	NR_026901		MAPK8IP1P2	-	mitogen-activated protein kinase 8 interacting protein 1 pseudogene 2	pseudo
197	chr10	105126468	105128973	+	0	NA	promoter-TSS (NM_006951)	promoter-TSS (NM_006951)	10	NM_139052	6877	Hs.96103	NM_006951	ENSG00000148835	TAF5	TAF(II)100|TAF2D|TAFII-100|TAFII100	TATA-box binding protein associated factor 5	protein-coding
734	chr14	53172528	53175753	+	0	NA	intron (NM_002806, intron 1 of 13)	intron (NM_002806, intron 1 of 13)	244	NM_002806	5706	Hs.156171	NM_002806	ENSG00000100519	PSMC6	CADP44|HEL-S-73|P44|SUG2|p42	proteasome 26S subunit, ATPase 6	protein-coding
811	chr19	1441730	1447896	+	0	NA	Intergenic	Intergenic	-5335	NM_005883	10297	Hs.446376	NM_005883	ENSG00000115266	APC2	APCL	APC2, WNT signaling pathway regulator	protein-coding
830	chr1	898988	903729	+	0	NA	promoter-TSS (NM_001160184)	promoter-TSS (NM_001160184)	-519	NM_001160184	84069	Hs.528691	NM_032129	ENSG00000187583	PLEKHN1	CLPABP	pleckstrin homology domain containing N1	protein-coding
163	chr12	53385855	53388395	+	0	NA	Intergenic	Intergenic	-12917	NM_001417	1975	Hs.648394	NM_001417	ENSG00000063046	EIF4B	EIF-4B|PRO1843	eukaryotic translation initiation factor 4B	protein-coding
428	chr16	1428098	1430183	+	0	NA	intron (NM_001193388, intron 10 of 14)	CpG	544	NM_001276414	64718	Hs.643536	NM_023076	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unkempt family like zinc finger	protein-coding
743	chr7	79777714	79781841	+	0	NA	intron (NM_001256414, intron 1 of 7)	L1ME3C|LINE|L1	14706	NM_001256414	2770	Hs.134587	NM_002069	ENSG00000127955	GNAI1	Gi	G protein subunit alpha i1	protein-coding
85	chr10	61723200	61726877	+	0	NA	Intergenic	LTR81B|LTR|Gypsy	-4367	NR_024340	283025	Hs.522955	NM_001017982	ENSG00000235931	LINC01553	C10orf40	long intergenic non-protein coding RNA 1553	ncRNA
209	chr6	35435452	35439984	+	0	NA	promoter-TSS (NR_106961)	promoter-TSS (NR_106961)	-567	NR_106961	102465668		NR_106961	ENSG00000276712	MIR7111	hsa-mir-7111	microRNA 7111	ncRNA
471	chr5	6376291	6379250	+	0	NA	intron (NM_032286, intron 1 of 3)	intron (NM_032286, intron 1 of 3)	869	NM_032286	84246	Hs.13885	NM_032286	ENSG00000133398	MED10	L6|NUT2|TRG20	mediator complex subunit 10	protein-coding
730	chr9	34327311	34331268	+	0	NA	promoter-TSS (NM_147173)	promoter-TSS (NM_147173)	-42	NM_194313	347240	Hs.710246	NM_194313	ENSG00000186638	KIF24	C9orf48|bA571F15.4	kinesin family member 24	protein-coding
320	chr12	76369410	76381892	+	0	NA	Intergenic	Intergenic	49905	NM_007350	22822	Hs.602085	NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
788	chr11	67793862	67799335	+	0	NA	3' UTR (NM_001030010, exon 11 of 11)	3' UTR (NM_001030010, exon 11 of 11)	-1486	NM_002496	4728	Hs.90443	NM_002496	ENSG00000110717	NDUFS8	CI-23k|CI23KD|TYKY	NADH:ubiquinone oxidoreductase core subunit S8	protein-coding
763	chr12	66021461	66030588	+	0	NA	intron (NR_120432, intron 1 of 4)	MLT1H1|LTR|ERVL-MaLR	10128	NR_120433	100507065	Hs.591038	NR_120431		LOC100507065	-	uncharacterized LOC100507065	ncRNA
590	chr13	107184947	107189024	+	0	NA	intron (NM_004093, intron 1 of 4)	CpG	403	NM_004093	1948	Hs.149239	NM_004093	ENSG00000125266	EFNB2	EPLG5|HTKL|Htk-L|LERK5	ephrin B2	protein-coding
551	chr1	39856556	39866525	+	0	NA	intron (NM_012090, intron 52 of 92)	intron (NM_012090, intron 52 of 92)	-13636	NM_015038	643314	Hs.658760	NM_015038	ENSG00000127603	KIAA0754	-	KIAA0754	protein-coding
95	chr19	17558316	17562609	+	0	NA	Intergenic	AluJo|SINE|Alu	-1086	NM_001190844	100130519	Hs.436603	NM_001190844	ENSG00000188051	TMEM221	-	transmembrane protein 221	protein-coding
606	chr6	31668587	31672587	+	0	NA	non-coding (NR_033488, exon 1 of 20)	non-coding (NR_033488, exon 1 of 20)	263	NM_001177515	7920	Hs.388188	NM_021160	ENSG00000204427	ABHD16A	BAT5|D6S82E|NG26|PP199	abhydrolase domain containing 16A	protein-coding
181	chr15	59591198	59593776	+	0	NA	intron (NM_004998, intron 1 of 27)	intron (NM_004998, intron 1 of 27)	72584	NM_004998	4643	Hs.654506	NM_004998	ENSG00000157483	MYO1E	FSGS6|HuncM-IC|MYO1C	myosin IE	protein-coding
932	chr17	44871756	44874099	+	0	NA	intron (NM_030753, intron 1 of 4)	intron (NM_030753, intron 1 of 4)	23199	NM_030753	7473	Hs.445884	NM_030753	ENSG00000108379	WNT3	INT4|TETAMS	Wnt family member 3	protein-coding
483	chr16	4356068	4359125	+	0	NA	Intergenic	CpG	-7166	NM_001318918	84662	Hs.592087	NM_032575	ENSG00000126603	GLIS2	NKL|NPHP7	GLIS family zinc finger 2	protein-coding
281	chr8	33369182	33372835	+	0	NA	promoter-TSS (NM_025115)	promoter-TSS (NM_025115)	-298	NM_001330505	80185	Hs.77135	NM_025115	ENSG00000129696	TTI2	C8orf41|MRT39	TELO2 interacting protein 2	protein-coding
337	chr2	113339844	113344777	+	0	NA	promoter-TSS (NM_001304354)	promoter-TSS (NM_001304354)	-139	NM_001304354	84269	Hs.375707	NM_032309	ENSG00000125611	CHCHD5	C2orf9|MIC14|MIX14	coiled-coil-helix-coiled-coil-helix domain containing 5	protein-coding
105	chr19	9693484	9696220	+	0	NA	intron (NM_001008727, intron 1 of 3)	intron (NM_001008727, intron 1 of 3)	357	NM_001308269	7675	Hs.501537	NM_001008727	ENSG00000197961	ZNF121	D19S204|ZHC32|ZNF20	zinc finger protein 121	protein-coding
47	chr6	25277722	25281302	+	0	NA	promoter-TSS (NM_001173977)	promoter-TSS (NM_001173977)	-144	NM_001173977	55604	Hs.649550	NM_017640	ENSG00000079691	CARMIL1	CARMIL|CARMIL1a|LRRC16|LRRC16A|dJ501N12.1|dJ501N12.5	capping protein regulator and myosin 1 linker 1	protein-coding
512	chr3	185502404	185506565	+	0	NA	intron (NM_001007225, intron 2 of 14)	LTR7|LTR|ERV1	-18792	NR_049838	100847078		NR_049838	ENSG00000265470	MIR548AQ	-	microRNA 548aq	ncRNA
957	chr12	66273936	66292160	+	0	NA	intron (NM_003483, intron 3 of 4)	intron (NM_003483, intron 3 of 4)	-7101	NM_001292024	100129940	Hs.685856	NM_001292023	ENSG00000197301	LOC100129940	-	uncharacterized LOC100129940	protein-coding
507	chr7	100270397	100273938	+	0	NA	intron (NM_005273, intron 1 of 9)	CpG	804	NM_005273	2783	Hs.185172	NM_005273	ENSG00000172354	GNB2	-	G protein subunit beta 2	protein-coding
504	chr20	48767114	48771411	+	0	NA	intron (NR_027889, intron 1 of 6)	intron (NR_027889, intron 1 of 6)	1073	NM_199203	387522	Hs.744839	NM_003349	ENSG00000124208	TMEM189-UBE2V1	CROC-1B|CROC1B|KUA-UEV	TMEM189-UBE2V1 readthrough	protein-coding
876	chr1	46015095	46018116	+	0	NA	5' UTR (NM_153326, exon 1 of 9)	5' UTR (NM_153326, exon 1 of 9)	150	NM_006066	10327	Hs.474584	NM_006066	ENSG00000117448	AKR1A1	ALDR1|ALR|ARM|DD3|HEL-S-6	aldo-keto reductase family 1 member A1	protein-coding
103	chr8	90552937	90560595	+	0	NA	Intergenic	MIRb|SINE|MIR	213173	NR_125822	101929709	Hs.651324	NR_125822	ENSG00000251136	LOC101929709	-	uncharacterized LOC101929709	ncRNA
19	chr12	124066459	124070960	+	0	NA	promoter-TSS (NM_001321445)	promoter-TSS (NM_001321445)	165	NR_110049	101927415	Hs.636524	NR_110049		LOC101927415	-	uncharacterized LOC101927415	ncRNA
928	chr5	92278032	92282627	+	0	NA	Intergenic	MamRep38|DNA|hAT	626720	NR_109825	441094	Hs.457407	NR_015369	ENSG00000237187	NR2F1-AS1	-	NR2F1 antisense RNA 1	ncRNA
647	chr1	8232264	8236261	+	0	NA	Intergenic	AluSz|SINE|Alu	-34470	NR_125998	102724539	Hs.516816	NR_125998	ENSG00000227634	LINC01714	-	long intergenic non-protein coding RNA 1714	ncRNA
415	chr10	32174944	32180372	+	0	NA	intron (NM_001270697, intron 3 of 18)	intron (NM_001270697, intron 3 of 18)	20196	NM_001270699	94134	Hs.499264	NM_018287	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
300	chr12	76336748	76350450	+	0	NA	Intergenic	Intergenic	81957	NM_007350	22822	Hs.602085	NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
621	chr16	3206888	3212431	+	0	NA	Intergenic	AluJb|SINE|Alu	15367	NR_132322	197350	Hs.434132	NR_132322	ENSG00000228146	CASP16P	CASP16	caspase 16, pseudogene	pseudo
799	chr20	60695182	60698735	+	0	NA	promoter-TSS (NM_144703)	promoter-TSS (NM_144703)	-559	NM_144703	149986	Hs.105379	NM_144703	ENSG00000149657	LSM14B	C20orf40|FAM61B|FT005|LSM13|RAP55B|bA11M20.3	LSM family member 14B	protein-coding
60	chr22	19433931	19436423	+	0	NA	intron (NM_173793, intron 1 of 2)	CpG-17510	578	NM_001166242	128977	Hs.659565	NM_173793	ENSG00000242259	C22orf39	-	chromosome 22 open reading frame 39	protein-coding
772	chr2	43821674	43825788	+	0	NA	promoter-TSS (NM_001271643)	promoter-TSS (NM_001271643)	-546	NR_073394	63892	Hs.369592	NM_022065	ENSG00000115970	THADA	ARMC13|GITA	THADA, armadillo repeat containing	protein-coding
938	chr2	171784061	171788348	+	0	NA	intron (NM_015530, intron 1 of 9)	CpG	1168	NM_015530	26003	Hs.431317	NM_015530	ENSG00000115806	GORASP2	GOLPH6|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding
353	chr9	26945644	26949724	+	0	NA	promoter-TSS (NM_001321546)	promoter-TSS (NM_001321546)	-213	NM_001321546	9373	Hs.27182	NM_004253	ENSG00000137055	PLAA	DOA1|NDMSBA|PLA2P|PLAP	phospholipase A2 activating protein	protein-coding
372	chr7	99861326	99863576	+	0	NA	intron (NM_178831, intron 1 of 4)	intron (NM_178831, intron 1 of 4)	7404	NR_028038	352954	Hs.556063	NM_178831	ENSG00000239521	CASTOR3	GATS|STAG3OS	CASTOR family member 3	protein-coding
594	chr19	48892478	48895344	+	0	NA	intron (NM_006801, intron 1 of 4)	intron (NM_006801, intron 1 of 4)	899	NM_006801	10945	Hs.515515	NM_006801	ENSG00000105438	KDELR1	ERD2|ERD2.1|HDEL|PM23	KDEL endoplasmic reticulum protein retention receptor 1	protein-coding
568	chr16	30417748	30421659	+	0	NA	intron (NM_016643, intron 2 of 2)	L2b|LINE|L2	968	NM_001142305	51333	Hs.148584	NM_016643	ENSG00000179965	ZNF771	DSC43	zinc finger protein 771	protein-coding
285	chr1	150292235	150295243	+	0	NA	promoter-TSS (NM_004698)	promoter-TSS (NM_004698)	-178	NM_004698	9129	Hs.11776	NM_004698	ENSG00000117360	PRPF3	HPRP3|HPRP3P|PRP3|Prp3p|RP18|SNRNP90	pre-mRNA processing factor 3	protein-coding
448	chr6	31169473	31172807	+	0	NA	non-coding (NR_026791, exon 2 of 2)	non-coding (NR_026791, exon 2 of 2)	5603	NR_026791	253018	Hs.659818	NR_026791	ENSG00000206344	HCG27	bCX101P6.9|bPG299F13.9|bQB115I13.2	HLA complex group 27 (non-protein coding)	ncRNA
256	chr1	156865276	156868048	+	0	NA	intron (NM_001080471, intron 1 of 22)	intron (NM_001080471, intron 1 of 22)	3139	NM_001080471	375033	Hs.142003	NM_207369	ENSG00000187800	PEAR1	JEDI|MEGF12	platelet endothelial aggregation receptor 1	protein-coding
36	chr17	74782462	74784941	+	0	NA	Intergenic	Intergenic	-11425	NR_110837	101928514	Hs.617206	NR_110837	ENSG00000267065	LINC02080	-	long intergenic non-protein coding RNA 2080	ncRNA
542	chr22	18559581	18562675	+	0	NA	5' UTR (NM_001199319, exon 2 of 5)	5' UTR (NM_001199319, exon 2 of 5)	368	NM_001127649	55670	Hs.517400	NM_017929	ENSG00000215193	PEX26	PBD7A|PBD7B|PEX26M1T|Pex26pM1T	peroxisomal biogenesis factor 26	protein-coding
888	chr2	238482280	238485505	+	0	NA	intron (NR_033308, intron 4 of 4)	intron (NR_033308, intron 4 of 4)	8675	NM_015893	51052	Hs.247710	NM_015893	ENSG00000071677	PRLH	PRH|PRRP	prolactin releasing hormone	protein-coding
526	chr16	66582472	66587396	+	0	NA	promoter-TSS (NR_073520)	promoter-TSS (NR_073520)	-619	NM_004614	7084	Hs.512619	NM_004614	ENSG00000166548	TK2	MTDPS2|MTTK|PEOB3|SCA31	thymidine kinase 2, mitochondrial	protein-coding
134	chr5	135466471	135470207	+	0	NA	promoter-TSS (NM_005903)	promoter-TSS (NM_005903)	-195	NM_005903	4090	Hs.167700	NM_005903	ENSG00000113658	SMAD5	DWFC|JV5-1|MADH5	SMAD family member 5	protein-coding
364	chr6	27097375	27104691	+	0	NA	promoter-TSS (NM_021058)	promoter-TSS (NM_021058)	216	NM_021064	8969	Hs.51011	NM_021064	ENSG00000196787	HIST1H2AG	H2A.1b|H2A/p|H2AFP|H2AG|pH2A/f	histone cluster 1 H2A family member g	protein-coding
537	chr10	72330522	72341130	+	0	NA	Intergenic	MER72|LTR|ERV1	26718	NM_001083116	5551	Hs.2200	NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
771	chr19	10675087	10677731	+	0	NA	TTS (NM_001800)	TTS (NM_001800)	293	NM_023008	65095	Hs.709967	NM_023008	ENSG00000129347	KRI1	-	KRI1 homolog	protein-coding
411	chr19	44280377	44290662	+	0	NA	promoter-TSS (NM_002250)	promoter-TSS (NM_002250)	-110	NM_002250	3783	Hs.10082	NM_002250	ENSG00000104783	KCNN4	DHS2|IK|IK1|IKCA1|KCA4|KCa3.1|SK4|hIKCa1|hKCa4|hSK4	potassium calcium-activated channel subfamily N member 4	protein-coding
255	chr17	7337936	7341170	+	0	NA	exon (NM_001320444, exon 2 of 2)	exon (NM_001320444, exon 2 of 2)	761	NM_001320444	284114	Hs.655662	NM_178518	ENSG00000181284	TMEM102	CBAP	transmembrane protein 102	protein-coding
671	chr13	73668891	73672107	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	37569	NM_001730	688	Hs.508234	NM_001730	ENSG00000102554	KLF5	BTEB2|CKLF|IKLF	Kruppel like factor 5	protein-coding
397	chr19	14016427	14018435	+	0	NA	promoter-TSS (NM_024323)	promoter-TSS (NM_024323)	-453	NM_001345844	79173	Hs.143288	NM_024323	ENSG00000132016	C19orf57	-	chromosome 19 open reading frame 57	protein-coding
232	chr11	65777558	65785445	+	0	NA	TTS (NM_001323)	TTS (NM_001323)	2039	NM_001323	1474	Hs.139389	NM_001323	ENSG00000175315	CST6	-	cystatin E/M	protein-coding
973	chr16	30620204	30622736	+	0	NA	promoter-TSS (NR_104166)	promoter-TSS (NR_104166)	237	NM_138447	115509	Hs.454685	NM_138447	ENSG00000156853	ZNF689	TIPUH1	zinc finger protein 689	protein-coding
515	chr6	34623680	34627328	+	0	NA	intron (NM_024294, intron 1 of 4)	intron (NM_024294, intron 1 of 4)	-38427	NR_134625	101929243	Hs.643498	NR_134625	ENSG00000272288	LOC101929243	-	uncharacterized LOC101929243	ncRNA
421	chr7	75930903	75934898	+	0	NA	intron (NM_001540, intron 1 of 2)	CpG	1025	NM_001540	3315	Hs.520973	NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
178	chr17	40825760	40833097	+	0	NA	promoter-TSS (NM_024927)	promoter-TSS (NM_024927)	-380	NR_073573	79990	Hs.632251	NM_024927	ENSG00000068137	PLEKHH3	-	pleckstrin homology, MyTH4 and FERM domain containing H3	protein-coding
939	chr19	18482883	18492705	+	0	NA	Intergenic	Intergenic	-8976	NM_004864	9518	Hs.616962	NM_004864	ENSG00000130513	GDF15	GDF-15|MIC-1|MIC1|NAG-1|PDF|PLAB|PTGFB	growth differentiation factor 15	protein-coding
522	chr3	139250986	139255518	+	0	NA	intron (NM_001130992, intron 2 of 2)	intron (NM_001130992, intron 2 of 2)	5419	NM_001130992	5947	Hs.529571	NM_002899	ENSG00000114115	RBP1	CRABP-I|CRBP|CRBP1|CRBPI|RBPC	retinol binding protein 1	protein-coding
79	chr22	36447699	36449978	+	0	NA	Intergenic	Intergenic	-24253	NM_001349999	23543	Hs.282998	NM_014309	ENSG00000100320	RBFOX2	FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh	RNA binding fox-1 homolog 2	protein-coding
257	chr9	130888289	130892389	+	0	NA	promoter-TSS (NR_024425)	promoter-TSS (NR_024425)	128	NM_001256335	80142	Hs.495219	NM_025072	ENSG00000148334	PTGES2	C9orf15|GBF-1|GBF1|PGES2|mPGES-2	prostaglandin E synthase 2	protein-coding
132	chr21	32880033	32884012	+	0	NA	intron (NM_001353691, intron 1 of 29)	intron (NM_001353691, intron 1 of 29)	49378	NM_003253	7074	Hs.517228	NM_003253	ENSG00000156299	TIAM1	TIAM-1	T cell lymphoma invasion and metastasis 1	protein-coding
692	chrX	46836965	46840073	+	0	NA	intron (NM_014735, intron 1 of 10)	intron (NM_014735, intron 1 of 10)	66651	NM_014735	9767	Hs.371977	NM_014735	ENSG00000102221	JADE3	JADE-3|PHF16	jade family PHD finger 3	protein-coding
494	chr3	33339073	33343644	+	0	NA	intron (NM_001349322, intron 3 of 12)	intron (NM_001349322, intron 3 of 12)	22450	NR_146127	25827	Hs.475872	NM_012157	ENSG00000153558	FBXL2	FBL2|FBL3	F-box and leucine rich repeat protein 2	protein-coding
18	chr16	69138585	69142012	+	0	NA	intron (NM_138612, intron 1 of 3)	CpG	169	NM_138612	3038	Hs.592069	NM_005329	ENSG00000103044	HAS3	-	hyaluronan synthase 3	protein-coding
681	chr20	52530511	52533093	+	0	NA	Intergenic	Intergenic	-39554	NR_002189	391257	Hs.449977	NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
131	chr13	101033415	101036493	+	0	NA	intron (NM_000282, intron 19 of 23)	L1M5|LINE|L1	98315	NR_047686	100885777	Hs.662554	NR_047686		PCCA-AS1	-	PCCA antisense RNA 1	ncRNA
350	chr11	64070609	64075601	+	0	NA	promoter-TSS (NM_001282450)	promoter-TSS (NM_001282450)	105	NM_001282451	2101	Hs.110849	NM_004451	ENSG00000173153	ESRRA	ERR1|ERRa|ERRalpha|ESRL1|NR3B1	estrogen related receptor alpha	protein-coding
92	chr15	59223662	59227842	+	0	NA	non-coding (NR_135042, exon 1 of 19)	non-coding (NR_135042, exon 1 of 19)	123	NR_135043	79811	Hs.512932	NM_017968	ENSG00000137776	SLTM	Met	SAFB like transcription modulator	protein-coding
514	chr19	1179607	1185316	+	0	NA	Intergenic	AluSx1|SINE|Alu	-8179	NM_014963	22904	Hs.408708	NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
701	chr1	6294730	6297367	+	0	NA	promoter-TSS (NR_103534)	promoter-TSS (NR_103534)	-4	NM_012405	23463	Hs.515688	NM_012405	ENSG00000116237	ICMT	HSTE14|MST098|MSTP098|PCCMT|PCMT|PPMT	isoprenylcysteine carboxyl methyltransferase	protein-coding
14	chr9	38066762	38070887	+	0	NA	5' UTR (NM_003028, exon 1 of 6)	5' UTR (NM_003028, exon 1 of 6)	386	NM_003028	6461	Hs.521482	NM_003028	ENSG00000107338	SHB	bA3J10.2	SH2 domain containing adaptor protein B	protein-coding
820	chr7	151383273	151387004	+	0	NA	intron (NM_001040633, intron 3 of 15)	intron (NM_001040633, intron 3 of 15)	48262	NM_001304527	51422	Hs.647072	NM_016203	ENSG00000106617	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase AMP-activated non-catalytic subunit gamma 2	protein-coding
809	chr17	39947481	39951438	+	0	NA	Intergenic	Intergenic	-6439	NM_001352776	3728	Hs.514174	NM_002230	ENSG00000173801	JUP	CTNNG|DP3|DPIII|PDGB|PKGB	junction plakoglobin	protein-coding
162	chr11	73308110	73311581	+	0	NA	promoter-TSS (NM_001286051)	promoter-TSS (NM_001286051)	-611	NM_001286051	23201	Hs.475334	NM_015159	ENSG00000054965	FAM168A	KIAA0280|TCRP1	family with sequence similarity 168 member A	protein-coding
144	chr5	137547973	137549781	+	0	NA	exon (NM_004661, exon 1 of 16)	exon (NM_004661, exon 1 of 16)	155	NM_004661	8697	Hs.73625	NM_004661	ENSG00000094880	CDC23	ANAPC8|APC8|CUT23	cell division cycle 23	protein-coding
923	chr17	43322923	43326918	+	0	NA	promoter-TSS (NR_024434)	promoter-TSS (NR_024434)	-372	NR_110325	100133991	Hs.668927	NR_024434	ENSG00000267278	MAP3K14-AS1	-	MAP3K14 antisense RNA 1	ncRNA
93	chr1	156306211	156309439	+	0	NA	promoter-TSS (NR_130913)	promoter-TSS (NR_130913)	381	NR_036564	7203	Hs.491494	NM_005998	ENSG00000163468	CCT3	CCT-gamma|CCTG|PIG48|TCP-1-gamma|TRIC5	chaperonin containing TCP1 subunit 3	protein-coding
425	chr5	137672327	137675168	+	0	NA	promoter-TSS (NM_016605)	promoter-TSS (NM_016605)	43	NM_001350195	51307	Hs.54056	NM_016605	ENSG00000120709	FAM53C	C5orf6	family with sequence similarity 53 member C	protein-coding
627	chr2	227442535	227451815	+	0	NA	Intergenic	LTR16C|LTR|ERVL	76334	NR_049887	100847053		NR_049887	ENSG00000263363	MIR5702	-	microRNA 5702	ncRNA
98	chr4	143663477	143667090	+	0	NA	intron (NM_001101669, intron 1 of 25)	L1MEf|LINE|L1	102405	NM_001101669	8821	Hs.176376	NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
977	chr1	6548496	6553368	+	0	NA	promoter-TSS (NM_001042664)	promoter-TSS (NM_001042664)	-278	NM_001265594	57449	Hs.284232	NM_020631	ENSG00000171680	PLEKHG5	CMTRIC|DSMA4|GEF720|Syx|Tech	pleckstrin homology and RhoGEF domain containing G5	protein-coding
121	chr5	139675758	139683687	+	0	NA	intron (NM_002622, intron 2 of 3)	AluSz|SINE|Alu	2967	NM_002622	5201	Hs.483564	NM_002622	ENSG00000113068	PFDN1	PDF|PFD1	prefoldin subunit 1	protein-coding
795	chr18	47812772	47814926	+	0	NA	intron (NM_014593, intron 1 of 14)	CpG	843	NM_001101654	30827	Hs.180933	NM_014593	ENSG00000154832	CXXC1	2410002I16Rik|5830420C16Rik|CFP1|CGBP|HsT2645|PCCX1|PHF18|SPP1|ZCGPC1|hCGBP	CXXC finger protein 1	protein-coding
631	chr11	61733539	61741318	+	0	NA	Intergenic	L1M5|LINE|L1	-2296	NM_002032	2495	Hs.524910	NM_002032	ENSG00000167996	FTH1	FHC|FTH|FTHL6|HFE5|PIG15|PLIF	ferritin heavy chain 1	protein-coding
16	chr5	139046277	139050352	+	0	NA	intron (NM_001317203, intron 2 of 3)	intron (NM_001317203, intron 2 of 3)	-6711	NM_001317209	51523	Hs.189119	NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
706	chr8	145637886	145643326	+	0	NA	intron (NM_130849, intron 3 of 11)	intron (NM_130849, intron 3 of 11)	1311	NM_017767	55630	Hs.521934	NM_017767	ENSG00000147804	SLC39A4	AEZ|AWMS2|ZIP4	solute carrier family 39 member 4	protein-coding
343	chr11	66652736	66655941	+	0	NA	intron (NM_000920, intron 2 of 21)	intron (NM_000920, intron 2 of 21)	21002	NM_022172	5091	Hs.89890	NM_000920	ENSG00000173599	PC	PCB	pyruvate carboxylase	protein-coding
655	chr1	28762014	28765997	+	0	NA	promoter-TSS (NM_023923)	promoter-TSS (NM_023923)	-656	NM_023923	65979	Hs.225641	NM_023923	ENSG00000204138	PHACTR4	PPP1R124	phosphatase and actin regulator 4	protein-coding
378	chr10	126836863	126839262	+	0	NA	intron (NM_001290214, intron 1 of 10)	intron (NM_001290214, intron 1 of 10)	9625	NM_001321014	1488	Hs.501345	NM_001329	ENSG00000175029	CTBP2	-	C-terminal binding protein 2	protein-coding
648	chr17	40571677	40576437	+	0	NA	intron (NM_012232, intron 1 of 1)	CpG	1281	NM_012232	284119	Hs.437191	NM_012232	ENSG00000177469	CAVIN1	CAVIN|CGL4|FKSG13|PTRF|cavin-1	caveolae associated protein 1	protein-coding
872	chr19	1478077	1480456	+	0	NA	promoter-TSS (NM_152482)	promoter-TSS (NM_152482)	-38	NM_152482	148223	Hs.532840	NM_152482	ENSG00000119559	C19orf25	-	chromosome 19 open reading frame 25	protein-coding
312	chr4	30937355	30966092	+	0	NA	intron (NM_001173523, intron 2 of 2)	intron (NM_001173523, intron 2 of 2)	-221043	NR_125935	102723778	Hs.210739	NR_125935	ENSG00000251182	LINC02497	-	long intergenic non-protein coding RNA 2497	ncRNA
904	chr2	232534181	232540939	+	0	NA	Intergenic	Intergenic	-35675	NM_001099285	5757	Hs.459927	NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
393	chr9	114802657	114805557	+	0	NA	intron (NM_001282640, intron 17 of 17)	intron (NM_001282640, intron 17 of 17)	109727	NR_039814	100616114		NR_039814	ENSG00000266315	MIR4668	mir-4668	microRNA 4668	ncRNA
916	chr19	2028100	2036244	+	0	NA	Intergenic	Intergenic	-16470	NM_017797	55643	Hs.465543	NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
855	chr2	62998474	63003858	+	0	NA	intron (NM_001354213, intron 5 of 24)	intron (NM_001354213, intron 5 of 24)	67134	NM_001354217	23301	Hs.271667	NM_015252	ENSG00000115504	EHBP1	HPC12|NACSIN	EH domain binding protein 1	protein-coding
934	chr4	792303	794133	+	0	NA	intron (NM_006651, intron 2 of 3)	MER21A|LTR|ERVL	-17582	NR_036511	100129917	Hs.731755	NR_036511	ENSG00000249592	LOC100129917	-	uncharacterized LOC100129917	ncRNA
612	chr3	9435521	9442504	+	0	NA	promoter-TSS (NM_001349451)	promoter-TSS (NM_001349451)	166	NR_027007	440944	Hs.598958	NM_001013713	ENSG00000206573	THUMPD3-AS1	SETD5-AS1	THUMPD3 antisense RNA 1	ncRNA
951	chr9	38391314	38395973	+	0	NA	intron (NM_000692, intron 1 of 1)	intron (NM_000692, intron 1 of 1)	982	NM_000692	219	Hs.436219	NM_000692	ENSG00000137124	ALDH1B1	ALDH5|ALDHX	aldehyde dehydrogenase 1 family member B1	protein-coding
275	chr14	68929701	68936580	+	0	NA	intron (NM_002877, intron 9 of 10)	MIRb|SINE|MIR	162364	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
903	chr1	94772709	94777875	+	0	NA	Intergenic	L2|LINE|L2	-61976	NM_001328664	9411	Hs.483238	NM_004815	ENSG00000137962	ARHGAP29	PARG1	Rho GTPase activating protein 29	protein-coding
980	chr10	103811790	103819034	+	0	NA	intron (NM_024541, intron 1 of 25)	intron (NM_024541, intron 1 of 25)	520	NM_024541	79591	Hs.16004	NM_024541	ENSG00000120029	ARMH3	C10orf76	armadillo-like helical domain containing 3	protein-coding
101	chr12	66209663	66235703	+	0	NA	intron (NM_003484, intron 2 of 3)	intron (NM_003484, intron 2 of 3)	-1929	NR_026825	204010	Hs.558686	NR_026825	ENSG00000241749	RPSAP52	RPSA_17_1251	ribosomal protein SA pseudogene 52	pseudo
10	chr2	112374160	112377367	+	0	NA	Intergenic	Intergenic	-123025	NR_136163	541471	Hs.560805	NR_015395	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
686	chr6	84138775	84143381	+	0	NA	promoter-TSS (NM_002395)	promoter-TSS (NM_002395)	-140	NM_002395	4199	Hs.21160	NM_002395	ENSG00000065833	ME1	HUMNDME|MES	malic enzyme 1	protein-coding
318	chr17	61676927	61679378	+	0	NA	promoter-TSS (NM_016360)	promoter-TSS (NM_016360)	-79	NM_016360	51204	Hs.174134	NM_016360	ENSG00000136463	TACO1	CCDC44	translational activator of cytochrome c oxidase I	protein-coding
278	chr6	129980156	130015598	+	0	NA	intron (NM_033515, intron 1 of 14)	MIR3|SINE|MIR	33493	NM_033515	93663	Hs.486458	NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
633	chr2	10586504	10591952	+	0	NA	promoter-TSS (NM_002539)	promoter-TSS (NM_002539)	-548	NM_001287188	4953	Hs.467701	NM_002539	ENSG00000115758	ODC1	ODC	ornithine decarboxylase 1	protein-coding
437	chr16	69102305	69108982	+	0	NA	intron (NM_024562, intron 17 of 17)	intron (NM_024562, intron 17 of 17)	-33824	NM_001199280	3038	Hs.592069	NM_005329	ENSG00000103044	HAS3	-	hyaluronan synthase 3	protein-coding
645	chr19	49374199	49380371	+	0	NA	exon (NM_014330, exon 2 of 3)	exon (NM_014330, exon 2 of 3)	1636	NM_014330	23645	Hs.631593	NM_014330	ENSG00000087074	PPP1R15A	GADD34	protein phosphatase 1 regulatory subunit 15A	protein-coding
451	chr8	126437037	126447343	+	0	NA	promoter-TSS (NM_025195)	promoter-TSS (NM_025195)	-373	NM_025195	10221	Hs.444947	NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
731	chr10	100027758	100031531	+	0	NA	Intergenic	Intergenic	-1637	NM_032211	84171	Hs.306814	NM_032211	ENSG00000138131	LOXL4	LOXC	lysyl oxidase like 4	protein-coding
202	chr1	164733222	164738242	+	0	NA	intron (NM_001353131, intron 2 of 7)	intron (NM_001353131, intron 2 of 7)	8146	NR_038072	100505795	Hs.661039	NR_038072	ENSG00000233693	LOC100505795	-	uncharacterized LOC100505795	ncRNA
600	chr9	33875627	33877992	+	0	NA	intron (NM_017811, intron 1 of 4)	AluY|SINE|Alu	57553	NM_001282530	55833	Hs.493739	NM_018449	ENSG00000137073	UBAP2	UBAP-2	ubiquitin associated protein 2	protein-coding
49	chr15	99342469	99346283	+	0	NA	intron (NM_000875, intron 2 of 20)	intron (NM_000875, intron 2 of 20)	16721	NR_039864	100616432		NR_039864	ENSG00000264480	MIR4714	-	microRNA 4714	ncRNA
798	chr1	168387136	168390575	+	0	NA	intron (NR_037851, intron 2 of 3)	intron (NR_037851, intron 2 of 3)	3039	NR_037851	100505918	Hs.568494	NR_037851		LOC100505918	-	uncharacterized LOC100505918	ncRNA
860	chr6	43393718	43396794	+	0	NA	promoter-TSS (NR_146762)	promoter-TSS (NR_146762)	-36	NM_001198934	89845	Hs.55879	NM_033450	ENSG00000124574	ABCC10	EST182763|MRP7|SIMRP7	ATP binding cassette subfamily C member 10	protein-coding
195	chr16	28934859	28938541	+	0	NA	promoter-TSS (NM_024816)	promoter-TSS (NM_024816)	-168	NM_024816	79874	Hs.555978	NM_024816	ENSG00000177548	RABEP2	FRA	rabaptin, RAB GTPase binding effector protein 2	protein-coding
946	chr3	111592033	111595632	+	0	NA	intron (NM_001134439, intron 1 of 17)	intron (NM_001134439, intron 1 of 17)	15264	NM_001134439	90102	Hs.603252	NM_145753	ENSG00000144824	PHLDB2	LL5b|LL5beta	pleckstrin homology like domain family B member 2	protein-coding
965	chr12	66523403	66527415	+	0	NA	promoter-TSS (NM_032338)	promoter-TSS (NM_032338)	-876	NM_032338	84298	Hs.504820	NM_032338	ENSG00000139233	LLPH	C12orf31|hLLP	LLP homolog, long-term synaptic facilitation factor	protein-coding
616	chr10	103589215	103592133	+	0	NA	intron (NM_014591, intron 2 of 9)	(CACG)n|Simple_repeat|Simple_repeat	8937	NM_173194	30819	Hs.97044	NM_014591	ENSG00000120049	KCNIP2	KCHIP2	potassium voltage-gated channel interacting protein 2	protein-coding
608	chr1	27984260	27987757	+	0	NA	TTS (NR_151722)	TTS (NR_151722)	3225	NR_151722	111216282	Hs.297628	NR_151722	ENSG00000233975	LINC02574	-	long intergenic non-protein coding RNA 2574	ncRNA
858	chr9	130952422	130956591	+	0	NA	promoter-TSS (NM_001131017)	promoter-TSS (NM_001131017)	-123	NM_001257975	25792	Hs.212395	NM_012127	ENSG00000148337	CIZ1	LSFR1|NP94|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding
583	chr14	69243767	69249019	+	0	NA	Intergenic	L2a|LINE|L2	14238	NM_004926	677	Hs.85155	NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
250	chr9	75762175	75771763	+	0	NA	intron (NM_000700, intron 1 of 12)	intron (NM_000700, intron 1 of 12)	322	NM_000700	301	Hs.494173	NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
129	chr16	2768835	2774679	+	0	NA	Intergenic	Intergenic	-1205	NM_031948	83886	Hs.332878	NM_031948	ENSG00000172382	PRSS27	CAPH2|MPN	serine protease 27	protein-coding
535	chr7	25008079	25014719	+	0	NA	intron (NM_015550, intron 1 of 22)	MIR|SINE|MIR	8432	NM_015550	26031	Hs.520259	NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
498	chr7	79899765	79919449	+	0	NA	Intergenic	Intergenic	94148	NR_110075	101927269	Hs.583232	NR_110075		LOC101927269	-	uncharacterized LOC101927269	ncRNA
652	chr12	56650082	56653373	+	0	NA	intron (NM_173595, intron 1 of 27)	CpG	416	NM_173595	283373	Hs.524506	NM_173595	ENSG00000139645	ANKRD52	ANKRD33	ankyrin repeat domain 52	protein-coding
737	chr15	66794773	66799436	+	0	NA	promoter-TSS (NM_017975)	promoter-TSS (NM_017975)	89	NM_000968	6124	Hs.186350	NM_000968	ENSG00000174444	RPL4	L4	ribosomal protein L4	protein-coding
871	chr14	21570599	21577717	+	0	NA	Intergenic	MIRc|SINE|MIR	-1295	NM_001102454	51222	Hs.250493	NM_016423	ENSG00000165804	ZNF219	ZFP219	zinc finger protein 219	protein-coding
431	chr17	46701726	46705427	+	0	NA	exon (NM_024017, exon 1 of 2)	exon (NM_024017, exon 1 of 2)	259	NM_024017	3219	Hs.463350	NM_024017	ENSG00000170689	HOXB9	HOX-2.5|HOX2|HOX2E	homeobox B9	protein-coding
724	chr1	193089968	193093671	+	0	NA	intron (NM_024529, intron 1 of 16)	intron (NM_024529, intron 1 of 16)	731	NM_024529	79577	Hs.378996	NM_024529	ENSG00000134371	CDC73	C1orf28|FIHP|HPTJT|HRPT1|HRPT2|HYX	cell division cycle 73	protein-coding
760	chr14	54464781	54468713	+	0	NA	Intergenic	Intergenic	-43138	NM_130850	652	Hs.68879	NM_001202	ENSG00000125378	BMP4	BMP2B|BMP2B1|MCOPS6|OFC11|ZYME	bone morphogenetic protein 4	protein-coding
75	chr4	143765701	143769257	+	0	NA	5' UTR (NM_001331040, exon 1 of 26)	5' UTR (NM_001331040, exon 1 of 26)	209	NM_001101669	8821	Hs.176376	NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
400	chr1	202074015	202078378	+	0	NA	Intergenic	MIR3|SINE|MIR	-15773	NM_004767	9283	Hs.132049	NM_004767	ENSG00000170075	GPR37L1	ET(B)R-LP-2|ETBR-LP-2|ETBRLP2	G protein-coupled receptor 37 like 1	protein-coding
30	chr19	14357611	14360026	+	0	NA	Intergenic	Intergenic	-41821	NM_014921	22859	Hs.94229	NM_014921	ENSG00000072071	ADGRL1	CIRL1|CL1|LEC2|LPHN1	adhesion G protein-coupled receptor L1	protein-coding
707	chr8	28558461	28560857	+	0	NA	promoter-TSS (NR_126027)	promoter-TSS (NR_126027)	669	NM_001440	2137	Hs.491354	NM_001440	ENSG00000012232	EXTL3	BOTV|EXTL1L|EXTR1|ISDNA|REGR|RPR	exostosin like glycosyltransferase 3	protein-coding
287	chr2	112702613	112706715	+	0	NA	intron (NM_006343, intron 3 of 18)	AluSz|SINE|Alu	48473	NM_006343	10461	Hs.306178	NM_006343	ENSG00000153208	MERTK	MER|RP38|Tyro12|c-Eyk|c-mer	MER proto-oncogene, tyrosine kinase	protein-coding
404	chr1	44394049	44401664	+	0	NA	Intergenic	Intergenic	-1136	NM_001136215	9048	Hs.632404	NM_003976	ENSG00000117407	ARTN	ART|ENOVIN|EVN|NBN	artemin	protein-coding
482	chr9	139970683	139973264	+	0	NA	promoter-TSS (NM_207309)	promoter-TSS (NM_207309)	20	NM_207309	91373	Hs.142076	NM_207309	ENSG00000197355	UAP1L1	-	UDP-N-acetylglucosamine pyrophosphorylase 1 like 1	protein-coding
668	chr20	49153909	49160618	+	0	NA	intron (NM_001278618, intron 1 of 8)	intron (NM_001278618, intron 1 of 8)	30405	NM_001278618	5770	Hs.417549	NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding
489	chr13	37632062	37634521	+	0	NA	intron (NM_001014286, intron 1 of 25)	intron (NM_001014286, intron 1 of 25)	333	NM_001278482	55578	Hs.435815	NM_017569	ENSG00000102710	SUPT20H	C13|C13orf19|FAM48A|FP757|P38IP|SPT20	SPT20 homolog, SAGA complex component	protein-coding
170	chr10	102771880	102774068	+	0	NA	intron (NM_001195263, intron 11 of 16)	intron (NM_001195263, intron 11 of 16)	10720	NM_001318101	84445	Hs.523221	NM_032429	ENSG00000107816	LZTS2	LAPSER1	leucine zipper tumor suppressor 2	protein-coding
553	chr19	44203312	44206981	+	0	NA	Intergenic	AluSz|SINE|Alu	-15068	NM_019612	56269	Hs.515444	NM_019612	ENSG00000124449	IRGC	CINEMA|IFGGE|IRGC1|Iigp5|R30953_1	immunity related GTPase cinema	protein-coding
794	chr19	51865022	51872687	+	0	NA	intron (NM_001985, intron 1 of 5)	intron (NM_001985, intron 1 of 5)	818	NM_001985	2109	Hs.348531	NM_001985	ENSG00000105379	ETFB	FP585|MADD	electron transfer flavoprotein subunit beta	protein-coding
642	chr7	99100893	99103930	+	0	NA	promoter-TSS (NM_014569)	promoter-TSS (NM_014569)	144	NM_001318082	23660	Hs.110839	NM_014569	ENSG00000196652	ZKSCAN5	ZFP-95|ZFP95|ZNF914|ZSCAN37	zinc finger with KRAB and SCAN domains 5	protein-coding
210	chr2	182884651	182886117	+	0	NA	intron (NM_001080545, intron 2 of 4)	intron (NM_001080545, intron 2 of 4)	34833	NM_001261424	151242	Hs.10941	NM_001080545	ENSG00000150722	PPP1R1C	IPP5	protein phosphatase 1 regulatory inhibitor subunit 1C	protein-coding
864	chr1	155099746	155104212	+	0	NA	intron (NM_182685, intron 1 of 3)	intron (NM_182685, intron 1 of 3)	1630	NM_004428	1942	Hs.516664	NM_004428	ENSG00000169242	EFNA1	B61|ECKLG|EFL1|EPLG1|LERK-1|LERK1|TNFAIP4	ephrin A1	protein-coding
887	chr3	127840800	127844095	+	0	NA	exon (NM_003707, exon 1 of 11)	exon (NM_003707, exon 1 of 11)	224	NM_003707	8607	Hs.272822	NM_003707	ENSG00000175792	RUVBL1	ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A	RuvB like AAA ATPase 1	protein-coding
886	chr10	114709432	114720836	+	0	NA	intron (NM_001198530, intron 3 of 10)	intron (NM_001198530, intron 3 of 10)	5125	NM_001198529	6934	Hs.593995	NM_030756	ENSG00000148737	TCF7L2	TCF-4|TCF4	transcription factor 7 like 2	protein-coding
516	chr16	89624228	89635139	+	0	NA	3' UTR (NM_001243131, exon 7 of 7)	3' UTR (NM_001243131, exon 7 of 7)	1845	NR_002450	606500		NR_002450		SNORD68	HBII-202	small nucleolar RNA, C/D box 68	snoRNA
875	chr10	105652504	105658295	+	0	NA	intron (NM_024928, intron 7 of 9)	intron (NM_024928, intron 7 of 9)	22646	NM_024928	79991	Hs.62314	NM_024928	ENSG00000107960	STN1	AAF-44|AAF44|OBFC1|RPA-32|bA541N10.2	STN1, CST complex subunit	protein-coding
23	chr17	57783674	57786614	+	0	NA	promoter-TSS (NM_016077)	promoter-TSS (NM_016077)	-185	NM_016077	51651	Hs.12677	NM_016077	ENSG00000141378	PTRH2	BIT1|CFAP37|CGI-147|IMNEPD|PTH|PTH 2|PTH2	peptidyl-tRNA hydrolase 2	protein-coding
38	chr7	100322531	100324649	+	0	NA	Intergenic	MIRc|SINE|MIR	5167	NM_000799	2056	Hs.2303	NM_000799	ENSG00000130427	EPO	DBAL|ECYT5|EP|MVCD2	erythropoietin	protein-coding
122	chr16	89233011	89234729	+	0	NA	intron (NR_046200, intron 2 of 2)	intron (NR_046200, intron 2 of 2)	1079	NR_046200	400558	Hs.513818	NR_046200	ENSG00000205015	LINC02138	-	long intergenic non-protein coding RNA 2138	ncRNA
241	chr11	62598015	62601290	+	0	NA	promoter-TSS (NR_135084)	promoter-TSS (NR_135084)	-54	NR_135084	105369332		NR_135084	ENSG00000256690	LOC105369332	-	uncharacterized LOC105369332	ncRNA
319	chr16	57519307	57521043	+	0	NA	intron (NM_018110, intron 1 of 8)	intron (NM_018110, intron 1 of 8)	210	NM_018110	55715	Hs.279832	NM_018110	ENSG00000125170	DOK4	IRS-5|IRS5	docking protein 4	protein-coding
675	chr14	68654239	68663852	+	0	NA	intron (NM_002877, intron 7 of 10)	intron (NM_002877, intron 7 of 10)	368736	NM_001321815	5890	Hs.172587	NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
271	chr4	102152967	102154541	+	0	NA	intron (NM_000944, intron 1 of 13)	intron (NM_000944, intron 1 of 13)	8275	NR_107033	102465868		NR_107033	ENSG00000273882	MIR8066	hsa-mir-8066	microRNA 8066	ncRNA
859	chr1	212780385	212784144	+	0	NA	5' UTR (NM_001206488, exon 1 of 4)	5' UTR (NM_001206488, exon 1 of 4)	294	NM_001674	467	Hs.460	NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
693	chr9	140483209	140486339	+	0	NA	5' UTR (NM_138462, exon 1 of 6)	5' UTR (NM_138462, exon 1 of 6)	163	NM_138462	116225	Hs.128096	NM_138462	ENSG00000165724	ZMYND19	MIZIP	zinc finger MYND-type containing 19	protein-coding
445	chr16	57767781	57771070	+	0	NA	promoter-TSS (NM_005886)	promoter-TSS (NM_005886)	-235	NM_005886	10300	Hs.275675	NM_005886	ENSG00000140854	KATNB1	KAT|LIS6	katanin regulatory subunit B1	protein-coding
171	chr3	146219485	146226133	+	0	NA	Intergenic	MER41B|LTR|ERV1	-9031	NM_020359	57047	Hs.744414	NM_020359	ENSG00000163746	PLSCR2	-	phospholipid scramblase 2	protein-coding
831	chr17	46686165	46697465	+	0	NA	exon (NM_024016, exon 1 of 2)	exon (NM_024016, exon 1 of 2)	486	NM_024016	3218	Hs.514292	NM_024016	ENSG00000120068	HOXB8	HOX2|HOX2D|Hox-2.4	homeobox B8	protein-coding
352	chr10	105652504	105658295	+	0	NA	intron (NM_024928, intron 7 of 9)	intron (NM_024928, intron 7 of 9)	22646	NM_024928	79991	Hs.62314	NM_024928	ENSG00000107960	STN1	AAF-44|AAF44|OBFC1|RPA-32|bA541N10.2	STN1, CST complex subunit	protein-coding
941	chr7	134852804	134856775	+	0	NA	promoter-TSS (NM_001243755)	promoter-TSS (NM_001243755)	487	NM_001243752	78996	Hs.643113	NM_024033	ENSG00000122783	CYREN	C7orf49|MRI|MRI-2	cell cycle regulator of NHEJ	protein-coding
418	chr19	13370200	13373247	+	0	NA	intron (NM_000068, intron 26 of 46)	AluJr|SINE|Alu	110441	NM_004907	9592	Hs.501629	NM_004907	ENSG00000160888	IER2	ETR101	immediate early response 2	protein-coding
94	chr11	119204037	119206832	+	0	NA	5' UTR (NM_032015, exon 1 of 1)	5' UTR (NM_032015, exon 1 of 1)	224	NM_032015	79102	Hs.524084	NM_032015	ENSG00000173456	RNF26	-	ring finger protein 26	protein-coding
338	chr9	133602213	133606976	+	0	NA	intron (NM_007313, intron 1 of 10)	L1MEf|LINE|L1	15326	NM_007313	25	Hs.431048	NM_005157	ENSG00000097007	ABL1	ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl	ABL proto-oncogene 1, non-receptor tyrosine kinase	protein-coding
699	chr8	124406646	124410533	+	0	NA	exon (NM_014109, exon 1 of 28)	exon (NM_014109, exon 1 of 28)	116	NM_014109	29028	Hs.370834	NM_014109	ENSG00000156802	ATAD2	ANCCA|CT137|PRO2000	ATPase family, AAA domain containing 2	protein-coding
90	chr2	227662547	227667876	+	0	NA	intron (NM_001349069, intron 1 of 8)	intron (NM_001349069, intron 1 of 8)	336	NM_001349069	84236	Hs.471514	NM_032276	ENSG00000144468	RHBDD1	RHBDL4|RRP4	rhomboid domain containing 1	protein-coding
215	chr13	73897863	73902027	+	0	NA	Intergenic	Intergenic	-238436	NR_047009	100874155	Hs.672679	NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
379	chr7	134670237	134673414	+	0	NA	intron (NM_001345852, intron 1 of 9)	intron (NM_001345852, intron 1 of 9)	566	NM_001345851	340351	Hs.648616	NM_178563	ENSG00000146856	AGBL3	CCP3	ATP/GTP binding protein like 3	protein-coding
11	chr7	73586082	73590630	+	0	NA	promoter-TSS (NM_031992)	promoter-TSS (NM_031992)	-350	NM_022170	7458	Hs.520943	NM_022170	ENSG00000106682	EIF4H	WBSCR1|WSCR1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding
764	chr11	67158148	67160240	+	0	NA	promoter-TSS (NM_004584)	promoter-TSS (NM_004584)	-229	NM_004584	5883	Hs.655354	NM_004584	ENSG00000172613	RAD9A	RAD9	RAD9 checkpoint clamp component A	protein-coding
683	chr1	150548610	150553641	+	0	NA	intron (NM_001197320, intron 2 of 3)	intron (NM_001197320, intron 2 of 3)	1089	NM_001197320	4170	Hs.632486	NM_021960	ENSG00000143384	MCL1	BCL2L3|EAT|MCL1-ES|MCL1L|MCL1S|Mcl-1|TM|bcl2-L-3|mcl1/EAT	MCL1, BCL2 family apoptosis regulator	protein-coding
784	chr9	112258424	112262398	+	0	NA	intron (NM_001145368, intron 1 of 24)	GC_rich|Low_complexity|Low_complexity	182	NM_001145368	5774	Hs.436429	NM_002829	ENSG00000070159	PTPN3	PTP-H1|PTPH1	protein tyrosine phosphatase, non-receptor type 3	protein-coding
684	chr8	22240096	22242170	+	0	NA	intron (NM_001351656, intron 2 of 10)	intron (NM_001351656, intron 2 of 10)	-9210	NM_001351660	23516	Hs.491232	NM_015359	ENSG00000104635	SLC39A14	HMNDYT2|LZT-Hs4|NET34|ZIP14|cig19	solute carrier family 39 member 14	protein-coding
976	chr19	50378311	50383352	+	0	NA	promoter-TSS (NM_001098632)	promoter-TSS (NM_001098632)	149	NM_024682	79735	Hs.631587	NM_024682	ENSG00000104946	TBC1D17	-	TBC1 domain family member 17	protein-coding
168	chr22	19464481	19468040	+	0	NA	intron (NM_001035247, intron 1 of 11)	intron (NM_001035247, intron 1 of 11)	478	NM_005659	7353	Hs.474213	NM_005659	ENSG00000070010	UFD1	UFD1L	ubiquitin recognition factor in ER associated degradation 1	protein-coding
491	chr6	151644351	151650206	+	0	NA	intron (NM_144497, intron 1 of 2)	intron (NM_144497, intron 1 of 2)	612	NM_144497	9590	Hs.371240	NM_005100	ENSG00000131016	AKAP12	AKAP250|SSeCKS	A-kinase anchoring protein 12	protein-coding
544	chr16	30771623	30774898	+	0	NA	promoter-TSS (NM_001286572)	promoter-TSS (NM_001286572)	305	NM_001195620	90835	Hs.724010	NM_001014979	ENSG00000196118	CCDC189	C16orf93	coiled-coil domain containing 189	protein-coding
898	chr16	70507859	70511673	+	0	NA	intron (NM_145059, intron 20 of 23)	intron (NM_145059, intron 20 of 23)	21268	NM_145059	197258	Hs.7907	NM_145059	ENSG00000157353	FUK	1110046B12Rik	fucokinase	protein-coding
849	chr1	36105785	36109153	+	0	NA	promoter-TSS (NM_001199779)	promoter-TSS (NM_001199779)	-24	NM_002794	5690	Hs.471441	NM_002794	ENSG00000126067	PSMB2	HC7-I	proteasome subunit beta 2	protein-coding
329	chr3	49502307	49510016	+	0	NA	promoter-TSS (NM_001177643)	promoter-TSS (NM_001177643)	25	NM_001177643	1605	Hs.76111	NM_004393	ENSG00000173402	DAG1	156DAG|A3a|AGRNR|DAG|MDDGA9|MDDGC7|MDDGC9	dystroglycan 1	protein-coding
481	chr12	65841485	65846778	+	0	NA	intron (NM_001031679, intron 5 of 6)	intron (NM_001031679, intron 5 of 6)	106960	NR_135033	105369187	Hs.738044	NR_135033	ENSG00000250748	LOC105369187	-	uncharacterized LOC105369187	ncRNA
62	chr20	52388832	52392715	+	0	NA	Intergenic	Intergenic	101475	NR_002189	391257	Hs.449977	NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
356	chr2	232570038	232580996	+	0	NA	intron (NM_002823, intron 1 of 4)	CpG-16069	2282	NM_002823	5757	Hs.459927	NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
770	chr19	50378311	50383352	+	0	NA	promoter-TSS (NM_001098632)	promoter-TSS (NM_001098632)	149	NM_024682	79735	Hs.631587	NM_024682	ENSG00000104946	TBC1D17	-	TBC1 domain family member 17	protein-coding
348	chr2	224588477	224593273	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	111444	NR_110905	130340	Hs.632555	NM_178814	ENSG00000152056	AP1S3	PSORS15	adaptor related protein complex 1 subunit sigma 3	protein-coding
158	chr6	53222920	53226081	+	0	NA	Intergenic	CpG	-10523	NM_001242828	60481	Hs.520189	NM_021814	ENSG00000012660	ELOVL5	HELO1|SCA38|dJ483K16.1	ELOVL fatty acid elongase 5	protein-coding
783	chr1	84892354	84895834	+	0	NA	Intergenic	Tigger15a|DNA|TcMar-Tigger	20060	NM_058248	58511	Hs.129142	NM_021233	ENSG00000137976	DNASE2B	DLAD	deoxyribonuclease 2 beta	protein-coding
236	chr17	40818361	40821050	+	0	NA	TTS (NM_016437)	TTS (NM_016437)	8403	NR_073574	79990	Hs.632251	NM_024927	ENSG00000068137	PLEKHH3	-	pleckstrin homology, MyTH4 and FERM domain containing H3	protein-coding
430	chr17	80324256	80326487	+	0	NA	Intergenic	L1MEg|LINE|L1	-6782	NM_018949	2837	Hs.192720	NM_018949	ENSG00000181408	UTS2R	GPR14|UR-2-R|UTR|UTR2	urotensin 2 receptor	protein-coding
822	chr3	179321278	179323817	+	0	NA	promoter-TSS (NM_002492)	promoter-TSS (NM_002492)	-28	NM_002492	4711	Hs.730674	NM_002492	ENSG00000136521	NDUFB5	CISGDH|SGDH	NADH:ubiquinone oxidoreductase subunit B5	protein-coding
145	chr5	179496960	179499723	+	0	NA	intron (NM_018434, intron 1 of 8)	CpG	777	NM_018434	55819	Hs.484363	NM_018434	ENSG00000113269	RNF130	G1RZFP|GOLIATH|GP	ring finger protein 130	protein-coding
208	chr12	53364194	53366664	+	0	NA	Intergenic	Intergenic	-21779	NR_045962	3856	Hs.533782	NM_002273	ENSG00000170421	KRT8	CARD2|CK-8|CK8|CYK8|K2C8|K8|KO	keratin 8	protein-coding
832	chr19	46364775	46367463	+	0	NA	intron (NM_004819, intron 1 of 26)	L2b|LINE|L2	429	NM_004819	8189	Hs.515475	NM_004819	ENSG00000125755	SYMPK	SPK|SYM	symplekin	protein-coding
332	chr11	64006567	64016266	+	0	NA	TTS (NM_138689)	TTS (NM_138689)	1828	NM_057092	2286	Hs.227729	NM_004470	ENSG00000173486	FKBP2	FKBP-13|PPIase	FK506 binding protein 2	protein-coding
698	chr9	127529024	127535118	+	0	NA	intron (NM_001489, intron 1 of 9)	CpG	1518	NM_033334	2649	Hs.20131	NM_001489	ENSG00000148200	NR6A1	CT150|GCNF|GCNF1|NR61|RTR|hGCNF|hRTR	nuclear receptor subfamily 6 group A member 1	protein-coding
975	chr5	177538620	177542044	+	0	NA	promoter-TSS (NM_015111)	promoter-TSS (NM_015111)	-224	NM_015111	23138	Hs.101761	NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
216	chr7	99866581	99870768	+	0	NA	intron (NM_178831, intron 1 of 4)	intron (NM_178831, intron 1 of 4)	1181	NR_028038	352954	Hs.556063	NM_178831	ENSG00000239521	CASTOR3	GATS|STAG3OS	CASTOR family member 3	protein-coding
194	chr3	52085475	52092976	+	0	NA	intron (NM_001947, intron 1 of 2)	intron (NM_001947, intron 1 of 2)	1236	NM_001947	1849	Hs.591664	NM_001947	ENSG00000164086	DUSP7	MKPX|PYST2	dual specificity phosphatase 7	protein-coding
264	chr4	26567906	26574675	+	0	NA	Intergenic	AluY|SINE|Alu	-14256	NM_001292054	55296	Hs.479403	NM_018317	ENSG00000109680	TBC1D19	-	TBC1 domain family member 19	protein-coding
786	chr11	117013612	117017046	+	0	NA	intron (NR_110282, intron 1 of 2)	CpG	329	NM_001184747	5049	Hs.728488	NM_002572	ENSG00000168092	PAFAH1B2	HEL-S-303	platelet activating factor acetylhydrolase 1b catalytic subunit 2	protein-coding
842	chr6	30849339	30855614	+	0	NA	promoter-TSS (NM_001202523).2	promoter-TSS (NM_001202523).2	149	NM_013993	780	Hs.631988	NM_001954	ENSG00000204580	DDR1	CAK|CD167|DDR|EDDR1|HGK2|MCK10|NEP|NTRK4|PTK3|PTK3A|RTK6|TRKE	discoidin domain receptor tyrosine kinase 1	protein-coding
423	chr6	86172075	86176404	+	0	NA	intron (NM_001204813, intron 1 of 7)	L2|LINE|L2	14937	NM_002526	4907	Hs.153952	NM_002526	ENSG00000135318	NT5E	CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT	5'-nucleotidase ecto	protein-coding
31	chr1	192941126	192954186	+	0	NA	Intergenic	LTR7|LTR|ERV1	-30269	NR_126003	102724954	Hs.243488	NR_126003		LINC01032	-	long intergenic non-protein coding RNA 1032	ncRNA
740	chr1	40347914	40350090	+	0	NA	non-coding (NR_132401, exon 1 of 11)	non-coding (NR_132401, exon 1 of 11)	181	NR_132415	54802	Hs.356554	NM_017646	ENSG00000043514	TRIT1	COXPD35|GRO1|IPPT|IPT|IPTase|MOD5|hGRO1	tRNA isopentenyltransferase 1	protein-coding
293	chr1	45283911	45286769	+	0	NA	TTS (NM_001166292)	TTS (NM_001166292)	11186	NM_001136537	149478	Hs.632400	NM_001136537	ENSG00000222009	BTBD19	-	BTB domain containing 19	protein-coding
662	chr11	64576210	64578631	+	0	NA	exon (NM_130802, exon 2 of 10)	exon (NM_130802, exon 2 of 10)	615	NM_130801	4221	Hs.423348	NM_000244	ENSG00000133895	MEN1	MEAI|SCG2	menin 1	protein-coding
530	chr2	65091407	65093607	+	0	NA	Intergenic	CpG	-1742	NR_110224	101927438	Hs.580313	NR_110224	ENSG00000234572	LINC01800	-	long intergenic non-protein coding RNA 1800	ncRNA
657	chr1	29212851	29214945	+	0	NA	intron (NM_001166007, intron 1 of 17)	CpG	295	NM_001166005	2035	Hs.175437	NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
198	chr17	43137089	43140254	+	0	NA	promoter-TSS (NM_001321326)	promoter-TSS (NM_001321326)	4	NM_021079	4836	Hs.532790	NM_021079	ENSG00000136448	NMT1	NMT	N-myristoyltransferase 1	protein-coding
205	chr12	76087662	76123045	+	0	NA	Intergenic	Intergenic	-199935	NM_007043	11103	Hs.645517	NM_007043	ENSG00000111615	KRR1	HRB2|RIP-1	KRR1, small subunit processome component homolog	protein-coding
333	chr6	33556887	33559939	+	0	NA	intron (NR_027908, intron 1 of 1)	MIRc|SINE|MIR	2702	NR_027908	401253	Hs.520075	NM_207497	ENSG00000197251	LINC00336	C6orf227|NCRNA00336	long intergenic non-protein coding RNA 336	ncRNA
814	chr2	227635785	227639830	+	0	NA	intron (NM_005544, intron 1 of 1)	intron (NM_005544, intron 1 of 1)	25699	NM_005544	3667	Hs.471508	NM_005544	ENSG00000169047	IRS1	HIRS-1	insulin receptor substrate 1	protein-coding
413	chr16	1352151	1355106	+	0	NA	Intergenic	Intergenic	-5526	NM_194261	7329	Hs.302903	NM_003345	ENSG00000103275	UBE2I	C358B7.1|P18|UBC9	ubiquitin conjugating enzyme E2 I	protein-coding
579	chr3	45179263	45183191	+	0	NA	intron (NM_178181, intron 1 of 3)	intron (NM_178181, intron 1 of 3)	6687	NM_178181	64866	Hs.476093	NM_022842	ENSG00000163814	CDCP1	CD318|SIMA135|TRASK	CUB domain containing protein 1	protein-coding
67	chr12	13720979	13729067	+	0	NA	intron (NM_000834, intron 9 of 12)	intron (NM_000834, intron 9 of 12)	-195344	NR_036555	283422	Hs.448717	NM_182558	ENSG00000180861	LINC01559	C12orf36	long intergenic non-protein coding RNA 1559	ncRNA
314	chr17	76133222	76139126	+	0	NA	intron (NM_152468, intron 15 of 15)	AluJr|SINE|Alu	-6260	NM_001163075	100141515	Hs.633034	NM_001163075	ENSG00000187997	C17orf99	IL-40|UNQ464	chromosome 17 open reading frame 99	protein-coding
881	chr2	227645618	227649083	+	0	NA	intron (NM_005544, intron 1 of 1)	intron (NM_005544, intron 1 of 1)	16156	NM_005544	3667	Hs.471508	NM_005544	ENSG00000169047	IRS1	HIRS-1	insulin receptor substrate 1	protein-coding
667	chr3	48543631	48546965	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-3039	NM_001272066	51246	Hs.414579	NM_016479	ENSG00000164054	SHISA5	SCOTIN	shisa family member 5	protein-coding
670	chr7	73263843	73267436	+	0	NA	Intergenic	AluJr|SINE|Alu	-8784	NM_152559	155368	Hs.647042	NM_152559	ENSG00000165171	METTL27	WBSCR27	methyltransferase like 27	protein-coding
120	chr16	75141021	75146680	+	0	NA	3' UTR (NM_032268, exon 5 of 5)	3' UTR (NM_032268, exon 5 of 5)	6820	NM_153486	197257	Hs.380929	NM_153486	ENSG00000166816	LDHD	DLD	lactate dehydrogenase D	protein-coding
450	chr8	54855507	54862052	+	0	NA	intron (NM_170587, intron 3 of 5)	intron (NM_170587, intron 3 of 5)	65347	NR_104579	8601	Hs.368733	NM_003702	ENSG00000147509	RGS20	RGSZ1|ZGAP1|g(z)GAP|gz-GAP	regulator of G protein signaling 20	protein-coding
765	chr19	14472877	14476182	+	0	NA	intron (NR_134908, intron 1 of 3)	intron (NR_134908, intron 1 of 3)	273	NR_134908	105372288	Hs.628463	NR_134908	ENSG00000266913	LINC01841	-	long intergenic non-protein coding RNA 1841	ncRNA
51	chr1	153957241	153960423	+	0	NA	promoter-TSS (NM_002870)	promoter-TSS (NM_002870)	21	NM_002870	5872	Hs.151536	NM_002870	ENSG00000143545	RAB13	GIG4	RAB13, member RAS oncogene family	protein-coding
729	chr2	226977573	227004136	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-16656	NR_046102	646736	Hs.712836	NR_046102		LOC646736	-	uncharacterized LOC646736	ncRNA
340	chr17	811554	815111	+	0	NA	intron (NR_135633, intron 1 of 1)	intron (NR_135633, intron 1 of 1)	460	NR_135633	101927727	Hs.666198	NR_135633	ENSG00000262003	LOC101927727	-	uncharacterized LOC101927727	ncRNA
383	chr16	75283810	75288842	+	0	NA	promoter-TSS (NM_014567)	promoter-TSS (NM_014567)	-772	NM_014567	9564	Hs.479747	NM_014567	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	BCAR1, Cas family scaffold protein	protein-coding
387	chr7	89840029	89842895	+	0	NA	promoter-TSS (NR_110029)	promoter-TSS (NR_110029)	288	NM_001040665	261729	Hs.489051	NM_152999	ENSG00000157214	STEAP2	IPCA1|PCANAP1|PUMPCn|STAMP1|STMP	STEAP2 metalloreductase	protein-coding
567	chr14	91579140	91582679	+	0	NA	promoter-TSS (NM_001286471)	promoter-TSS (NM_001286471)	-70	NM_001102367	80017	Hs.309849	NM_024952	ENSG00000133943	DGLUCY	C14orf159	D-glutamate cyclase	protein-coding
143	chr10	114242893	114244815	+	0	NA	intron (NM_145206, intron 3 of 7)	intron (NM_145206, intron 3 of 7)	-36550	NM_001351082	64429	Hs.196990	NM_022494	ENSG00000023041	ZDHHC6	DHHC-6|ZNF376	zinc finger DHHC-type containing 6	protein-coding
76	chr2	74006051	74008047	+	0	NA	exon (NM_003584, exon 1 of 9)	exon (NM_003584, exon 1 of 9)	235	NM_003584	8446	Hs.14611	NM_003584	ENSG00000144048	DUSP11	PIR1	dual specificity phosphatase 11	protein-coding
217	chr19	4790811	4793239	+	0	NA	exon (NM_018708, exon 1 of 1)	exon (NM_018708, exon 1 of 1)	297	NM_018708	55527	Hs.515082	NM_018708	ENSG00000141965	FEM1A	EPRAP	fem-1 homolog A	protein-coding
467	chr1	43830756	43835425	+	0	NA	intron (NM_001256401, intron 1 of 6)	intron (NM_001256401, intron 1 of 6)	319	NM_001256399	64834	Hs.25597	NM_022821	ENSG00000066322	ELOVL1	CGI-88|Ssc1	ELOVL fatty acid elongase 1	protein-coding
769	chr1	206858122	206860812	+	0	NA	intron (NM_032960, intron 1 of 9)	CpG	1102	NM_032960	9261	Hs.643566	NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	mitogen-activated protein kinase-activated protein kinase 2	protein-coding
166	chr11	65768434	65771593	+	0	NA	promoter-TSS (NM_001242481)	promoter-TSS (NM_001242481)	-376	NM_001242481	84285	Hs.425178	NM_032325	ENSG00000175376	EIF1AD	haponin	eukaryotic translation initiation factor 1A domain containing	protein-coding
639	chr13	107123530	107126302	+	0	NA	Intergenic	Charlie4a|DNA|hAT-Charlie	62472	NM_004093	1948	Hs.149239	NM_004093	ENSG00000125266	EFNB2	EPLG5|HTKL|Htk-L|LERK5	ephrin B2	protein-coding
270	chr20	30281439	30288544	+	0	NA	intron (NR_134257, intron 1 of 2)	MIRb|SINE|MIR	-24319	NR_131907	103021294		NR_131907	ENSG00000281376	ABALON	INXS	apoptotic BCL2L1-antisense long non-coding RNA	ncRNA
317	chr14	69279559	69288327	+	0	NA	Intergenic	Intergenic	-20983	NM_001244701	677	Hs.85155	NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
251	chr1	153641481	153645631	+	0	NA	promoter-TSS (NM_001267809)	promoter-TSS (NM_001267809)	-52	NM_001267809	3608	Hs.75117	NM_004515	ENSG00000143621	ILF2	NF45|PRO3063	interleukin enhancer binding factor 2	protein-coding
812	chr8	95730155	95733982	+	0	NA	promoter-TSS (NM_181787)	promoter-TSS (NM_181787)	-35	NM_181787	286148	Hs.567828	NM_181787	ENSG00000156162	DPY19L4	-	dpy-19 like 4	protein-coding
995	chr11	60927137	60931012	+	0	NA	promoter-TSS (NM_017966)	promoter-TSS (NM_017966)	-158	NM_017966	55048	Hs.523715	NM_017966	ENSG00000167987	VPS37C	-	VPS37C, ESCRT-I subunit	protein-coding
77	chr1	149898358	149901559	+	0	NA	TTS (NM_181873)	TTS (NM_181873)	186	NM_005850	10262	Hs.516160	NM_005850	ENSG00000143368	SF3B4	AFD1|Hsh49|SAP49|SF3b49	splicing factor 3b subunit 4	protein-coding
848	chr17	80248967	80251705	+	0	NA	intron (NR_135639, intron 1 of 1)	CpG	354	NR_135639	101929511	Hs.147682	NR_135639	ENSG00000265692	LINC01970	-	long intergenic non-protein coding RNA 1970	ncRNA
346	chr6	26328089	26332092	+	0	NA	Intergenic	Intergenic	-35297	NM_001197249	11118	Hs.376046	NM_007047	ENSG00000186470	BTN3A2	BT3.2|BTF4|BTN3.2|CD277	butyrophilin subfamily 3 member A2	protein-coding
845	chr10	114132666	114157165	+	0	NA	intron (NM_016234, intron 1 of 20)	MIR|SINE|MIR	8959	NM_016234	51703	Hs.11638	NM_016234	ENSG00000197142	ACSL5	ACS2|ACS5|FACL5	acyl-CoA synthetase long chain family member 5	protein-coding
775	chr8	75230716	75234974	+	0	NA	intron (NM_020647, intron 1 of 5)	CpG	751	NM_020647	56704	Hs.657367	NM_020647	ENSG00000104369	JPH1	CMT2K|JP-1|JP1	junctophilin 1	protein-coding
118	chr17	74782462	74784941	+	0	NA	Intergenic	Intergenic	-11425	NR_110837	101928514	Hs.617206	NR_110837	ENSG00000267065	LINC02080	-	long intergenic non-protein coding RNA 2080	ncRNA
710	chr3	124596064	124599340	+	0	NA	intron (NM_001354764, intron 1 of 14)	intron (NM_001354764, intron 1 of 14)	8450	NM_002213	3693	Hs.13155	NM_002213	ENSG00000082781	ITGB5	-	integrin subunit beta 5	protein-coding
335	chr16	30004714	30008852	+	0	NA	promoter-TSS (NM_001304562)	promoter-TSS (NM_001304562)	634	NM_003609	8479	Hs.567370	NM_003609	ENSG00000149929	HIRIP3	-	HIRA interacting protein 3	protein-coding
991	chr12	53892610	53897339	+	0	NA	promoter-TSS (NM_134324)	promoter-TSS (NM_134324)	269	NM_134323	6895	Hs.326	NM_004178	ENSG00000139546	TARBP2	LOQS|TRBP|TRBP1|TRBP2	TARBP2, RISC loading complex RNA binding subunit	protein-coding
983	chr14	23397156	23401210	+	0	NA	promoter-TSS (NM_001282954)	promoter-TSS (NM_001282954)	365	NR_110002	101926933	Hs.727321	NR_110002	ENSG00000257285	LOC101926933	-	uncharacterized LOC101926933	ncRNA
233	chr2	162162723	162166280	+	0	NA	promoter-TSS (NM_005805)	promoter-TSS (NM_005805)	-285	NM_005805	10213	Hs.740477	NM_005805	ENSG00000115233	PSMD14	PAD1|POH1|RPN11	proteasome 26S subunit, non-ATPase 14	protein-coding
644	chr7	139469503	139473040	+	0	NA	intron (NM_001113239, intron 1 of 14)	intron (NM_001113239, intron 1 of 14)	6422	NM_001113239	28996	Hs.731417	NM_022740	ENSG00000064393	HIPK2	PRO0593	homeodomain interacting protein kinase 2	protein-coding
602	chr12	66273936	66292160	+	0	NA	intron (NM_003483, intron 3 of 4)	intron (NM_003483, intron 3 of 4)	-7101	NM_001292024	100129940	Hs.685856	NM_001292023	ENSG00000197301	LOC100129940	-	uncharacterized LOC100129940	protein-coding
541	chr6	31830452	31833048	+	0	NA	intron (NM_025257, intron 20 of 20).7	MIR|SINE|MIR	-1041	NM_000434	4758	Hs.520037	NM_000434	ENSG00000204386	NEU1	NANH|NEU|SIAL1	neuraminidase 1	protein-coding
505	chr6	28804842	28808331	+	0	NA	Intergenic	Intergenic	24868	NR_033379	401242	Hs.448285	NR_033379	ENSG00000225595	LINC01623	-	long intergenic non-protein coding RNA 1623	ncRNA
562	chr12	56650082	56653373	+	0	NA	intron (NM_173595, intron 1 of 27)	CpG	416	NM_173595	283373	Hs.524506	NM_173595	ENSG00000139645	ANKRD52	ANKRD33	ankyrin repeat domain 52	protein-coding
189	chr3	48955017	48958020	+	0	NA	exon (NM_001123040, exon 1 of 1)	exon (NM_001123040, exon 1 of 1)	265	NM_001349223	10425	Hs.633601	NM_006321	ENSG00000177479	ARIH2	ARI2|TRIAD1	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding
534	chr3	45159917	45169591	+	0	NA	intron (NM_178181, intron 1 of 3)	intron (NM_178181, intron 1 of 3)	23160	NM_178181	64866	Hs.476093	NM_022842	ENSG00000163814	CDCP1	CD318|SIMA135|TRASK	CUB domain containing protein 1	protein-coding
157	chr7	74023484	74027920	+	0	NA	Intergenic	AluY|SINE|Alu	-46289	NM_001280800	2969	Hs.647041	NM_001518	ENSG00000263001	GTF2I	BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6	general transcription factor IIi	protein-coding
184	chr19	39934713	39937422	+	0	NA	promoter-TSS (NM_001130824)	promoter-TSS (NM_001130824)	-119	NM_001111020	6829	Hs.631604	NM_003169	ENSG00000196235	SUPT5H	SPT5|SPT5H|Tat-CT1	SPT5 homolog, DSIF elongation factor subunit	protein-coding
398	chr11	6339271	6344193	+	0	NA	promoter-TSS (NM_145040)	promoter-TSS (NM_145040)	8	NM_145040	112464	Hs.434044	NM_145040	ENSG00000170955	CAVIN3	HSRBC|PRKCDBP|SRBC|cavin-3	caveolae associated protein 3	protein-coding
501	chr7	101767476	101769556	+	0	NA	intron (NM_001913, intron 8 of 22)	intron (NM_001913, intron 8 of 22)	-159837	NM_020979	10603	Hs.489448	NM_020979	ENSG00000160999	SH2B2	APS	SH2B adaptor protein 2	protein-coding
258	chr16	19429217	19432272	+	0	NA	intron (NM_001261841, intron 1 of 21)	AluY|SINE|Alu	1726	NM_001261841	79838	Hs.115838	NM_024780	ENSG00000103534	TMC5	-	transmembrane channel like 5	protein-coding
305	chr14	69250184	69265856	+	0	NA	intron (NM_001244701, intron 2 of 2)	intron (NM_001244701, intron 2 of 2)	2611	NM_004926	677	Hs.85155	NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
3	chr17	73509862	73514580	+	0	NA	promoter-TSS (NM_207346)	promoter-TSS (NM_207346)	-388	NM_207346	283989	Hs.378501	NM_207346	ENSG00000182173	TSEN54	PCH2A|PCH4|PCH5|SEN54L|sen54	tRNA splicing endonuclease subunit 54	protein-coding
767	chr16	69744187	69746966	+	0	NA	intron (NM_001286137, intron 3 of 3)	AluSz|SINE|Alu	-2998	NR_145753	109617018		NR_145753		SNORD13H	-	small nucleolar RNA, C/D box 13H	snoRNA
156	chr6	28804842	28808331	+	0	NA	Intergenic	Intergenic	24868	NR_033379	401242	Hs.448285	NR_033379	ENSG00000225595	LINC01623	-	long intergenic non-protein coding RNA 1623	ncRNA
276	chr5	115274455	115277993	+	0	NA	Intergenic	Intergenic	-21927	NM_173800	206338	Hs.98288	NM_173800	ENSG00000172901	LVRN	APQ|AQPEP|TAQPEP	laeverin	protein-coding
457	chr19	14016427	14018435	+	0	NA	promoter-TSS (NM_024323)	promoter-TSS (NM_024323)	-453	NM_001345844	79173	Hs.143288	NM_024323	ENSG00000132016	C19orf57	-	chromosome 19 open reading frame 57	protein-coding
295	chr12	76410492	76427782	+	0	NA	TTS (NM_007350)	TTS (NM_007350)	6419	NM_007350	22822	Hs.602085	NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
412	chr9	99435957	99438830	+	0	NA	Intergenic	Intergenic	-19794	NM_153698	195827	Hs.44640	NM_153698	ENSG00000158122	AAED1	C9orf21	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding
891	chr15	74711567	74718389	+	0	NA	intron (NM_001146029, intron 1 of 12)	intron (NM_001146029, intron 1 of 12)	11067	NM_001146030	8482	Hs.24640	NM_003612	ENSG00000138623	SEMA7A	CD108|CDw108|H-SEMA-K1|H-Sema-L|JMH|SEMAK1|SEMAL	semaphorin 7A (John Milton Hagen blood group)	protein-coding
854	chr2	227617697	227628770	+	0	NA	intron (NM_005544, intron 1 of 1)	intron (NM_005544, intron 1 of 1)	40273	NM_005544	3667	Hs.471508	NM_005544	ENSG00000169047	IRS1	HIRS-1	insulin receptor substrate 1	protein-coding
78	chr19	5677787	5682484	+	0	NA	promoter-TSS (NM_001267868)	promoter-TSS (NM_001267868)	-641	NM_001267871	374875	Hs.631840	NM_198533	ENSG00000167733	HSD11B1L	11-DH3|11-beta-HSD3|HSD3|SCDR10|SCDR10B|SDR26C2	hydroxysteroid 11-beta dehydrogenase 1 like	protein-coding
999	chr10	121630485	121633991	+	0	NA	5' UTR (NM_024834, exon 1 of 16)	5' UTR (NM_024834, exon 1 of 16)	157	NM_001256378	79892	Hs.124246	NM_024834	ENSG00000197771	MCMBP	C10orf119|MCM-BP	minichromosome maintenance complex binding protein	protein-coding
45	chr7	131578751	131582257	+	0	NA	Intergenic	Intergenic	-14475	NR_110836	101928782	Hs.571369	NR_110836	ENSG00000224865	LOC101928782	-	uncharacterized LOC101928782	ncRNA
302	chr9	139937248	139942081	+	0	NA	intron (NM_015392, intron 1 of 8)	intron (NM_015392, intron 1 of 8)	1012	NM_015392	56654	Hs.719906	NM_015392	ENSG00000107281	NPDC1	CAB|CAB-|CAB-1|CAB1|NPDC-1	neural proliferation, differentiation and control 1	protein-coding
310	chr17	79649330	79652686	+	0	NA	promoter-TSS (NM_001329609)	promoter-TSS (NM_001329609)	46	NM_004712	9146	Hs.661056	NM_004712	ENSG00000185359	HGS	HRS	hepatocyte growth factor-regulated tyrosine kinase substrate	protein-coding
732	chr8	30012601	30015662	+	0	NA	intron (NM_006571, intron 1 of 6)	CpG	318	NM_006571	10671	Hs.158427	NM_006571	ENSG00000104671	DCTN6	WS-3|WS3|p27	dynactin subunit 6	protein-coding
240	chr20	34670945	34676346	+	0	NA	Intergenic	Intergenic	-5781	NM_001258331	2036	Hs.437422	NM_012156	ENSG00000088367	EPB41L1	4.1N|MRD11	erythrocyte membrane protein band 4.1 like 1	protein-coding
970	chr7	107382398	107385761	+	0	NA	promoter-TSS (NM_024814)	promoter-TSS (NM_024814)	-2	NR_144536	101927974	Hs.432792	NR_144536	ENSG00000241764	LOC101927974	-	uncharacterized LOC101927974	ncRNA
818	chr13	101084594	101088930	+	0	NA	intron (NM_001352611, intron 19 of 21)	intron (NM_001352611, intron 19 of 21)	46507	NR_047686	100885777	Hs.662554	NR_047686		PCCA-AS1	-	PCCA antisense RNA 1	ncRNA
228	chr1	8963004	8964528	+	0	NA	Intergenic	MER21A|LTR|ERVL	24872	NR_038351	100505975	Hs.429843	NR_038351	ENSG00000230679	ENO1-AS1	-	ENO1 antisense RNA 1	ncRNA
634	chr4	123841841	123845346	+	0	NA	promoter-TSS (NM_145207)	promoter-TSS (NM_145207)	168	NM_007083	11162	Hs.558459	NM_007083	ENSG00000170917	NUDT6	ASFGF2|FGF-AS|FGF2AS|GFG-1|GFG1	nudix hydrolase 6	protein-coding
32	chr13	97900450	97934400	+	0	NA	intron (NM_001306070, intron 1 of 7)	intron (NM_001306070, intron 1 of 7)	42875	NM_144778	10150	Hs.657347	NM_144778	ENSG00000139793	MBNL2	MBLL|MBLL39|PRO2032	muscleblind like splicing regulator 2	protein-coding
344	chr3	156844166	156850397	+	0	NA	Intergenic	Intergenic	-6490	NR_034007	339894	Hs.478050	NR_034007	ENSG00000243629	LINC00880	-	long intergenic non-protein coding RNA 880	ncRNA
996	chr9	33288025	33292579	+	0	NA	promoter-TSS (NM_147134)	promoter-TSS (NM_147134)	-113	NM_147134	4799	Hs.413074	NM_002504	ENSG00000086102	NFX1	NFX2|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding
735	chr8	102169003	102173199	+	0	NA	Intergenic	Intergenic	46859	NM_001267708	51123	Hs.374485	NM_016096	ENSG00000120963	ZNF706	HSPC038|PNAS-106|PNAS-113	zinc finger protein 706	protein-coding
269	chr7	2442552	2444855	+	0	NA	intron (NM_018641, intron 1 of 1)	CpG	508	NM_018641	55501	Hs.288853	NM_018641	ENSG00000136213	CHST12	C4S-2|C4ST-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding
433	chr1	27666570	27671118	+	0	NA	intron (NM_001193308, intron 1 of 14)	intron (NM_001193308, intron 1 of 14)	361	NM_001193308	84958	Hs.469175	NM_032872	ENSG00000142765	SYTL1	JFC1|SLP1	synaptotagmin like 1	protein-coding
152	chr1	21057925	21061369	+	0	NA	promoter-TSS (NM_001103161)	promoter-TSS (NM_001103161)	-514	NM_001103161	400745	Hs.591522	NM_001103160	ENSG00000189410	SH2D5	-	SH2 domain containing 5	protein-coding
790	chr10	114161787	114166605	+	0	NA	intron (NM_203379, intron 3 of 20)	intron (NM_203379, intron 3 of 20)	28240	NM_016234	51703	Hs.11638	NM_016234	ENSG00000197142	ACSL5	ACS2|ACS5|FACL5	acyl-CoA synthetase long chain family member 5	protein-coding
694	chr17	62688404	62692891	+	0	NA	Intergenic	L3|LINE|CR1	-32261	NM_022739	64750	Hs.515011	NM_022739	ENSG00000108854	SMURF2	-	SMAD specific E3 ubiquitin protein ligase 2	protein-coding
773	chr10	28463995	28478267	+	0	NA	intron (NR_134518, intron 2 of 16)	L1ME3B|LINE|L1	99895	NM_173496	143098	Hs.499159	NM_173496	ENSG00000150054	MPP7	-	membrane palmitoylated protein 7	protein-coding
687	chr19	49003797	49005733	+	0	NA	exon (NM_001080434, exon 9 of 16)	exon (NM_001080434, exon 9 of 16)	11681	NM_001080434	114783	Hs.207426	NM_001080434	ENSG00000142235	LMTK3	LMR3|PPP1R101|TYKLM3	lemur tyrosine kinase 3	protein-coding
74	chr7	100200421	100203527	+	0	NA	promoter-TSS (NR_038910)	promoter-TSS (NR_038910)	-313	NR_038910	100129845	Hs.714123	NR_038910	ENSG00000224729	PCOLCE-AS1	-	PCOLCE antisense RNA 1	ncRNA
559	chr6	30844631	30847120	+	0	NA	Intergenic	Intergenic	-4515	NM_001297652	780	Hs.631988	NM_001954	ENSG00000204580	DDR1	CAK|CD167|DDR|EDDR1|HGK2|MCK10|NEP|NTRK4|PTK3|PTK3A|RTK6|TRKE	discoidin domain receptor tyrosine kinase 1	protein-coding
669	chr20	34202539	34206675	+	0	NA	intron (NM_003116, intron 1 of 11)	AluSp|SINE|Alu	801	NM_001317931	6676	Hs.123159	NM_003116	ENSG00000061656	SPAG4	CT127|SUN4	sperm associated antigen 4	protein-coding
797	chr11	70114745	70118162	+	0	NA	promoter-TSS (NM_003626)	promoter-TSS (NM_003626)	-353	NM_003626	8500	Hs.530749	NM_003626	ENSG00000131626	PPFIA1	LIP.1|LIP1|LIPRIN	PTPRF interacting protein alpha 1	protein-coding
919	chr11	125493959	125498106	+	0	NA	promoter-TSS (NM_001274)	promoter-TSS (NM_001274)	-87	NM_001330428	1111	Hs.24529	NM_001274	ENSG00000149554	CHEK1	CHK1	checkpoint kinase 1	protein-coding
1000	chr10	17696285	17701494	+	0	NA	intron (NM_001324286, intron 1 of 10)	MER50B|LTR|ERV1	12765	NM_001324283	8027	Hs.335391	NM_003473	ENSG00000136738	STAM	STAM-1|STAM1	signal transducing adaptor molecule	protein-coding
136	chr19	12831569	12835370	+	0	NA	promoter-TSS (NM_013433)	promoter-TSS (NM_013433)	-7	NM_001136196	30000	Hs.416049	NM_013433	ENSG00000105576	TNPO2	IPO3|KPNB2B|TRN2	transportin 2	protein-coding
828	chr12	1798679	1802048	+	0	NA	intron (NM_024551, intron 1 of 7)	CpG	116	NM_024551	79602	Hs.371642	NM_024551	ENSG00000006831	ADIPOR2	ACDCR2|PAQR2	adiponectin receptor 2	protein-coding
242	chr3	111576755	111580709	+	0	NA	intron (NM_001134439, intron 1 of 17)	CpG	164	NM_001134439	90102	Hs.603252	NM_145753	ENSG00000144824	PHLDB2	LL5b|LL5beta	pleckstrin homology like domain family B member 2	protein-coding
924	chr16	4319958	4324994	+	0	NA	intron (NM_003223, intron 1 of 6)	CpG	525	NM_003223	7023	Hs.513305	NM_003223	ENSG00000090447	TFAP4	AP-4|bHLHc41	transcription factor AP-4	protein-coding
119	chr19	7980789	7987266	+	0	NA	TTS (NM_001195259)	TTS (NM_001195259)	-1167	NM_003083	6618	Hs.631860	NM_003083	ENSG00000104976	SNAPC2	PTFDELTA|SNAP45	small nuclear RNA activating complex polypeptide 2	protein-coding
943	chr9	132538505	132540530	+	0	NA	Intergenic	Intergenic	-24173	NM_004878	9536	Hs.146688	NM_004878	ENSG00000148344	PTGES	MGST-IV|MGST1-L1|MGST1L1|MPGES|PGES|PIG12|PP102|PP1294|TP53I12|mPGES-1	prostaglandin E synthase	protein-coding
330	chr2	26233655	26236398	+	0	NA	Intergenic	Intergenic	-21703	NM_016131	10890	Hs.467960	NM_016131	ENSG00000084733	RAB10	-	RAB10, member RAS oncogene family	protein-coding
485	chr10	112325868	112329833	+	0	NA	intron (NM_005445, intron 1 of 28)	CpG	401	NM_005445	9126	Hs.24485	NM_005445	ENSG00000108055	SMC3	BAM|BMH|CDLS3|CSPG6|HCAP|SMC3L1	structural maintenance of chromosomes 3	protein-coding
484	chr6	27869856	27871589	+	0	NA	Intergenic	tRNA-Gly-GGY|tRNA|tRNA	9452	NM_033057	81697	Hs.307111	NM_033057	ENSG00000168131	OR2B2	OR2B2Q|OR2B9|OR6-1|dJ193B12.4|hs6M1-10	olfactory receptor family 2 subfamily B member 2	protein-coding
97	chr12	65880159	65897562	+	0	NA	intron (NR_120431, intron 3 of 3)	intron (NR_120431, intron 3 of 3)	62231	NR_135033	105369187	Hs.738044	NR_135033	ENSG00000250748	LOC105369187	-	uncharacterized LOC105369187	ncRNA
984	chr5	179049488	179053343	+	0	NA	promoter-TSS (NM_005520)	promoter-TSS (NM_005520)	-693	NM_005520	3187	Hs.604001	NM_005520	ENSG00000169045	HNRNPH1	HNRPH|HNRPH1|hnRNPH	heterogeneous nuclear ribonucleoprotein H1	protein-coding
817	chr4	75607171	75609323	+	0	NA	Intergenic	L1MA2|LINE|L1	111649	NM_001729	685	Hs.591704	NM_001729	ENSG00000174808	BTC	-	betacellulin	protein-coding
755	chr11	118970275	118975070	+	0	NA	5' UTR (NM_001382, exon 1 of 9)	5' UTR (NM_001382, exon 1 of 9)	113	NM_001382	1798	Hs.524081	NM_001382	ENSG00000172269	DPAGT1	ALG7|CDG-Ij|CDG1J|CMS13|CMSTA2|D11S366|DGPT|DPAGT|DPAGT2|G1PT|GPT|UAGT|UGAT	dolichyl-phosphate N-acetylglucosaminephosphotransferase 1	protein-coding
402	chr5	14266551	14270078	+	0	NA	intron (NM_007118, intron 1 of 56)	intron (NM_007118, intron 1 of 56)	124503	NR_134469	7204	Hs.130031	NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
978	chr6	159219023	159241896	+	0	NA	intron (NM_001111077, intron 2 of 13)	intron (NM_001111077, intron 2 of 13)	-8552	NR_102425	101409257	Hs.571207	NR_102425		EZR-AS1	-	EZR antisense RNA 1	ncRNA
307	chr8	28558461	28560857	+	0	NA	promoter-TSS (NR_126027)	promoter-TSS (NR_126027)	669	NM_001440	2137	Hs.491354	NM_001440	ENSG00000012232	EXTL3	BOTV|EXTL1L|EXTR1|ISDNA|REGR|RPR	exostosin like glycosyltransferase 3	protein-coding
956	chr10	104220026	104224787	+	0	NA	intron (NM_024789, intron 1 of 9)	intron (NM_024789, intron 1 of 9)	1236	NM_024789	79847	Hs.309069	NM_024789	ENSG00000138111	MFSD13A	C10orf77|TMEM180|bA18I14.8	major facilitator superfamily domain containing 13A	protein-coding
395	chr6	151416749	151418963	+	0	NA	intron (NR_146719, intron 28 of 28)	intron (NR_146719, intron 28 of 28)	89712	NM_001350490	25902	Hs.591343	NM_015440	ENSG00000120254	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like	protein-coding
490	chr1	32643337	32647087	+	0	NA	promoter-TSS (NM_175852)	promoter-TSS (NM_175852)	-133	NM_175852	200081	Hs.17987	NM_175852	ENSG00000084652	TXLNA	IL14|TXLN	taxilin alpha	protein-coding
424	chr12	113736099	113738716	+	0	NA	non-coding (NR_152403, exon 16 of 16)	non-coding (NR_152403, exon 16 of 16)	8079	NR_106820	102465457		NR_106820	ENSG00000274822	MIR6762	hsa-mir-6762	microRNA 6762	ncRNA
432	chrX	48857513	48859991	+	0	NA	promoter-TSS (NM_020137)	promoter-TSS (NM_020137)	-77	NM_020137	56850	Hs.109929	NM_020137	ENSG00000068400	GRIPAP1	GRASP-1	GRIP1 associated protein 1	protein-coding
754	chr10	99354724	99358704	+	0	NA	intron (NM_001134670, intron 1 of 2)	L4|LINE|RTE	7264	NM_001009997	414157	Hs.662302	NM_001009997	ENSG00000203942	C10orf62	bA548K23.1	chromosome 10 open reading frame 62	protein-coding
911	chr12	13331761	13333361	+	0	NA	Intergenic	Intergenic	-17041	NM_001423	2012	Hs.719042	NM_001423	ENSG00000134531	EMP1	CL-20|EMP-1|TMP	epithelial membrane protein 1	protein-coding
469	chr21	45194881	45197199	+	0	NA	intron (NM_000100, intron 1 of 2)	CpG	216	NM_000100	1476	Hs.695	NM_000100	ENSG00000160213	CSTB	CPI-B|CST6|EPM1|EPM1A|PME|STFB|ULD	cystatin B	protein-coding
753	chr3	114595208	114602242	+	0	NA	intron (NM_001164343, intron 3 of 11)	intron (NM_001164343, intron 3 of 11)	6845	NR_126422	104413890	Hs.612732	NR_126422	ENSG00000239946	ZBTB20-AS3	-	ZBTB20 antisense RNA 3	ncRNA
921	chr5	65180429	65182919	+	0	NA	Intergenic	AluYk4|SINE|Alu	-40708	NM_001006600	55914	Hs.591774	NM_018695	ENSG00000112851	ERBIN	ERBB2IP|HEL-S-78|LAP2	erbb2 interacting protein	protein-coding
895	chr14	75044940	75047954	+	0	NA	intron (NM_000428, intron 3 of 35)	intron (NM_000428, intron 3 of 35)	32587	NM_000428	4053	Hs.512776	NM_000428	ENSG00000119681	LTBP2	C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3	latent transforming growth factor beta binding protein 2	protein-coding
410	chr17	72437295	72441164	+	0	NA	intron (NM_022036, intron 2 of 3)	intron (NM_022036, intron 2 of 3)	9393	NM_018653	55890	Hs.446438	NM_018653	ENSG00000170412	GPRC5C	RAIG-3|RAIG3	G protein-coupled receptor class C group 5 member C	protein-coding
259	chr7	6097499	6099839	+	0	NA	exon (NM_014413, exon 1 of 15)	exon (NM_014413, exon 1 of 15)	191	NM_014413	27102	Hs.520205	NM_014413	ENSG00000086232	EIF2AK1	HCR|HRI	eukaryotic translation initiation factor 2 alpha kinase 1	protein-coding
910	chr4	148702302	148706589	+	0	NA	TTS (NR_039962)	TTS (NR_039962)	699	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
963	chr10	126487149	126492246	+	0	NA	promoter-TSS (NM_032182)	promoter-TSS (NM_032182)	-657	NM_032182	23172	Hs.280695	NM_032182	ENSG00000165660	ABRAXAS2	ABRO1|FAM175B|KIAA0157	abraxas 2, BRISC complex subunit	protein-coding
618	chr2	191183367	191186824	+	0	NA	promoter-TSS (NM_014362)	promoter-TSS (NM_014362)	-324	NM_014362	26275	Hs.656685	NM_014362	ENSG00000198130	HIBCH	HIBYLCOAH	3-hydroxyisobutyryl-CoA hydrolase	protein-coding
866	chr16	69220028	69222162	+	0	NA	promoter-TSS (NM_006750)	promoter-TSS (NM_006750)	45	NM_006750	6645	Hs.461117	NM_006750	ENSG00000168807	SNTB2	D16S2531E|EST25263|SNT2B2|SNT3|SNTL	syntrophin beta 2	protein-coding
193	chr9	131083504	131086495	+	0	NA	promoter-TSS (NM_001329863)	promoter-TSS (NM_001329863)	60	NM_001329861	26995	Hs.632685	NM_015679	ENSG00000167112	TRUB2	CLONE24922	TruB pseudouridine synthase family member 2	protein-coding
587	chr8	123792788	123797378	+	0	NA	intron (NM_014943, intron 1 of 3)	intron (NM_014943, intron 1 of 3)	1182	NM_014943	22882	Hs.377090	NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
813	chr17	41115372	41118715	+	0	NA	promoter-TSS (NM_001261434)	promoter-TSS (NM_001261434)	-528	NM_001261434	80755	Hs.317403	NM_001261434	ENSG00000266967	AARSD1	-	alanyl-tRNA synthetase domain containing 1	protein-coding
479	chr16	66637883	66641810	+	0	NA	intron (NM_181553, intron 1 of 4)	intron (NM_181553, intron 1 of 4)	1212	NR_037619	123920	Hs.298198	NM_144601	ENSG00000140931	CMTM3	BNAS2|CKLFSF3	CKLF like MARVEL transmembrane domain containing 3	protein-coding
262	chr10	28353681	28357454	+	0	NA	intron (NM_001318170, intron 13 of 16)	L1ME3A|LINE|L1	6740	NR_132973	106635548		NR_132973		SNORD130	-	small nucleolar RNA, C/D box 130	snoRNA
918	chr3	193806109	193809032	+	0	NA	Intergenic	Intergenic	-18811	NR_136180	285389	Hs.157102	NR_136179	ENSG00000230102	LINC02028	-	long intergenic non-protein coding RNA 2028	ncRNA
386	chr4	30930612	30932707	+	0	NA	intron (NM_001173523, intron 2 of 2)	intron (NM_001173523, intron 2 of 2)	209622	NM_032457	5099	Hs.479439	NM_002589	ENSG00000169851	PCDH7	BH-Pcdh|BHPCDH|PPP1R120	protocadherin 7	protein-coding
9	chr19	46232170	46234810	+	0	NA	intron (NM_001329633, intron 1 of 1)	intron (NM_001329633, intron 1 of 1)	661	NM_001080469	23403	Hs.128702	NM_001080469	ENSG00000177051	FBXO46	20D7-FC4|FBXO34L|Fbx46	F-box protein 46	protein-coding
525	chr6	28861371	28866126	+	0	NA	promoter-TSS (NR_104117)	promoter-TSS (NR_104117)	-559	NR_104117	414760	Hs.211005	NR_104117	ENSG00000224157	HCG14	dJ111M5.4	HLA complex group 14 (non-protein coding)	ncRNA
942	chr12	116957151	116969411	+	0	NA	Intergenic	HAL1-3A_ME|LINE|L1	-7946	NR_027345	100287569	Hs.441601	NM_207436	ENSG00000196668	LINC00173	NCRNA00173	long intergenic non-protein coding RNA 173	ncRNA
336	chr3	52639302	52642906	+	0	NA	intron (NM_001350076, intron 20 of 31)	intron (NM_001350076, intron 20 of 31)	70483	NM_001124767	440957	Hs.660577	NM_001124767	ENSG00000168273	SMIM4	C3orf78	small integral membrane protein 4	protein-coding
311	chr7	73240403	73249068	+	0	NA	promoter-TSS (NM_001305)	promoter-TSS (NM_001305)	-458	NM_001305	1364	Hs.647036	NM_001305	ENSG00000189143	CLDN4	CPE-R|CPER|CPETR|CPETR1|WBSCR8|hCPE-R	claudin 4	protein-coding
394	chr19	3034486	3038601	+	0	NA	intron (NM_001144761, intron 2 of 19)	CpG	-6931	NM_001144762	7089	Hs.332173	NM_003260	ENSG00000065717	TLE2	ESG|ESG2|GRG2	transducin like enhancer of split 2	protein-coding
110	chr5	34914063	34917514	+	0	NA	promoter-TSS (NM_018321)	promoter-TSS (NM_018321)	-8	NM_002853	5810	Hs.38114	NM_002853	ENSG00000113456	RAD1	HRAD1|REC1	RAD1 checkpoint DNA exonuclease	protein-coding
268	chr8	129565724	129570147	+	0	NA	intron (NR_121672, intron 2 of 7)	L2a|LINE|L2	8990	NR_121673	101927774	Hs.628730	NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
405	chr12	58137388	58140799	+	0	NA	intron (NM_001330169, intron 1 of 5)	intron (NM_001330169, intron 1 of 5)	321	NM_001330169	6302	Hs.632708	NM_005981	ENSG00000135452	TSPAN31	SAS	tetraspanin 31	protein-coding
396	chr4	143467416	143473795	+	0	NA	intron (NM_003866, intron 2 of 26)	intron (NM_003866, intron 2 of 26)	297083	NM_001101669	8821	Hs.176376	NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
949	chr11	118886070	118891193	+	0	NA	promoter-TSS (NM_016146)	promoter-TSS (NM_016146)	426	NM_001028	6230	Hs.512676	NM_001028	ENSG00000118181	RPS25	S25	ribosomal protein S25	protein-coding
739	chr19	55971989	55974868	+	0	NA	promoter-TSS (NM_024710)	promoter-TSS (NM_024710)	-379	NM_001136202	79763	Hs.467306	NM_024710	ENSG00000063241	ISOC2	-	isochorismatase domain containing 2	protein-coding
917	chr1	225838675	225844652	+	0	NA	promoter-TSS (NM_018212)	promoter-TSS (NM_018212)	-818	NM_001008493	55740	Hs.497893	NM_018212	ENSG00000154380	ENAH	ENA|MENA|NDPP1	ENAH, actin regulator	protein-coding
357	chr11	33059745	33062878	+	0	NA	promoter-TSS (NM_001145541)	promoter-TSS (NM_001145541)	-250	NM_001145541	55346	Hs.655341	NM_018393	ENSG00000176148	TCP11L1	dJ85M6.3	t-complex 11 like 1	protein-coding
502	chr11	118400436	118403140	+	0	NA	promoter-TSS (NM_001144034)	promoter-TSS (NM_001144034)	-15	NM_001318755	84866	Hs.564188	NM_032780	ENSG00000149582	TMEM25	-	transmembrane protein 25	protein-coding
155	chr11	67069637	67072720	+	0	NA	intron (NM_017857, intron 1 of 13)	CpG	259	NM_017857	54961	Hs.29173	NM_017857	ENSG00000172830	SSH3	SSH3L	slingshot protein phosphatase 3	protein-coding
111	chr3	30660918	30675951	+	0	NA	intron (NM_001024847, intron 2 of 7)	intron (NM_001024847, intron 2 of 7)	20440	NM_001024847	7048	Hs.82028	NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII	transforming growth factor beta receptor 2	protein-coding
279	chr3	114492629	114495951	+	0	NA	intron (NM_001164343, intron 4 of 11)	intron (NM_001164343, intron 4 of 11)	-16166	NM_001164345	26137	Hs.202577	NM_015642	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|PRIMS|ZNF288	zinc finger and BTB domain containing 20	protein-coding
930	chr14	51142459	51146154	+	0	NA	Intergenic	Intergenic	-9235	NM_021818	60485	Hs.642842	NM_021818	ENSG00000151748	SAV1	SAV|WW45|WWP4	salvador family WW domain containing protein 1	protein-coding
825	chr7	148767254	148771122	+	0	NA	exon (NM_152411, exon 4 of 4)	exon (NM_152411, exon 4 of 4)	18681	NM_152411	136051	Hs.729572	NM_152411	ENSG00000197362	ZNF786	-	zinc finger protein 786	protein-coding
439	chr3	49465931	49468811	+	0	NA	promoter-TSS (NM_032316)	promoter-TSS (NM_032316)	-614	NM_032316	84276	Hs.191460	NM_032316	ENSG00000145029	NICN1	-	nicolin 1	protein-coding
792	chr6	107076117	107078877	+	0	NA	promoter-TSS (NM_018292)	promoter-TSS (NM_018292)	56	NM_018292	55278	Hs.406917	NM_018292	ENSG00000130348	QRSL1	GatA	glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1	protein-coding
213	chr16	2652095	2654756	+	0	NA	promoter-TSS (NR_015441)	promoter-TSS (NR_015441)	40	NR_015441	652276	Hs.720448	NR_015441	ENSG00000215154	LOC652276	-	potassium channel tetramerization domain containing 5 pseudogene	pseudo
780	chr6	3067160	3070542	+	0	NA	promoter-TSS (NM_001354934)	promoter-TSS (NM_001354934)	-100	NM_001354934	8737	Hs.519842	NM_003804	ENSG00000137275	RIPK1	RIP|RIP-1|RIP1	receptor interacting serine/threonine kinase 1	protein-coding
836	chr12	65910075	65915707	+	0	NA	intron (NR_120432, intron 4 of 4)	intron (NR_120432, intron 4 of 4)	38200	NR_135033	105369187	Hs.738044	NR_135033	ENSG00000250748	LOC105369187	-	uncharacterized LOC105369187	ncRNA
407	chr7	27186270	27193757	+	0	NA	intron (NR_038831, intron 1 of 2)	intron (NR_038831, intron 1 of 2)	-2620	NM_024014	3203	Hs.679517	NM_024014	ENSG00000106006	HOXA6	HOX1|HOX1.2|HOX1B	homeobox A6	protein-coding
596	chr16	30405140	30408745	+	0	NA	5' UTR (NM_152652, exon 1 of 2)	5' UTR (NM_152652, exon 1 of 2)	202	NM_152652	197407	Hs.513501	NM_152652	ENSG00000180035	ZNF48	ZNF553	zinc finger protein 48	protein-coding
782	chr15	41134014	41141220	+	0	NA	promoter-TSS (NR_146466)	promoter-TSS (NR_146466)	-895	NR_146468	102724362	Hs.569458	NR_146466	ENSG00000261183	SPINT1-AS1	-	SPINT1 antisense RNA 1	ncRNA
981	chr17	45264906	45267424	+	0	NA	intron (NR_148340, intron 1 of 16)	intron (NR_148340, intron 1 of 16)	540	NM_001353035	996	Hs.463295	NM_001256	ENSG00000004897	CDC27	ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2	cell division cycle 27	protein-coding
190	chr6	27197986	27199513	+	0	NA	Intergenic	AluSq|SINE|Alu	-16753	NM_005865	10279	Hs.274407	NM_005865	ENSG00000112812	PRSS16	TSSP	serine protease 16	protein-coding
613	chrX	48813551	48817146	+	0	NA	promoter-TSS (NM_001136158)	promoter-TSS (NM_001136158)	300	NM_001136159	55593	Hs.496098	NM_017602	ENSG00000068308	OTUD5	DUBA	OTU deubiquitinase 5	protein-coding
539	chr13	31037366	31042165	+	0	NA	intron (NM_001313893, intron 1 of 4)	intron (NM_001313893, intron 1 of 4)	337	NM_002128	3146	Hs.434102	NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
149	chr7	2489708	2492472	+	0	NA	Intergenic	Intergenic	24927	NM_001291784	402635		NM_001291784		GRIFIN	-	galectin-related inter-fiber protein	protein-coding
869	chr17	74580758	74582787	+	0	NA	exon (NM_006456, exon 1 of 9)	exon (NM_006456, exon 1 of 9)	373	NM_006456	10610	Hs.592105	NM_006456	ENSG00000070731	ST6GALNAC2	SAITL1|SIAT7|SIAT7B|SIATL1|ST6GalNAII|STHM	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	protein-coding
896	chr10	102487797	102491698	+	0	NA	Intergenic	CpG	-5719	NM_001304569	5076	Hs.155644	NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS	paired box 2	protein-coding
245	chr10	28376140	28421085	+	0	NA	intron (NM_001318170, intron 11 of 16)	intron (NM_001318170, intron 11 of 16)	-36305	NR_132973	106635548		NR_132973		SNORD130	-	small nucleolar RNA, C/D box 130	snoRNA
244	chr10	23110788	23115989	+	0	NA	Intergenic	Intergenic	-103565	NM_001282747	219681	Hs.659807	NM_173081	ENSG00000165309	ARMC3	CT81|KU-CT-1	armadillo repeat containing 3	protein-coding
493	chr3	32021271	32024220	+	0	NA	promoter-TSS (NM_001137674)	promoter-TSS (NM_001137674)	-521	NM_001137674	344787	Hs.585139	NM_001137674	ENSG00000197385	ZNF860	-	zinc finger protein 860	protein-coding
691	chr17	3569859	3573411	+	0	NA	promoter-TSS (NM_031298)	promoter-TSS (NM_031298)	338	NM_001204698	30851	Hs.12956	NM_014604	ENSG00000213977	TAX1BP3	TIP-1|TIP1	Tax1 binding protein 3	protein-coding
926	chr2	28495798	28501576	+	0	NA	intron (NR_137439, intron 10 of 13)	intron (NR_137439, intron 10 of 13)	34639	NR_038319	100505716	Hs.679092	NR_038319	ENSG00000223522	LOC100505716	-	uncharacterized LOC100505716	ncRNA
719	chr19	8007251	8009188	+	0	NA	intron (NM_006351, intron 1 of 12)	CpG	489	NM_006351	10469	Hs.465784	NM_006351	ENSG00000104980	TIMM44	TIM44	translocase of inner mitochondrial membrane 44	protein-coding
130	chr11	94837530	94843986	+	0	NA	intron (NM_015036, intron 1 of 1)	intron (NM_015036, intron 1 of 1)	17784	NM_015036	23052	Hs.167115	NM_015036	ENSG00000149218	ENDOD1	-	endonuclease domain containing 1	protein-coding
342	chr8	126422155	126424624	+	0	NA	Intergenic	AluSz|SINE|Alu	-19174	NM_025195	10221	Hs.444947	NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
99	chr14	24897141	24901730	+	0	NA	promoter-TSS (NM_001039771)	promoter-TSS (NM_001039771)	294	NM_015299	23351	Hs.713590	NM_015299	ENSG00000100441	KHNYN	KIAA0323	KH and NYN domain containing	protein-coding
365	chr17	46124302	46127444	+	0	NA	intron (NM_001330261, intron 1 of 5)	CpG	187	NM_003204	4779	Hs.514284	NM_003204	ENSG00000082641	NFE2L1	LCR-F1|NRF1|TCF11	nuclear factor, erythroid 2 like 1	protein-coding
717	chr16	2517207	2519488	+	0	NA	promoter-TSS (NR_135198)	promoter-TSS (NR_135198)	-133	NR_135198	729652	Hs.638553	NR_135198	ENSG00000259895	LOC729652	-	uncharacterized LOC729652	ncRNA
696	chr3	128878655	128882268	+	0	NA	promoter-TSS (NM_001199469)	promoter-TSS (NM_001199469)	-388	NM_001199469	57461	Hs.512661	NM_020701	ENSG00000240682	ISY1	FSAP33	ISY1 splicing factor homolog	protein-coding
274	chr8	96279622	96283710	+	0	NA	promoter-TSS (NM_177965)	promoter-TSS (NM_177965)	-204	NM_177965	157657	Hs.548157	NM_177965	ENSG00000156172	C8orf37	BBS21|CORD16|RP64|smalltalk	chromosome 8 open reading frame 37	protein-coding
908	chr9	116224453	116226942	+	0	NA	promoter-TSS (NM_001282923)	promoter-TSS (NM_001282923)	-283	NM_001282923	5998	Hs.494875	NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
452	chr9	71792239	71796760	+	0	NA	intron (NM_004817, intron 1 of 22)	AluY|SINE|Alu	5528	NM_201629	9414	Hs.50382	NM_004817	ENSG00000119139	TJP2	C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2	tight junction protein 2	protein-coding
363	chr12	71037643	71041528	+	0	NA	intron (NR_073474, intron 9 of 10)	intron (NR_073474, intron 9 of 10)	-8365	NM_001109754	5787	Hs.201030	NM_002837	ENSG00000127329	PTPRB	HPTP-BETA|HPTPB|PTPB|R-PTP-BETA|VEPTP	protein tyrosine phosphatase, receptor type B	protein-coding
572	chr11	65727942	65730139	+	0	NA	promoter-TSS (NM_005146)	promoter-TSS (NM_005146)	-120	NM_005146	9092	Hs.502883	NM_005146	ENSG00000175467	SART1	Ara1|HAF|HOMS1|SART1259|SNRNP110|Snu66	SART1, U4/U6.U5 tri-snRNP-associated protein 1	protein-coding
713	chr7	101767476	101769556	+	0	NA	intron (NM_001913, intron 8 of 22)	intron (NM_001913, intron 8 of 22)	-159837	NM_020979	10603	Hs.489448	NM_020979	ENSG00000160999	SH2B2	APS	SH2B adaptor protein 2	protein-coding
470	chr12	69078503	69082608	+	0	NA	promoter-TSS (NR_038930)	promoter-TSS (NR_038930)	84	NR_038930	100507250	Hs.600731	NR_038930	ENSG00000247363	LOC100507250	-	uncharacterized LOC100507250	ncRNA
438	chr16	69561909	69568044	+	0	NA	Intergenic	Intergenic	34795	NR_031719	100302119		NR_031719	ENSG00000223109	MIR1538	MIRN1538|hsa-mir-1538	microRNA 1538	ncRNA
971	chr19	48244422	48249683	+	0	NA	TTS (NM_014601)	TTS (NM_014601)	-1741	NM_015710	29997	Hs.421907	NM_015710	ENSG00000105373	NOP53	GLTSCR2|PICT-1|PICT1	NOP53 ribosome biogenesis factor	protein-coding
581	chr6	125517645	125520477	+	0	NA	promoter-TSS (NR_149043)	promoter-TSS (NR_149043)	-98	NR_149043	100126584	Hs.640031	NR_149043		LOC100126584	-	uncharacterized LOC100126584	ncRNA
322	chr16	75141021	75146680	+	0	NA	3' UTR (NM_032268, exon 5 of 5)	3' UTR (NM_032268, exon 5 of 5)	6820	NM_153486	197257	Hs.380929	NM_153486	ENSG00000166816	LDHD	DLD	lactate dehydrogenase D	protein-coding
610	chr2	227287256	227294908	+	0	NA	Intergenic	Charlie20a|DNA|hAT-Charlie	232427	NR_049887	100847053		NR_049887	ENSG00000263363	MIR5702	-	microRNA 5702	ncRNA
282	chr7	116501501	116504098	+	0	NA	intron (NM_006136, intron 1 of 9)	CpG	236	NM_006136	830	Hs.446123	NM_006136	ENSG00000198898	CAPZA2	CAPPA2|CAPZ	capping actin protein of muscle Z-line subunit alpha 2	protein-coding
787	chr2	9345529	9348790	+	0	NA	5' UTR (NM_003887, exon 1 of 28)	5' UTR (NM_003887, exon 1 of 28)	265	NM_001135191	8853	Hs.555902	NM_003887	ENSG00000151693	ASAP2	AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein-coding
325	chr1	201922424	201925861	+	0	NA	promoter-TSS (NM_006335)	promoter-TSS (NM_006335)	-477	NM_006335	10440	Hs.20716	NM_006335	ENSG00000134375	TIMM17A	TIM17|TIM17A	translocase of inner mitochondrial membrane 17A	protein-coding
362	chr2	227645618	227649083	+	0	NA	intron (NM_005544, intron 1 of 1)	intron (NM_005544, intron 1 of 1)	16156	NM_005544	3667	Hs.471508	NM_005544	ENSG00000169047	IRS1	HIRS-1	insulin receptor substrate 1	protein-coding
870	chr9	131417571	131420422	+	0	NA	exon (NM_052844, exon 1 of 9)	exon (NM_052844, exon 1 of 9)	133	NM_052844	89891	Hs.495240	NM_052844	ENSG00000119333	WDR34	DIC5|FAP133|SRTD11|bA216B9.3	WD repeat domain 34	protein-coding
935	chr20	33295020	33299429	+	0	NA	exon (NM_021202, exon 4 of 5)	exon (NM_021202, exon 4 of 5)	4678	NM_001329431	58476	Hs.516994	NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PIG-U|PIGU|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
88	chr12	66032837	66054225	+	0	NA	Intergenic	Intergenic	-7379	NR_120432	100507065	Hs.591038	NR_120431		LOC100507065	-	uncharacterized LOC100507065	ncRNA
20	chr8	94938655	94952426	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	16261	NM_001161781	54704	Hs.22265	NM_018444	ENSG00000164951	PDP1	PDH|PDP|PDPC|PPM2A|PPM2C	pyruvate dehyrogenase phosphatase catalytic subunit 1	protein-coding
125	chr5	122370630	122375089	+	0	NA	promoter-TSS (NM_000943)	promoter-TSS (NM_000943)	-434	NM_000943	5480	Hs.110364	NM_000943	ENSG00000168938	PPIC	CYPC	peptidylprolyl isomerase C	protein-coding
720	chr12	49411009	49415047	+	0	NA	promoter-TSS (NM_002733)	promoter-TSS (NM_002733)	-399	NM_001206709	5571	Hs.530862	NM_002733	ENSG00000181929	PRKAG1	AMPKG	protein kinase AMP-activated non-catalytic subunit gamma 1	protein-coding
212	chr7	73212186	73217524	+	0	NA	Intergenic	MER31-int|LTR|ERV1	-30255	NM_001306	1365	Hs.647023	NM_001306	ENSG00000165215	CLDN3	C7orf1|CPE-R2|CPETR2|HRVP1|RVP1	claudin 3	protein-coding
947	chr5	92580541	92587944	+	0	NA	Intergenic	Intergenic	322807	NR_109825	441094	Hs.457407	NR_015369	ENSG00000237187	NR2F1-AS1	-	NR2F1 antisense RNA 1	ncRNA
506	chr6	134060751	134068957	+	0	NA	intron (NR_109982, intron 4 of 8)	intron (NR_109982, intron 4 of 8)	-77431	NR_027030	154089	Hs.126165	NR_027030		LINC01312	-	long intergenic non-protein coding RNA 1312	ncRNA
827	chr17	38253111	38258891	+	0	NA	intron (NM_021724, intron 1 of 7)	intron (NM_021724, intron 1 of 7)	977	NM_021724	9572	Hs.724	NM_021724	ENSG00000126368	NR1D1	EAR1|REVERBA|REVERBalpha|THRA1|THRAL|ear-1|hRev	nuclear receptor subfamily 1 group D member 1	protein-coding
146	chr2	128282575	128285820	+	0	NA	promoter-TSS (NM_017969)	promoter-TSS (NM_017969)	-110	NM_017969	55677	Hs.469879	NM_017969	ENSG00000163166	IWS1	-	IWS1, SUPT6H interacting protein	protein-coding
702	chr3	49065436	49067944	+	0	NA	TTS (NM_001320581)	TTS (NM_001320581)	185	NM_000884	3615	Hs.654400	NM_000884	ENSG00000178035	IMPDH2	IMPD2|IMPDH-II	inosine monophosphate dehydrogenase 2	protein-coding
454	chr5	141301949	141304715	+	0	NA	promoter-TSS (NM_014773)	promoter-TSS (NM_014773)	-53	NM_001142603	9812	Hs.210532	NM_014773	ENSG00000081791	DELE1	DELE|KIAA0141	DAP3 binding cell death enhancer 1	protein-coding
292	chrX	10545200	10551501	+	0	NA	intron (NM_033290, intron 1 of 9)	intron (NM_033290, intron 1 of 9)	-3393	NM_001193277	4281	Hs.27695	NM_000381	ENSG00000101871	MID1	BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY	midline 1	protein-coding
663	chr6	27110907	27119217	+	0	NA	promoter-TSS (NM_001312653)	promoter-TSS (NM_001312653)	201	NM_080596	85235	Hs.352225	NM_080596	ENSG00000274997	HIST1H2AH	H2A/S|H2AFALii|H2AH|dJ86C11.1	histone cluster 1 H2A family member h	protein-coding
650	chr6	28302273	28305613	+	0	NA	promoter-TSS (NM_001243243)	promoter-TSS (NM_001243243)	-32	NM_001135216	64288	Hs.656413	NM_030899	ENSG00000235109	ZSCAN31	ZNF20-Lp|ZNF310P|ZNF323	zinc finger and SCAN domain containing 31	protein-coding
380	chr2	232570038	232580996	+	0	NA	intron (NM_002823, intron 1 of 4)	CpG-16069	2282	NM_002823	5757	Hs.459927	NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
214	chr3	186499510	186505354	+	0	NA	promoter-TSS (NR_002587)	promoter-TSS (NR_002587)	-153	NR_002587	619567		NR_002587	ENSG00000238942	SNORD2	R39B|SNR39B	small nucleolar RNA, C/D box 2	snoRNA
218	chr19	1172309	1178754	+	0	NA	Intergenic	L2b|LINE|L2	-1249	NM_014963	22904	Hs.408708	NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
203	chr4	170578691	170582786	+	0	NA	promoter-TSS (NM_001243374)	promoter-TSS (NM_001243374)	-475	NM_001243374	1182	Hs.481186	NM_001829	ENSG00000109572	CLCN3	CLC3|ClC-3	chloride voltage-gated channel 3	protein-coding
25	chr1	39569793	39573051	+	0	NA	intron (NM_012090, intron 1 of 92)	CpG	21583	NM_012090	23499	Hs.472475	NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|MACF|OFC4	microtubule-actin crosslinking factor 1	protein-coding
656	chr1	16823913	16826996	+	0	NA	Intergenic	CpG	-6258	NR_023386	114819	Hs.597881	NR_023386	ENSG00000080947	CROCCP3	CROCCL2|dJ798A10.2	ciliary rootlet coiled-coil, rootletin pseudogene 3	pseudo
937	chr11	59327364	59331044	+	0	NA	Intergenic	AluSx|SINE|Alu	33427	NR_036120	100422880		NR_036120	ENSG00000264559	MIR3162	mir-3162	microRNA 3162	ncRNA
159	chr17	79883477	79887403	+	0	NA	promoter-TSS (NR_015454)	promoter-TSS (NR_015454)	147	NM_002359	4097	Hs.252229	NM_002359	ENSG00000197063	MAFG	hMAF	MAF bZIP transcription factor G	protein-coding
890	chr9	139843152	139845944	+	0	NA	Intergenic	CpG	-2220	NM_178536	286256	Hs.440519	NM_178536	ENSG00000184925	LCN12	-	lipocalin 12	protein-coding
403	chr1	111018070	111021937	+	0	NA	Intergenic	MIR3|SINE|MIR	-3385	NR_003599	643160	Hs.532720	NR_003599	ENSG00000240194	CYMP	-	chymosin pseudogene	pseudo
804	chr7	101738771	101742803	+	0	NA	intron (NM_001913, intron 5 of 22)	intron (NM_001913, intron 5 of 22)	-187566	NM_020979	10603	Hs.489448	NM_020979	ENSG00000160999	SH2B2	APS	SH2B adaptor protein 2	protein-coding
846	chr4	75718452	75722637	+	0	NA	promoter-TSS (NM_001729)	promoter-TSS (NM_001729)	-648	NM_001316963	685	Hs.591704	NM_001729	ENSG00000174808	BTC	-	betacellulin	protein-coding
877	chr11	64121888	64128033	+	0	NA	TTS (NM_032251)	TTS (NM_032251)	-1665	NM_001300802	8986	Hs.105584	NM_003942	ENSG00000162302	RPS6KA4	MSK2|RSK-B|S6K-alpha-4	ribosomal protein S6 kinase A4	protein-coding
351	chr14	105152417	105159429	+	0	NA	promoter-TSS (NM_032714)	promoter-TSS (NM_032714)	-20	NM_001031714	64423	Hs.24956	NM_022489	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	inverted formin, FH2 and WH2 domain containing	protein-coding
299	chr19	49650894	49656049	+	0	NA	TTS (NM_002152)	TTS (NM_002152)	5210	NM_002152	3270	Hs.436885	NM_002152	ENSG00000130528	HRC	-	histidine rich calcium binding protein	protein-coding
196	chr4	169503931	169511877	+	0	NA	intron (NM_016081, intron 2 of 20)	intron (NM_016081, intron 2 of 20)	-44864	NM_001166109	23022	Hs.151220	NM_016081	ENSG00000129116	PALLD	CGI-151|CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
422	chr11	10686723	10694344	+	0	NA	intron (NM_130385, intron 1 of 20)	intron (NM_130385, intron 1 of 20)	-16685	NM_001098579	10335	Hs.501898	NM_130385	ENSG00000072952	MRVI1	IRAG|JAW1L	murine retrovirus integration site 1 homolog	protein-coding
704	chr2	182778917	182783205	+	0	NA	non-coding (NR_109843, exon 11 of 18)	non-coding (NR_109843, exon 11 of 18)	24618	NM_001130445	6744	Hs.196983	NM_006751	ENSG00000138434	SSFA2	CS-1|CS1|KRAP|SPAG13	sperm specific antigen 2	protein-coding
183	chr14	77921739	77926498	+	0	NA	promoter-TSS (NM_001321441)	promoter-TSS (NM_001321441)	-102	NM_001321441	10598	Hs.204041	NM_012111	ENSG00000100591	AHSA1	AHA1|C14orf3|hAha1|p38	activator of HSP90 ATPase activity 1	protein-coding
722	chr1	161145862	161148342	+	0	NA	intron (NM_001199873, intron 1 of 7)	CpG	656	NM_003779	8703	Hs.321231	NM_003779	ENSG00000158850	B4GALT3	beta4Gal-T3	beta-1,4-galactosyltransferase 3	protein-coding
966	chr6	37863398	37866734	+	0	NA	intron (NM_021943, intron 1 of 5)	L1ME3|LINE|L1	77759	NM_021943	60685	Hs.36959	NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
154	chr7	2558761	2568754	+	0	NA	intron (NM_001040167, intron 1 of 7)	CpG	-2951	NR_039791	100616116		NR_039791	ENSG00000264357	MIR4648	-	microRNA 4648	ncRNA
736	chr10	104179065	104184927	+	0	NA	exon (NM_024326, exon 3 of 4)	exon (NM_024326, exon 3 of 4)	-2305	NM_001270965	5662	Hs.154658	NM_002779	ENSG00000059915	PSD	EFA6|EFA6A|PSD1|TYL	pleckstrin and Sec7 domain containing	protein-coding
821	chr19	12911110	12914057	+	0	NA	5' UTR (NM_005809, exon 1 of 6)	5' UTR (NM_005809, exon 1 of 6)	141	NM_005809	7001	Hs.432121	NM_005809	ENSG00000167815	PRDX2	HEL-S-2a|NKEF-B|NKEFB|PRP|PRX2|PRXII|PTX1|TDPX1|TPX1|TSA	peroxiredoxin 2	protein-coding
222	chr8	145741175	145744865	+	0	NA	promoter-TSS (NM_001272036)	promoter-TSS (NM_001272036)	190	NM_004260	9401	Hs.31442	NM_004260	ENSG00000160957	RECQL4	RECQ4	RecQ like helicase 4	protein-coding
761	chr18	68081327	68094615	+	0	NA	Intergenic	AluJb|SINE|Alu	-36144	NR_110764	101060542	Hs.586967	NR_110764	ENSG00000266278	LINC01910	-	long intergenic non-protein coding RNA 1910	ncRNA
40	chr7	25017426	25022479	+	0	NA	promoter-TSS (NM_015550)	promoter-TSS (NM_015550)	-121	NM_015550	26031	Hs.520259	NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
496	chr16	2570046	2572006	+	0	NA	TTS (NM_001694)	TTS (NM_001694)	663	NM_001145815	51005	Hs.740430	NM_015944	ENSG00000162066	AMDHD2	CGI-14	amidohydrolase domain containing 2	protein-coding
632	chr19	41102559	41113028	+	0	NA	intron (NM_001042545, intron 1 of 30)	intron (NM_001042545, intron 1 of 30)	516	NM_001042545	8425	Hs.466766	NM_003573	ENSG00000090006	LTBP4	ARCL1C|LTBP-4|LTBP4L|LTBP4S	latent transforming growth factor beta binding protein 4	protein-coding
488	chr11	110062777	110069265	+	0	NA	TTS (NM_001260492)	TTS (NM_001260492)	101416	NM_001260493	5962	Hs.263671	NM_002906	ENSG00000137710	RDX	DFNB24	radixin	protein-coding
573	chr9	130739819	130744714	+	0	NA	intron (NM_001035254, intron 1 of 10)	intron (NM_001035254, intron 1 of 10)	546	NM_001035254	399665	Hs.535972	NM_203305	ENSG00000167106	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	family with sequence similarity 102 member A	protein-coding
851	chr2	234154968	234158544	+	0	NA	Intergenic	MIR|SINE|MIR	-3461	NM_030803	55054	Hs.529322	NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
902	chr16	67967069	67971946	+	0	NA	exon (NM_002801, exon 5 of 8)	exon (NM_002801, exon 5 of 8)	1273	NM_002801	5699	Hs.9661	NM_002801	ENSG00000205220	PSMB10	LMP10|MECL1|beta2i	proteasome subunit beta 10	protein-coding
392	chr2	44882	48273	+	0	NA	promoter-TSS (NM_001077710)	promoter-TSS (NM_001077710)	11	NM_001077710	642273	Hs.8379	NM_001077710	ENSG00000184731	FAM110C	-	family with sequence similarity 110 member C	protein-coding
199	chr19	51865022	51872687	+	0	NA	intron (NM_001985, intron 1 of 5)	intron (NM_001985, intron 1 of 5)	818	NM_001985	2109	Hs.348531	NM_001985	ENSG00000105379	ETFB	FP585|MADD	electron transfer flavoprotein subunit beta	protein-coding
950	chr8	8859846	8874612	+	0	NA	intron (NM_001354636, intron 3 of 7)	AluSz6|SINE|Alu	6593	NM_001354635	90459	Hs.20000	NM_153332	ENSG00000104626	ERI1	3'HEXO|HEXO|THEX1	exoribonuclease 1	protein-coding
676	chr9	32571454	32574289	+	0	NA	intron (NM_182739, intron 1 of 2)	intron (NM_182739, intron 1 of 2)	311	NM_001199987	4712	Hs.493668	NM_002493	ENSG00000165264	NDUFB6	B17|CI	NADH:ubiquinone oxidoreductase subunit B6	protein-coding
474	chr10	126808243	126814369	+	0	NA	intron (NM_001083914, intron 1 of 10)	intron (NM_001083914, intron 1 of 10)	36381	NM_001321014	1488	Hs.501345	NM_001329	ENSG00000175029	CTBP2	-	C-terminal binding protein 2	protein-coding
915	chr9	37798859	37803216	+	0	NA	exon (NM_024345, exon 1 of 7)	exon (NM_024345, exon 1 of 7)	254	NM_024345	79269	Hs.118394	NM_024345	ENSG00000122741	DCAF10	WDR32	DDB1 and CUL4 associated factor 10	protein-coding
897	chr2	182796388	182800903	+	0	NA	Intergenic	Intergenic	-20323	NR_048567	151242	Hs.10941	NM_001080545	ENSG00000150722	PPP1R1C	IPP5	protein phosphatase 1 regulatory inhibitor subunit 1C	protein-coding
615	chr10	74055001	74059698	+	0	NA	Intergenic	MIRb|SINE|MIR	23672	NM_019058	54541	Hs.744875	NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
746	chr7	66092177	66094598	+	0	NA	promoter-TSS (NM_001167961)	promoter-TSS (NM_001167961)	-481	NM_001167961	154881	Hs.546627	NM_153033	ENSG00000243335	KCTD7	CLN14|EPM3	potassium channel tetramerization domain containing 7	protein-coding
721	chr6	158487537	158491990	+	0	NA	intron (NM_001178088, intron 12 of 25)	intron (NM_001178088, intron 12 of 25)	51683	NM_001178088	8871	Hs.434494	NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
623	chr17	79518172	79521806	+	0	NA	promoter-TSS (NR_033338)	promoter-TSS (NR_033338)	-560	NR_033338	80233	Hs.313905	NM_025161	ENSG00000185504	FAAP100	C17orf70	Fanconi anemia core complex associated protein 100	protein-coding
556	chr1	46392978	46396816	+	0	NA	intron (NM_001319245, intron 4 of 28)	L1MC5|LINE|L1	64877	NM_001324321	23139	Hs.319481	NM_015112	ENSG00000086015	MAST2	MAST205|MTSSK	microtubule associated serine/threonine kinase 2	protein-coding
389	chr4	77995997	77999644	+	0	NA	promoter-TSS (NM_001348140)	promoter-TSS (NM_001348140)	-695	NM_001348137	10983	Hs.518827	NM_006835	ENSG00000118816	CCNI	CCNI1|CYC1|CYI	cyclin I	protein-coding
298	chr7	152406357	152410214	+	0	NA	Intergenic	AluSx1|SINE|Alu	-35035	NM_005431	7516	Hs.647093	NM_005431	ENSG00000196584	XRCC2	FANCU	X-ray repair cross complementing 2	protein-coding
640	chr11	62471782	62474735	+	0	NA	intron (NM_001122955, intron 1 of 10)	intron (NM_001122955, intron 1 of 10)	529	NM_001130702	26580	Hs.533709	NM_032667	ENSG00000168000	BSCL2	GNG3LG|HMN5|PELD|SPG17	BSCL2, seipin lipid droplet biogenesis associated	protein-coding
952	chr6	29931447	29936569	+	0	NA	Intergenic	Intergenic	-8884	NR_028032	10255	Hs.656251	NM_005844	ENSG00000204625	HCG9	HCGIX|HCGIX4	HLA complex group 9 (non-protein coding)	ncRNA
660	chr19	939601	942070	+	0	NA	intron (NM_005224, intron 3 of 8)	CpG	14798	NM_005224	1820	Hs.501296	NM_005224	ENSG00000116017	ARID3A	BRIGHT|DRIL1|DRIL3|E2FBP1	AT-rich interaction domain 3A	protein-coding
994	chr10	29724390	29730871	+	0	NA	intron (NR_110927, intron 2 of 2)	HERVIP10FH-int|LTR|ERV1	28458	NR_110928	102724316	Hs.499209	NR_003930	ENSG00000224597	SVIL-AS1	-	SVIL antisense RNA 1	ncRNA
520	chr15	51912634	51916147	+	0	NA	intron (NM_001174117, intron 1 of 40)	CpG	577	NM_001174116	23312	Hs.511386	NM_015263	ENSG00000104093	DMXL2	DFNA71|PEPNS|RC3	Dmx like 2	protein-coding
463	chr12	76026982	76046311	+	0	NA	Intergenic	Intergenic	-131228	NM_007043	11103	Hs.645517	NM_007043	ENSG00000111615	KRR1	HRB2|RIP-1	KRR1, small subunit processome component homolog	protein-coding
82	chr13	99135428	99138770	+	0	NA	intron (NM_001032296, intron 2 of 10)	intron (NM_001032296, intron 2 of 10)	37280	NM_003576	8428	Hs.508514	NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
165	chr2	227034937	227059446	+	0	NA	Intergenic	L1ME3F|LINE|L1	39681	NR_046102	646736	Hs.712836	NR_046102		LOC646736	-	uncharacterized LOC646736	ncRNA
434	chr8	145908493	145913916	+	0	NA	promoter-TSS (NM_001308208)	promoter-TSS (NM_001308208)	-7	NM_001308208	80728	Hs.148988	NM_025251	ENSG00000147799	ARHGAP39	CrGAP|Vilse	Rho GTPase activating protein 39	protein-coding
637	chr11	74301867	74306279	+	0	NA	non-coding (NR_046410, exon 1 of 12)	non-coding (NR_046410, exon 1 of 12)	423	NR_046410	10714	Hs.82502	NM_006591	ENSG00000077514	POLD3	P66|P68|PPP1R128	DNA polymerase delta 3, accessory subunit	protein-coding
334	chr10	30344689	30349177	+	0	NA	intron (NM_001350021, intron 1 of 4)	intron (NM_001350021, intron 1 of 4)	1582	NM_001350001	57608	Hs.533953	NM_020848	ENSG00000165757	JCAD	KIAA1462	junctional cadherin 5 associated	protein-coding
176	chr16	75680217	75684496	+	0	NA	promoter-TSS (NM_001130089)	promoter-TSS (NM_001130089)	721	NR_144545	54386	Hs.301419	NM_018975	ENSG00000166848	TERF2IP	DRIP5|RAP1	TERF2 interacting protein	protein-coding
992	chr15	41134014	41141220	+	0	NA	promoter-TSS (NR_146466)	promoter-TSS (NR_146466)	-895	NR_146468	102724362	Hs.569458	NR_146466	ENSG00000261183	SPINT1-AS1	-	SPINT1 antisense RNA 1	ncRNA
326	chr17	75274897	75286402	+	0	NA	intron (NM_001293695, intron 1 of 10)	MIR|SINE|MIR	-2670	NR_136503	105371907	Hs.500668	NR_136503	ENSG00000263718	LOC105371907	-	uncharacterized LOC105371907	ncRNA
803	chr7	140096800	140098852	+	0	NA	intron (NM_207113, intron 1 of 14)	intron (NM_207113, intron 1 of 14)	524	NM_207113	84255	Hs.446021	NM_032295	ENSG00000157800	SLC37A3	-	solute carrier family 37 member 3	protein-coding
725	chr21	46430957	46434083	+	0	NA	Intergenic	Intergenic	-7878	NR_024089	378825	Hs.534828	NR_024089	ENSG00000275874	PICSAR	C21orf113|LINC00162|NCRNA00162|NLC1-C|NLC1C|PRED74	P38 inhibited cutaneous squamous cell carcinoma associated lincRNA	ncRNA
733	chr7	115954923	115959958	+	0	NA	Intergenic	Intergenic	-30659	NR_130922	102724434	Hs.667624	NR_130921	ENSG00000237870	LOC102724434	-	uncharacterized LOC102724434	ncRNA
805	chr7	130665800	130669494	+	0	NA	intron (NR_109851, intron 4 of 5)	MER112|DNA|hAT-Charlie	69424	NR_109780	100506860	Hs.635013	NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
766	chr2	38602234	38606616	+	0	NA	promoter-TSS (NM_001330460)	promoter-TSS (NM_001330460)	140	NM_001330461	64225	Hs.594950	NM_022374	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|aip-2|atlastin2	atlastin GTPase 2	protein-coding
57	chr19	42771200	42777092	+	0	NA	intron (NM_001304815, intron 1 of 20)	intron (NM_001304815, intron 1 of 20)	1457	NM_001304815	23152	Hs.388236	NM_015125	ENSG00000079432	CIC	MRD45	capicua transcriptional repressor	protein-coding
117	chr7	100270397	100273938	+	0	NA	intron (NM_005273, intron 1 of 9)	CpG	804	NM_005273	2783	Hs.185172	NM_005273	ENSG00000172354	GNB2	-	G protein subunit beta 2	protein-coding
41	chr12	63116803	63121678	+	0	NA	intron (NM_020700, intron 5 of 9)	MER39|LTR|ERV1	121774	NR_029661	406891		NR_029661	ENSG00000199179	MIRLET7I	LET7I|MIRNLET7I|hsa-let-7i|let-7i	microRNA let-7i	ncRNA
527	chr1	193089968	193093671	+	0	NA	intron (NM_024529, intron 1 of 16)	intron (NM_024529, intron 1 of 16)	731	NM_024529	79577	Hs.378996	NM_024529	ENSG00000134371	CDC73	C1orf28|FIHP|HPTJT|HRPT1|HRPT2|HYX	cell division cycle 73	protein-coding
857	chr16	69138585	69142012	+	0	NA	intron (NM_138612, intron 1 of 3)	CpG	169	NM_138612	3038	Hs.592069	NM_005329	ENSG00000103044	HAS3	-	hyaluronan synthase 3	protein-coding
8	chr9	38034932	38041461	+	0	NA	intron (NM_003028, intron 1 of 5)	intron (NM_003028, intron 1 of 5)	31014	NM_003028	6461	Hs.521482	NM_003028	ENSG00000107338	SHB	bA3J10.2	SH2 domain containing adaptor protein B	protein-coding
545	chr8	126402194	126405275	+	0	NA	Intergenic	Intergenic	-38829	NM_025195	10221	Hs.444947	NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
5	chr16	30708536	30713013	+	0	NA	promoter-TSS (NM_001256932)	promoter-TSS (NM_001256932)	312	NM_006662	10847	Hs.620916	NM_006662	ENSG00000080603	SRCAP	DOMO1|EAF1|FLHS|SWR1	Snf2 related CREBBP activator protein	protein-coding
4	chr14	24767496	24770511	+	0	NA	promoter-TSS (NM_001286367)	promoter-TSS (NM_001286367)	36	NM_001136050	115817	Hs.348350	NM_138452	ENSG00000157379	DHRS1	SDR19C1	dehydrogenase/reductase 1	protein-coding
388	chr17	79978703	79982986	+	0	NA	promoter-TSS (NM_001271007)	promoter-TSS (NM_001271007)	-50	NM_001330536	201254	Hs.37616	NM_144998	ENSG00000169689	CENPX	CENP-X|D9|FAAP10|MHF2|STRA13	centromere protein X	protein-coding
628	chr2	227507912	227533994	+	0	NA	Intergenic	Intergenic	2556	NR_049887	100847053		NR_049887	ENSG00000263363	MIR5702	-	microRNA 5702	ncRNA
649	chr20	33542134	33544807	+	0	NA	promoter-TSS (NM_001322495)	promoter-TSS (NM_001322495)	-32	NM_001322495	2937	Hs.82327	NM_000178	ENSG00000100983	GSS	GSHS|HEL-S-64p|HEL-S-88n	glutathione synthetase	protein-coding
347	chr4	11496871	11501054	+	0	NA	Intergenic	Intergenic	-68425	NM_005114	9957	Hs.507348	NM_005114	ENSG00000002587	HS3ST1	3OST|3OST1	heparan sulfate-glucosamine 3-sulfotransferase 1	protein-coding
368	chr12	120727708	120732169	+	0	NA	Intergenic	Intergenic	-10186	NM_012240	23409	Hs.50861	NM_012240	ENSG00000089163	SIRT4	SIR2L4	sirtuin 4	protein-coding
492	chr1	85063591	85066714	+	0	NA	intron (NR_125761, intron 2 of 2)	intron (NR_125761, intron 2 of 2)	21562	NR_125761	103695366	Hs.576097	NR_125761		LINC01461	TCONS_00001552	long intergenic non-protein coding RNA 1461	ncRNA
651	chr17	55965859	55972318	+	0	NA	intron (NM_001271875, intron 1 of 10)	L2a|LINE|L2	11662	NM_001292025	404093	Hs.46679	NM_001271875	ENSG00000180891	CUEDC1	-	CUE domain containing 1	protein-coding
607	chr15	40729960	40735268	+	0	NA	promoter-TSS (NR_125372)	promoter-TSS (NR_125372)	694	NM_001301132	22893	Hs.22109	NM_014952	ENSG00000140320	BAHD1	-	bromo adjacent homology domain containing 1	protein-coding
636	chr11	6702784	6705733	+	0	NA	intron (NM_022061, intron 1 of 2)	intron (NM_022061, intron 1 of 2)	374	NM_022061	63875	Hs.523456	NM_022061	ENSG00000158042	MRPL17	L17mt|LIP2|MRP-L17|MRP-L26|RPL17L|RPML26	mitochondrial ribosomal protein L17	protein-coding
102	chr6	116706516	116710013	+	0	NA	intron (NM_001322941, intron 1 of 5)	intron (NM_001322941, intron 1 of 5)	-15382	NR_148944	100287467	Hs.458358	NR_148944		LOC100287467	-	uncharacterized LOC100287467	ncRNA
441	chr8	126280427	126294418	+	0	NA	intron (NM_173685, intron 5 of 7)	intron (NM_173685, intron 5 of 7)	-155141	NM_025195	10221	Hs.444947	NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
89	chr11	703580	709145	+	0	NA	intron (NM_022772, intron 1 of 20)	CpG	242	NM_022772	64787	Hs.55016	NM_022772	ENSG00000177106	EPS8L2	DFNB106|EPS8R2	EPS8 like 2	protein-coding
688	chr15	90726286	90729403	+	0	NA	promoter-TSS (NM_001324029)	promoter-TSS (NM_001324029)	-308	NM_020210	10509	Hs.474935	NM_020210	ENSG00000185033	SEMA4B	SEMAC|SemC	semaphorin 4B	protein-coding
661	chr6	130050546	130054497	+	0	NA	Intergenic	Intergenic	-21151	NM_033515	93663	Hs.486458	NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
478	chr1	1237448	1246372	+	0	NA	intron (NM_030649, intron 1 of 23)	intron (NM_030649, intron 1 of 23)	1359	NM_030649	116983	Hs.535257	NM_030649	ENSG00000131584	ACAP3	CENTB5	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	protein-coding
187	chr7	1605670	1611940	+	0	NA	promoter-TSS (NR_021487)	promoter-TSS (NR_021487)	824	NM_032302	84262	Hs.446311	NM_032302	ENSG00000157778	PSMG3	C7orf48|PAC3	proteasome assembly chaperone 3	protein-coding
762	chr3	65947130	65951565	+	0	NA	intron (NM_001033057, intron 1 of 22)	intron (NM_001033057, intron 1 of 22)	-9114	NR_145422	151877	Hs.476636	NR_145422	ENSG00000272610	MAGI1-IT1	-	MAGI1 intronic transcript 1	ncRNA
375	chr19	2028100	2036244	+	0	NA	Intergenic	Intergenic	-16470	NM_017797	55643	Hs.465543	NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
272	chr8	67973022	67978001	+	0	NA	promoter-TSS (NM_006837)	promoter-TSS (NM_006837)	-949	NM_006837	10987	Hs.491912	NM_006837	ENSG00000121022	COPS5	CSN5|JAB1|MOV-34|SGN5	COP9 signalosome subunit 5	protein-coding
238	chr6	151370404	151375505	+	0	NA	intron (NM_001350492, intron 26 of 27)	intron (NM_001350492, intron 26 of 27)	44810	NM_001350490	25902	Hs.591343	NM_015440	ENSG00000120254	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like	protein-coding
985	chr10	92338070	92354471	+	0	NA	Intergenic	MIRb|SINE|MIR	-45708	NR_110657	101926942	Hs.382666	NR_110657	ENSG00000236373	LOC101926942	-	uncharacterized LOC101926942	ncRNA
907	chr17	1357611	1361120	+	0	NA	exon (NM_016823, exon 1 of 3)	exon (NM_016823, exon 1 of 3)	196	NM_016823	1398	Hs.461896	NM_005206	ENSG00000167193	CRK	CRKII|p38	CRK proto-oncogene, adaptor protein	protein-coding
29	chrX	118635255	118638695	+	0	NA	Intergenic	Intergenic	-33892	NR_028443	100303728	Hs.714405	NR_028443	ENSG00000224281	SLC25A5-AS1	-	SLC25A5 antisense RNA 1	ncRNA
672	chr22	32056415	32059755	+	0	NA	intron (NM_001326414, intron 1 of 8)	CpG	465	NM_001326411	23761	Hs.420559	NM_014338	ENSG00000241878	PISD	DJ858B16|PSD|PSDC|PSSC|dJ858B16.2	phosphatidylserine decarboxylase	protein-coding
728	chr1	68177681	68180963	+	0	NA	intron (NM_018841, intron 2 of 3)	intron (NM_018841, intron 2 of 3)	28462	NM_001199741	1647	Hs.80409	NM_001924	ENSG00000116717	GADD45A	DDIT1|GADD45	growth arrest and DNA damage inducible alpha	protein-coding
912	chr2	10586504	10591952	+	0	NA	promoter-TSS (NM_002539)	promoter-TSS (NM_002539)	-548	NM_001287188	4953	Hs.467701	NM_002539	ENSG00000115758	ODC1	ODC	ornithine decarboxylase 1	protein-coding
829	chr5	138676840	138679626	+	0	NA	5' UTR (NM_001033112, exon 1 of 4)	5' UTR (NM_001033112, exon 1 of 4)	110	NM_001033112	51247	Hs.396644	NM_016480	ENSG00000120727	PAIP2	PAIP-2|PAIP2A	poly(A) binding protein interacting protein 2	protein-coding
605	chr10	74030008	74038323	+	0	NA	exon (NM_019058, exon 2 of 3)	exon (NM_019058, exon 2 of 3)	488	NM_019058	54541	Hs.744875	NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
604	chr20	61453616	61456858	+	0	NA	intron (NM_001853, intron 10 of 31)	intron (NM_001853, intron 10 of 31)	6823	NM_001853	1299	Hs.716639	NM_001853	ENSG00000092758	COL9A3	DJ885L7.4.1|EDM3|IDD|MED	collagen type IX alpha 3 chain	protein-coding
593	chr19	3434029	3436395	+	0	NA	intron (NM_005597, intron 6 of 8)	CpG-12493	45328	NM_001136503	284422	Hs.130714	NM_001136503	ENSG00000095932	SMIM24	C19orf77|HSPC323|MARDI	small integral membrane protein 24	protein-coding
840	chr5	92761467	92763412	+	0	NA	intron (NR_109822, intron 2 of 2)	intron (NR_109822, intron 2 of 2)	144610	NR_109825	441094	Hs.457407	NR_015369	ENSG00000237187	NR2F1-AS1	-	NR2F1 antisense RNA 1	ncRNA
791	chr17	18216709	18219744	+	0	NA	promoter-TSS (NM_144775)	promoter-TSS (NM_144775)	180	NM_004618	7156	Hs.592115	NM_004618	ENSG00000177302	TOP3A	TOP3|ZGRF7	DNA topoisomerase III alpha	protein-coding
440	chr17	79891716	79896296	+	0	NA	exon (NM_001282281, exon 3 of 8)	exon (NM_001282281, exon 3 of 8)	1109	NM_001282281	5831	Hs.163451	NM_006907	ENSG00000183010	PYCR1	ARCL2B|ARCL3B|P5C|P5CR|PIG45|PP222|PRO3|PYCR	pyrroline-5-carboxylate reductase 1	protein-coding
107	chr1	200382907	200387400	+	0	NA	Intergenic	Intergenic	-5967	NM_001281293	23528	Hs.59757	NM_012482	ENSG00000162702	ZNF281	ZBP-99|ZNP-99	zinc finger protein 281	protein-coding
252	chr17	73851129	73853375	+	0	NA	promoter-TSS (NM_012478)	promoter-TSS (NM_012478)	265	NM_001348170	23558	Hs.514489	NM_012478	ENSG00000132471	WBP2	DFNB107|GRAMD6|WBP-2	WW domain binding protein 2	protein-coding
540	chr2	62998474	63003858	+	0	NA	intron (NM_001354213, intron 5 of 24)	intron (NM_001354213, intron 5 of 24)	67134	NM_001354217	23301	Hs.271667	NM_015252	ENSG00000115504	EHBP1	HPC12|NACSIN	EH domain binding protein 1	protein-coding
69	chr10	91845076	91853057	+	0	NA	Intergenic	MER4-int|LTR|ERV1	-131936	NR_110655	101926924	Hs.500498	NR_110655	ENSG00000226159	LINC01375	-	long intergenic non-protein coding RNA 1375	ncRNA
582	chr1	36928226	36931166	+	0	NA	intron (NM_031280, intron 1 of 7)	CpG	344	NM_031280	64960	Hs.352839	NM_031280	ENSG00000116898	MRPS15	DC37|MPR-S15|RPMS15|S15mt	mitochondrial ribosomal protein S15	protein-coding
442	chr9	131642959	131646029	+	0	NA	promoter-TSS (NM_001352994)	promoter-TSS (NM_001352994)	103	NM_019594	56262	Hs.643600	NM_019594	ENSG00000136802	LRRC8A	AGM5|LRRC8|SWELL1	leucine rich repeat containing 8 VRAC subunit A	protein-coding
359	chr11	118937783	118939525	+	0	NA	exon (NM_021729, exon 1 of 17)	exon (NM_021729, exon 1 of 17)	191	NM_021729	55823	Hs.234282	NM_021729	ENSG00000160695	VPS11	END1|HLD12|PEP5|RNF108|hVPS11	VPS11, CORVET/HOPS core subunit	protein-coding
597	chr7	99068407	99071993	+	0	NA	promoter-TSS (NM_001351004)	promoter-TSS (NM_001351004)	-315	NM_001013258	285989	Hs.440384	NM_213603	ENSG00000198556	ZNF789	-	zinc finger protein 789	protein-coding
265	chr16	22060585	22064338	+	0	NA	intron (NM_001164579, intron 1 of 2)	AluSz|SINE|Alu	-41398	NM_173615	146177	Hs.10697	NM_173615	ENSG00000175267	VWA3A	-	von Willebrand factor A domain containing 3A	protein-coding
64	chr11	65291632	65294431	+	0	NA	intron (NM_001048218, intron 1 of 17)	intron (NM_001048218, intron 1 of 17)	483	NM_020680	57410	Hs.238839	NM_020680	ENSG00000142186	SCYL1	GKLP|HT019|NKTL|NTKL|P105|SCAR21|TAPK|TEIF|TRAP	SCY1 like pseudokinase 1	protein-coding
882	chr7	76021056	76023982	+	0	NA	intron (NM_080744, intron 9 of 10)	CpG	-4322	NM_007155	7784	Hs.656137	NM_007155	ENSG00000188372	ZP3	OOMD3|ZP3A|ZP3B|ZPC|Zp-3	zona pellucida glycoprotein 3	protein-coding
690	chr17	37909284	37912313	+	0	NA	Intergenic	CpG	14578	NM_001242443	2886	Hs.86859	NM_005310	ENSG00000141738	GRB7	-	growth factor receptor bound protein 7	protein-coding
748	chr15	41164488	41167001	+	0	NA	intron (NM_133639, intron 2 of 2)	intron (NM_133639, intron 2 of 2)	743	NM_133639	171177	Hs.447901	NM_133639	ENSG00000104140	RHOV	ARHV|CHP|WRCH2	ras homolog family member V	protein-coding
920	chr3	156541324	156546217	+	0	NA	promoter-TSS (NM_001193283)	promoter-TSS (NM_001193283)	-326	NM_001004316	389170	Hs.478048	NM_001004316	ENSG00000197980	LEKR1	-	leucine, glutamate and lysine rich 1	protein-coding
22	chr5	170919280	170924190	+	0	NA	Intergenic	Intergenic	75068	NM_003862	8817	Hs.87191	NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
473	chr4	102120108	102123941	+	0	NA	intron (NM_000944, intron 1 of 13)	MIR3|SINE|MIR	40005	NR_107033	102465868		NR_107033	ENSG00000273882	MIR8066	hsa-mir-8066	microRNA 8066	ncRNA
708	chr1	33222694	33229235	+	0	NA	intron (NM_020888, intron 1 of 6)	intron (NM_020888, intron 1 of 6)	-5271	NM_001198972	57648	Hs.591502	NM_020888	ENSG00000162522	KIAA1522	-	KIAA1522	protein-coding
547	chr7	1013784	1015883	+	0	NA	intron (NM_001031617, intron 1 of 2)	CpG	402	NM_001031617	90639	Hs.121593	NM_001031617	ENSG00000240230	COX19	-	COX19, cytochrome c oxidase assembly factor	protein-coding
518	chr6	54833006	54838803	+	0	NA	Intergenic	Intergenic	124335	NM_001010872	222584	Hs.152423	NM_001010872	ENSG00000168143	FAM83B	C6orf143	family with sequence similarity 83 member B	protein-coding
679	chr4	48483903	48487008	+	0	NA	promoter-TSS (NM_152679)	promoter-TSS (NM_152679)	95	NM_152679	201780	Hs.132591	NM_152679	ENSG00000145248	SLC10A4	P4	solute carrier family 10 member 4	protein-coding
599	chr10	73005444	73008772	+	0	NA	intron (NM_170744, intron 1 of 16)	intron (NM_170744, intron 1 of 16)	-29123	NR_038453	728978	Hs.646725	NR_038453	ENSG00000237512	UNC5B-AS1	-	UNC5B antisense RNA 1	ncRNA
296	chr1	155909193	155912657	+	0	NA	promoter-TSS (NM_181885)	promoter-TSS (NM_181885)	-555	NM_181885	339403	Hs.449914	NM_181885	ENSG00000173080	RXFP4	GPCR142|GPR100|RLN3R2|RXFPR4	relaxin family peptide/INSL5 receptor 4	protein-coding
867	chr8	126695867	126701371	+	0	NA	Intergenic	Intergenic	254168	NM_001282985	10221	Hs.444947	NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
301	chr1	84762415	84771480	+	0	NA	promoter-TSS (NM_001134663)	promoter-TSS (NM_001134663)	-342	NM_001134663	148418	Hs.591445	NM_001010971	ENSG00000203943	SAMD13	HSD-41|HSD-42	sterile alpha motif domain containing 13	protein-coding
630	chr9	127702079	127706005	+	0	NA	promoter-TSS (NM_002077)	promoter-TSS (NM_002077)	-656	NM_002077	2800	Hs.59504	NM_002077	ENSG00000136935	GOLGA1	golgin-97	golgin A1	protein-coding
226	chr19	19625505	19628211	+	0	NA	promoter-TSS (NM_015965)	promoter-TSS (NM_015965)	-161	NM_015965	51079	Hs.534453	NM_015965	ENSG00000186010	NDUFA13	B16.6|CDA016|CGI-39|GRIM-19|GRIM19	NADH:ubiquinone oxidoreductase subunit A13	protein-coding
885	chr16	3183668	3186384	+	0	NA	promoter-TSS (NM_001134655)	promoter-TSS (NM_001134655)	-31	NM_004220	7760	Hs.115284	NM_004220	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
533	chr19	18410827	18412880	+	0	NA	Intergenic	Intergenic	18966	NR_036155	100422833		NR_036155	ENSG00000267959	MIR3188	mir-3188	microRNA 3188	ncRNA
543	chr6	159134030	159161861	+	0	NA	intron (NM_001009991, intron 10 of 16)	AluY|SINE|Alu	37840	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
127	chr10	75877484	75880010	+	0	NA	3' UTR (NM_003373, exon 21 of 21)	3' UTR (NM_003373, exon 21 of 21)	31802	NM_001320264	26985	Hs.500104	NM_012095	ENSG00000185009	AP3M1	-	adaptor related protein complex 3 subunit mu 1	protein-coding
462	chr2	65062693	65068854	+	0	NA	Intergenic	Intergenic	24992	NR_110224	101927438	Hs.580313	NR_110224	ENSG00000234572	LINC01800	-	long intergenic non-protein coding RNA 1800	ncRNA
486	chr12	57021917	57024592	+	0	NA	intron (NM_013449, intron 1 of 28)	intron (NM_013449, intron 1 of 28)	861	NM_001300905	11176	Hs.314263	NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
461	chr10	97452214	97454720	+	0	NA	exon (NM_015631, exon 1 of 14)	exon (NM_015631, exon 1 of 14)	433	NM_001143973	26123	Hs.438991	NM_015631	ENSG00000119977	TCTN3	C10orf61|JBTS18|OFD4|TECT3	tectonic family member 3	protein-coding
945	chr16	70332087	70334171	+	0	NA	promoter-TSS (NM_007242)	promoter-TSS (NM_007242)	67	NM_001014449	11269	Hs.221761	NM_007242	ENSG00000157349	DDX19B	DBP5|DDX19|RNAh	DEAD-box helicase 19B	protein-coding
974	chr9	132401587	132405074	+	0	NA	intron (NM_177999, intron 1 of 4)	intron (NM_177999, intron 1 of 4)	1118	NM_001202403	140459	Hs.125037	NM_017873	ENSG00000148331	ASB6	-	ankyrin repeat and SOCS box containing 6	protein-coding
929	chr10	97887932	97891630	+	0	NA	promoter-TSS (NM_001278525)	promoter-TSS (NM_001278525)	-32	NM_001278525	9849	Hs.600823	NM_014803	ENSG00000177853	ZNF518A	ZNF518	zinc finger protein 518A	protein-coding
192	chr5	137876995	137880913	+	0	NA	promoter-TSS (NM_001256302)	promoter-TSS (NM_001256302)	35	NM_001291975	2107	Hs.483494	NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
844	chr16	29825589	29838269	+	0	NA	3' UTR (NM_024516, exon 3 of 3)	3' UTR (NM_024516, exon 3 of 3)	214	NM_017458	9961	Hs.632177	NM_005115	ENSG00000013364	MVP	LRP|VAULT1	major vault protein	protein-coding
52	chr19	6423067	6426846	+	0	NA	promoter-TSS (NM_003685)	promoter-TSS (NM_003685)	-134	NM_003685	8570	Hs.727344	NM_003685	ENSG00000088247	KHSRP	FBP2|FUBP2|KSRP	KH-type splicing regulatory protein	protein-coding
185	chr8	94750753	94754633	+	0	NA	non-coding (NR_027259, exon 1 of 1)	non-coding (NR_027259, exon 1 of 1)	354	NR_027259	55472	Hs.192788	NM_018608	ENSG00000279331	RBM12B-AS1	C8orf39|PRO1905	RBM12B antisense RNA 1	ncRNA
982	chr9	38006505	38010367	+	0	NA	intron (NM_003028, intron 2 of 5)	intron (NM_003028, intron 2 of 5)	60774	NM_003028	6461	Hs.521482	NM_003028	ENSG00000107338	SHB	bA3J10.2	SH2 domain containing adaptor protein B	protein-coding
723	chr8	94922934	94936686	+	0	NA	intron (NM_001161781, intron 1 of 1)	CpG	531	NM_001161781	54704	Hs.22265	NM_018444	ENSG00000164951	PDP1	PDH|PDP|PDPC|PPM2A|PPM2C	pyruvate dehyrogenase phosphatase catalytic subunit 1	protein-coding
524	chr11	59381601	59384177	+	0	NA	exon (NM_002556, exon 1 of 14)	exon (NM_002556, exon 1 of 14)	728	NM_002556	5007	Hs.597091	NM_002556	ENSG00000110048	OSBP	OSBP1	oxysterol binding protein	protein-coding
345	chr1	178510612	178512855	+	0	NA	promoter-TSS (NR_033186)	promoter-TSS (NR_033186)	-198	NR_033186	400798	Hs.668085	NM_207467	ENSG00000213057	C1orf220	-	chromosome 1 open reading frame 220 (putative)	ncRNA
914	chr1	8224564	8231385	+	0	NA	Intergenic	Intergenic	-40758	NR_125998	102724539	Hs.516816	NR_125998	ENSG00000227634	LINC01714	-	long intergenic non-protein coding RNA 1714	ncRNA
777	chr1	169762662	169765657	+	0	NA	promoter-TSS (NM_001320201)	promoter-TSS (NM_001320201)	19	NM_001320050	55732	Hs.443551	NM_018186	ENSG00000000460	C1orf112	-	chromosome 1 open reading frame 112	protein-coding
879	chr3	194038287	194049408	+	0	NA	Intergenic	Intergenic	-13254	NR_024480	100131551	Hs.128066	NR_024480	ENSG00000214145	LINC00887	HEIRCC	long intergenic non-protein coding RNA 887	ncRNA
106	chr9	132499435	132501189	+	0	NA	TTS (NM_004878)	TTS (NM_004878)	15032	NM_004878	9536	Hs.146688	NM_004878	ENSG00000148344	PTGES	MGST-IV|MGST1-L1|MGST1L1|MPGES|PGES|PIG12|PP102|PP1294|TP53I12|mPGES-1	prostaglandin E synthase	protein-coding
46	chr9	139920848	139924184	+	0	NA	intron (NM_207511, intron 1 of 2)	CpG	224	NM_001606	20	Hs.421202	NM_001606	ENSG00000107331	ABCA2	ABC2	ATP binding cassette subfamily A member 2	protein-coding
665	chr22	45640079	45644554	+	0	NA	Intergenic	Intergenic	-5666	NM_001009880	23313	Hs.592207	NM_015264	ENSG00000100364	KIAA0930	C22orf9|LSC3	KIAA0930	protein-coding
382	chr10	103910024	103913891	+	0	NA	promoter-TSS (NM_004741)	promoter-TSS (NM_004741)	24	NM_001284389	9221	Hs.523238	NM_004741	ENSG00000166197	NOLC1	NOPP130|NOPP140|NS5ATP13|P130	nucleolar and coiled-body phosphoprotein 1	protein-coding
584	chr3	50605721	50608070	+	0	NA	5' UTR (NM_016173, exon 1 of 11)	5' UTR (NM_016173, exon 1 of 11)	312	NM_001317851	51409	Hs.517987	NM_016173	ENSG00000114735	HEMK1	HEMK|MTQ1	HemK methyltransferase family member 1	protein-coding
560	chr12	89362086	89365372	+	0	NA	Intergenic	MLT2A1|LTR|ERVL	49740	NR_038385	728084	Hs.132563	NR_038385	ENSG00000246363	LINC02458	-	long intergenic non-protein coding RNA 2458	ncRNA
477	chr3	127793071	127795438	+	0	NA	promoter-TSS (NR_046645)	promoter-TSS (NR_046645)	-399	NR_046645	100874089	Hs.581603	NR_046645	ENSG00000239608	RUVBL1-AS1	-	RUVBL1 antisense RNA 1	ncRNA
290	chr2	65084549	65088329	+	0	NA	intron (NR_110224, intron 1 of 4)	intron (NR_110224, intron 1 of 4)	4326	NR_110224	101927438	Hs.580313	NR_110224	ENSG00000234572	LINC01800	-	long intergenic non-protein coding RNA 1800	ncRNA
796	chr9	132220653	132224356	+	0	NA	Intergenic	Intergenic	-28435	NR_038955	100506190	Hs.529860	NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
538	chr3	155569445	155573833	+	0	NA	exon (NM_001190992, exon 1 of 7)	exon (NM_001190992, exon 1 of 7)	609	NM_004733	9197	Hs.478031	NM_004733	ENSG00000169359	SLC33A1	ACATN|AT-1|AT1|CCHLND|SPG42	solute carrier family 33 member 1	protein-coding
453	chr1	11723509	11725680	+	0	NA	intron (NM_018438, intron 1 of 5)	CpG	444	NM_018438	26270	Hs.464419	NM_018438	ENSG00000116663	FBXO6	FBG2|FBS2|FBX6|Fbx6b	F-box protein 6	protein-coding
800	chr6	27341153	27344319	+	0	NA	5' UTR (NM_001322288, exon 1 of 4)	5' UTR (NM_001322288, exon 1 of 4)	322	NM_001322288	346157	Hs.651176	NM_001013719	ENSG00000124613	ZNF391	dJ153G14.3	zinc finger protein 391	protein-coding
24	chr12	76336748	76350450	+	0	NA	Intergenic	Intergenic	81957	NM_007350	22822	Hs.602085	NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
554	chr5	137909537	137912798	+	0	NA	5' UTR (NM_004134, exon 1 of 17)	5' UTR (NM_004134, exon 1 of 17)	151	NM_004134	3313	Hs.184233	NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
56	chr7	131205378	131208217	+	0	NA	intron (NM_001018111, intron 1 of 8)	L1MD3|LINE|L1	34579	NM_005397	5420	Hs.744213	NM_005397	ENSG00000128567	PODXL	Gp200|PC|PCLP|PCLP-1	podocalyxin like	protein-coding
913	chr16	67874788	67877354	+	0	NA	promoter-TSS (NM_020457)	promoter-TSS (NM_020457)	-142	NM_020457	57215	Hs.632200	NM_020457	ENSG00000168286	THAP11	CTG-B43a|CTG-B45d|HRIHFB2206|RONIN	THAP domain containing 11	protein-coding
673	chr11	64850204	64853040	+	0	NA	promoter-TSS (NM_080668)	promoter-TSS (NM_080668)	-7	NM_080668	113130	Hs.434886	NM_080668	ENSG00000146670	CDCA5	SORORIN	cell division cycle associated 5	protein-coding
509	chr10	75756777	75760386	+	0	NA	intron (NM_014000, intron 1 of 21)	intron (NM_014000, intron 1 of 21)	709	NM_014000	7414	Hs.643896	NM_003373	ENSG00000035403	VCL	CMD1W|CMH15|HEL114|MV|MVCL	vinculin	protein-coding
7	chr22	42015019	42019144	+	0	NA	promoter-TSS (NM_001469)	promoter-TSS (NM_001469)	-20	NM_015704	27351	Hs.570455	NM_015704	ENSG00000100418	DESI1	D15Wsu75e|DESI2|DJ347H13.4|DeSI-1|FAM152B|PPPDE2	desumoylating isopeptidase 1	protein-coding
313	chr8	144360086	144366824	+	0	NA	intron (NR_120682, intron 1 of 2)	LTR50|LTR|ERVL	415	NR_120682	100507316	Hs.446671	NR_120682	ENSG00000253716	MINCR	LINC01604	MYC-induced long non-coding RNA	ncRNA
427	chr7	151121488	151127824	+	0	NA	Intergenic	Intergenic	6069	NR_037468	100500835		NR_037468	ENSG00000265810	MIR3907	-	microRNA 3907	ncRNA
852	chr16	775024	781543	+	0	NA	intron (NM_001290139, intron 4 of 8)	CpG-8463	1037	NM_032304	84264	Hs.124015	NM_032304	ENSG00000103253	HAGHL	-	hydroxyacylglutathione hydrolase like	protein-coding
789	chr17	49229169	49232685	+	0	NA	promoter-TSS (NM_198175)	promoter-TSS (NM_198175)	7	NM_198175	4830	Hs.463456	NM_000269	ENSG00000239672	NME1	AWD|GAAD|NB|NBS|NDKA|NDPK-A|NDPKA|NM23|NM23-H1	NME/NM23 nucleoside diphosphate kinase 1	protein-coding
35	chrX	119075830	119078334	+	0	NA	intron (NM_024528, intron 1 of 8)	intron (NM_024528, intron 1 of 8)	653	NM_024528	79576	Hs.522771	NM_024528	ENSG00000101882	NKAP	-	NFKB activating protein	protein-coding
873	chr1	52519730	52523994	+	0	NA	promoter-TSS (NR_046405)	promoter-TSS (NR_046405)	5	NM_152265	91408	Hs.429839	NM_152265	ENSG00000134717	BTF3L4	-	basic transcription factor 3 like 4	protein-coding
565	chr2	74780377	74783869	+	0	NA	intron (NM_001318867, intron 1 of 4)	CpG	836	NM_001318868	1796	Hs.103854	NM_001381	ENSG00000115325	DOK1	P62DOK|pp62	docking protein 1	protein-coding
757	chr19	50378311	50383352	+	0	NA	promoter-TSS (NM_001098632)	promoter-TSS (NM_001098632)	149	NM_024682	79735	Hs.631587	NM_024682	ENSG00000104946	TBC1D17	-	TBC1 domain family member 17	protein-coding
659	chr1	161052069	161055228	+	0	NA	intron (NM_030916, intron 1 of 8)	intron (NM_030916, intron 1 of 8)	5737	NM_030916	81607	Hs.492490	NM_030916	ENSG00000143217	NECTIN4	EDSS1|LNIR|PRR4|PVRL4|nectin-4	nectin cell adhesion molecule 4	protein-coding
557	chr13	73994377	73998255	+	0	NA	Intergenic	Intergenic	-142065	NR_047009	100874155	Hs.672679	NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
927	chr12	76281192	76291500	+	0	NA	Intergenic	Intergenic	139210	NM_007350	22822	Hs.602085	NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
303	chr17	43237186	43241166	+	0	NA	promoter-TSS (NM_001303441)	promoter-TSS (NM_001303441)	-36	NM_001303440	124790	Hs.56382	NM_144608	ENSG00000168517	HEXIM2	L3	hexamethylene bisacetamide inducible 2	protein-coding
847	chr16	30912452	30916458	+	0	NA	3' UTR (NM_001142544, exon 3 of 3)	3' UTR (NM_001142544, exon 3 of 3)	6527	NM_001330	1489	Hs.483811	NM_001330	ENSG00000150281	CTF1	CT-1|CT1	cardiotrophin 1	protein-coding
997	chr2	113913554	113916510	+	0	NA	Intergenic	CpG	-16528	NM_012455	23550	Hs.516306	NM_012455	ENSG00000125637	PSD4	EFA6B|TIC	pleckstrin and Sec7 domain containing 4	protein-coding
806	chr1	228288389	228293229	+	0	NA	intron (NM_024319, intron 1 of 7)	CpG-2288	354	NM_024319	79169	Hs.445952	NM_024319	ENSG00000143793	C1orf35	MMTAG2	chromosome 1 open reading frame 35	protein-coding
204	chr10	71904343	71908206	+	0	NA	exon (NM_001040273, exon 1 of 2)	exon (NM_001040273, exon 1 of 2)	222	NR_073592	219743	Hs.533655	NM_173555	ENSG00000156521	TYSND1	NET41	trypsin domain containing 1	protein-coding
480	chr12	66560882	66564646	+	0	NA	intron (NM_001282606, intron 1 of 7)	intron (NM_001282606, intron 1 of 7)	1088	NM_001282606	51643	Hs.505934	NM_016056	ENSG00000155957	TMBIM4	CGI-119|GAAP|LFG4|S1R|ZPRO	transmembrane BAX inhibitor motif containing 4	protein-coding
835	chr8	141246420	141250510	+	0	NA	intron (NM_001321646, intron 15 of 21)	intron (NM_001321646, intron 15 of 21)	-137831	NR_144431	359809	Hs.26814	NR_144431	ENSG00000282164	PEG13	-	paternally expressed 13	ncRNA
986	chr12	6469175	6474675	+	0	NA	intron (NM_001038, intron 3 of 12)	AluJb|SINE|Alu	12465	NM_001159576	6337	Hs.591047	NM_001038	ENSG00000111319	SCNN1A	BESC2|ENaCa|ENaCalpha|SCNEA|SCNN1	sodium channel epithelial 1 alpha subunit	protein-coding
635	chr20	33679031	33681938	+	0	NA	exon (NM_015638, exon 1 of 19)	exon (NM_015638, exon 1 of 19)	134	NM_015638	26133	Hs.168073	NM_015638	ENSG00000100991	TRPC4AP	C20orf188|PPP1R158|TRRP4AP|TRUSS	transient receptor potential cation channel subfamily C member 4 associated protein	protein-coding
124	chr19	39137762	39144850	+	0	NA	intron (NM_004924, intron 1 of 20)	intron (NM_004924, intron 1 of 20)	3050	NM_004924	81	Hs.270291	NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
201	chr17	73839681	73843325	+	0	NA	promoter-TSS (NM_199242)	promoter-TSS (NM_199242)	-705	NM_199242	201294	Hs.41045	NM_199242	ENSG00000092929	UNC13D	FHL3|HLH3|HPLH3|Munc13-4	unc-13 homolog D	protein-coding
172	chr17	73715769	73720833	+	0	NA	intron (NM_000213, intron 1 of 39)	intron (NM_000213, intron 1 of 39)	893	NM_001321123	3691	Hs.632226	NM_000213	ENSG00000132470	ITGB4	CD104|GP150	integrin subunit beta 4	protein-coding
625	chr6	27247753	27249966	+	0	NA	Intergenic	L1M2|LINE|L1	31152	NM_033482	94026	Hs.729955	NM_033482	ENSG00000158553	POM121L2	POM121-L|POM121L	POM121 transmembrane nucleoporin like 2	protein-coding
308	chr19	56164111	56169214	+	0	NA	intron (NM_001012478, intron 1 of 11)	CpG-14459	1246	NM_007279	11338	Hs.528007	NM_007279	ENSG00000063244	U2AF2	U2AF65	U2 small nuclear RNA auxiliary factor 2	protein-coding
291	chr19	10857651	10861662	+	0	NA	intron (NM_001005360, intron 1 of 20)	intron (NM_001005360, intron 1 of 20)	30576	NR_030368	693223		NR_030368	ENSG00000207972	MIR638	MIRN638|hsa-mir-638	microRNA 638	ncRNA
261	chr17	48783258	48787363	+	0	NA	promoter-TSS (NM_052855)	promoter-TSS (NM_052855)	-40	NM_052855	91369	Hs.463426	NM_052855	ENSG00000154945	ANKRD40	-	ankyrin repeat domain 40	protein-coding
528	chr16	31518333	31521345	+	0	NA	promoter-TSS (NM_022744)	promoter-TSS (NM_022744)	-99	NM_022744	64755	Hs.9003	NM_022744	ENSG00000140688	C16orf58	RUS	chromosome 16 open reading frame 58	protein-coding
716	chr12	112845762	112848033	+	0	NA	5' UTR (NM_001320138, exon 1 of 7)	5' UTR (NM_001320138, exon 1 of 7)	226	NM_001320138	6128	Hs.528668	NM_000970	ENSG00000089009	RPL6	L6|SHUJUN-2|TAXREB107|TXREB1	ribosomal protein L6	protein-coding
27	chr3	185261235	185264362	+	0	NA	intron (NM_139248, intron 1 of 9)	intron (NM_139248, intron 1 of 9)	7571	NM_139248	200879	Hs.68864	NM_139248	ENSG00000163898	LIPH	AH|ARWH2|HYPT7|LAH2|LPDLR|PLA1B|mPA-PLA1	lipase H	protein-coding
33	chr9	34071977	34074348	+	0	NA	Intergenic	Intergenic	-24215	NM_018449	55833	Hs.493739	NM_018449	ENSG00000137073	UBAP2	UBAP-2	ubiquitin associated protein 2	protein-coding
680	chr6	159180804	159196127	+	0	NA	exon (NM_003379, exon 12 of 13)	exon (NM_003379, exon 12 of 13)	-2680	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
643	chr17	7648698	7650536	+	0	NA	intron (NM_020877, intron 12 of 85)	intron (NM_020877, intron 12 of 85)	-8021	NR_002778	118432	Hs.658086	NR_002778	ENSG00000240480	RPL29P2	RPL29_10_1510	ribosomal protein L29 pseudogene 2	pseudo
899	chr15	74725180	74728326	+	0	NA	promoter-TSS (NM_003612)	promoter-TSS (NM_003612)	-453	NM_003612	8482	Hs.24640	NM_003612	ENSG00000138623	SEMA7A	CD108|CDw108|H-SEMA-K1|H-Sema-L|JMH|SEMAK1|SEMAL	semaphorin 7A (John Milton Hagen blood group)	protein-coding
416	chr12	96586353	96594203	+	0	NA	intron (NM_005230, intron 1 of 4)	intron (NM_005230, intron 1 of 4)	2118	NM_005230	2004	Hs.46523	NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ELK3, ETS transcription factor	protein-coding
779	chr10	105504371	105506714	+	0	NA	promoter-TSS (NR_038940)	promoter-TSS (NR_038940)	-995	NR_038940	100505839	Hs.655149	NR_038940	ENSG00000280693	SH3PXD2A-AS1	-	SH3PXD2A antisense RNA 1	ncRNA
179	chr17	40713093	40721612	+	0	NA	intron (NM_001042529, intron 7 of 9)	intron (NM_001042529, intron 7 of 9)	-1726	NM_198204	6945	Hs.383019	NM_170607	ENSG00000108788	MLX	MAD7|MXD7|TCFL4|TF4|bHLHd13	MLX, MAX dimerization protein	protein-coding
96	chr17	73118696	73123107	+	0	NA	intron (NM_024585, intron 2 of 2)	MIR|SINE|MIR	6989	NM_014595	30833	Hs.67201	NM_014595	ENSG00000125458	NT5C	DNT|DNT1|HEL74|P5N2|PN-I|PN-II|UMPH2|cdN|dNT-1	5', 3'-nucleotidase, cytosolic	protein-coding
50	chr2	20782438	20785648	+	0	NA	Intergenic	Intergenic	8265	NR_046836	100874343	Hs.591546	NR_046836	ENSG00000231948	HS1BP3-IT1	-	HS1BP3 intronic transcript 1	ncRNA
759	chr7	27809019	27812877	+	0	NA	intron (NM_001079864, intron 5 of 16)	intron (NM_001079864, intron 5 of 16)	31234	NM_001206902	8887	Hs.34576	NM_006024	ENSG00000106052	TAX1BP1	CALCOCO3|T6BP|TXBP151	Tax1 binding protein 1	protein-coding
678	chr3	57111645	57113791	+	0	NA	intron (NM_001128615, intron 1 of 12)	CpG	618	NM_001128615	50650	Hs.476402	NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
591	chr22	31475242	31482660	+	0	NA	exon (NM_001207017, exon 1 of 21)	exon (NM_001207017, exon 1 of 21)	105	NM_001207017	6525	Hs.149098	NM_006932	ENSG00000183963	SMTN	-	smoothelin	protein-coding
993	chr20	52224846	52230085	+	0	NA	intron (NR_134576, intron 1 of 2)	AluY|SINE|Alu	2572	NR_134576	105372672	Hs.259350	NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
793	chr7	101928723	101931936	+	0	NA	5' UTR (NM_001359228, exon 1 of 7)	5' UTR (NM_001359228, exon 1 of 7)	175	NM_001359230	10603	Hs.489448	NM_020979	ENSG00000160999	SH2B2	APS	SH2B adaptor protein 2	protein-coding
429	chr11	66245966	66249020	+	0	NA	promoter-TSS (NM_130443)	promoter-TSS (NM_130443)	9	NM_005700	10072	Hs.502914	NM_005700	ENSG00000254986	DPP3	DPPIII	dipeptidyl peptidase 3	protein-coding
546	chr7	100025099	100029397	+	0	NA	promoter-TSS (NM_017984)	promoter-TSS (NM_017984)	-6	NM_019606	56257	Hs.178011	NM_019606	ENSG00000146834	MEPCE	BCDIN3	methylphosphate capping enzyme	protein-coding
447	chr10	114317044	114319849	+	0	NA	intron (NM_145206, intron 5 of 7)	intron (NM_145206, intron 5 of 7)	-75483	NR_036177	100422909		NR_036177	ENSG00000264763	MIR4295	-	microRNA 4295	ncRNA
601	chr3	50364112	50366810	+	0	NA	exon (NM_007275, exon 1 of 3)	exon (NM_007275, exon 1 of 3)	208	NM_007275	11334	Hs.517981	NM_007275	ENSG00000114383	TUSC2	C3orf11|FUS1|PAP|PDAP2	tumor suppressor 2, mitochondrial calcium regulator	protein-coding
776	chr17	16929978	16936959	+	0	NA	Intergenic	L2a|LINE|L2	-12606	NM_015134	23164	Hs.462341	NM_015134	ENSG00000133030	MPRIP	M-RIP|MRIP|RHOIP3|RIP3|p116Rip	myosin phosphatase Rho interacting protein	protein-coding
802	chr17	74665955	74669661	+	0	NA	promoter-TSS (NR_130916)	promoter-TSS (NR_130916)	-202	NR_130916	105274304	Hs.572495	NR_130916	ENSG00000261335	LOC105274304	-	uncharacterized LOC105274304	ncRNA
906	chr1	224516824	224519546	+	0	NA	promoter-TSS (NM_001243147)	promoter-TSS (NM_001243147)	-294	NM_001243147	4931	Hs.497867	NM_002533	ENSG00000143748	NVL	NVL2	nuclear VCP-like	protein-coding
641	chr22	42083199	42086135	+	0	NA	intron (NM_005008, intron 1 of 3)	CpG	246	NM_005008	4809	Hs.182255	NM_005008	ENSG00000100138	SNU13	15.5K|FA-1|FA1|NHP2L1|NHPX|OTK27|SNRNP15-5|SPAG12|SSFA1	small nuclear ribonucleoprotein 13	protein-coding
955	chr7	100461941	100467030	+	0	NA	promoter-TSS (NM_003302)	promoter-TSS (NM_003302)	-465	NM_003302	7205	Hs.534360	NM_003302	ENSG00000087077	TRIP6	OIP-1|OIP1|TRIP-6|TRIP6i2|ZRP-1	thyroid hormone receptor interactor 6	protein-coding
59	chr19	2094500	2097297	+	0	NA	promoter-TSS (NM_001039846)	promoter-TSS (NM_001039846)	371	NM_130807	126308	Hs.744938	NM_130807	ENSG00000172081	MOB3A	MOB-LAK|MOB1C|MOBKL2A|moblak	MOB kinase activator 3A	protein-coding
354	chr1	154970607	154978880	+	0	NA	promoter-TSS (NM_001252406)	promoter-TSS (NM_001252406)	-363	NR_049765	51043	Hs.729279	NM_001252406	ENSG00000160685	ZBTB7B	CKROX|THPOK|ZBTB15|ZFP-67|ZFP67|ZNF857B|c-KROX|hcKROX	zinc finger and BTB domain containing 7B	protein-coding
865	chr11	67167705	67170781	+	0	NA	exon (NM_002708, exon 1 of 7)	exon (NM_002708, exon 1 of 7)	133	NM_001008709	5499	Hs.183994	NM_002708	ENSG00000172531	PPP1CA	PP-1A|PP1A|PP1alpha|PPP1A	protein phosphatase 1 catalytic subunit alpha	protein-coding
833	chr17	79677158	79681936	+	0	NA	exon (NM_012140, exon 1 of 11)	exon (NM_012140, exon 1 of 11)	281	NM_001270953	1468	Hs.548187	NM_012140	ENSG00000183048	SLC25A10	DIC	solute carrier family 25 member 10	protein-coding
500	chr8	95907345	95909977	+	0	NA	intron (NM_001354524, intron 1 of 11)	CpG-25869	665	NM_001354516	137682	Hs.435500	NM_152416	ENSG00000156170	NDUFAF6	C8orf38	NADH:ubiquinone oxidoreductase complex assembly factor 6	protein-coding
988	chr13	49547768	49551990	+	0	NA	promoter-TSS (NM_001278438)	promoter-TSS (NM_001278438)	-169	NM_001079673	22862	Hs.508010	NM_014923	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
376	chr12	76410492	76427782	+	0	NA	TTS (NM_007350)	TTS (NM_007350)	6419	NM_007350	22822	Hs.602085	NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
931	chr17	62221348	62226915	+	0	NA	TTS (NM_001288733)	TTS (NM_001288733)	432	NR_002995	677842	Hs.405444	NR_002995	ENSG00000277887	SNORA50C	ACA62|SNORA76|SNORA76C	small nucleolar RNA, H/ACA box 50C	snoRNA
893	chr11	102321414	102325151	+	0	NA	promoter-TSS (NR_135053)	promoter-TSS (NR_135053)	-368	NR_135053	101928424	Hs.647210	NR_135053	ENSG00000255337	LOC101928424	-	uncharacterized LOC101928424	ncRNA
969	chr17	39056386	39062492	+	0	NA	Intergenic	Intergenic	-17944	NM_019010	54474	Hs.84905	NM_019010	ENSG00000171431	KRT20	CD20|CK-20|CK20|K20|KRT21	keratin 20	protein-coding
862	chr19	12720304	12723318	+	0	NA	promoter-TSS (NM_020714)	promoter-TSS (NM_020714)	79	NM_153358	163049	Hs.720677	NM_153358	ENSG00000173875	ZNF791	-	zinc finger protein 791	protein-coding
689	chr12	15849860	15857771	+	0	NA	intron (NM_004447, intron 1 of 20)	intron (NM_004447, intron 1 of 20)	88695	NM_004447	2059	Hs.591160	NM_004447	ENSG00000151491	EPS8	DFNB102	epidermal growth factor receptor pathway substrate 8	protein-coding
611	chr10	3817311	3820179	+	0	NA	non-coding (NR_027653, exon 4 of 4)	non-coding (NR_027653, exon 4 of 4)	8728	NR_027653	1316	Hs.4055	NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	Kruppel like factor 6	protein-coding
861	chr1	86171391	86175602	+	0	NA	exon (NM_001170670, exon 2 of 11)	exon (NM_001170670, exon 2 of 11)	620	NM_001170670	54680	Hs.5111	NM_017953	ENSG00000117174	ZNHIT6	BCD1|C1orf181|NY-BR-75	zinc finger HIT-type containing 6	protein-coding
37	chr11	703580	709145	+	0	NA	intron (NM_022772, intron 1 of 20)	CpG	242	NM_022772	64787	Hs.55016	NM_022772	ENSG00000177106	EPS8L2	DFNB106|EPS8R2	EPS8 like 2	protein-coding
658	chr9	88895461	88898511	+	0	NA	intron (NM_030940, intron 1 of 3)	CpG	504	NM_030940	81689	Hs.449291	NM_030940	ENSG00000135070	ISCA1	HBLD2|ISA1|MMDS5|hIscA	iron-sulfur cluster assembly 1	protein-coding
697	chr17	3789877	3799005	+	0	NA	promoter-TSS (NM_172206)	promoter-TSS (NM_172206)	-404	NM_172206	84254	Hs.8417	NM_032294	ENSG00000004660	CAMKK1	CAMKKA	calcium/calmodulin dependent protein kinase kinase 1	protein-coding
315	chr7	101738771	101742803	+	0	NA	intron (NM_001913, intron 5 of 22)	intron (NM_001913, intron 5 of 22)	-187566	NM_020979	10603	Hs.489448	NM_020979	ENSG00000160999	SH2B2	APS	SH2B adaptor protein 2	protein-coding
73	chr2	46523915	46526430	+	0	NA	intron (NM_001430, intron 1 of 15)	CpG	631	NM_001430	2034	Hs.468410	NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
905	chr2	9970176	9972057	+	0	NA	Intergenic	Intergenic	-12455	NM_001318977	9014	Hs.584833	NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding
63	chr11	64887933	64891422	+	0	NA	promoter-TSS (NM_004927)	promoter-TSS (NM_004927)	-5	NM_001997	2197	Hs.387208	NM_001997	ENSG00000149806	FAU	FAU1|Fub1|Fubi|MNSFbeta|RPS30|S30|asr1	FAU, ubiquitin like and ribosomal protein S30 fusion	protein-coding
360	chr3	5035499	5038530	+	0	NA	Intergenic	Intergenic	-15368	NR_125915	100507582	Hs.434505	NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
71	chr17	74022126	74027095	+	0	NA	Intergenic	Intergenic	-1077	NM_001988	2125	Hs.500635	NM_001988	ENSG00000167880	EVPL	EVPK	envoplakin	protein-coding
575	chr19	17558316	17562609	+	0	NA	Intergenic	AluJo|SINE|Alu	-1086	NM_001190844	100130519	Hs.436603	NM_001190844	ENSG00000188051	TMEM221	-	transmembrane protein 221	protein-coding
297	chr7	157100506	157104383	+	0	NA	Intergenic	Intergenic	-27266	NM_005494	10049	Hs.490745	NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
458	chr12	57471066	57473297	+	0	NA	intron (NM_001130963, intron 1 of 8)	intron (NM_001130963, intron 1 of 8)	393	NM_015257	23306	Hs.591040	NM_015257	ENSG00000166881	NEMP1	TMEM194|TMEM194A	nuclear envelope integral membrane protein 1	protein-coding
115	chr1	6843616	6846437	+	0	NA	promoter-TSS (NR_146204)	promoter-TSS (NR_146204)	14	NR_149049	110841581		NR_149049		CAMTA1-DT	lncCAMTA1	CAMTA1 divergent transcript	ncRNA
331	chr16	30380433	30384056	+	0	NA	promoter-TSS (NM_015527)	promoter-TSS (NM_015527)	-11	NM_001324459	29895	Hs.50889	NM_013292	ENSG00000180209	MYLPF	HUMMLC2B|MLC2B|MRLC2|MYL11	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding
390	chr17	7347560	7349982	+	0	NA	TTS (NM_004112)	TTS (NM_004112)	365	NM_000747	1140	Hs.330386	NM_000747	ENSG00000170175	CHRNB1	ACHRB|CHRNB|CMS1D|CMS2A|CMS2C|SCCMS	cholinergic receptor nicotinic beta 1 subunit	protein-coding
738	chr17	8197471	8200492	+	0	NA	promoter-TSS (NM_001320872)	promoter-TSS (NM_001320872)	-320	NM_001320872	399512	Hs.118918	NM_201520	ENSG00000125434	SLC25A35	-	solute carrier family 25 member 35	protein-coding
234	chr1	16498307	16504403	+	0	NA	Intergenic	Intergenic	-18751	NM_001329090	1969	Hs.171596	NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
135	chr12	123941583	123944590	+	0	NA	intron (NR_104103, intron 1 of 1)	intron (NR_104103, intron 1 of 1)	435	NM_022717	11066	Hs.632738	NM_007020	ENSG00000184209	SNRNP35	HM-1|U1SNRNPBP	small nuclear ribonucleoprotein U11/U12 subunit 35	protein-coding
12	chr17	36902443	36910508	+	0	NA	non-coding (NR_149004, exon 1 of 1)	non-coding (NR_149004, exon 1 of 1)	1188	NR_149004	100287808	Hs.371617	NR_149004		LOC100287808	-	uncharacterized LOC100287808	ncRNA
468	chr3	57787584	57792647	+	0	NA	intron (NM_007159, intron 1 of 20)	intron (NM_007159, intron 1 of 20)	47132	NM_001304421	7871	Hs.476432	NM_007159	ENSG00000163681	SLMAP	SLAP	sarcolemma associated protein	protein-coding
653	chr10	127582820	127586501	+	0	NA	promoter-TSS (NM_145235)	promoter-TSS (NM_145235)	-444	NM_001350939	92565	Hs.352591	NM_145235	ENSG00000203780	FANK1	HSD13	fibronectin type III and ankyrin repeat domains 1	protein-coding
834	chr2	10196520	10199599	+	0	NA	3' UTR (NM_001037160, exon 3 of 3)	3' UTR (NM_001037160, exon 3 of 3)	13687	NM_001177718	8462	Hs.12229	NM_003597	ENSG00000172059	KLF11	FKLF|FKLF1|MODY7|TIEG2|Tieg3	Kruppel like factor 11	protein-coding
944	chr19	1025117	1029761	+	0	NA	intron (NM_001303499, intron 1 of 6)	FLAM_C|SINE|Alu	1165	NM_004368	1265	Hs.651512	NM_004368	ENSG00000064666	CNN2	-	calponin 2	protein-coding
624	chr2	85694170	85697398	+	0	NA	Intergenic	Intergenic	49730	NM_201594	284948	Hs.209542	NM_198482	ENSG00000152292	SH2D6	-	SH2 domain containing 6	protein-coding
989	chr1	15850576	15855653	+	0	NA	promoter-TSS (NR_109898)	promoter-TSS (NR_109898)	-194	NR_109898	23341	Hs.655410	NM_015291	ENSG00000116138	DNAJC16	-	DnaJ heat shock protein family (Hsp40) member C16	protein-coding
167	chr1	181055542	181060155	+	0	NA	5' UTR (NM_016545, exon 1 of 1)	5' UTR (NM_016545, exon 1 of 1)	210	NM_016545	51278	Hs.15725	NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
54	chr12	6322454	6327027	+	0	NA	intron (NM_001769, intron 1 of 7)	intron (NM_001769, intron 1 of 7)	15258	NM_001769	928	Hs.114286	NM_001769	ENSG00000010278	CD9	BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29	CD9 molecule	protein-coding
695	chr5	139675758	139683687	+	0	NA	intron (NM_002622, intron 2 of 3)	AluSz|SINE|Alu	2967	NM_002622	5201	Hs.483564	NM_002622	ENSG00000113068	PFDN1	PDF|PFD1	prefoldin subunit 1	protein-coding
246	chr1	86041454	86043711	+	0	NA	intron (NM_001134445, intron 1 of 6)	CpG	1464	NM_001134445	23576	Hs.713411	NM_012137	ENSG00000153904	DDAH1	DDAH|DDAH-1|DDAHI|HEL-S-16	dimethylarginine dimethylaminohydrolase 1	protein-coding
138	chr6	27774484	27785509	+	0	NA	Intergenic	Intergenic	2154	NM_003536	8357	Hs.591778	NM_003536	ENSG00000278828	HIST1H3H	H3/k|H3F1K|H3FK	histone cluster 1 H3 family member h	protein-coding
705	chr19	10828156	10830522	+	0	NA	TTS (NR_030368)	TTS (NR_030368)	259	NR_030368	693223		NR_030368	ENSG00000207972	MIR638	MIRN638|hsa-mir-638	microRNA 638	ncRNA
229	chr11	33081483	33085285	+	0	NA	intron (NM_001145541, intron 7 of 9)	AluSz6|SINE|Alu	-14312	NR_015451	283267	Hs.533701	NR_015451	ENSG00000280798	LINC00294	NCRNA00294	long intergenic non-protein coding RNA 294	ncRNA
456	chr8	128304304	128314225	+	0	NA	intron (NR_117100, intron 5 of 5)	intron (NR_117100, intron 5 of 5)	52382	NR_117099	103021164	Hs.571531	NR_117099		CASC21	CARLO2|CARLo-2|LINC01244	cancer susceptibility 21 (non-protein coding)	ncRNA
901	chr12	57471066	57473297	+	0	NA	intron (NM_001130963, intron 1 of 8)	intron (NM_001130963, intron 1 of 8)	393	NM_015257	23306	Hs.591040	NM_015257	ENSG00000166881	NEMP1	TMEM194|TMEM194A	nuclear envelope integral membrane protein 1	protein-coding
580	chr6	88298484	88301075	+	0	NA	promoter-TSS (NR_146749)	promoter-TSS (NR_146749)	-6	NM_181837	23595	Hs.410228	NM_012381	ENSG00000135336	ORC3	LAT|LATHEO|ORC3L	origin recognition complex subunit 3	protein-coding
323	chr1	66755869	66770169	+	0	NA	intron (NM_001037341, intron 7 of 16)	intron (NM_001037341, intron 7 of 16)	-34772	NM_001037339	5142	Hs.198072	NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
108	chr11	59381601	59384177	+	0	NA	exon (NM_002556, exon 1 of 14)	exon (NM_002556, exon 1 of 14)	728	NM_002556	5007	Hs.597091	NM_002556	ENSG00000110048	OSBP	OSBP1	oxysterol binding protein	protein-coding
536	chr3	133967593	133972291	+	0	NA	promoter-TSS (NM_002958)	promoter-TSS (NM_002958)	-356	NM_001005861	6259	Hs.654562	NM_002958	ENSG00000163785	RYK	D3S3195|JTK5|JTK5A|RYK1	receptor-like tyrosine kinase	protein-coding
715	chr17	79916861	79919765	+	0	NA	intron (NM_178493, intron 1 of 10)	CpG-11382	744	NM_178493	147111	Hs.106137	NM_178493	ENSG00000185269	NOTUM	hNOTUM	notum, palmitoleoyl-protein carboxylesterase	protein-coding
964	chr3	188065443	188068646	+	0	NA	intron (NM_001167671, intron 2 of 10)	intron (NM_001167671, intron 2 of 10)	123851	NM_001167671	4026	Hs.720220	NM_005578	ENSG00000145012	LPP	-	LIM domain containing preferred translocation partner in lipoma	protein-coding
756	chr7	100886143	100890016	+	0	NA	intron (NM_016068, intron 1 of 4)	CpG	292	NM_016068	51024	Hs.423968	NM_016068	ENSG00000214253	FIS1	CGI-135|TTC11	fission, mitochondrial 1	protein-coding
962	chr6	32934101	32942023	+	0	NA	promoter-TSS (NM_001113182).4	promoter-TSS (NM_001113182).4	-603	NM_001113182	6046	Hs.75243	NM_005104	ENSG00000204256	BRD2	BRD2-IT1|D6S113E|FSH|FSRG1|NAT|O27.1.1|RING3|RNF3	bromodomain containing 2	protein-coding
86	chr12	56613752	56618449	+	0	NA	promoter-TSS (NM_001242826)	promoter-TSS (NM_001242826)	-347	NM_194359	10193	Hs.524502	NM_005785	ENSG00000181852	RNF41	FLRF|NRDP1|SBBI03	ring finger protein 41	protein-coding
435	chr11	62305392	62316091	+	0	NA	intron (NM_024060, intron 1 of 5)	intron (NM_024060, intron 1 of 5)	2418	NM_001346446	79026	Hs.502756	NM_001620	ENSG00000124942	AHNAK	AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
21	chr7	116439502	116445854	+	0	NA	Intergenic	Intergenic	-59885	NM_006136	830	Hs.446123	NM_006136	ENSG00000198898	CAPZA2	CAPPA2|CAPZ	capping actin protein of muscle Z-line subunit alpha 2	protein-coding
147	chr11	47945254	47946843	+	0	NA	Intergenic	Intergenic	-56062	NM_002843	5795	Hs.318547	NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1	protein tyrosine phosphatase, receptor type J	protein-coding
277	chr10	104190688	104193141	+	0	NA	intron (NM_024040, intron 1 of 8)	intron (NM_024040, intron 1 of 8)	509	NM_024040	79004	Hs.500874	NM_024040	ENSG00000107874	CUEDC2	C10orf66|bA18I14.5	CUE domain containing 2	protein-coding
819	chr10	32184621	32188245	+	0	NA	intron (NM_001270697, intron 3 of 18)	L1MCb|LINE|L1	11421	NM_001270699	94134	Hs.499264	NM_018287	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
497	chr3	45172197	45178745	+	0	NA	intron (NM_178181, intron 1 of 3)	MamRep1527|LTR|LTR	12443	NM_178181	64866	Hs.476093	NM_022842	ENSG00000163814	CDCP1	CD318|SIMA135|TRASK	CUB domain containing protein 1	protein-coding
373	chr8	132866832	132871777	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-47031	NM_015137	23167	Hs.204564	NM_015137	ENSG00000132294	EFR3A	-	EFR3 homolog A	protein-coding
622	chr11	65321610	65329565	+	0	NA	5' UTR (NM_001164266, exon 1 of 27)	5' UTR (NM_001164266, exon 1 of 27)	112	NM_021070	4054	Hs.289019	NM_021070	ENSG00000168056	LTBP3	DASS|GPHYSD3|LTBP-3|LTBP2|STHAG6|pp6425	latent transforming growth factor beta binding protein 3	protein-coding
169	chr17	7758379	7762827	+	0	NA	promoter-TSS (NM_144607)	promoter-TSS (NM_144607)	-442	NM_144607	124637	Hs.27475	NM_144607	ENSG00000182224	CYB5D1	-	cytochrome b5 domain containing 1	protein-coding
83	chr2	219574790	219577877	+	0	NA	intron (NM_014640, intron 1 of 19)	L2c|LINE|L2	765	NM_014640	9654	Hs.471405	NM_014640	ENSG00000135912	TTLL4	-	tubulin tyrosine ligase like 4	protein-coding
17	chr14	23774461	23777386	+	0	NA	promoter-TSS (NM_001199839)	promoter-TSS (NM_001199839)	-48	NM_001199864	100529063	Hs.707712	NM_001199864	ENSG00000258643	BCL2L2-PABPN1	-	BCL2L2-PABPN1 readthrough	protein-coding
727	chr19	11545905	11547741	+	0	NA	promoter-TSS (NM_001302454)	promoter-TSS (NM_001302454)	-220	NM_001302453	115948	Hs.124010	NM_145045	ENSG00000198003	CCDC151	CILD30	coiled-coil domain containing 151	protein-coding
837	chr3	172427270	172430895	+	0	NA	promoter-TSS (NM_001146278)	promoter-TSS (NM_001146278)	-74	NM_020792	57552	Hs.444099	NM_020792	ENSG00000144959	NCEH1	AADACL1|NCEH	neutral cholesterol ester hydrolase 1	protein-coding
532	chr19	13946392	13967246	+	0	NA	Intergenic	L2a|LINE|L2	-9346	NR_029495	407010		NR_029495	ENSG00000207980	MIR23A	MIRN23A|hsa-mir-23a|miRNA23A|mir-23a	microRNA 23a	ncRNA
778	chrX	23917178	23921262	+	0	NA	intron (NR_026545, intron 1 of 7)	intron (NR_026545, intron 1 of 7)	6837	NM_024122	79135	Hs.495851	NM_024122	ENSG00000184831	APOO	FAM121B|MIC26|Mic23|My025	apolipoprotein O	protein-coding
219	chr17	37023484	37030302	+	0	NA	intron (NM_006148, intron 1 of 6)	CpG	781	NM_006148	3927	Hs.741156	NM_006148	ENSG00000002834	LASP1	Lasp-1|MLN50	LIM and SH3 protein 1	protein-coding
712	chr11	65624004	65629905	+	0	NA	promoter-TSS (NM_001350283)	promoter-TSS (NM_001350283)	-918	NR_146598	80198	Hs.288798	NM_025128	ENSG00000172732	MUS81	SLX3	MUS81 structure-specific endonuclease subunit	protein-coding
598	chr11	12202538	12206995	+	0	NA	intron (NM_001346295, intron 3 of 26)	intron (NM_001346295, intron 3 of 26)	19536	NR_106739	102466906		NR_106739	ENSG00000275373	MIR6124	hsa-mir-6124	microRNA 6124	ncRNA
123	chr1	227582007	227586592	+	0	NA	Intergenic	AluSz|SINE|Alu	-78473	NM_003607	8476	Hs.35433	NM_003607	ENSG00000143776	CDC42BPA	MRCK|MRCKA|PK428	CDC42 binding protein kinase alpha	protein-coding
968	chr2	8815243	8826583	+	0	NA	intron (NR_110153, intron 1 of 1)	intron (NR_110153, intron 1 of 1)	1078	NR_110153	100506299	Hs.439031	NR_110153	ENSG00000235092	ID2-AS1	-	ID2 antisense RNA 1	ncRNA
774	chr19	17377595	17380222	+	0	NA	intron (NM_014173, intron 1 of 8)	MLT1K|LTR|ERVL-MaLR	723	NM_001288757	29086	Hs.190722	NM_014173	ENSG00000105393	BABAM1	C19orf62|HSPC142|MERIT40|NBA1	BRISC and BRCA1 A complex member 1	protein-coding
609	chr7	6411694	6415916	+	0	NA	promoter-TSS (NM_018890)	promoter-TSS (NM_018890)	-321	NM_018890	5879	Hs.413812	NM_006908	ENSG00000136238	RAC1	MIG5|MRD48|Rac-1|TC-25|p21-Rac1	Rac family small GTPase 1	protein-coding
548	chr11	6702784	6705733	+	0	NA	intron (NM_022061, intron 1 of 2)	intron (NM_022061, intron 1 of 2)	374	NM_022061	63875	Hs.523456	NM_022061	ENSG00000158042	MRPL17	L17mt|LIP2|MRP-L17|MRP-L26|RPL17L|RPML26	mitochondrial ribosomal protein L17	protein-coding
370	chr10	103988872	103992215	+	0	NA	exon (NM_005029, exon 4 of 4)	exon (NM_005029, exon 4 of 4)	4508	NM_152310	83401	Hs.302130	NM_152310	ENSG00000119915	ELOVL3	CIG-30|CIG30	ELOVL fatty acid elongase 3	protein-coding
674	chr1	164713989	164723521	+	0	NA	intron (NM_001353131, intron 2 of 7)	intron (NM_001353131, intron 2 of 7)	25123	NR_038072	100505795	Hs.661039	NR_038072	ENSG00000233693	LOC100505795	-	uncharacterized LOC100505795	ncRNA
224	chr2	220142512	220146190	+	0	NA	intron (NM_001039550, intron 1 of 9)	CpG	311	NM_006736	3300	Hs.77768	NM_006736	ENSG00000135924	DNAJB2	CMT2T|DSMA5|HSJ-1|HSJ1|HSPF3	DnaJ heat shock protein family (Hsp40) member B2	protein-coding
626	chr14	24909367	24913489	+	0	NA	promoter-TSS (NR_110032)	promoter-TSS (NR_110032)	579	NM_020195	56948	Hs.643552	NM_020195	ENSG00000100445	SDR39U1	C14orf124|HCDI	short chain dehydrogenase/reductase family 39U member 1	protein-coding
523	chr5	138087407	138091492	+	0	NA	promoter-TSS (NR_134245)	promoter-TSS (NR_134245)	-62	NM_001323983	1495	Hs.445981	NM_001903	ENSG00000044115	CTNNA1	CAP102|MDPT2	catenin alpha 1	protein-coding
646	chr19	42899679	42903184	+	0	NA	intron (NR_073180, intron 1 of 2)	intron (NR_073180, intron 1 of 2)	131	NR_073180	100996307	Hs.466840	NR_073179	ENSG00000213904	LIPE-AS1	-	LIPE antisense RNA 1	ncRNA
366	chr1	44394049	44401664	+	0	NA	Intergenic	Intergenic	-1136	NM_001136215	9048	Hs.632404	NM_003976	ENSG00000117407	ARTN	ART|ENOVIN|EVN|NBN	artemin	protein-coding
900	chr12	65917485	65920694	+	0	NA	intron (NR_120432, intron 4 of 4)	MIRc|SINE|MIR	32002	NR_135033	105369187	Hs.738044	NR_135033	ENSG00000250748	LOC105369187	-	uncharacterized LOC105369187	ncRNA
374	chr6	26536331	26540220	+	0	NA	promoter-TSS (NM_006353)	promoter-TSS (NM_006353)	-297	NM_006353	10473	Hs.236774	NM_006353	ENSG00000182952	HMGN4	HMG17L3|NHC	high mobility group nucleosomal binding domain 4	protein-coding
39	chr3	49065436	49067944	+	0	NA	TTS (NM_001320581)	TTS (NM_001320581)	185	NM_000884	3615	Hs.654400	NM_000884	ENSG00000178035	IMPDH2	IMPD2|IMPDH-II	inosine monophosphate dehydrogenase 2	protein-coding
327	chr10	75540275	75546136	+	0	NA	3' UTR (NM_203298, exon 3 of 3)	3' UTR (NM_203298, exon 3 of 3)	1397	NM_203298	118487	Hs.181174	NM_203298	ENSG00000172586	CHCHD1	C10orf34|C2360|MRP-S37	coiled-coil-helix-coiled-coil-helix domain containing 1	protein-coding
880	chr5	138627981	138631508	+	0	NA	intron (NM_001194956, intron 1 of 13)	CpG	305	NM_001194956	9782	Hs.268939	NM_018834	ENSG00000015479	MATR3	ALS21|MPD2|VCPDM	matrin 3	protein-coding
139	chr19	10679136	10681987	+	0	NA	promoter-TSS (NM_001800)	promoter-TSS (NM_001800)	-906	NM_079421	1032	Hs.435051	NM_001800	ENSG00000129355	CDKN2D	INK4D|p19|p19-INK4D	cyclin dependent kinase inhibitor 2D	protein-coding
53	chr22	50719392	50724285	+	0	NA	exon (NM_012401, exon 16 of 37)	exon (NM_012401, exon 16 of 37)	-13016	NM_002751	5600	Hs.57732	NM_002751	ENSG00000185386	MAPK11	P38B|P38BETA2|PRKM11|SAPK2|SAPK2B|p38-2|p38Beta	mitogen-activated protein kinase 11	protein-coding
72	chr9	140329498	140331675	+	0	NA	exon (NM_198585, exon 7 of 9)	exon (NM_198585, exon 7 of 9)	5315	NM_198585	377841	Hs.512562	NM_198585	ENSG00000188833	ENTPD8	E-NTPDase|GLSR2492|NTPDase-8|UNQ2492	ectonucleoside triphosphate diphosphohydrolase 8	protein-coding
617	chr7	99154610	99157944	+	0	NA	promoter-TSS (NM_001085368)	promoter-TSS (NM_001085368)	-171	NM_001009958	79027	Hs.599798	NM_024061	ENSG00000197343	ZNF655	VIK|VIK-1	zinc finger protein 655	protein-coding
620	chr2	227699865	227702252	+	0	NA	intron (NM_001349071, intron 1 of 6)	CpG	427	NM_001167608	84236	Hs.471514	NM_032276	ENSG00000144468	RHBDD1	RHBDL4|RRP4	rhomboid domain containing 1	protein-coding
449	chr6	31323860	31325215	+	0	NA	exon (NM_005514, exon 2 of 8).6	exon (NM_005514, exon 2 of 8).6	485	NM_005514	3106	Hs.77961	NM_005514	ENSG00000234745	HLA-B	AS|B-4901|HLAB	major histocompatibility complex, class I, B	protein-coding
426	chr8	130935759	130938269	+	0	NA	intron (NM_001353251, intron 2 of 15)	AluJb|SINE|Alu	15104	NM_001353264	51571	Hs.126941	NM_016623	ENSG00000153310	FAM49B	BM-009|L1	family with sequence similarity 49 member B	protein-coding
116	chr10	94331422	94336404	+	0	NA	promoter-TSS (NM_001322794)	promoter-TSS (NM_001322794)	-61	NM_001322794	3416	Hs.500546	NM_004969	ENSG00000119912	IDE	INSULYSIN	insulin degrading enzyme	protein-coding
182	chr1	10457754	10460574	+	0	NA	promoter-TSS (NM_001304452)	promoter-TSS (NM_001304452)	-11	NM_001304452	5226	Hs.464071	NM_002631	ENSG00000142657	PGD	6PGD	phosphogluconate dehydrogenase	protein-coding
446	chr1	28051310	28054157	+	0	NA	intron (NM_001143912, intron 1 of 9)	CpG	243	NM_001143913	199870	Hs.469359	NM_152660	ENSG00000009780	FAM76A	-	family with sequence similarity 76 member A	protein-coding
100	chr14	77842044	77844445	+	0	NA	promoter-TSS (NM_001010860)	promoter-TSS (NM_001010860)	208	NM_001346133	283578	Hs.26403	NM_213601	ENSG00000100580	TMED8	FAM15B	transmembrane p24 trafficking protein family member 8	protein-coding
267	chr9	128468167	128470418	+	0	NA	5' UTR (NM_024117, exon 1 of 11)	5' UTR (NM_024117, exon 1 of 11)	221	NM_001006619	79109	Hs.495138	NM_024117	ENSG00000119487	MAPKAP1	JC310|MIP1|SIN1|SIN1b|SIN1g	mitogen-activated protein kinase associated protein 1	protein-coding
358	chr12	76171002	76178037	+	0	NA	Intergenic	Intergenic	251037	NM_007350	22822	Hs.602085	NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
936	chr17	39103414	39117159	+	0	NA	Intergenic	Intergenic	12858	NM_213656	390792	Hs.28467	NM_213656	ENSG00000196859	KRT39	CK-39|K39|KA35	keratin 39	protein-coding
207	chr12	76212283	76221641	+	0	NA	Intergenic	Intergenic	208594	NM_007350	22822	Hs.602085	NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
578	chr12	76241983	76245722	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	181704	NM_007350	22822	Hs.602085	NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
561	chr6	170860593	170864794	+	0	NA	promoter-TSS (NM_003194)	promoter-TSS (NM_003194)	-276	NM_002793	5689	Hs.352768	NM_002793	ENSG00000008018	PSMB1	HC5|PMSB1|PSC5	proteasome subunit beta 1	protein-coding
726	chr15	85955321	85958843	+	0	NA	intron (NM_007200, intron 1 of 36)	intron (NM_007200, intron 1 of 36)	33235	NM_007200	11214	Hs.459211	NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
495	chr4	98411051	98422112	+	0	NA	Intergenic	Intergenic	128504	NR_102713	101410545	Hs.628520	NR_102713	ENSG00000251620	STPG2-AS1	-	STPG2 antisense RNA 1	ncRNA
371	chr12	120727708	120732169	+	0	NA	Intergenic	Intergenic	-10186	NM_012240	23409	Hs.50861	NM_012240	ENSG00000089163	SIRT4	SIR2L4	sirtuin 4	protein-coding
289	chr14	77646808	77649907	+	0	NA	intron (NM_020431, intron 1 of 23)	intron (NM_020431, intron 1 of 23)	255	NM_020431	57156	Hs.22452	NM_020431	ENSG00000165548	TMEM63C	C14orf171|CSC1|hsCSC1	transmembrane protein 63C	protein-coding
81	chr7	35838753	35843071	+	0	NA	promoter-TSS (NR_120511)	promoter-TSS (NR_120511)	316	NM_001011553	989	Hs.191346	NM_001788	ENSG00000122545	SEPT7	CDC10|CDC3|NBLA02942|SEPT7A	septin 7	protein-coding
850	chr1	197169216	197172247	+	0	NA	intron (NM_001257965, intron 1 of 14)	intron (NM_001257965, intron 1 of 14)	139	NM_001257965	23418	Hs.126135	NM_012076	ENSG00000134376	CRB1	LCA8|RP12	crumbs 1, cell polarity complex component	protein-coding
206	chr8	144812321	144824502	+	0	NA	intron (NR_033849, intron 2 of 3)	AluSq2|SINE|Alu	2101	NR_033849	100128338	Hs.493171	NR_033849	ENSG00000203499	FAM83H-AS1	onco-lncRNA-3	FAM83H antisense RNA 1 (head to head)	ncRNA
186	chr16	68876901	68879108	+	0	NA	intron (NM_024562, intron 1 of 17)	intron (NM_024562, intron 1 of 17)	495	NM_024562	79613	Hs.13526	NM_024562	ENSG00000103047	TANGO6	TMCO7	transport and golgi organization 6 homolog	protein-coding
709	chr3	49129313	49133033	+	0	NA	promoter-TSS (NM_001320581)	promoter-TSS (NM_001320581)	-108	NM_001320583	54870	Hs.297389	NM_017730	ENSG00000198218	QRICH1	-	glutamine rich 1	protein-coding
273	chr1	93809700	93814039	+	0	NA	promoter-TSS (NR_034089)	promoter-TSS (NR_034089)	391	NM_001938	1810	Hs.348418	NM_001938	ENSG00000117505	DR1	NC2|NC2-BETA|NC2B|NCB2	down-regulator of transcription 1	protein-coding
768	chr8	126663545	126680887	+	0	NA	Intergenic	Intergenic	227765	NM_001282985	10221	Hs.444947	NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
785	chr9	37798859	37803216	+	0	NA	exon (NM_024345, exon 1 of 7)	exon (NM_024345, exon 1 of 7)	254	NM_024345	79269	Hs.118394	NM_024345	ENSG00000122741	DCAF10	WDR32	DDB1 and CUL4 associated factor 10	protein-coding
807	chr11	34673540	34677663	+	0	NA	intron (NM_001206616, intron 6 of 8)	intron (NM_001206616, intron 6 of 8)	21590	NM_001206616	26298	Hs.653859	NM_012153	ENSG00000135373	EHF	ESE3|ESE3B|ESEJ	ETS homologous factor	protein-coding
384	chr10	92614313	92622223	+	0	NA	promoter-TSS (NM_019859)	promoter-TSS (NM_019859)	-597	NM_019860	3363	Hs.73739	NM_000872	ENSG00000148680	HTR7	5-HT7	5-hydroxytryptamine receptor 7	protein-coding
826	chr1	1237448	1246372	+	0	NA	intron (NM_030649, intron 1 of 23)	intron (NM_030649, intron 1 of 23)	1359	NM_030649	116983	Hs.535257	NM_030649	ENSG00000131584	ACAP3	CENTB5	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	protein-coding
843	chr7	116337816	116349017	+	0	NA	intron (NM_000245, intron 2 of 20)	Kanga2_a|DNA|TcMar-Tc2	30972	NM_000245	4233	Hs.132966	NM_000245	ENSG00000105976	MET	AUTS9|DFNB97|HGFR|RCCP2|c-Met	MET proto-oncogene, receptor tyrosine kinase	protein-coding
80	chrX	46174543	46194781	+	0	NA	TTS (NR_110388)	TTS (NR_110388)	2447	NR_110388	101927574	Hs.350952	NR_110388	ENSG00000236751	LINC01186	-	long intergenic non-protein coding RNA 1186	ncRNA
824	chr5	92761467	92763412	+	0	NA	intron (NR_109822, intron 2 of 2)	intron (NR_109822, intron 2 of 2)	144610	NR_109825	441094	Hs.457407	NR_015369	ENSG00000237187	NR2F1-AS1	-	NR2F1 antisense RNA 1	ncRNA
588	chr3	46203932	46207162	+	0	NA	Intergenic	L1PA12|LINE|L1	44285	NM_001295	1230	Hs.301921	NM_001295	ENSG00000163823	CCR1	CD191|CKR-1|CKR1|CMKBR1|HM145|MIP1aR|SCYAR1	C-C motif chemokine receptor 1	protein-coding
420	chr1	245252804	245257398	+	0	NA	intron (NR_026587, intron 5 of 5)	intron (NR_026587, intron 5 of 5)	-63186	NM_018012	55083	Hs.143134	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
304	chr1	40023850	40025910	+	0	NA	intron (NR_003929, intron 1 of 8)	intron (NR_003929, intron 1 of 8)	490	NR_144357	728448	Hs.472508	NR_003929	ENSG00000243970	PPIEL	PPIEP1	peptidylprolyl isomerase E like pseudogene	pseudo
164	chr16	31127296	31130229	+	0	NA	promoter-TSS (NM_032188)	promoter-TSS (NM_032188)	-223	NM_032188	84148	Hs.533803	NM_032188	ENSG00000103510	KAT8	MOF|MYST1|ZC2HC8|hMOF	lysine acetyltransferase 8	protein-coding
614	chr12	54717273	54724078	+	0	NA	intron (NM_001271734, intron 1 of 7)	intron (NM_001271734, intron 1 of 7)	1801	NM_001271736	22818	Hs.505652	NM_016057	ENSG00000111481	COPZ1	CGI-120|COPZ|HSPC181|zeta-COP|zeta1-COP	coatomer protein complex subunit zeta 1	protein-coding
68	chr1	154297108	154300601	+	0	NA	intron (NM_001005855, intron 1 of 11)	intron (NM_001005855, intron 1 of 11)	818	NM_001005855	57198	Hs.435700	NM_020452	ENSG00000143515	ATP8B2	ATPID	ATPase phospholipid transporting 8B2	protein-coding
874	chr16	75496660	75499180	+	0	NA	intron (NM_001304998, intron 1 of 2)	CpG	394	NM_001304997	124491	Hs.487510	NM_145254	ENSG00000166822	TMEM170A	TMEM170	transmembrane protein 170A	protein-coding
355	chr8	144798045	144800291	+	0	NA	intron (NM_139021, intron 1 of 13)	L2c|LINE|L2	661	NM_139021	225689	Hs.493169	NM_139021	ENSG00000181085	MAPK15	ERK7|ERK8	mitogen-activated protein kinase 15	protein-coding
550	chr7	92460551	92466323	+	0	NA	promoter-TSS (NM_001259)	promoter-TSS (NM_001259)	-173	NM_001259	1021	Hs.119882	NM_001259	ENSG00000105810	CDK6	MCPH12|PLSTIRE	cyclin dependent kinase 6	protein-coding
243	chr17	73688553	73698165	+	0	NA	intron (NM_001301855, intron 5 of 11)	intron (NM_001301855, intron 5 of 11)	-24049	NM_000213	3691	Hs.632226	NM_000213	ENSG00000132470	ITGB4	CD104|GP150	integrin subunit beta 4	protein-coding
967	chr17	76034927	76038840	+	0	NA	intron (NM_018996, intron 3 of 20)	intron (NM_018996, intron 3 of 20)	36565	NM_018996	57690	Hs.406810	NM_018996	ENSG00000078687	TNRC6C	-	trinucleotide repeat containing 6C	protein-coding
225	chr12	76143331	76166447	+	0	NA	Intergenic	Intergenic	-249471	NM_007043	11103	Hs.645517	NM_007043	ENSG00000111615	KRR1	HRB2|RIP-1	KRR1, small subunit processome component homolog	protein-coding
703	chr20	48552256	48553935	+	0	NA	intron (NM_018683, intron 1 of 5)	CpG	181	NM_018683	55905	Hs.144949	NM_018683	ENSG00000124226	RNF114	PSORS12|ZNF313	ring finger protein 114	protein-coding
619	chr13	41362202	41365729	+	0	NA	intron (NM_014252, intron 1 of 6)	CpG	418	NM_014252	10166	Hs.646645	NM_014252	ENSG00000102743	SLC25A15	D13S327|HHH|ORC1|ORNT1	solute carrier family 25 member 15	protein-coding
475	chr1	8932680	8941394	+	0	NA	intron (NM_001353346, intron 1 of 11)	AluSx|SINE|Alu	1708	NM_001201483	2023	Hs.517145	NM_001428	ENSG00000074800	ENO1	ENO1L1|HEL-S-17|MPB1|NNE|PPH	enolase 1	protein-coding
585	chr17	40818361	40821050	+	0	NA	TTS (NM_016437)	TTS (NM_016437)	8403	NR_073574	79990	Hs.632251	NM_024927	ENSG00000068137	PLEKHH3	-	pleckstrin homology, MyTH4 and FERM domain containing H3	protein-coding
114	chr11	62275039	62277340	+	0	NA	intron (NM_024060, intron 4 of 5)	intron (NM_024060, intron 4 of 5)	36970	NM_001346446	79026	Hs.502756	NM_001620	ENSG00000124942	AHNAK	AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
339	chr14	24767496	24770511	+	0	NA	promoter-TSS (NM_001286367)	promoter-TSS (NM_001286367)	36	NM_001136050	115817	Hs.348350	NM_138452	ENSG00000157379	DHRS1	SDR19C1	dehydrogenase/reductase 1	protein-coding
487	chr5	55653607	55656742	+	0	NA	Intergenic	Intergenic	122422	NR_104664	102467147	Hs.650177	NR_104664	ENSG00000248727	LINC01948	-	long intergenic non-protein coding RNA 1948	ncRNA
409	chr7	100964114	100966523	+	0	NA	promoter-TSS (NM_001130821)	promoter-TSS (NM_001130821)	-214	NM_001130822	64792	Hs.389104	NM_022777	ENSG00000128581	IFT22	RABL5	intraflagellar transport 22	protein-coding
369	chr15	85196213	85199644	+	0	NA	promoter-TSS (NR_130945)	promoter-TSS (NR_130945)	-354	NR_130947	84942	Hs.745027	NM_032856	ENSG00000177082	WDR73	GAMOS|GAMOS1|HSPC264	WD repeat domain 73	protein-coding
629	chr13	111624691	111626864	+	0	NA	intron (NR_126378, intron 1 of 1)	HAL1b|LINE|L1	7403	NR_126378	104355135	Hs.649708	NR_126378		LINC00431	-	long intergenic non-protein coding RNA 431	ncRNA
161	chr9	139976047	139983875	+	0	NA	TTS (NM_207309)	TTS (NM_207309)	1308	NR_027447	100289341	Hs.593896	NR_027447	ENSG00000268996	MAN1B1-DT	MAN1B1-AS1	MAN1B1 divergent transcript	ncRNA
253	chr12	80082328	80087804	+	0	NA	promoter-TSS (NM_002583)	promoter-TSS (NM_002583)	-189	NM_001354733	5074	Hs.643130	NM_002583	ENSG00000177425	PAWR	PAR4|Par-4	pro-apoptotic WT1 regulator	protein-coding
856	chr6	56572744	56584112	+	0	NA	intron (NM_183380, intron 2 of 93)	intron (NM_183380, intron 2 of 93)	-70734	NM_015548	667	Hs.604915	NM_001723	ENSG00000151914	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2	dystonin	protein-coding
367	chr16	2570046	2572006	+	0	NA	TTS (NM_001694)	TTS (NM_001694)	663	NM_001145815	51005	Hs.740430	NM_015944	ENSG00000162066	AMDHD2	CGI-14	amidohydrolase domain containing 2	protein-coding
922	chr14	77497861	77501684	+	0	NA	Intergenic	CpG	-4730	NM_024496	64207	Hs.179260	NM_024496	ENSG00000119669	IRF2BPL	C14orf4|EAP1	interferon regulatory factor 2 binding protein like	protein-coding
508	chr6	43019679	43023047	+	0	NA	TTS (NM_001300848)	TTS (NM_001300848)	320	NM_001168370	9820	Hs.520136	NM_014780	ENSG00000044090	CUL7	3M1|CUL-7|KIAA0076|dJ20C7.5	cullin 7	protein-coding
823	chr18	68096418	68100297	+	0	NA	Intergenic	Intergenic	-46530	NR_110764	101060542	Hs.586967	NR_110764	ENSG00000266278	LINC01910	-	long intergenic non-protein coding RNA 1910	ncRNA
682	chr19	6391567	6395319	+	0	NA	promoter-TSS (NR_106848)	promoter-TSS (NR_106848)	-152	NM_002096	2962	Hs.68257	NM_002096	ENSG00000125651	GTF2F1	BTF4|RAP74|TF2F1|TFIIF	general transcription factor IIF subunit 1	protein-coding
868	chr3	149320344	149323775	+	0	NA	intron (NM_001348362, intron 5 of 9)	intron (NM_001348362, intron 5 of 9)	53753	NM_001168280	25937	Hs.477921	NM_015472	ENSG00000018408	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding
808	chr12	56650082	56653373	+	0	NA	intron (NM_173595, intron 1 of 27)	CpG	416	NM_173595	283373	Hs.524506	NM_173595	ENSG00000139645	ANKRD52	ANKRD33	ankyrin repeat domain 52	protein-coding
638	chr6	30639563	30641445	+	0	NA	exon (NM_003587, exon 1 of 20).7	exon (NM_003587, exon 1 of 20).7	326	NM_001164239	8449	Hs.485060	NM_003587	ENSG00000204560	DHX16	DBP2|DDX16|PRO2014|PRP8|PRPF2|Prp2	DEAH-box helicase 16	protein-coding
401	chr1	150531218	150537667	+	0	NA	intron (NR_104133, intron 3 of 3)	intron (NR_104133, intron 3 of 3)	10037	NR_036211	100422997		NR_036211	ENSG00000264553	MIR4257	-	microRNA 4257	ncRNA
801	chr15	93462859	93466593	+	0	NA	intron (NM_001042572, intron 2 of 12)	intron (NM_001042572, intron 2 of 12)	17097	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
863	chr15	52469902	52473187	+	0	NA	promoter-TSS (NR_102751)	promoter-TSS (NR_102751)	618	NM_006578	10681	Hs.155090	NM_006578	ENSG00000069966	GNB5	GB5|IDDCA|LADCI	G protein subunit beta 5	protein-coding
569	chr8	127568396	127571827	+	0	NA	intron (NM_174911, intron 1 of 1)	CpG	600	NM_174911	157638	Hs.741352	NM_174911	ENSG00000168672	FAM84B	BCMP101|NSE2	family with sequence similarity 84 member B	protein-coding
603	chr5	177556734	177559645	+	0	NA	intron (NM_022762, intron 1 of 10)	CpG	227	NM_001288794	64777	Hs.27222	NM_022762	ENSG00000145916	RMND5B	GID2|GID2B	required for meiotic nuclear division 5 homolog B	protein-coding
177	chr2	62931088	62935857	+	0	NA	promoter-TSS (NM_001354217)	promoter-TSS (NM_001354217)	24	NM_001354216	23301	Hs.271667	NM_015252	ENSG00000115504	EHBP1	HPC12|NACSIN	EH domain binding protein 1	protein-coding
459	chr4	125631852	125636768	+	0	NA	promoter-TSS (NM_001167882)	promoter-TSS (NM_001167882)	-423	NM_001167882	57182	Hs.480694	NM_020337	ENSG00000151458	ANKRD50	-	ankyrin repeat domain 50	protein-coding
466	chr1	44394049	44401664	+	0	NA	Intergenic	Intergenic	-1136	NM_001136215	9048	Hs.632404	NM_003976	ENSG00000117407	ARTN	ART|ENOVIN|EVN|NBN	artemin	protein-coding
815	chr2	224440772	224443103	+	0	NA	Intergenic	BLACKJACK|DNA|hAT-Blackjack	25280	NM_003469	7857	Hs.516726	NM_003469	ENSG00000171951	SCG2	CHGC|EM66|SN|SgII	secretogranin II	protein-coding
61	chr6	27515391	27517837	+	0	NA	Intergenic	AluY|SINE|Alu	-75717	NM_001318893	7738	Hs.158174	NM_007149	ENSG00000096654	ZNF184	kr-ZNF3	zinc finger protein 184	protein-coding
65	chr15	67545539	67547725	+	0	NA	promoter-TSS (NM_001284347)	promoter-TSS (NM_001284347)	442	NM_001271886	79719	Hs.254642	NM_024666	ENSG00000103591	AAGAB	KPPP1|PPKP1|PPKP1A|p34	alpha and gamma adaptin binding protein	protein-coding
711	chr7	92460551	92466323	+	0	NA	promoter-TSS (NM_001259)	promoter-TSS (NM_001259)	-173	NM_001259	1021	Hs.119882	NM_001259	ENSG00000105810	CDK6	MCPH12|PLSTIRE	cyclin dependent kinase 6	protein-coding
666	chr1	66900690	66903534	+	0	NA	Intergenic	Intergenic	82051	NM_001297442	5142	Hs.198072	NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
42	chr19	2149493	2152317	+	0	NA	intron (NM_001261826, intron 1 of 31)	intron (NM_001261826, intron 1 of 31)	720	NM_003938	8943	Hs.512815	NM_003938	ENSG00000065000	AP3D1	ADTD|HPS10|hBLVR	adaptor related protein complex 3 subunit delta 1	protein-coding
436	chr13	52584941	52586988	+	0	NA	promoter-TSS (NM_001330578)	promoter-TSS (NM_001330578)	-334	NM_000053	540	Hs.492280	NM_000053	ENSG00000123191	ATP7B	PWD|WC1|WD|WND	ATPase copper transporting beta	protein-coding
664	chr11	47234856	47239131	+	0	NA	intron (NM_000107, intron 1 of 9)	intron (NM_000107, intron 1 of 9)	500	NM_001300734	1643	Hs.700338	NM_000107	ENSG00000134574	DDB2	DDBB|UV-DDB2|XPE	damage specific DNA binding protein 2	protein-coding
998	chr6	130163222	130168654	+	0	NA	intron (NM_001010876, intron 2 of 4)	intron (NM_001010876, intron 2 of 4)	16478	NM_001010876	253582	Hs.448372	NM_001010876	ENSG00000203756	TMEM244	C6orf191|bA174C7.4	transmembrane protein 244	protein-coding
954	chr11	67230402	67237184	+	0	NA	intron (NR_073412, intron 4 of 6)	AluSx|SINE|Alu	2955	NR_073413	80194	Hs.288761	NM_025124	ENSG00000172663	TMEM134	-	transmembrane protein 134	protein-coding
283	chr5	89225459	89228329	+	0	NA	Intergenic	Intergenic	85643	NR_037433	100500825		NR_037433	ENSG00000264342	MIR3660	mir-3660	microRNA 3660	ncRNA
752	chr6	7588621	7592482	+	0	NA	exon (NM_152551, exon 1 of 9)	exon (NM_152551, exon 1 of 9)	119	NM_152551	154007	Hs.13366	NM_152551	ENSG00000168566	SNRNP48	C6orf151|dJ336K20B.1|dJ512B11.2	small nuclear ribonucleoprotein U11/U12 subunit 48	protein-coding
925	chr12	56544407	56547858	+	0	NA	promoter-TSS (NM_001199629)	promoter-TSS (NM_001199629)	-72	NM_001199629	140465	Hs.632731	NM_002475	ENSG00000196465	MYL6B	MLC1SA	myosin light chain 6B	protein-coding
288	chr10	114827908	114835491	+	0	NA	intron (NM_001198528, intron 4 of 14)	intron (NM_001198528, intron 4 of 14)	26585	NR_132769	106635520		NR_132769		SNORA87	-	small nucleolar RNA, H/ACA box 87	snoRNA
592	chr16	2095676	2098926	+	0	NA	promoter-TSS (NM_001318827)	promoter-TSS (NM_001318827)	569	NM_001318194	4913	Hs.66196	NM_002528	ENSG00000065057	NTHL1	FAP3|NTH1|OCTS3|hNTH1	nth like DNA glycosylase 1	protein-coding
173	chr17	65414310	65421740	+	0	NA	intron (NM_012417, intron 1 of 8)	intron (NM_012417, intron 1 of 8)	44628	NM_181671	26207	Hs.591185	NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein cytoplasmic 1	protein-coding
247	chrX	45599324	45643911	+	0	NA	Intergenic	Intergenic	-15087	NR_029636	407007		NR_029636	ENSG00000207725	MIR222	MIRN222|miRNA222|mir-222	microRNA 222	ncRNA
465	chr17	25877169	25881490	+	0	NA	intron (NM_014238, intron 3 of 20)	L2a|LINE|L2	-78845	NM_001330163	3965	Hs.81337	NM_002308	ENSG00000168961	LGALS9	HUAT|LGALS9A	galectin 9	protein-coding
529	chr17	72744173	72748157	+	0	NA	intron (NM_004252, intron 1 of 5)	intron (NM_004252, intron 1 of 5)	1413	NR_037409	100500847		NR_037409	ENSG00000284186	MIR3615	mir-3615	microRNA 3615	ncRNA
142	chr12	46775420	46781970	+	0	NA	intron (NR_125381, intron 1 of 2)	MIR|SINE|MIR	805	NR_125381	100288798	Hs.525922	NR_125377		LOC100288798	-	uncharacterized LOC100288798	ncRNA
987	chr1	153948716	153951288	+	0	NA	5' UTR (NM_006694, exon 1 of 5)	5' UTR (NM_006694, exon 1 of 5)	449	NM_006694	10899	Hs.6396	NM_006694	ENSG00000143543	JTB	HJTB|HSPC222|PAR|hJT	jumping translocation breakpoint	protein-coding
191	chr5	115174415	115197015	+	0	NA	intron (NM_001318090, intron 1 of 3)	intron (NM_001318090, intron 1 of 3)	-8167	NR_073603	9140	Hs.264482	NM_004707	ENSG00000145782	ATG12	APG12|APG12L|FBR93|HAPG12	autophagy related 12	protein-coding
810	chr2	235165576	235169079	+	0	NA	Intergenic	Intergenic	195912	NR_146988	105373934	Hs.471685	NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
133	chr17	76877787	76882794	+	0	NA	intron (NM_003255, intron 1 of 4)	intron (NM_003255, intron 1 of 4)	19009	NM_001243541	100653515	Hs.734636	NM_001243540	ENSG00000178404	CEP295NL	DDC8|KIAA1731NL	CEP295 N-terminal like	protein-coding
48	chr5	132297147	132300586	+	0	NA	intron (NM_014423, intron 1 of 20)	CpG	488	NM_014423	27125	Hs.519313	NM_014423	ENSG00000072364	AFF4	AF5Q31|CHOPS|MCEF	AF4/FMR2 family member 4	protein-coding
361	chr8	22842781	22846069	+	0	NA	promoter-TSS (NM_001160036)	promoter-TSS (NM_001160036)	-505	NM_001160036	23221	Hs.372688	NM_015178	ENSG00000008853	RHOBTB2	DBC2	Rho related BTB domain containing 2	protein-coding
28	chr21	44297492	44301237	+	0	NA	promoter-TSS (NM_001260477)	promoter-TSS (NM_001260477)	21	NM_001260477	10785	Hs.248815	NM_018669	ENSG00000160193	WDR4	TRM82|TRMT82	WD repeat domain 4	protein-coding
563	chr9	111859138	111862235	+	0	NA	intron (NM_032012, intron 3 of 17)	intron (NM_032012, intron 3 of 17)	21539	NM_032012	23731	Hs.308074	NM_032012	ENSG00000106771	TMEM245	C9orf5|CG-2|CG2	transmembrane protein 245	protein-coding
959	chr22	50764382	50766894	+	0	NA	promoter-TSS (NM_001001794)	promoter-TSS (NM_001001794)	-149	NM_001001794	414918	Hs.530380	NM_001001794	ENSG00000205593	DENND6B	AFI1B|FAM116B	DENN domain containing 6B	protein-coding
742	chr19	47633137	47635457	+	0	NA	non-coding (NR_027280, exon 1 of 9)	non-coding (NR_027280, exon 1 of 9)	182	NR_027280	10055	Hs.515500	NM_005500	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
306	chr1	52829635	52833500	+	0	NA	intron (NM_032449, intron 1 of 23)	CpG	310	NM_001330585	200014	Hs.591451	NM_032449	ENSG00000154222	CC2D1B	-	coiled-coil and C2 domain containing 1B	protein-coding
417	chr7	23143889	23146598	+	0	NA	promoter-TSS (NM_001172428)	promoter-TSS (NM_001172428)	79	NR_046220	100775104		NR_046220	ENSG00000230658	KLHL7-DT	KLHL7-AS1|PLATAK	KLHL7 divergent transcript	ncRNA
385	chrX	47090439	47094762	+	0	NA	exon (NM_004651, exon 1 of 21)	exon (NM_004651, exon 1 of 21)	286	NM_004651	8237	Hs.171501	NM_004651	ENSG00000102226	USP11	UHX1	ubiquitin specific peptidase 11	protein-coding
55	chr10	70881925	70885929	+	0	NA	promoter-TSS (NM_001318944)	promoter-TSS (NM_001318944)	18	NM_001035260	9559	Hs.499925	NM_004896	ENSG00000122958	VPS26A	HB58|Hbeta58|PEP8A|VPS26	VPS26, retromer complex component A	protein-coding
884	chr15	40696692	40699301	+	0	NA	promoter-TSS (NR_148925)	promoter-TSS (NR_148925)	-2	NM_001354597	3712	Hs.513646	NM_002225	ENSG00000128928	IVD	ACAD2	isovaleryl-CoA dehydrogenase	protein-coding
990	chr16	19727296	19731232	+	0	NA	non-coding (NR_130967, exon 2 of 8)	non-coding (NR_130967, exon 2 of 8)	228	NM_001348533	400506	Hs.585209	NM_001012991	ENSG00000103550	KNOP1	101F10.1|C16orf88|FAM191A|TSG118	lysine rich nucleolar protein 1	protein-coding
109	chr5	141851028	141853247	+	0	NA	Intergenic	Intergenic	147279	NR_120664	101926941	Hs.658945	NR_120664	ENSG00000231185	SPRY4-AS1	THCAT68	SPRY4 antisense RNA 1	ncRNA
280	chr10	102287813	102290759	+	0	NA	intron (NM_001284368, intron 1 of 4)	CpG	394	NM_001284367	4714	Hs.523215	NM_005004	ENSG00000166136	NDUFB8	ASHI|CI-ASHI	NADH:ubiquinone oxidoreductase subunit B8	protein-coding
552	chr15	41784280	41786933	+	0	NA	promoter-TSS (NM_002220)	promoter-TSS (NM_002220)	-450	NM_002220	3706	Hs.2722	NM_002220	ENSG00000137825	ITPKA	IP3-3KA|IP3KA	inositol-trisphosphate 3-kinase A	protein-coding
741	chr14	54633827	54638450	+	0	NA	Intergenic	Intergenic	-212529	NM_130850	652	Hs.68879	NM_001202	ENSG00000125378	BMP4	BMP2B|BMP2B1|MCOPS6|OFC11|ZYME	bone morphogenetic protein 4	protein-coding
718	chr7	65668964	65671798	+	0	NA	5' UTR (NM_003596, exon 1 of 6)	5' UTR (NM_003596, exon 1 of 6)	122	NM_003596	8460	Hs.421194	NM_003596	ENSG00000169902	TPST1	TANGO13A	tyrosylprotein sulfotransferase 1	protein-coding
444	chr6	31788383	31796359	+	0	NA	Intergenic	Intergenic	-3141	NM_005346	3304	Hs.274402	NM_005346	ENSG00000204388	HSPA1B	HSP70-1B|HSP70-2|HSP70.2	heat shock protein family A (Hsp70) member 1B	protein-coding
230	chr14	68711862	68725028	+	0	NA	intron (NM_002877, intron 7 of 10)	intron (NM_002877, intron 7 of 10)	377059	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
328	chr1	1445544	1448161	+	0	NA	promoter-TSS (NM_018188)	promoter-TSS (NM_018188)	-671	NM_001170535	55210	Hs.23413	NM_018188	ENSG00000197785	ATAD3A	HAYOS	ATPase family, AAA domain containing 3A	protein-coding
961	chr7	131010367	131015094	+	0	NA	promoter-TSS (NR_125364)	promoter-TSS (NR_125364)	135	NM_013255	4289	Hs.44693	NM_013255	ENSG00000128585	MKLN1	TWA2	muskelin 1	protein-coding
595	chr1	210500561	210503823	+	0	NA	promoter-TSS (NM_001170587)	promoter-TSS (NM_001170587)	-58	NM_001170587	55733	Hs.58650	NM_018194	ENSG00000054392	HHAT	MART2|SKI1|Skn	hedgehog acyltransferase	protein-coding
654	chr19	48110474	48113913	+	0	NA	intron (NM_015711, intron 1 of 14)	CpG	740	NM_015711	29998	Hs.97244	NM_015711	ENSG00000063169	BICRA	GLTSCR1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding
745	chr10	74078247	74094575	+	0	NA	Intergenic	LTR12C|LTR|ERV1	28496	NM_001002762	54788	Hs.500013	NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
381	chr1	33684226	33687950	+	0	NA	Intergenic	MIRb|SINE|MIR	-36086	NM_152493	149076	Hs.743358	NM_152493	ENSG00000160094	ZNF362	RN|lin-29	zinc finger protein 362	protein-coding
853	chr1	23879727	23889598	+	0	NA	3' UTR (NM_002167, exon 3 of 3)	3' UTR (NM_002167, exon 3 of 3)	1623	NM_002167	3399	Hs.76884	NM_002167	ENSG00000117318	ID3	HEIR-1|bHLHb25	inhibitor of DNA binding 3, HLH protein	protein-coding
909	chr1	28830707	28839769	+	0	NA	TTS (NR_004404)	TTS (NR_004404)	168	NR_004404	26768		NR_004404	ENSG00000200087	SNORA73B	105A|E1c|RNU105A|RNU17B|U17B	small nucleolar RNA, H/ACA box 73B	snoRNA
140	chr10	74078247	74094575	+	0	NA	Intergenic	LTR12C|LTR|ERV1	28496	NM_001002762	54788	Hs.500013	NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
44	chr10	3823589	3830285	+	0	NA	intron (NR_027653, intron 1 of 3)	CpG	536	NR_027653	1316	Hs.4055	NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	Kruppel like factor 6	protein-coding
399	chr17	8121717	8128413	+	0	NA	intron (NR_026951, intron 2 of 2)	CpG	2296	NR_026951	284029	Hs.121692	NM_173621	ENSG00000178977	LINC00324	C17orf44|NCRNA00324	long intergenic non-protein coding RNA 324	ncRNA
685	chr5	176942841	176945711	+	0	NA	promoter-TSS (NM_001321830)	promoter-TSS (NM_001321830)	51	NM_016222	51428	Hs.484288	NM_016222	ENSG00000183258	DDX41	ABS|MPLPF	DEAD-box helicase 41	protein-coding
58	chr1	43470631	43476488	+	0	NA	Intergenic	Intergenic	-48712	NM_006516	6513	Hs.473721	NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
958	chr19	47790996	47794946	+	0	NA	Intergenic	MER66B|LTR|ERV1	14829	NM_178511	255783	Hs.128690	NM_178511	ENSG00000257704	INAFM1	PRR24	InaF motif containing 1	protein-coding
260	chr12	57027183	57031393	+	0	NA	intron (NM_001351156, intron 1 of 30)	intron (NM_001351156, intron 1 of 30)	875	NM_001351156	11176	Hs.314263	NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
838	chr6	27123975	27126349	+	0	NA	Intergenic	Intergenic	9757	NR_036096	100422934		NR_036096	ENSG00000265565	MIR3143	mir-3143	microRNA 3143	ncRNA
750	chr5	5420061	5423970	+	0	NA	promoter-TSS (NM_015325)	promoter-TSS (NM_015325)	-771	NM_015325	23379	Hs.449296	NM_015325	ENSG00000164151	ICE1	KIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding
499	chr2	201199588	201203607	+	0	NA	intron (NM_001282743, intron 2 of 11)	intron (NM_001282743, intron 2 of 11)	27924	NM_001282744	26010	Hs.120323	NM_015535	ENSG00000196141	SPATS2L	DNAPTP6|SGNP	spermatogenesis associated serine rich 2 like	protein-coding
112	chr1	28842689	28846610	+	0	NA	promoter-TSS (NM_001048195)	promoter-TSS (NM_001048195)	-96	NM_001269	1104	Hs.469723	NM_001269	ENSG00000180198	RCC1	CHC1|RCC1-I|SNHG3-RCC1	regulator of chromosome condensation 1	protein-coding
15	chr16	12007703	12011680	+	0	NA	5' UTR (NM_001130006, exon 1 of 15)	5' UTR (NM_001130006, exon 1 of 15)	134	NM_001130006	2935	Hs.528780	NM_002094	ENSG00000103342	GSPT1	551G9.2|ETF3A|GST1|eRF3a	G1 to S phase transition 1	protein-coding
309	chr6	133951521	133955151	+	0	NA	intron (NR_109982, intron 4 of 8)	L2c|LINE|L2	-188949	NR_027030	154089	Hs.126165	NR_027030		LINC01312	-	long intergenic non-protein coding RNA 1312	ncRNA
841	chr10	114257308	114261653	+	0	NA	intron (NM_145206, intron 3 of 7)	L2c|LINE|L2	-52176	NM_001351082	64429	Hs.196990	NM_022494	ENSG00000023041	ZDHHC6	DHHC-6|ZNF376	zinc finger DHHC-type containing 6	protein-coding
237	chr1	7607334	7614531	+	0	NA	intron (NM_001349608, intron 5 of 21)	intron (NM_001349608, intron 5 of 21)	-118858	NM_001349623	23261	Hs.397705	NM_015215	ENSG00000171735	CAMTA1	CANPMR	calmodulin binding transcription activator 1	protein-coding
6	chr11	9158601	9162449	+	0	NA	non-coding (NR_145966, exon 23 of 23)	non-coding (NR_145966, exon 23 of 23)	44615	NR_027713	283102	Hs.689472	NR_027713	ENSG00000213538	KRT8P41	-	keratin 8 pseudogene 41	pseudo
377	chr16	1469550	1472116	+	0	NA	promoter-TSS (NM_001272051)	promoter-TSS (NM_001272051)	-32	NM_001272051	283951	Hs.58373	NM_001010878	ENSG00000174109	C16orf91	CCSMST1|URLC5|gs103	chromosome 16 open reading frame 91	protein-coding
747	chr10	80939915	80945346	+	0	NA	intron (NM_020338, intron 4 of 24)	intron (NM_020338, intron 4 of 24)	113838	NM_020338	57178	Hs.193118	NM_020338	ENSG00000108175	ZMIZ1	MIZ|RAI17|TRAFIP10|ZIMP10	zinc finger MIZ-type containing 1	protein-coding
570	chr17	39843547	39846640	+	0	NA	promoter-TSS (NM_005801)	promoter-TSS (NM_005801)	-34	NM_005801	10209	Hs.150580	NM_005801	ENSG00000173812	EIF1	A121|EIF-1|EIF1A|ISO1|SUI1	eukaryotic translation initiation factor 1	protein-coding
419	chr1	17053275	17055758	+	0	NA	Intergenic	Intergenic	6440	NM_001310138	729587		NM_001310138	ENSG00000268674	FAM231C	-	family with sequence similarity 231 member C	protein-coding
700	chr9	35110156	35116076	+	0	NA	intron (NM_025182, intron 1 of 8)	intron (NM_025182, intron 1 of 8)	-1745	NM_001317991	80256	Hs.301696	NM_025182	ENSG00000005238	FAM214B	KIAA1539	family with sequence similarity 214 member B	protein-coding
749	chr22	37591120	37596012	+	0	NA	Intergenic	MIRb|SINE|MIR	-9236	NM_031910	114904	Hs.22011	NM_031910	ENSG00000133466	C1QTNF6	CTFP6|CTRP6|ZACRP6	C1q and TNF related 6	protein-coding
321	chr17	46313303	46325422	+	0	NA	intron (NM_001075099, intron 4 of 12)	intron (NM_001075099, intron 4 of 12)	-52347	NR_131239	105371807	Hs.661105	NR_131239	ENSG00000235300	THRA1/BTR	-	uncharacterized LOC105371807	ncRNA
472	chr6	27796028	27809060	+	0	NA	Intergenic	Intergenic	-3239	NM_003541	8362	Hs.528055	NM_003541	ENSG00000273542	HIST1H4K	H4/d|H4F2iii|H4FD|dJ160A22.1	histone cluster 1 H4 family member k	protein-coding
510	chr2	28020676	28025024	+	0	NA	intron (NM_001287580, intron 8 of 8)	intron (NM_001287580, intron 8 of 8)	28266	NM_004891	9553	Hs.515879	NM_004891	ENSG00000243147	MRPL33	C2orf1|L33mt|MRP-L33|RPL33L	mitochondrial ribosomal protein L33	protein-coding
555	chr17	40728441	40731612	+	0	NA	promoter-TSS (NM_016556)	promoter-TSS (NM_016556)	-177	NR_045670	29893	Hs.383019	NM_013290	ENSG00000131470	PSMC3IP	GT198|HOP2|HUMGT198A|ODG3|TBPIP	PSMC3 interacting protein	protein-coding
519	chr16	844817	846800	+	0	NA	exon (NM_022092, exon 17 of 22)	exon (NM_022092, exon 17 of 22)	4925	NM_016541	51764	Hs.247888	NM_016541	ENSG00000127588	GNG13	G(gamma)13|h2-35	G protein subunit gamma 13	protein-coding
476	chr1	156071275	156077660	+	0	NA	intron (NM_001282625, intron 3 of 12)	intron (NM_001282625, intron 3 of 12)	-9994	NM_170708	4000	Hs.594444	NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
889	chr8	28485083	28490631	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	71124	NR_126027	101929402	Hs.667366	NR_126027	ENSG00000246339	EXTL3-AS1	C8orf50	EXTL3 antisense RNA 1	ncRNA
175	chr7	100181680	100184688	+	0	NA	promoter-TSS (NM_033506)	promoter-TSS (NM_033506)	627	NM_002319	4034	Hs.125742	NM_002319	ENSG00000077454	LRCH4	LRN|LRRN1|LRRN4|PP14183	leucine rich repeats and calponin homology domain containing 4	protein-coding
513	chr9	114802657	114805557	+	0	NA	intron (NM_001282640, intron 17 of 17)	intron (NM_001282640, intron 17 of 17)	109727	NR_039814	100616114		NR_039814	ENSG00000266315	MIR4668	mir-4668	microRNA 4668	ncRNA
2	chr16	3198298	3203748	+	0	NA	Intergenic	Intergenic	6731	NR_132322	197350	Hs.434132	NR_132322	ENSG00000228146	CASP16P	CASP16	caspase 16, pseudogene	pseudo
200	chr3	48341446	48344681	+	0	NA	promoter-TSS (NM_001308428)	promoter-TSS (NM_001308428)	112	NM_001308431	10201	Hs.465558	NM_005793	ENSG00000172113	NME6	IPIA-ALPHA|NDK 6|NM23-H6	NME/NM23 nucleoside diphosphate kinase 6	protein-coding
391	chr6	107779142	107782208	+	0	NA	5' UTR (NM_020381, exon 1 of 8)	5' UTR (NM_020381, exon 1 of 8)	104	NM_020381	57107	Hs.745008	NM_020381	ENSG00000164494	PDSS2	C6orf210|COQ10D3|DLP1|bA59I9.3|hDLP1	decaprenyl diphosphate synthase subunit 2	protein-coding
549	chr9	132220653	132224356	+	0	NA	Intergenic	Intergenic	-28435	NR_038955	100506190	Hs.529860	NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
263	chr11	12187530	12190855	+	0	NA	intron (NM_001346295, intron 3 of 26)	intron (NM_001346295, intron 3 of 26)	3962	NR_106739	102466906		NR_106739	ENSG00000275373	MIR6124	hsa-mir-6124	microRNA 6124	ncRNA
248	chr21	38934991	38939936	+	0	NA	Intergenic	Intergenic	144862	NM_130438	1859	Hs.368240	NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
211	chr9	109972157	109979676	+	0	NA	Intergenic	Intergenic	-69601	NM_002874	5887	Hs.521640	NM_002874	ENSG00000119318	RAD23B	HHR23B|HR23B|P58	RAD23 homolog B, nucleotide excision repair protein	protein-coding
576	chr9	137257104	137261389	+	0	NA	intron (NM_002957, intron 1 of 9)	intron (NM_002957, intron 1 of 9)	-11895	NM_001291920	6256	Hs.590886	NM_002957	ENSG00000186350	RXRA	NR2B1	retinoid X receptor alpha	protein-coding
66	chr1	94244259	94247197	+	0	NA	intron (NM_001261408, intron 2 of 13)	intron (NM_001261408, intron 2 of 13)	-4789	NR_148965	723788	Hs.659312	NR_148965	ENSG00000230439	MIG7	-	mig-7	ncRNA
839	chr6	56791908	56793958	+	0	NA	intron (NM_001144769, intron 2 of 96)	LTR50|LTR|ERVL	26493	NM_001144769	667	Hs.604915	NM_001723	ENSG00000151914	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2	dystonin	protein-coding
180	chr3	160393187	160397073	+	0	NA	5' UTR (NM_025047, exon 1 of 1)	5' UTR (NM_025047, exon 1 of 1)	182	NM_025047	80117	Hs.287702	NM_025047	ENSG00000179674	ARL14	ARF7	ADP ribosylation factor like GTPase 14	protein-coding
744	chr12	53688179	53690429	+	0	NA	promoter-TSS (NM_002624)	promoter-TSS (NM_002624)	69	NM_002624	5204	Hs.655327	NM_002624	ENSG00000123349	PFDN5	MM-1|MM1|PFD5	prefoldin subunit 5	protein-coding
948	chr17	1011006	1016589	+	0	NA	intron (NM_021962, intron 2 of 22)	MER102b|DNA|hAT-Charlie	-1457	NM_001092	29	Hs.159306	NM_001092	ENSG00000159842	ABR	MDB	ABR, RhoGEF and GTPase activating protein	protein-coding
883	chr3	128204468	128209954	+	0	NA	promoter-TSS (NM_001145662)	promoter-TSS (NM_001145662)	162	NM_001145661	2624	Hs.367725	NM_032638	ENSG00000179348	GATA2	DCML|IMD21|MONOMAC|NFE1B	GATA binding protein 2	protein-coding
892	chr19	1465346	1471632	+	0	NA	exon (NM_005883, exon 15 of 15)	exon (NM_005883, exon 15 of 15)	10739	NM_152482	148223	Hs.532840	NM_152482	ENSG00000119559	C19orf25	-	chromosome 19 open reading frame 25	protein-coding
324	chr8	145650780	145656417	+	0	NA	TTS (NM_013432)	TTS (NM_013432)	348	NM_183057	51160	Hs.418175	NM_016208	ENSG00000160948	VPS28	-	VPS28, ESCRT-I subunit	protein-coding
460	chr1	28558342	28560321	+	0	NA	intron (NM_014280, intron 1 of 8)	CpG	211	NM_014280	22826	Hs.433540	NM_014280	ENSG00000126698	DNAJC8	HSPC331|SPF31	DnaJ heat shock protein family (Hsp40) member C8	protein-coding
141	chr1	150599861	150604331	+	0	NA	promoter-TSS (NM_207044)	promoter-TSS (NM_207044)	2	NM_207044	2029	Hs.632456	NM_004436	ENSG00000143420	ENSA	ARPP-19e	endosulfine alpha	protein-coding
113	chr7	73586082	73590630	+	0	NA	promoter-TSS (NM_031992)	promoter-TSS (NM_031992)	-350	NM_022170	7458	Hs.520943	NM_022170	ENSG00000106682	EIF4H	WBSCR1|WSCR1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding
284	chr3	114462195	114468176	+	0	NA	intron (NM_001164343, intron 4 of 11)	intron (NM_001164343, intron 4 of 11)	-2813	NR_039959	100616166		NR_039959	ENSG00000264623	MIR4796	mir-4796	microRNA 4796	ncRNA
933	chr7	7678279	7681868	+	0	NA	promoter-TSS (NM_001302350)	promoter-TSS (NM_001302350)	-194	NM_001302350	729852	Hs.652371	NM_001302348	ENSG00000219545	UMAD1	RPA3-AS1|RPA3OS	UBAP1-MVB12-associated (UMA) domain containing 1	protein-coding
960	chr4	77585309	77587715	+	0	NA	intron (NM_020859, intron 2 of 10)	intron (NM_020859, intron 2 of 10)	89808	NR_039655	100616254		NR_039655	ENSG00000283682	MIR548AH	-	microRNA 548ah	ncRNA
464	chr2	85170518	85175254	+	0	NA	Intergenic	Intergenic	-25345	NM_020122	56888	Hs.654968	NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
714	chr7	73222710	73225425	+	0	NA	Intergenic	Intergenic	-21126	NM_001305	1364	Hs.647036	NM_001305	ENSG00000189143	CLDN4	CPE-R|CPER|CPETR|CPETR1|WBSCR8|hCPE-R	claudin 4	protein-coding
266	chr8	22434813	22440828	+	0	NA	promoter-TSS (NM_198042)	promoter-TSS (NM_198042)	-167	NM_176871	64236	Hs.632034	NM_021630	ENSG00000120913	PDLIM2	MYSTIQUE|SLIM	PDZ and LIM domain 2	protein-coding
221	chr20	62311436	62320256	+	0	NA	intron (NM_001283010, intron 13 of 33)	AluY|SINE|Alu	-12158	NM_003823	8771	Hs.434878	NM_003823	ENSG00000243509	TNFRSF6B	DCR3|DJ583P15.1.1|M68|M68E|TR6	TNF receptor superfamily member 6b	protein-coding
126	chr5	140936242	140938558	+	0	NA	promoter-TSS (NR_038333)	promoter-TSS (NR_038333)	-478	NR_038333	100505658	Hs.655458	NR_038333	ENSG00000246422	LOC100505658	-	uncharacterized LOC100505658	ncRNA
235	chr12	65949137	65951481	+	0	NA	intron (NR_135033, intron 2 of 2)	intron (NR_135033, intron 2 of 2)	782	NR_135033	105369187	Hs.738044	NR_135033	ENSG00000250748	LOC105369187	-	uncharacterized LOC105369187	ncRNA
972	chr10	15251533	15255022	+	0	NA	TTS (NM_001010924)	TTS (NM_001010924)	-42568	NM_001308295	9397	Hs.60339	NM_004808	ENSG00000152465	NMT2	-	N-myristoyltransferase 2	protein-coding
414	chr2	227826586	227829823	+	0	NA	intron (NM_001349069, intron 8 of 8)	Tigger12c|DNA|TcMar-Tigger	127573	NM_001167608	84236	Hs.471514	NM_032276	ENSG00000144468	RHBDD1	RHBDL4|RRP4	rhomboid domain containing 1	protein-coding
953	chr1	204483190	204487202	+	0	NA	promoter-TSS (NM_001278519)	promoter-TSS (NM_001278519)	-311	NM_001278519	4194	Hs.497492	NM_002393	ENSG00000198625	MDM4	HDMX|MDMX|MRP1	MDM4, p53 regulator	protein-coding
781	chr5	68627297	68629612	+	0	NA	promoter-TSS (NM_176816)	promoter-TSS (NM_176816)	89	NM_176816	202243	Hs.654850	NM_176816	ENSG00000183323	CCDC125	KENAE	coiled-coil domain containing 125	protein-coding
249	chr8	23403922	23406220	+	0	NA	intron (NM_001317813, intron 2 of 4)	intron (NM_001317813, intron 2 of 4)	18763	NM_001317814	51312	Hs.596025	NM_016612	ENSG00000147454	SLC25A37	HT015|MFRN|MFRN1|MSC|MSCP|PRO1278|PRO1584|PRO2217	solute carrier family 25 member 37	protein-coding
574	chr10	114234454	114237837	+	0	NA	intron (NM_145206, intron 3 of 7)	intron (NM_145206, intron 3 of 7)	-28841	NM_001351082	64429	Hs.196990	NM_022494	ENSG00000023041	ZDHHC6	DHHC-6|ZNF376	zinc finger DHHC-type containing 6	protein-coding
26	chr14	105217806	105221025	+	0	NA	promoter-TSS (NM_006427)	promoter-TSS (NM_006427)	-55	NM_021709	10572	Hs.112058	NM_006427	ENSG00000184990	SIVA1	CD27BP|SIVA|Siva-1|Siva-2	SIVA1 apoptosis inducing factor	protein-coding
878	chr11	62598015	62601290	+	0	NA	promoter-TSS (NR_135084)	promoter-TSS (NR_135084)	-54	NR_135084	105369332		NR_135084	ENSG00000256690	LOC105369332	-	uncharacterized LOC105369332	ncRNA
220	chr7	120968311	120975182	+	0	NA	exon (NM_016087, exon 3 of 4)	exon (NM_016087, exon 3 of 4)	2656	NM_057168	51384	Hs.272375	NM_016087	ENSG00000002745	WNT16	-	Wnt family member 16	protein-coding
43	chr1	78468144	78472655	+	0	NA	promoter-TSS (NM_001317103)	promoter-TSS (NM_001317103)	-113	NM_007034	11080	Hs.13852	NM_007034	ENSG00000162616	DNAJB4	DNAJW|DjB4|HLJ1	DnaJ heat shock protein family (Hsp40) member B4	protein-coding
751	chr3	53914704	53916840	+	0	NA	intron (NM_022899, intron 1 of 12)	CpG	457	NM_022899	93973	Hs.412186	NM_022899	ENSG00000113812	ACTR8	ARP8|INO80N|hArp8	ARP8 actin related protein 8 homolog	protein-coding
227	chr10	6340085	6343370	+	0	NA	Intergenic	L2c|LINE|L2	-26780	NR_040079	399715		NR_040079	ENSG00000215244	LOC399715	-	uncharacterized LOC399715	ncRNA
254	chr15	57096450	57099922	+	0	NA	Intergenic	MER44C|DNA|TcMar-Tigger	-71902	NM_017661	54816	Hs.511477	NM_017661	ENSG00000137871	ZNF280D	SUHW4|ZNF634	zinc finger protein 280D	protein-coding
531	chr5	16934412	16937072	+	0	NA	intron (NM_012334, intron 1 of 40)	CpG	643	NM_012334	4651	Hs.481720	NM_012334	ENSG00000145555	MYO10	-	myosin X	protein-coding
174	chr5	36643873	36648905	+	0	NA	intron (NM_001289940, intron 3 of 7)	intron (NM_001289940, intron 3 of 7)	39932	NM_001166696	6507	Hs.481918	NM_004172	ENSG00000079215	SLC1A3	EA6|EAAT1|GLAST|GLAST1	solute carrier family 1 member 3	protein-coding
151	chr12	66428957	66430782	+	0	NA	Intergenic	Intergenic	-5023	NR_146530	105369810		NR_146530	ENSG00000256259	LINC02425	-	long intergenic non-protein coding RNA 2425	ncRNA
566	chr2	47315130	47317292	+	0	NA	intron (NM_001163561, intron 6 of 6)	MamRep605|Unknown|Unknown	66306	NM_001163561	285051	Hs.531575	NM_173649	ENSG00000239605	STPG4	C2orf61|GSE	sperm-tail PG-rich repeat containing 4	protein-coding
104	chr11	63948072	63955185	+	0	NA	Intergenic	L2a|LINE|L2	-1116	NM_001282652	10963	Hs.337295	NM_006819	ENSG00000168439	STIP1	HEL-S-94n|HOP|IEF-SSP-3521|P60|STI1|STI1L	stress induced phosphoprotein 1	protein-coding
571	chr6	27639000	27641746	+	0	NA	Intergenic	Intergenic	-21441	NR_038294	100507173	Hs.635987	NR_038292	ENSG00000281706	LINC01012	-	long intergenic non-protein coding RNA 1012	ncRNA
894	chr1	8298298	8300343	+	0	NA	Intergenic	AluSx|SINE|Alu	30588	NR_125998	102724539	Hs.516816	NR_125998	ENSG00000227634	LINC01714	-	long intergenic non-protein coding RNA 1714	ncRNA
511	chr6	119557824	119564632	+	0	NA	intron (NM_005907, intron 6 of 12)	intron (NM_005907, intron 6 of 12)	-90870	NM_001288576	79632	Hs.443789	NM_024581	ENSG00000111879	FAM184A	C6orf60	family with sequence similarity 184 member A	protein-coding
223	chr12	76077764	76080087	+	0	NA	Intergenic	Intergenic	-173507	NM_007043	11103	Hs.645517	NM_007043	ENSG00000111615	KRR1	HRB2|RIP-1	KRR1, small subunit processome component homolog	protein-coding
586	chr10	72090010	72093266	+	0	NA	intron (NR_103467, intron 1 of 2)	intron (NR_103467, intron 1 of 2)	44897	NM_001278213	55222	Hs.7778	NM_018205	ENSG00000172731	LRRC20	-	leucine rich repeat containing 20	protein-coding
940	chr2	227594389	227596702	+	0	NA	TTS (NM_005544)	TTS (NM_005544)	67961	NM_005544	3667	Hs.471508	NM_005544	ENSG00000169047	IRS1	HIRS-1	insulin receptor substrate 1	protein-coding
558	chr19	3727432	3729927	+	0	NA	exon (NM_001267560, exon 3 of 21)	exon (NM_001267560, exon 3 of 21)	6982	NM_001267561	27134	Hs.25527	NM_014428	ENSG00000105289	TJP3	ZO-3|ZO3	tight junction protein 3	protein-coding
