PeakID (cmd=annotatePeaks.pl ./example/HCT116_custom_model_example/tmp/anchor1.tmp hg19)	Chr	Start	End	Strand	Peak Score	Focus Ratio/Region Size	Annotation	Detailed Annotation	Distance to TSS	Nearest PromoterID	Entrez ID	Nearest Unigene	Nearest Refseq	Nearest Ensembl	Gene Name	Gene Alias	Gene Description	Gene Type
67	chr12	12986555	12996089	+	0	NA	Intergenic	AluJr4|SINE|Alu	25042	NM_201224	51202	Hs.719938	NM_016355	ENSG00000213782	DDX47	E4-DBP|HQ0256|MSTP162|RRP3	DEAD-box helicase 47	protein-coding
811	chr19	1234229	1255487	+	0	NA	TTS (NM_001687)	TTS (NM_001687)	3109	NM_001001975	513	Hs.418668	NM_001687	ENSG00000099624	ATP5F1D	ATP5D	ATP synthase F1 subunit delta	protein-coding
636	chr11	6622925	6629704	+	0	NA	intron (NM_001278442, intron 2 of 11)	L2c|LINE|L2	1274	NM_001014795	3611	Hs.706355	NM_004517	ENSG00000166333	ILK	HEL-S-28|ILK-1|ILK-2|P59|p59ILK	integrin linked kinase	protein-coding
409	chr7	100858732	100862273	+	0	NA	promoter-TSS (NM_006349)	promoter-TSS (NM_006349)	-483	NM_006349	10467	Hs.211079	NM_006349	ENSG00000106400	ZNHIT1	CG1I|ZNFN4A1	zinc finger HIT-type containing 1	protein-coding
22	chr5	170813269	170816915	+	0	NA	intron (NM_001355010, intron 1 of 6)	CpG	384	NM_001355010	4869	Hs.557550	NM_002520	ENSG00000181163	NPM1	B23|NPM	nucleophosmin 1	protein-coding
874	chr16	75337215	75341559	+	0	NA	intron (NM_006324, intron 5 of 6)	intron (NM_006324, intron 5 of 6)	-37436	NM_001170715	9564	Hs.479747	NM_014567	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	BCAR1, Cas family scaffold protein	protein-coding
75	chr4	142140603	142143329	+	0	NA	promoter-TSS (NM_001292002)	promoter-TSS (NM_001292002)	-75	NM_014487	27309	Hs.120766	NM_014487	ENSG00000109445	ZNF330	HSA6591|NOA36	zinc finger protein 330	protein-coding
296	chr1	155241648	155244566	+	0	NA	5' UTR (NM_001294339, exon 1 of 12)	5' UTR (NM_001294339, exon 1 of 12)	213	NM_003993	1196	Hs.73986	NM_001291	ENSG00000176444	CLK2	-	CDC like kinase 2	protein-coding
91	chr2	173912468	173915673	+	0	NA	intron (NM_001100397, intron 27 of 27)	intron (NM_001100397, intron 27 of 27)	-26495	NM_016653	51776	Hs.444451	NM_016653	ENSG00000091436	MAP3K20	AZK|CNM6|MLK7|MLT|MLTK|MLTKalpha|MLTKbeta|MRK|SFMMP|ZAK|mlklak|pk	mitogen-activated protein kinase kinase kinase 20	protein-coding
962	chr6	32820042	32823119	+	0	NA	promoter-TSS (NM_002800)	promoter-TSS (NM_002800)	168	NM_000593	6890	Hs.352018	NM_000593	ENSG00000168394	TAP1	ABC17|ABCB2|APT1|D6S114E|PSF-1|PSF1|RING4|TAP1*0102N|TAP1N	transporter 1, ATP binding cassette subfamily B member	protein-coding
743	chr7	79714252	79718350	+	0	NA	Intergenic	LTR37A|LTR|ERV1	-47839	NM_002069	2770	Hs.134587	NM_002069	ENSG00000127955	GNAI1	Gi	G protein subunit alpha i1	protein-coding
981	chr17	45143372	45149330	+	0	NA	Intergenic	Intergenic	-19633	NM_001330240	100506084	Hs.559259	NM_001039083	ENSG00000228696	ARL17B	ARL17|ARL17A	ADP ribosylation factor like GTPase 17B	protein-coding
586	chr10	71889890	71894134	+	0	NA	intron (NM_001198696, intron 1 of 8)	intron (NM_001198696, intron 1 of 8)	678	NM_001198696	84883	Hs.650680	NM_032797	ENSG00000042286	AIFM2	AMID|PRG3	apoptosis inducing factor, mitochondria associated 2	protein-coding
388	chr17	79816434	79820436	+	0	NA	5' UTR (NM_000918, exon 1 of 11)	5' UTR (NM_000918, exon 1 of 11)	109	NM_000918	5034	Hs.464336	NM_000918	ENSG00000185624	P4HB	CLCRP1|DSI|ERBA2L|GIT|P4Hbeta|PDI|PDIA1|PHDB|PO4DB|PO4HB|PROHB	prolyl 4-hydroxylase subunit beta	protein-coding
111	chr3	30644355	30659432	+	0	NA	intron (NM_003242, intron 1 of 6)	intron (NM_003242, intron 1 of 6)	3899	NM_003242	7048	Hs.82028	NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII	transforming growth factor beta receptor 2	protein-coding
780	chr6	2985945	2991563	+	0	NA	intron (NR_026856, intron 1 of 2)	intron (NR_026856, intron 1 of 2)	553	NR_026856	401232	Hs.720158	NM_207495		LINC01011	-	long intergenic non-protein coding RNA 1011	ncRNA
242	chr3	111456737	111460658	+	0	NA	intron (NM_001134437, intron 1 of 17)	intron (NM_001134437, intron 1 of 17)	7370	NM_001134437	90102	Hs.603252	NM_145753	ENSG00000144824	PHLDB2	LL5b|LL5beta	pleckstrin homology like domain family B member 2	protein-coding
423	chr6	86158071	86161706	+	0	NA	exon (NM_002526, exon 1 of 9)	exon (NM_002526, exon 1 of 9)	586	NM_001204813	4907	Hs.153952	NM_002526	ENSG00000135318	NT5E	CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT	5'-nucleotidase ecto	protein-coding
929	chr10	97877709	97886039	+	0	NA	Intergenic	HAL1|LINE|L1	-7598	NM_014803	9849	Hs.600823	NM_014803	ENSG00000177853	ZNF518A	ZNF518	zinc finger protein 518A	protein-coding
313	chr8	143867683	143871502	+	0	NA	Intergenic	Intergenic	-1584	NM_003695	8581	Hs.415762	NM_003695	ENSG00000167656	LY6D	E48|Ly-6D	lymphocyte antigen 6 family member D	protein-coding
402	chr5	14034105	14040382	+	0	NA	Intergenic	Intergenic	-92654	NM_001369	1767	Hs.212360	NM_001369	ENSG00000039139	DNAH5	CILD3|DNAHC5|HL1|KTGNR|PCD	dynein axonemal heavy chain 5	protein-coding
212	chr7	73183252	73185405	+	0	NA	exon (NM_001306, exon 1 of 1)	exon (NM_001306, exon 1 of 1)	272	NM_001306	1365	Hs.647023	NM_001306	ENSG00000165215	CLDN3	C7orf1|CPE-R2|CPETR2|HRVP1|RVP1	claudin 3	protein-coding
295	chr12	76306520	76310166	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	117213	NM_007350	22822	Hs.602085	NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
308	chr19	56088700	56093474	+	0	NA	intron (NM_152600, intron 1 of 1)	(CAGAGA)n|Simple_repeat|Simple_repeat	1124	NM_152600	163033	Hs.112529	NM_152600	ENSG00000218891	ZNF579	-	zinc finger protein 579	protein-coding
133	chr17	76336666	76341170	+	0	NA	Intergenic	Intergenic	17242	NM_003955	9021	Hs.527973	NM_003955	ENSG00000184557	SOCS3	ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3	suppressor of cytokine signaling 3	protein-coding
408	chr8	22842781	22846069	+	0	NA	promoter-TSS (NM_001160036)	promoter-TSS (NM_001160036)	-505	NM_001160036	23221	Hs.372688	NM_015178	ENSG00000008853	RHOBTB2	DBC2	Rho related BTB domain containing 2	protein-coding
757	chr19	49147532	49150488	+	0	NA	non-coding (NR_136241, exon 1 of 9)	non-coding (NR_136241, exon 1 of 9)	559	NM_001217	770	Hs.428446	NM_001217	ENSG00000063180	CA11	CA-RP|CA-RP II|CA-XI|CARP-2|CARPX1	carbonic anhydrase 11	protein-coding
864	chr1	155035608	155038114	+	0	NA	promoter-TSS (NR_040773)	promoter-TSS (NR_040773)	-394	NR_040773	100505666	Hs.657533	NR_040772		DCST1-AS1	-	DCST1 antisense RNA 1	ncRNA
934	chr4	774041	777506	+	0	NA	promoter-TSS (NR_036511)	promoter-TSS (NR_036511)	-137	NR_036511	100129917	Hs.731755	NR_036511	ENSG00000249592	LOC100129917	-	uncharacterized LOC100129917	ncRNA
403	chr1	110575286	110578850	+	0	NA	promoter-TSS (NM_033088)	promoter-TSS (NM_033088)	-155	NM_033088	85369	Hs.584996	NM_033088	ENSG00000143093	STRIP1	FAM40A|FAR11A	striatin interacting protein 1	protein-coding
401	chr1	150334482	150339396	+	0	NA	5' UTR (NM_015203, exon 1 of 11)	5' UTR (NM_015203, exon 1 of 11)	352	NM_001297674	23248	Hs.213666	NM_015203	ENSG00000163125	RPRD2	HSPC099|KIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding
204	chr10	71889890	71894134	+	0	NA	intron (NM_001198696, intron 1 of 8)	intron (NM_001198696, intron 1 of 8)	678	NM_001198696	84883	Hs.650680	NM_032797	ENSG00000042286	AIFM2	AMID|PRG3	apoptosis inducing factor, mitochondria associated 2	protein-coding
607	chr15	40390075	40392795	+	0	NA	intron (NM_001003943, intron 3 of 3)	intron (NM_001003943, intron 3 of 3)	6852	NM_001003942	90427	Hs.591104	NM_033503	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
788	chr11	67763143	67766115	+	0	NA	intron (NM_030930, intron 8 of 11)	intron (NM_030930, intron 8 of 11)	6966	NM_030930	81622	Hs.502989	NM_030930	ENSG00000110057	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1, TLR signaling regulator	protein-coding
791	chr17	16254890	16257479	+	0	NA	intron (NM_181716, intron 1 of 4)	CpG	628	NM_181716	201161	Hs.433422	NM_181716	ENSG00000166582	CENPV	3110013H01Rik|CENP-V|PRR6|p30	centromere protein V	protein-coding
889	chr8	28225312	28230413	+	0	NA	intron (NM_018660, intron 1 of 9)	intron (NM_018660, intron 1 of 9)	16115	NM_018660	55893	Hs.435535	NM_018660	ENSG00000186918	ZNF395	HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14	zinc finger protein 395	protein-coding
751	chr3	53031942	53034452	+	0	NA	intron (NM_016329, intron 1 of 20)	intron (NM_016329, intron 1 of 20)	46892	NM_016329	51460	Hs.343679	NM_016329	ENSG00000163935	SFMBT1	RU1|SFMBT|hSFMBT	Scm like with four mbt domains 1	protein-coding
69	chr10	91810158	91812483	+	0	NA	Intergenic	L1PA16|LINE|L1	-94190	NR_110655	101926924	Hs.500498	NR_110655	ENSG00000226159	LINC01375	-	long intergenic non-protein coding RNA 1375	ncRNA
219	chr17	36954036	36957583	+	0	NA	TTS (NM_017748)	TTS (NM_017748)	349	NM_003559	8396	Hs.260603	NM_003559	ENSG00000276293	PIP4K2B	PI5P4KB|PIP5K2B|PIP5KIIB|PIP5KIIbeta|PIP5P4KB	phosphatidylinositol-5-phosphate 4-kinase type 2 beta	protein-coding
830	chr1	858643	861123	+	0	NA	Intergenic	CpG	-1238	NM_152486	148398	Hs.335293	NM_152486	ENSG00000187634	SAMD11	MRS	sterile alpha motif domain containing 11	protein-coding
738	chr17	8088650	8094876	+	0	NA	3' UTR (NM_017622, exon 1 of 1)	3' UTR (NM_017622, exon 1 of 1)	1500	NR_039746	100616406		NR_039746	ENSG00000283160	MIR4521	mir-4521	microRNA 4521	ncRNA
598	chr11	12106317	12113241	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-22344	NR_144415	9645	Hs.501928	NM_014632	ENSG00000133816	MICAL2	MICAL-2|MICAL2PV1|MICAL2PV2	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
985	chr10	92070060	92081763	+	0	NA	Intergenic	Intergenic	224651	NR_110657	101926942	Hs.382666	NR_110657	ENSG00000236373	LOC101926942	-	uncharacterized LOC101926942	ncRNA
565	chr2	74708478	74711648	+	0	NA	promoter-TSS (NR_027749)	promoter-TSS (NR_027749)	-137	NR_027749	64427	Hs.557709	NM_022492	ENSG00000115282	TTC31	-	tetratricopeptide repeat domain 31	protein-coding
433	chr1	27648128	27650046	+	0	NA	intron (NM_032125, intron 1 of 5)	intron (NM_032125, intron 1 of 5)	451	NR_037576	84065	Hs.469171	NM_032125	ENSG00000186501	TMEM222	C1orf160	transmembrane protein 222	protein-coding
79	chr22	35775614	35778407	+	0	NA	promoter-TSS (NM_002133)	promoter-TSS (NM_002133)	-50	NM_002133	3162	Hs.517581	NM_002133	ENSG00000100292	HMOX1	HMOX1D|HO-1|HSP32|bK286B10	heme oxygenase 1	protein-coding
624	chr2	85151203	85154993	+	0	NA	Intergenic	MER91C|DNA|hAT-Tip100	20335	NM_021103	9168	Hs.446574	NM_021103	ENSG00000034510	TMSB10	MIG12|TB10	thymosin beta 10	protein-coding
858	chr9	130726655	130732635	+	0	NA	intron (NM_001035254, intron 1 of 10)	MIRb|SINE|MIR	13167	NM_001035254	399665	Hs.535972	NM_203305	ENSG00000167106	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	family with sequence similarity 102 member A	protein-coding
100	chr14	77412087	77418101	+	0	NA	Intergenic	LTR33|LTR|ERVL	-10887	NR_133913	105370578	Hs.574184	NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
856	chr6	56506337	56509517	+	0	NA	promoter-TSS (NM_001723)	promoter-TSS (NM_001723)	-233	NM_015548	667	Hs.604915	NM_001723	ENSG00000151914	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2	dystonin	protein-coding
819	chr10	32164488	32168544	+	0	NA	intron (NM_001270697, intron 3 of 18)	intron (NM_001270697, intron 3 of 18)	31338	NM_001270699	94134	Hs.499264	NM_018287	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
251	chr1	153579771	153590832	+	0	NA	intron (NM_080388, intron 1 of 2)	intron (NM_080388, intron 1 of 2)	343	NR_133645	140576	Hs.515714	NM_080388	ENSG00000188643	S100A16	AAG13|DT1P1A7|S100F	S100 calcium binding protein A16	protein-coding
587	chr8	123700847	123703778	+	0	NA	intron (NR_126348, intron 2 of 3)	MLT1L|LTR|ERVL-MaLR	4033	NR_126348	104266958	Hs.575540	NR_126348	ENSG00000253819	LINC01151	-	long intergenic non-protein coding RNA 1151	ncRNA
775	chr8	74882955	74885117	+	0	NA	intron (NM_001204861, intron 1 of 5)	intron (NM_001204861, intron 1 of 5)	107	NM_001204862	6921	Hs.533437	NM_005648	ENSG00000154582	ELOC	SIII|TCEB1	elongin C	protein-coding
179	chr17	40476288	40478788	+	0	NA	intron (NM_213662, intron 15 of 23)	intron (NM_213662, intron 15 of 23)	37464	NM_001288720	6776	Hs.437058	NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
739	chr19	55917826	55920921	+	0	NA	promoter-TSS (NM_014501)	promoter-TSS (NM_014501)	-48	NM_014501	27338	Hs.396393	NM_014501	ENSG00000108106	UBE2S	E2-EPF|E2EPF|EPF5	ubiquitin conjugating enzyme E2 S	protein-coding
664	chr11	47196775	47200768	+	0	NA	promoter-TSS (NM_001242832)	promoter-TSS (NM_001242832)	-95	NM_032389	84364	Hs.436204	NM_032389	ENSG00000149182	ARFGAP2	IRZ|NBLA10535|ZFP289|ZNF289	ADP ribosylation factor GTPase activating protein 2	protein-coding
177	chr2	62689002	62693257	+	0	NA	Intergenic	LTR1D|LTR|ERV1	42475	NM_198276	200728	Hs.308028	NM_198276	ENSG00000186889	TMEM17	-	transmembrane protein 17	protein-coding
924	chr16	3929602	3932337	+	0	NA	promoter-TSS (NM_001079846)	promoter-TSS (NM_001079846)	-848	NM_001079846	1387	Hs.459759	NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|RSTS|RSTS1	CREB binding protein	protein-coding
913	chr16	67839297	67841166	+	0	NA	promoter-TSS (NM_001288994)	promoter-TSS (NM_001288994)	324	NM_001320239	57610	Hs.368569	NM_020850	ENSG00000141084	RANBP10	-	RAN binding protein 10	protein-coding
845	chr10	112287928	112292613	+	0	NA	Intergenic	CpG	32645	NM_004419	1847	Hs.2128	NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
895	chr14	75036309	75040666	+	0	NA	intron (NM_000428, intron 3 of 35)	intron (NM_000428, intron 3 of 35)	40547	NM_000428	4053	Hs.512776	NM_000428	ENSG00000119681	LTBP2	C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3	latent transforming growth factor beta binding protein 2	protein-coding
916	chr19	1810645	1814203	+	0	NA	promoter-TSS (NR_047593)	promoter-TSS (NR_047593)	-149	NM_138813	148229	Hs.306212	NM_138813	ENSG00000130270	ATP8B3	ATPIK	ATPase phospholipid transporting 8B3	protein-coding
868	chr3	149015192	149019395	+	0	NA	Intergenic	Intergenic	33966	NM_001184723	116441	Hs.22026	NM_138786	ENSG00000163762	TM4SF18	L6D	transmembrane 4 L six family member 18	protein-coding
648	chr17	40073341	40077329	+	0	NA	promoter-TSS (NM_198830)	promoter-TSS (NM_198830)	-60	NM_001303274	47	Hs.387567	NM_001096	ENSG00000131473	ACLY	ACL|ATPCL|CLATP	ATP citrate lyase	protein-coding
998	chr6	129958169	129978865	+	0	NA	intron (NM_033515, intron 1 of 14)	intron (NM_033515, intron 1 of 14)	62853	NM_033515	93663	Hs.486458	NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
569	chr8	126706904	126715776	+	0	NA	Intergenic	L2c|LINE|L2	252101	NR_038447	100130231	Hs.729642	NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
972	chr10	15241073	15246033	+	0	NA	Intergenic	Intergenic	-32844	NM_001308295	9397	Hs.60339	NM_004808	ENSG00000152465	NMT2	-	N-myristoyltransferase 2	protein-coding
654	chr19	47986202	47988823	+	0	NA	promoter-TSS (NR_111923)	promoter-TSS (NR_111923)	9	NM_007059	11133	Hs.25441	NM_007059	ENSG00000118162	KPTN	2E4|MRT41	kaptin, actin binding protein	protein-coding
860	chr6	41512445	41515387	+	0	NA	promoter-TSS (NM_138457)	promoter-TSS (NM_138457)	65	NR_126417	101060264	Hs.571099	NR_126415	ENSG00000234753	FOXP4-AS1	-	FOXP4 antisense RNA 1	ncRNA
752	chr6	7310564	7315782	+	0	NA	intron (NM_003144, intron 1 of 7)	CpG	374	NM_001292008	6745	Hs.114033	NM_003144	ENSG00000124783	SSR1	TRAPA	signal sequence receptor subunit 1	protein-coding
581	chr6	125473336	125477385	+	0	NA	promoter-TSS (NM_001292026)	promoter-TSS (NM_001292026)	25	NM_001292026	7164	Hs.591347	NM_003287	ENSG00000111907	TPD52L1	D53	tumor protein D52 like 1	protein-coding
153	chr3	48074404	48077106	+	0	NA	intron (NM_030885, intron 1 of 3)	intron (NM_030885, intron 1 of 3)	55014	NM_030885	4134	Hs.517949	NM_002375	ENSG00000047849	MAP4	-	microtubule associated protein 4	protein-coding
480	chr12	66339298	66344697	+	0	NA	intron (NM_003483, intron 3 of 4)	intron (NM_003483, intron 3 of 4)	-66050	NM_001292023	100129940	Hs.685856	NM_001292023	ENSG00000197301	LOC100129940	-	uncharacterized LOC100129940	protein-coding
326	chr17	75249659	75252986	+	0	NA	Intergenic	Intergenic	-26170	NM_001293695	10801	Hs.440932	NM_006640	ENSG00000184640	SEPT9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SINT1|SeptD1	septin 9	protein-coding
302	chr9	139920848	139924184	+	0	NA	intron (NM_207511, intron 1 of 2)	CpG	224	NM_001606	20	Hs.421202	NM_001606	ENSG00000107331	ABCA2	ABC2	ATP binding cassette subfamily A member 2	protein-coding
885	chr16	3173520	3176076	+	0	NA	TTS (NR_110900)	TTS (NR_110900)	-9199	NR_024166	81854	Hs.669490	NR_024166		ZNF205-AS1	-	ZNF205 antisense RNA 1	ncRNA
274	chr8	96235376	96239205	+	0	NA	Intergenic	Intergenic	-8688	NR_046232	619344	Hs.741630	NR_046232	ENSG00000253351	LINC01298	C8orf69	long intergenic non-protein coding RNA 1298	ncRNA
407	chr7	27174570	27177614	+	0	NA	Intergenic	Intergenic	-3891	NR_038832	100133311	Hs.610216	NR_038831	ENSG00000254369	HOXA-AS3	HOXA6as	HOXA cluster antisense RNA 3	ncRNA
380	chr2	232543081	232547503	+	0	NA	Intergenic	Intergenic	-27943	NM_002823	5757	Hs.459927	NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
689	chr12	14954790	14957434	+	0	NA	promoter-TSS (NM_175874)	promoter-TSS (NM_175874)	289	NM_016312	51729	Hs.655138	NM_016312	ENSG00000084463	WBP11	NPWBP|PPP1R165|SIPP1|WBP-11	WW domain binding protein 11	protein-coding
186	chr16	68689992	68695291	+	0	NA	intron (NM_001317195, intron 2 of 15)	intron (NM_001317195, intron 2 of 15)	13902	NM_001317196	1001	Hs.191842	NM_001793	ENSG00000062038	CDH3	CDHP|HJMD|PCAD	cadherin 3	protein-coding
510	chr2	27254873	27257222	+	0	NA	intron (NM_017727, intron 1 of 16)	CpG	273	NM_017727	54867	Hs.533934	NM_017727	ENSG00000119777	TMEM214	-	transmembrane protein 214	protein-coding
143	chr10	114234454	114237837	+	0	NA	intron (NM_145206, intron 3 of 7)	intron (NM_145206, intron 3 of 7)	-28841	NM_001351082	64429	Hs.196990	NM_022494	ENSG00000023041	ZDHHC6	DHHC-6|ZNF376	zinc finger DHHC-type containing 6	protein-coding
606	chr6	31514982	31517091	+	0	NA	exon (NM_001144961, exon 2 of 4)	exon (NM_001144961, exon 2 of 4)	683	NM_001144961	4795	Hs.2764	NM_005007	ENSG00000204498	NFKBIL1	IKBL|LST1|NFKBIL	NFKB inhibitor like 1	protein-coding
48	chr5	131890811	131895050	+	0	NA	5' UTR (NM_005732, exon 1 of 25)	5' UTR (NM_005732, exon 1 of 25)	314	NM_005732	10111	Hs.633509	NM_005732	ENSG00000113522	RAD50	NBSLD|RAD502|hRad50	RAD50 double strand break repair protein	protein-coding
400	chr1	201225027	201230039	+	0	NA	Intergenic	(GAGTG)n|Simple_repeat|Simple_repeat	-25047	NM_000299	5317	Hs.497350	NM_000299	ENSG00000081277	PKP1	B6P	plakophilin 1	protein-coding
279	chr3	114471458	114480457	+	0	NA	intron (NM_001164343, intron 4 of 11)	intron (NM_001164343, intron 4 of 11)	2167	NM_001164344	26137	Hs.202577	NM_015642	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|PRIMS|ZNF288	zinc finger and BTB domain containing 20	protein-coding
631	chr11	61580822	61588574	+	0	NA	promoter-TSS (NM_013402)	promoter-TSS (NM_013402)	-169	NM_013402	3992	Hs.503546	NM_013402	ENSG00000149485	FADS1	D5D|FADS6|FADSD5|LLCDL1|TU12	fatty acid desaturase 1	protein-coding
31	chr1	192775631	192781052	+	0	NA	intron (NM_002923, intron 1 of 4)	intron (NM_002923, intron 1 of 4)	172	NM_002923	5997	Hs.78944	NM_002923	ENSG00000116741	RGS2	G0S8	regulator of G protein signaling 2	protein-coding
957	chr12	65726429	65730799	+	0	NA	intron (NM_001031679, intron 4 of 6)	intron (NM_001031679, intron 4 of 6)	55847	NM_001193461	253827	Hs.339024	NM_198080	ENSG00000174099	MSRB3	DFNB74	methionine sulfoxide reductase B3	protein-coding
398	chr11	6254878	6257698	+	0	NA	promoter-TSS (NM_001098794)	promoter-TSS (NM_001098794)	-347	NM_032127	84067	Hs.501793	NM_032127	ENSG00000051009	FAM160A2	C11orf56|FHIP	family with sequence similarity 160 member A2	protein-coding
712	chr11	65373258	65375063	+	0	NA	intron (NM_002419, intron 6 of 9)	intron (NM_002419, intron 6 of 9)	7560	NM_002419	4296	Hs.502872	NM_002419	ENSG00000173327	MAP3K11	MEKK11|MLK-3|MLK3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding
226	chr19	19495895	19498075	+	0	NA	intron (NM_001359631, intron 1 of 10)	CpG	373	NM_001359631	54815	Hs.118964	NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
520	chr15	51890817	51894618	+	0	NA	intron (NM_001174117, intron 1 of 40)	MER54A|LTR|ERVL	22250	NM_015263	23312	Hs.511386	NM_015263	ENSG00000104093	DMXL2	DFNA71|PEPNS|RC3	Dmx like 2	protein-coding
47	chr6	24493963	24496353	+	0	NA	promoter-TSS (NM_170740)	promoter-TSS (NM_170740)	-39	NM_001080	7915	Hs.371723	NM_001080	ENSG00000112294	ALDH5A1	SSADH|SSDH	aldehyde dehydrogenase 5 family member A1	protein-coding
900	chr12	65819242	65833127	+	0	NA	intron (NM_001031679, intron 5 of 6)	intron (NM_001031679, intron 5 of 6)	124907	NR_135033	105369187	Hs.738044	NR_135033	ENSG00000250748	LOC105369187	-	uncharacterized LOC105369187	ncRNA
141	chr1	150205995	150210102	+	0	NA	intron (NM_030920, intron 1 of 6)	intron (NM_030920, intron 1 of 6)	456	NM_001136478	81611	Hs.656466	NM_030920	ENSG00000143401	ANP32E	LANP-L|LANPL	acidic nuclear phosphoprotein 32 family member E	protein-coding
542	chr22	18110361	18112933	+	0	NA	promoter-TSS (NM_001039366)	promoter-TSS (NM_001039366)	-59	NM_001039366	529	Hs.517338	NM_001696	ENSG00000131100	ATP6V1E1	ARCL2C|ATP6E|ATP6E2|ATP6V1E|P31|Vma4	ATPase H+ transporting V1 subunit E1	protein-coding
763	chr12	65880159	65897562	+	0	NA	intron (NR_120431, intron 3 of 3)	intron (NR_120431, intron 3 of 3)	62231	NR_135033	105369187	Hs.738044	NR_135033	ENSG00000250748	LOC105369187	-	uncharacterized LOC105369187	ncRNA
946	chr3	110788138	110794149	+	0	NA	5' UTR (NM_001243288, exon 1 of 9)	intron (NM_001243286, intron 1 of 5)	128	NM_001243288	25945	Hs.293917	NM_015480	ENSG00000177707	NECTIN3	CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3	nectin cell adhesion molecule 3	protein-coding
115	chr1	6613195	6615994	+	0	NA	promoter-TSS (NM_024654)	promoter-TSS (NM_024654)	64	NM_024654	79707	Hs.59425	NM_024654	ENSG00000162408	NOL9	Grc3|NET6	nucleolar protein 9	protein-coding
112	chr1	28654347	28657479	+	0	NA	intron (NM_017638, intron 1 of 2)	AluSp|SINE|Alu	400	NM_001127350	54797	Hs.479911	NM_017638	ENSG00000130772	MED18	SRB5|p28b	mediator complex subunit 18	protein-coding
220	chr7	120951843	120955671	+	0	NA	Intergenic	Intergenic	-11664	NM_016087	51384	Hs.272375	NM_016087	ENSG00000002745	WNT16	-	Wnt family member 16	protein-coding
561	chr6	170121536	170126215	+	0	NA	intron (NM_133325, intron 1 of 11)	intron (NM_133325, intron 1 of 11)	231	NM_133325	55274	Hs.435933	NM_018288	ENSG00000130024	PHF10	BAF45A|XAP135	PHD finger protein 10	protein-coding
865	chr11	66788989	66792243	+	0	NA	promoter-TSS (NM_001318775)	promoter-TSS (NM_001318775)	-200	NM_177963	91683	Hs.287636	NM_177963	ENSG00000173227	SYT12	SYT11|sytXII	synaptotagmin 12	protein-coding
705	chr19	10762428	10767542	+	0	NA	promoter-TSS (NM_012218)	promoter-TSS (NM_012218)	48	NM_004516	3609	Hs.465885	NM_004516	ENSG00000129351	ILF3	CBTF|DRBF|DRBP76|MMP4|MPHOSPH4|MPP4|NF-AT-90|NF110|NF110b|NF90|NF90a|NF90b|NFAR|NFAR-1|NFAR2|TCP110|TCP80	interleukin enhancer binding factor 3	protein-coding
280	chr10	101189043	101192881	+	0	NA	promoter-TSS (NM_002079)	promoter-TSS (NM_002079)	-432	NM_002079	2805	Hs.500756	NM_002079	ENSG00000120053	GOT1	AST1|ASTQTL1|GIG18|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1	protein-coding
547	chr7	868826	874488	+	0	NA	promoter-TSS (NM_001130965)	promoter-TSS (NM_001130965)	-485	NM_001130965	23353	Hs.438072	NM_025154	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
695	chr5	139640194	139642620	+	0	NA	intron (NM_002622, intron 3 of 3)	intron (NM_002622, intron 3 of 3)	41282	NM_002622	5201	Hs.483564	NM_002622	ENSG00000113068	PFDN1	PDF|PFD1	prefoldin subunit 1	protein-coding
503	chr13	41836520	41838563	+	0	NA	5' UTR (NM_001354073, exon 4 of 15)	5' UTR (NM_001354073, exon 4 of 15)	276	NM_004294	9617	Hs.382176	NM_004294	ENSG00000120662	MTRF1	MRF1|MTTRF1|RF1	mitochondrial translation release factor 1	protein-coding
977	chr1	6216373	6218859	+	0	NA	intron (NM_015557, intron 3 of 41)	intron (NM_015557, intron 3 of 41)	22578	NM_015557	26038	Hs.522898	NM_015557	ENSG00000116254	CHD5	CHD-5	chromodomain helicase DNA binding protein 5	protein-coding
1000	chr10	17690904	17693711	+	0	NA	intron (NM_001324286, intron 1 of 10)	MIRb|SINE|MIR	6183	NM_001324287	8027	Hs.335391	NM_003473	ENSG00000136738	STAM	STAM-1|STAM1	signal transducing adaptor molecule	protein-coding
168	chr22	19157038	19162082	+	0	NA	non-coding (NR_103767, exon 1 of 1)	non-coding (NR_103767, exon 1 of 1)	341	NR_103767	100652736	Hs.572896	NR_103767		LINC01311	-	long intergenic non-protein coding RNA 1311	ncRNA
642	chr7	99004468	99007944	+	0	NA	promoter-TSS (NM_003910)	promoter-TSS (NM_003910)	99	NM_014891	11333	Hs.632296	NM_014891	ENSG00000106244	PDAP1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding
781	chr5	68512426	68515982	+	0	NA	intron (NM_033281, intron 1 of 3)	intron (NM_033281, intron 1 of 3)	631	NM_033281	92259	Hs.631971	NM_033281	ENSG00000134056	MRPS36	DC47|MRP-S36	mitochondrial ribosomal protein S36	protein-coding
525	chr6	28723504	28727827	+	0	NA	Intergenic	Intergenic	-103413	NR_135285	387055	Hs.369401	NR_135285	ENSG00000235570	LINC00533	C6orf38|C6orf39	long intergenic non-protein coding RNA 533	ncRNA
963	chr10	126478700	126481858	+	0	NA	intron (NM_212554, intron 1 of 6)	CpG	231	NM_212554	399818	Hs.720819	NM_212554	ENSG00000203791	EEF1AKMT2	C10orf138|Efm4|METTL10	EEF1A lysine methyltransferase 2	protein-coding
56	chr7	130632250	130633623	+	0	NA	intron (NR_109853, intron 4 of 5)	L1MB3|LINE|L1	34713	NR_109780	100506860	Hs.635013	NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
55	chr10	69852356	69859347	+	0	NA	Intergenic	Intergenic	-10023	NR_045662	84665	Hs.55205	NM_032578	ENSG00000138347	MYPN	CMD1DD|CMH22|MYOP|NEM11|RCM4	myopalladin	protein-coding
194	chr3	52079349	52081990	+	0	NA	Intergenic	Intergenic	9792	NM_001947	1849	Hs.591664	NM_001947	ENSG00000164086	DUSP7	MKPX|PYST2	dual specificity phosphatase 7	protein-coding
477	chr3	127315736	127318748	+	0	NA	promoter-TSS (NM_004526)	promoter-TSS (NM_004526)	42	NR_073375	4171	Hs.477481	NM_004526	ENSG00000073111	MCM2	BM28|CCNL1|CDCL1|D3S3194|DFNA70|MITOTIN|cdc19	minichromosome maintenance complex component 2	protein-coding
378	chr10	126752063	126755379	+	0	NA	intron (NM_001321013, intron 1 of 9)	intron (NM_001321013, intron 1 of 9)	-32282	NR_036178	100423041		NR_036178	ENSG00000264572	MIR4296	-	microRNA 4296	ncRNA
696	chr3	128416137	128418692	+	0	NA	Intergenic	Intergenic	-27565	NM_004637	7879	Hs.684374	NM_004637	ENSG00000075785	RAB7A	PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
846	chr4	75185246	75188250	+	0	NA	Intergenic	Intergenic	12561	NR_073117	255324	Hs.401237	NM_001013442	ENSG00000182585	EPGN	ALGV3072|EPG|PRO9904	epithelial mitogen	protein-coding
570	chr17	38224409	38229893	+	0	NA	intron (NM_199334, intron 1 of 8)	C-rich|Low_complexity|Low_complexity	8083	NM_003250	7067	Hs.724	NM_003250	ENSG00000126351	THRA	AR7|CHNG6|EAR7|ERB-T-1|ERBA|ERBA1|NR1A1|THRA1|THRA2|c-ERBA-1	thyroid hormone receptor alpha	protein-coding
877	chr11	63683073	63688860	+	0	NA	Intergenic	CpG	-1650	NM_173587	283248	Hs.98788	NM_173587	ENSG00000167771	RCOR2	-	REST corepressor 2	protein-coding
952	chr6	29599757	29602072	+	0	NA	promoter-TSS (NM_001319053)	promoter-TSS (NM_001319053)	-2	NM_001319053	2550	Hs.167017	NM_001470	ENSG00000204681	GABBR1	GABABR1|GABBR1-3|GB1|GPRC3A	gamma-aminobutyric acid type B receptor subunit 1	protein-coding
702	chr3	48883585	48887002	+	0	NA	promoter-TSS (NM_004157)	promoter-TSS (NM_004157)	-10	NM_001321983	5576	Hs.631923	NM_004157	ENSG00000114302	PRKAR2A	PKR2|PRKAR2	protein kinase cAMP-dependent type II regulatory subunit alpha	protein-coding
824	chr5	92493502	92502810	+	0	NA	Intergenic	Intergenic	408893	NR_109825	441094	Hs.457407	NR_015369	ENSG00000237187	NR2F1-AS1	-	NR2F1 antisense RNA 1	ncRNA
661	chr6	129920190	129922539	+	0	NA	intron (NM_033515, intron 11 of 14)	intron (NM_033515, intron 11 of 14)	110006	NM_033515	93663	Hs.486458	NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
744	chr12	53623686	53627956	+	0	NA	5' UTR (NM_001243730, exon 1 of 9)	5' UTR (NM_001243730, exon 1 of 9)	219	NM_001243730	5916	Hs.1497	NM_000966	ENSG00000172819	RARG	NR1B3|RARC	retinoic acid receptor gamma	protein-coding
555	chr17	40669249	40674486	+	0	NA	intron (NM_005177, intron 20 of 20)	intron (NM_005177, intron 20 of 20)	5661	NR_049808	100847046		NR_049808	ENSG00000283929	MIR5010	mir-5010	microRNA 5010	ncRNA
393	chr9	114772925	114777647	+	0	NA	Intergenic	Intergenic	80906	NR_039814	100616114		NR_039814	ENSG00000266315	MIR4668	mir-4668	microRNA 4668	ncRNA
454	chr5	139553700	139556430	+	0	NA	intron (NM_032412, intron 1 of 2)	CpG	412	NM_032412	84418	Hs.529798	NM_032412	ENSG00000120306	CYSTM1	C5orf32|ORF1-FL49	cysteine rich transmembrane module containing 1	protein-coding
728	chr1	68150066	68154288	+	0	NA	exon (NM_001199741, exon 2 of 3)	exon (NM_001199741, exon 2 of 3)	1317	NM_001199741	1647	Hs.80409	NM_001924	ENSG00000116717	GADD45A	DDIT1|GADD45	growth arrest and DNA damage inducible alpha	protein-coding
697	chr17	3537640	3541769	+	0	NA	promoter-TSS (NM_013276)	promoter-TSS (NM_013276)	-58	NM_001031681	1497	Hs.187667	NM_004937	ENSG00000040531	CTNS	CTNS-LSB|PQLC4	cystinosin, lysosomal cystine transporter	protein-coding
247	chrX	44730512	44736617	+	0	NA	intron (NM_021140, intron 2 of 28)	intron (NM_021140, intron 2 of 28)	1143	NM_001291416	7403	Hs.522616	NM_021140	ENSG00000147050	KDM6A	KABUK2|UTX|bA386N14.2	lysine demethylase 6A	protein-coding
77	chr1	149869629	149872446	+	0	NA	promoter-TSS (NM_016074)	promoter-TSS (NM_016074)	-98	NM_001321026	51027	Hs.13880	NM_016074	ENSG00000178096	BOLA1	CGI-143	bolA family member 1	protein-coding
299	chr19	49587397	49590218	+	0	NA	5' UTR (NM_003089, exon 1 of 10)	5' UTR (NM_003089, exon 1 of 10)	410	NM_001301069	6625	Hs.467097	NM_003089	ENSG00000104852	SNRNP70	RNPU1Z|RPU1|SNRP70|Snp1|U1-70K|U170K|U1AP|U1RNP	small nuclear ribonucleoprotein U1 subunit 70	protein-coding
735	chr8	102014685	102017195	+	0	NA	Intergenic	Intergenic	-48342	NR_033962	441374	Hs.652045	NR_033962	ENSG00000248599	FLJ42969	-	uncharacterized LOC441374	ncRNA
373	chr8	132845901	132848627	+	0	NA	Intergenic	Intergenic	-69071	NR_136615	23167	Hs.204564	NM_015137	ENSG00000132294	EFR3A	-	EFR3 homolog A	protein-coding
478	chr1	946654	951362	+	0	NA	intron (NM_005101, intron 1 of 1)	intron (NM_005101, intron 1 of 1)	161	NM_005101	9636	Hs.458485	NM_005101	ENSG00000187608	ISG15	G1P2|IFI15|IMD38|IP17|UCRP|hUCRP	ISG15 ubiquitin-like modifier	protein-coding
927	chr12	76087662	76123045	+	0	NA	Intergenic	Intergenic	-199935	NM_007043	11103	Hs.645517	NM_007043	ENSG00000111615	KRR1	HRB2|RIP-1	KRR1, small subunit processome component homolog	protein-coding
357	chr11	32912774	32917295	+	0	NA	intron (NM_001076786, intron 1 of 12)	CpG	310	NM_001076786	79832	Hs.369368	NM_024774	ENSG00000060749	QSER1	-	glutamine and serine rich 1	protein-coding
618	chr2	190625468	190629092	+	0	NA	promoter-TSS (NR_102429)	promoter-TSS (NR_102429)	-226	NR_102429	101409258	Hs.738558	NR_102429		OSGEPL1-AS1	-	OSGEPL1 antisense RNA 1	ncRNA
645	chr19	49198426	49202513	+	0	NA	intron (NM_000511, intron 1 of 1)	AluSp|SINE|Alu	1241	NM_001097638	2524	Hs.579928	NM_000511	ENSG00000176920	FUT2	B12QTL1|SE|SEC2|Se2|sej	fucosyltransferase 2	protein-coding
171	chr3	145965046	145970926	+	0	NA	intron (NM_001128304, intron 2 of 10)	intron (NM_001128304, intron 2 of 10)	665	NM_001128305	57088	Hs.477869	NM_020353	ENSG00000114698	PLSCR4	TRA1	phospholipid scramblase 4	protein-coding
928	chr5	92262686	92264705	+	0	NA	Intergenic	Intergenic	643354	NR_109825	441094	Hs.457407	NR_015369	ENSG00000237187	NR2F1-AS1	-	NR2F1 antisense RNA 1	ncRNA
328	chr1	1309280	1312976	+	0	NA	promoter-TSS (NM_017900)	promoter-TSS (NM_017900)	-310	NM_017900	54998	Hs.632515	NM_017900	ENSG00000175756	AURKAIP1	AIP|AKIP|MRP-S38	aurora kinase A interacting protein 1	protein-coding
679	chr4	48017146	48020297	+	0	NA	promoter-TSS (NM_207330)	promoter-TSS (NM_207330)	-68	NM_207330	152519	Hs.134190	NM_207330	ENSG00000163293	NIPAL1	NPAL1	NIPA like domain containing 1	protein-coding
787	chr2	8815243	8826583	+	0	NA	intron (NR_110153, intron 1 of 1)	intron (NR_110153, intron 1 of 1)	1078	NR_110153	100506299	Hs.439031	NR_110153	ENSG00000235092	ID2-AS1	-	ID2 antisense RNA 1	ncRNA
431	chr17	46686165	46697465	+	0	NA	exon (NM_024016, exon 1 of 2)	exon (NM_024016, exon 1 of 2)	486	NM_024016	3218	Hs.514292	NM_024016	ENSG00000120068	HOXB8	HOX2|HOX2D|Hox-2.4	homeobox B8	protein-coding
70	chr16	85586268	85589464	+	0	NA	Intergenic	CpG	-57163	NM_001134473	23199	Hs.461647	NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
63	chr11	64882072	64885862	+	0	NA	TTS (NM_014205)	TTS (NM_014205)	1243	NM_014205	741	Hs.121025	NM_014205	ENSG00000174276	ZNHIT2	C11orf5|FON	zinc finger HIT-type containing 2	protein-coding
754	chr10	99330220	99336281	+	0	NA	intron (NM_001291219, intron 1 of 7)	AluSx|SINE|Alu	994	NM_001291219	26287	Hs.73708	NM_020349	ENSG00000165887	ANKRD2	ARPP	ankyrin repeat domain 2	protein-coding
630	chr9	127418897	127423753	+	0	NA	intron (NR_038975, intron 1 of 1)	intron (NR_038975, intron 1 of 1)	610	NR_038975	100379345	Hs.660412	NR_038975	ENSG00000224020	MIR181A2HG	-	MIR181A2 host gene	ncRNA
404	chr1	44247922	44250570	+	0	NA	intron (NM_001270465, intron 2 of 7)	intron (NM_001270465, intron 2 of 7)	-55048	NR_106727	102464830		NR_106727	ENSG00000283477	MIR6079	hsa-mir-6079	microRNA 6079	ncRNA
185	chr8	94711700	94715394	+	0	NA	promoter-TSS (NR_033858)	promoter-TSS (NR_033858)	812	NR_104267	137392	Hs.125038	NM_145269	ENSG00000188343	FAM92A	FAM92A1	family with sequence similarity 92 member A	protein-coding
81	chr7	35733311	35736093	+	0	NA	promoter-TSS (NM_022373)	promoter-TSS (NM_022373)	70	NM_022373	64224	Hs.643051	NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
336	chr3	52122492	52126113	+	0	NA	intron (NM_001161580, intron 9 of 9)	intron (NM_001161580, intron 9 of 9)	-25174	NR_027331	100128378	Hs.640106	NM_001123039		LINC00696	C3orf74	long intergenic non-protein coding RNA 696	ncRNA
779	chr10	105109632	105111863	+	0	NA	exon (NM_032154, exon 1 of 7)	exon (NM_032154, exon 1 of 7)	144	NM_032154	84108	Hs.335808	NM_032154	ENSG00000156374	PCGF6	MBLR|RNF134	polycomb group ring finger 6	protein-coding
198	chr17	43126786	43130688	+	0	NA	5' UTR (NM_001288655, exon 1 of 5)	5' UTR (NM_001288655, exon 1 of 5)	148	NM_001288655	79877	Hs.463148	NM_024819	ENSG00000172992	DCAKD	-	dephospho-CoA kinase domain containing	protein-coding
812	chr8	95131337	95133565	+	0	NA	Intergenic	MER52A|LTR|ERV1	88364	NM_004063	1015	Hs.591853	NM_004063	ENSG00000079112	CDH17	CDH16|HPT-1|HPT1	cadherin 17	protein-coding
382	chr10	103823507	103827178	+	0	NA	exon (NM_024747, exon 1 of 1)	exon (NM_024747, exon 1 of 1)	218	NM_024747	79803	Hs.125133	NM_024747	ENSG00000166189	HPS6	BLOC2S3	HPS6, biogenesis of lysosomal organelles complex 2 subunit 3	protein-coding
766	chr2	38302352	38305608	+	0	NA	promoter-TSS (NM_000104)	promoter-TSS (NM_000104)	-657	NM_000104	1545	Hs.154654	NM_000104	ENSG00000138061	CYP1B1	ASGD6|CP1B|CYPIB1|GLC3A|P4501B1	cytochrome P450 family 1 subfamily B member 1	protein-coding
364	chr6	26595620	26598320	+	0	NA	promoter-TSS (NM_013375)	promoter-TSS (NM_013375)	-201	NM_013375	29777	Hs.254406	NM_013375	ENSG00000146109	ABT1	Esf2|hABT1	activator of basal transcription 1	protein-coding
78	chr19	4811188	4814266	+	0	NA	Intergenic	AluSc8|SINE|Alu	19027	NM_182919	148022	Hs.29344	NM_014261	ENSG00000127666	TICAM1	IIAE6|MyD88-3|PRVTIRB|TICAM-1|TRIF	toll like receptor adaptor molecule 1	protein-coding
241	chr11	62275039	62277340	+	0	NA	intron (NM_024060, intron 4 of 5)	intron (NM_024060, intron 4 of 5)	36970	NM_001346446	79026	Hs.502756	NM_001620	ENSG00000124942	AHNAK	AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
117	chr7	100080098	100082251	+	0	NA	promoter-TSS (NM_173564)	promoter-TSS (NM_173564)	-376	NM_173564	222950	Hs.320086	NM_173564	ENSG00000166924	NYAP1	C7orf51	neuronal tyrosine phosphorylated phosphoinositide-3-kinase adaptor 1	protein-coding
33	chr9	33875627	33877992	+	0	NA	intron (NM_017811, intron 1 of 4)	AluY|SINE|Alu	57553	NM_001282530	55833	Hs.493739	NM_018449	ENSG00000137073	UBAP2	UBAP-2	ubiquitin associated protein 2	protein-coding
306	chr1	52606322	52609452	+	0	NA	5' UTR (NM_004799, exon 1 of 19)	5' UTR (NM_004799, exon 1 of 19)	121	NM_007324	9372	Hs.532345	NM_004799	ENSG00000157077	ZFYVE9	MADHIP|NSP|PPP1R173|SARA|SMADIP	zinc finger FYVE-type containing 9	protein-coding
87	chr1	25030661	25033756	+	0	NA	Intergenic	Intergenic	-39552	NM_013943	25932	Hs.440544	NM_013943	ENSG00000169504	CLIC4	CLIC4L|H1|MTCLIC|huH1|p64H1	chloride intracellular channel 4	protein-coding
29	chrX	118601860	118604227	+	0	NA	promoter-TSS (NR_134915)	promoter-TSS (NR_134915)	18	NR_134914	100303728	Hs.714405	NR_028443	ENSG00000224281	SLC25A5-AS1	-	SLC25A5 antisense RNA 1	ncRNA
842	chr6	30773466	30791437	+	0	NA	non-coding (NR_130726, exon 2 of 2)	non-coding (NR_130726, exon 2 of 2)	15985	NR_130726	401247		NR_130726	ENSG00000214894	LINC00243	C6orf214|NCRNA00243	long intergenic non-protein coding RNA 243	ncRNA
451	chr8	126297343	126305473	+	0	NA	intron (NM_173685, intron 5 of 7)	L2a|LINE|L2	-141155	NM_025195	10221	Hs.444947	NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
814	chr2	227617697	227628770	+	0	NA	intron (NM_005544, intron 1 of 1)	intron (NM_005544, intron 1 of 1)	40273	NM_005544	3667	Hs.471508	NM_005544	ENSG00000169047	IRS1	HIRS-1	insulin receptor substrate 1	protein-coding
559	chr6	30734415	30739391	+	0	NA	intron (NR_138037, intron 1 of 3)	intron (NR_138037, intron 1 of 3)	2301	NR_138037	105375013	Hs.348584	NR_138037	ENSG00000228022	HCG20	NCRNA00149	HLA complex group 20 (non-protein coding)	ncRNA
771	chr19	10611883	10615064	+	0	NA	promoter-TSS (NM_012289)	promoter-TSS (NM_012289)	8	NM_012289	9817	Hs.465870	NM_012289	ENSG00000079999	KEAP1	INrf2|KLHL19	kelch like ECH associated protein 1	protein-coding
667	chr3	48505741	48509898	+	0	NA	TTS (NM_001271023)	TTS (NM_001271023)	190	NM_033629	11277	Hs.707026	NM_007248	ENSG00000213689	TREX1	AGS1|CRV|DRN3|HERNS	three prime repair exonuclease 1	protein-coding
235	chr12	65880159	65897562	+	0	NA	intron (NR_120431, intron 3 of 3)	intron (NR_120431, intron 3 of 3)	62231	NR_135033	105369187	Hs.738044	NR_135033	ENSG00000250748	LOC105369187	-	uncharacterized LOC105369187	ncRNA
651	chr17	55498775	55504709	+	0	NA	intron (NM_170721, intron 5 of 9)	MIRb|SINE|MIR	99216	NR_110808	101927557	Hs.639984	NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA
116	chr10	93681942	93684650	+	0	NA	promoter-TSS (NM_003972)	promoter-TSS (NM_003972)	-440	NM_003972	9044	Hs.500526	NM_003972	ENSG00000095564	BTAF1	MOT1|TAF(II)170|TAF172|TAFII170	B-TFIID TATA-box binding protein associated factor 1	protein-coding
272	chr8	67576863	67580297	+	0	NA	exon (NM_025054, exon 1 of 3)	exon (NM_025054, exon 1 of 3)	872	NM_025054	80124	Hs.632066	NM_025054	ENSG00000175073	VCPIP1	DUBA3|VCIP135	valosin containing protein interacting protein 1	protein-coding
822	chr3	178786963	178790653	+	0	NA	intron (NM_022470, intron 1 of 5)	intron (NM_022470, intron 1 of 5)	848	NM_022470	64393	Hs.371609	NM_022470	ENSG00000172667	ZMAT3	PAG608|WIG-1|WIG1	zinc finger matrin-type 3	protein-coding
675	chr14	68400423	68402274	+	0	NA	intron (NM_002877, intron 7 of 10)	intron (NM_002877, intron 7 of 10)	111039	NM_001321815	5890	Hs.172587	NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
996	chr9	33262606	33265416	+	0	NA	promoter-TSS (NM_016410)	promoter-TSS (NM_016410)	748	NM_004323	573	Hs.377484	NM_004323	ENSG00000107262	BAG1	BAG-1|HAP|RAP46	BCL2 associated athanogene 1	protein-coding
36	chr17	74348519	74351660	+	0	NA	5' UTR (NM_002766, exon 1 of 10)	5' UTR (NM_002766, exon 1 of 10)	141	NM_001330503	5635	Hs.77498	NM_002766	ENSG00000161542	PRPSAP1	PAP39	phosphoribosyl pyrophosphate synthetase associated protein 1	protein-coding
441	chr8	126269998	126275512	+	0	NA	intron (NM_173685, intron 5 of 7)	MIR3|SINE|MIR	168690	NR_146192	286053	Hs.388297	NM_173685	ENSG00000156831	NSMCE2	C8orf36|MMS21|NSE2|ZMIZ7	NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase	protein-coding
367	chr16	2517207	2519488	+	0	NA	promoter-TSS (NR_135198)	promoter-TSS (NR_135198)	-133	NR_135198	729652	Hs.638553	NR_135198	ENSG00000259895	LOC729652	-	uncharacterized LOC729652	ncRNA
898	chr16	70379274	70382165	+	0	NA	promoter-TSS (NM_001320526)	promoter-TSS (NM_001320526)	-13	NM_001320525	55308	Hs.656037	NM_018332	ENSG00000168872	DDX19A	DDX19-DDX19L|DDX19L	DEAD-box helicase 19A	protein-coding
366	chr1	42418167	42423275	+	0	NA	intron (NR_038261, intron 1 of 3)	intron (NR_038261, intron 1 of 3)	-36225	NR_038260	59269	Hs.403972	NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	human immunodeficiency virus type I enhancer binding protein 3	protein-coding
978	chr6	159134030	159161861	+	0	NA	intron (NM_001009991, intron 10 of 16)	AluY|SINE|Alu	37840	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
756	chr7	100780316	100784864	+	0	NA	TTS (NM_000602)	TTS (NM_000602)	12220	NM_000602	5054	Hs.414795	NM_000602	ENSG00000106366	SERPINE1	PAI|PAI-1|PAI1|PLANH1	serpin family E member 1	protein-coding
337	chr2	112810675	112815608	+	0	NA	5' UTR (NM_001329914, exon 1 of 19)	5' UTR (NM_001329914, exon 1 of 19)	341	NM_032824	84910	Hs.656298	NM_032824	ENSG00000153214	TMEM87B	-	transmembrane protein 87B	protein-coding
362	chr2	227617697	227628770	+	0	NA	intron (NM_005544, intron 1 of 1)	intron (NM_005544, intron 1 of 1)	40273	NM_005544	3667	Hs.471508	NM_005544	ENSG00000169047	IRS1	HIRS-1	insulin receptor substrate 1	protein-coding
731	chr10	99445635	99448973	+	0	NA	promoter-TSS (NM_021732)	promoter-TSS (NM_021732)	-289	NM_021732	60370	Hs.23918	NM_021732	ENSG00000119986	AVPI1	PP5395|VIP32|VIT32	arginine vasopressin induced 1	protein-coding
758	chr9	21545737	21594667	+	0	NA	Intergenic	Intergenic	-10405	NR_027054	554202	Hs.458096	NR_027054		MIR31HG	LncHIFCAR|hsa-lnc-31	MIR31 host gene	ncRNA
932	chr17	44846897	44850837	+	0	NA	intron (NM_030753, intron 2 of 4)	CpG	47259	NM_030753	7473	Hs.445884	NM_030753	ENSG00000108379	WNT3	INT4|TETAMS	Wnt family member 3	protein-coding
419	chr1	17025098	17030608	+	0	NA	intron (NR_026567, intron 6 of 10)	CpG-519	18799	NR_026567	284729	Hs.548239	NR_026567	ENSG00000268869	ESPNP	dJ1182A14.1	espin pseudogene	pseudo
633	chr2	9769061	9771830	+	0	NA	exon (NM_006826, exon 2 of 6)	exon (NM_006826, exon 2 of 6)	739	NM_006826	10971	Hs.74405	NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
84	chr12	58157036	58162391	+	0	NA	intron (NM_000785, intron 2 of 8)	CpG-5529	1263	NM_000785	1594	Hs.524528	NM_000785	ENSG00000111012	CYP27B1	CP2B|CYP1|CYP1alpha|CYP27B|P450c1|PDDR|VDD1|VDDR|VDDRI|VDR	cytochrome P450 family 27 subfamily B member 1	protein-coding
528	chr16	31145123	31148037	+	0	NA	intron (NM_002773, intron 1 of 5)	intron (NM_002773, intron 1 of 5)	503	NM_002773	5652	Hs.75799	NM_002773	ENSG00000052344	PRSS8	CAP1|PROSTASIN	serine protease 8	protein-coding
7	chr22	41839123	41845740	+	0	NA	5' UTR (NM_016272, exon 1 of 2)	5' UTR (NM_016272, exon 1 of 2)	596	NM_016272	10766	Hs.474978	NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
205	chr12	76021909	76024065	+	0	NA	Intergenic	L2a|LINE|L2	-117569	NM_007043	11103	Hs.645517	NM_007043	ENSG00000111615	KRR1	HRB2|RIP-1	KRR1, small subunit processome component homolog	protein-coding
365	chr17	46100314	46105226	+	0	NA	TTS (NM_016429)	TTS (NM_016429)	11843	NR_029687	406943		NR_029687	ENSG00000207947	MIR152	MIRN152|mir-152	microRNA 152	ncRNA
580	chr6	88180666	88184528	+	0	NA	promoter-TSS (NM_001168398)	promoter-TSS (NM_001168398)	-46	NM_001168398	10559	Hs.423163	NM_006416	ENSG00000164414	SLC35A1	CDG2F|CMPST|CST|hCST	solute carrier family 35 member A1	protein-coding
254	chr15	57023853	57026876	+	0	NA	intron (NM_001002843, intron 1 of 20)	CpG	920	NM_017661	54816	Hs.511477	NM_017661	ENSG00000137871	ZNF280D	SUHW4|ZNF634	zinc finger protein 280D	protein-coding
768	chr8	126321441	126323135	+	0	NA	intron (NM_173685, intron 5 of 7)	intron (NM_173685, intron 5 of 7)	-120275	NM_025195	10221	Hs.444947	NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
834	chr2	10181576	10184678	+	0	NA	promoter-TSS (NM_001177716)	promoter-TSS (NM_001177716)	401	NR_135558	101929882	Hs.405158	NR_135558		LOC101929882	-	uncharacterized LOC101929882	ncRNA
124	chr19	38893152	38895078	+	0	NA	exon (NM_174905, exon 2 of 8)	exon (NM_174905, exon 2 of 8)	340	NM_174905	147965	Hs.355162	NM_174905	ENSG00000130244	FAM98C	-	family with sequence similarity 98 member C	protein-coding
269	chr7	1569736	1574605	+	0	NA	TTS (NR_149036)	TTS (NR_149036)	1802	NM_002360	7975	Hs.520612	NM_002360	ENSG00000198517	MAFK	NFE2U|P18	MAF bZIP transcription factor K	protein-coding
243	chr17	73081486	73093649	+	0	NA	intron (NM_004695, intron 2 of 6)	intron (NM_004695, intron 2 of 6)	3531	NM_004695	9121	Hs.592095	NM_004695	ENSG00000170190	SLC16A5	MCT5|MCT6	solute carrier family 16 member 5	protein-coding
953	chr1	202856100	202859188	+	0	NA	intron (NM_002871, intron 1 of 1)	intron (NM_002871, intron 1 of 1)	741	NM_002871	5877	Hs.90875	NM_002871	ENSG00000183155	RABIF	MSS4|RASGFR3|RASGRF3	RAB interacting factor	protein-coding
333	chr6	33238265	33249401	+	0	NA	exon (NM_022551, exon 4 of 6).3	exon (NM_022551, exon 4 of 6).3	-1084	NM_003782	8705	Hs.534375	NM_003782	ENSG00000235863	B3GALT4	BETA3GALT4|GALT2|GALT4	beta-1,3-galactosyltransferase 4	protein-coding
592	chr16	1818993	1825223	+	0	NA	promoter-TSS (NM_002513)	promoter-TSS (NM_002513)	-398	NM_002513	4832	Hs.514065	NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
97	chr12	65698601	65704949	+	0	NA	intron (NM_001193460, intron 2 of 7)	intron (NM_001193460, intron 2 of 7)	29008	NM_001193461	253827	Hs.339024	NM_198080	ENSG00000174099	MSRB3	DFNB74	methionine sulfoxide reductase B3	protein-coding
505	chr6	27123975	27126349	+	0	NA	Intergenic	Intergenic	9757	NR_036096	100422934		NR_036096	ENSG00000265565	MIR3143	mir-3143	microRNA 3143	ncRNA
40	chr7	25003712	25007433	+	0	NA	intron (NM_015550, intron 1 of 22)	intron (NM_015550, intron 1 of 22)	14259	NM_015550	26031	Hs.520259	NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
643	chr17	7302719	7304517	+	0	NA	intron (NR_037719, intron 2 of 9)	AluSp|SINE|Alu	3832	NR_037719	100529211	Hs.534591	NR_037719		TMEM256-PLSCR3	C17orf61-PLSCR3	TMEM256-PLSCR3 readthrough (NMD candidate)	ncRNA
508	chr6	42191261	42196391	+	0	NA	3' UTR (NM_001297573, exon 18 of 18)	3' UTR (NM_001297573, exon 18 of 18)	-8193	NM_018141	55173	Hs.380887	NM_018141	ENSG00000048544	MRPS10	MRP-S10|PNAS-122	mitochondrial ribosomal protein S10	protein-coding
800	chr6	27197986	27199513	+	0	NA	Intergenic	AluSq|SINE|Alu	-16753	NM_005865	10279	Hs.274407	NM_005865	ENSG00000112812	PRSS16	TSSP	serine protease 16	protein-coding
162	chr11	73204136	73206944	+	0	NA	intron (NM_015159, intron 1 of 7)	intron (NM_015159, intron 1 of 7)	103694	NM_001286050	23201	Hs.475334	NM_015159	ENSG00000054965	FAM168A	KIAA0280|TCRP1	family with sequence similarity 168 member A	protein-coding
1	chr9	37783807	37786241	+	0	NA	promoter-TSS (NM_016042)	promoter-TSS (NM_016042)	65	NM_016042	51010	Hs.602571	NM_016042	ENSG00000107371	EXOSC3	CGI-102|PCH1B|RRP40|Rrp40p|bA3J10.7|hRrp-40|p10	exosome component 3	protein-coding
136	chr19	12791137	12793985	+	0	NA	promoter-TSS (NM_001206974)	promoter-TSS (NM_001206974)	140	NM_013406	1725	Hs.79064	NM_001930	ENSG00000095059	DHPS	DHS|DS|MIG13	deoxyhypusine synthase	protein-coding
566	chr2	47229576	47232684	+	0	NA	intron (NM_001288955, intron 7 of 18)	intron (NM_001288955, intron 7 of 18)	-62136	NM_001171508	90411	Hs.662152	NM_139279	ENSG00000180398	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2	protein-coding
435	chr11	62266286	62268816	+	0	NA	intron (NM_024060, intron 4 of 5)	intron (NM_024060, intron 4 of 5)	45608	NM_001346446	79026	Hs.502756	NM_001620	ENSG00000124942	AHNAK	AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
620	chr2	227287256	227294908	+	0	NA	Intergenic	Charlie20a|DNA|hAT-Charlie	232427	NR_049887	100847053		NR_049887	ENSG00000263363	MIR5702	-	microRNA 5702	ncRNA
440	chr17	79824330	79830948	+	0	NA	exon (NM_001301242, exon 2 of 7)	exon (NM_001301242, exon 2 of 7)	1211	NM_001185077	396	Hs.159161	NM_004309	ENSG00000141522	ARHGDIA	GDIA1|HEL-S-47e|NPHS8|RHOGDI|RHOGDI-1	Rho GDP dissociation inhibitor alpha	protein-coding
275	chr14	68676396	68679439	+	0	NA	intron (NM_002877, intron 7 of 10)	intron (NM_002877, intron 7 of 10)	387608	NM_001321815	5890	Hs.172587	NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
666	chr1	66755869	66770169	+	0	NA	intron (NM_001037341, intron 7 of 16)	intron (NM_001037341, intron 7 of 16)	-34772	NM_001037339	5142	Hs.198072	NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
489	chr13	37571717	37578246	+	0	NA	intron (NM_181503, intron 1 of 10)	CpG	303	NM_181503	11340	Hs.294041	NM_181503	ENSG00000120699	EXOSC8	CIP3|EAP2|OIP2|PCH1C|RRP43|Rrp43p|bA421P11.3|p9	exosome component 8	protein-coding
285	chr1	150231014	150233465	+	0	NA	intron (NM_012113, intron 1 of 10)	intron (NM_012113, intron 1 of 10)	-1854	NR_145745	109616989		NR_145745		SNORD13C	-	small nucleolar RNA, C/D box 13C	snoRNA
352	chr10	105648867	105651307	+	0	NA	intron (NM_024928, intron 8 of 9)	MIRc|SINE|MIR	27958	NM_024928	79991	Hs.62314	NM_024928	ENSG00000107960	STN1	AAF-44|AAF44|OBFC1|RPA-32|bA541N10.2	STN1, CST complex subunit	protein-coding
122	chr16	89159457	89162425	+	0	NA	intron (NM_001127214, intron 1 of 9)	intron (NM_001127214, intron 1 of 9)	724	NM_001127214	197322	Hs.461727	NM_174917	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
201	chr17	73662908	73664721	+	0	NA	promoter-TSS (NM_004259)	promoter-TSS (NM_004259)	-545	NM_001003716	9400	Hs.632229	NM_004259	ENSG00000108469	RECQL5	RECQ5	RecQ like helicase 5	protein-coding
904	chr2	232525690	232533077	+	0	NA	Intergenic	AluSx|SINE|Alu	-43852	NM_002823	5757	Hs.459927	NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
513	chr9	114392091	114396038	+	0	NA	intron (NM_004125, intron 1 of 2)	CpG	432	NM_004125	552891	Hs.534196	NM_004125	ENSG00000244115	DNAJC25-GNG10	-	DNAJC25-GNG10 readthrough	protein-coding
93	chr1	156082128	156101458	+	0	NA	intron (NM_005572, intron 1 of 9)	AluSz|SINE|Alu	-4115	NM_001282624	4000	Hs.594444	NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
844	chr16	28832794	28838159	+	0	NA	intron (NM_148416, intron 1 of 22)	CpG	1107	NM_148416	11273	Hs.460499	NM_007245	ENSG00000168488	ATXN2L	A2D|A2LG|A2LP|A2RP	ataxin 2 like	protein-coding
273	chr1	93643891	93647991	+	0	NA	promoter-TSS (NM_206886)	promoter-TSS (NM_206886)	305	NR_030761	50999	Hs.482873	NM_016040	ENSG00000117500	TMED5	CGI-100|p24g2|p28	transmembrane p24 trafficking protein 5	protein-coding
514	chr19	1019748	1022627	+	0	NA	promoter-TSS (NR_125730).7	promoter-TSS (NR_125730).7	-46	NM_033420	91304	Hs.515003	NM_033420	ENSG00000182087	TMEM259	ASBABP1|C19orf6|MBRL|MEMBRALIN|R32184_3	transmembrane protein 259	protein-coding
500	chr8	95650333	95658225	+	0	NA	exon (NM_001122825, exon 2 of 14)	exon (NM_001122825, exon 2 of 14)	915	NM_001122827	54845	Hs.487471	NM_017697	ENSG00000104413	ESRP1	RBM35A|RMB35A	epithelial splicing regulatory protein 1	protein-coding
772	chr2	43404602	43407965	+	0	NA	Intergenic	Intergenic	47462	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
297	chr7	156740668	156743867	+	0	NA	promoter-TSS (NM_001353366)	promoter-TSS (NM_001353366)	-150	NM_138400	64434	Hs.15825	NM_138400	ENSG00000146909	NOM1	C7orf3|PPP1R113|SGD1	nucleolar protein with MIF4G domain 1	protein-coding
3	chr17	73041531	73045103	+	0	NA	promoter-TSS (NR_110834)	promoter-TSS (NR_110834)	38	NR_110834	23510	Hs.514468	NM_015353	ENSG00000180901	KCTD2	-	potassium channel tetramerization domain containing 2	protein-coding
815	chr2	224324178	224327249	+	0	NA	Intergenic	HAL1|LINE|L1	141504	NM_003469	7857	Hs.516726	NM_003469	ENSG00000171951	SCG2	CHGC|EM66|SN|SgII	secretogranin II	protein-coding
158	chr6	53211795	53214725	+	0	NA	5' UTR (NM_001301856, exon 1 of 8)	5' UTR (NM_001301856, exon 1 of 8)	483	NM_001301856	60481	Hs.520189	NM_021814	ENSG00000012660	ELOVL5	HELO1|SCA38|dJ483K16.1	ELOVL fatty acid elongase 5	protein-coding
918	chr3	193719623	193722647	+	0	NA	intron (NR_033944, intron 1 of 2)	CpG	313	NR_033944	647323	Hs.652830	NR_033944	ENSG00000214146	LINC02026	-	long intergenic non-protein coding RNA 2026	ncRNA
234	chr1	16401912	16403943	+	0	NA	Intergenic	Intergenic	-2800	NM_182623	348487	Hs.126825	NM_182623	ENSG00000185519	FAM131C	C1orf117	family with sequence similarity 131 member C	protein-coding
452	chr9	71733967	71739017	+	0	NA	intron (NM_001170414, intron 1 of 21)	CpG	312	NM_001170414	9414	Hs.50382	NM_004817	ENSG00000119139	TJP2	C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2	tight junction protein 2	protein-coding
249	chr8	23383592	23388429	+	0	NA	promoter-TSS (NM_016612)	promoter-TSS (NM_016612)	-298	NM_001317814	51312	Hs.596025	NM_016612	ENSG00000147454	SLC25A37	HT015|MFRN|MFRN1|MSC|MSCP|PRO1278|PRO1584|PRO2217	solute carrier family 25 member 37	protein-coding
653	chr10	126733393	126735920	+	0	NA	intron (NM_001321013, intron 1 of 9)	intron (NM_001321013, intron 1 of 9)	-13217	NR_036178	100423041		NR_036178	ENSG00000264572	MIR4296	-	microRNA 4296	ncRNA
603	chr5	177538620	177542044	+	0	NA	promoter-TSS (NM_015111)	promoter-TSS (NM_015111)	-224	NM_015111	23138	Hs.101761	NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
108	chr11	59316300	59320689	+	0	NA	Intergenic	tRNA-Val-GTA|tRNA|tRNA	36108	NM_001004711	390199	Hs.553757	NM_001004711	ENSG00000172742	OR4D9	OR11-253	olfactory receptor family 4 subfamily D member 9	protein-coding
805	chr7	130622921	130631145	+	0	NA	intron (NR_109855, intron 4 of 4)	intron (NR_109855, intron 4 of 4)	28810	NR_109780	100506860	Hs.635013	NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
156	chr6	28723504	28727827	+	0	NA	Intergenic	Intergenic	-103413	NR_135285	387055	Hs.369401	NR_135285	ENSG00000235570	LINC00533	C6orf38|C6orf39	long intergenic non-protein coding RNA 533	ncRNA
35	chrX	119003995	119007335	+	0	NA	promoter-TSS (NM_004541)	promoter-TSS (NM_004541)	-69	NM_004541	4694	Hs.534168	NM_004541	ENSG00000125356	NDUFA1	CI-MWFE|MWFE|ZNF183	NADH:ubiquinone oxidoreductase subunit A1	protein-coding
903	chr1	94723254	94725861	+	0	NA	Intergenic	Intergenic	-11241	NM_001328664	9411	Hs.483238	NM_004815	ENSG00000137962	ARHGAP29	PARG1	Rho GTPase activating protein 29	protein-coding
465	chr17	25619570	25623097	+	0	NA	promoter-TSS (NR_039748)	promoter-TSS (NR_039748)	286	NM_001348350	26118	Hs.446017	NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
106	chr9	132235640	132270858	+	0	NA	intron (NR_038955, intron 1 of 4)	MIRb|SINE|MIR	2310	NR_038955	100506190	Hs.529860	NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
872	chr19	1061649	1068972	+	0	NA	promoter-TSS (NM_001258328)	promoter-TSS (NM_001258328)	-612	NM_001258328	23526	Hs.465521	NM_012292	ENSG00000180448	ARHGAP45	HA-1|HLA-HA1|HMHA1	Rho GTPase activating protein 45	protein-coding
315	chr7	100270397	100273938	+	0	NA	intron (NM_005273, intron 1 of 9)	CpG	804	NM_005273	2783	Hs.185172	NM_005273	ENSG00000172354	GNB2	-	G protein subunit beta 2	protein-coding
949	chr11	118776854	118801965	+	0	NA	Intergenic	Intergenic	-7796	NM_182557	283149	Hs.414740	NM_182557	ENSG00000186174	BCL9L	BCL9-2|DLNB11	B cell CLL/lymphoma 9 like	protein-coding
777	chr1	169749069	169751847	+	0	NA	Intergenic	Intergenic	13372	NM_001320201	92342	Hs.33922	NM_033418	ENSG00000171806	METTL18	AsTP2|C1orf156|HPM1	methyltransferase like 18	protein-coding
161	chr9	139970683	139973264	+	0	NA	promoter-TSS (NM_207309)	promoter-TSS (NM_207309)	20	NM_207309	91373	Hs.142076	NM_207309	ENSG00000197355	UAP1L1	-	UDP-N-acetylglucosamine pyrophosphorylase 1 like 1	protein-coding
534	chr3	45146030	45149384	+	0	NA	intron (NM_022842, intron 4 of 8)	intron (NM_022842, intron 4 of 8)	40207	NM_178181	64866	Hs.476093	NM_022842	ENSG00000163814	CDCP1	CD318|SIMA135|TRASK	CUB domain containing protein 1	protein-coding
745	chr10	74019021	74024495	+	0	NA	Intergenic	AluJr4|SINE|Alu	-11919	NM_019058	54541	Hs.744875	NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
619	chr13	41343652	41346754	+	0	NA	exon (NM_005830, exon 1 of 7)	exon (NM_005830, exon 1 of 7)	144	NM_005830	10240	Hs.596607	NM_005830	ENSG00000102738	MRPS31	IMOGN38|MRP-S31|S31mt	mitochondrial ribosomal protein S31	protein-coding
396	chr4	143324338	143331211	+	0	NA	intron (NM_001101669, intron 5 of 25)	intron (NM_001101669, intron 5 of 25)	439914	NM_001101669	8821	Hs.176376	NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
608	chr1	27225610	27227958	+	0	NA	exon (NM_022078, exon 1 of 7)	exon (NM_022078, exon 1 of 7)	178	NM_022078	63906	Hs.10903	NM_022078	ENSG00000198746	GPATCH3	GPATC3	G-patch domain containing 3	protein-coding
85	chr10	61467694	61470561	+	0	NA	intron (NM_001323978, intron 1 of 6)	CpG	522	NM_001323979	220963	Hs.499709	NM_194298	ENSG00000165449	SLC16A9	C10orf36|MCT9	solute carrier family 16 member 9	protein-coding
268	chr8	128275206	128281918	+	0	NA	intron (NR_117099, intron 1 of 3)	intron (NR_117099, intron 1 of 3)	21680	NR_117099	103021164	Hs.571531	NR_117099		CASC21	CARLO2|CARLo-2|LINC01244	cancer susceptibility 21 (non-protein coding)	ncRNA
211	chr9	109621332	109624195	+	0	NA	Intergenic	CpG	-2615	NM_001347997	58499	Hs.370379	NM_021224	ENSG00000148143	ZNF462	Zfp462	zinc finger protein 462	protein-coding
597	chr7	99035164	99038217	+	0	NA	promoter-TSS (NM_001318162)	promoter-TSS (NM_001318162)	127	NM_001081559	10898	Hs.489287	NM_006693	ENSG00000160917	CPSF4	CPSF30|NAR|NEB-1|NEB1	cleavage and polyadenylation specific factor 4	protein-coding
859	chr1	212733112	212736235	+	0	NA	Intergenic	Intergenic	-4003	NM_001030287	467	Hs.460	NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
923	chr17	43246804	43252796	+	0	NA	promoter-TSS (NR_135646)	promoter-TSS (NR_135646)	-948	NR_135646	105371795	Hs.569733	NR_135646	ENSG00000267288	LOC105371795	-	uncharacterized LOC105371795	ncRNA
530	chr2	65023576	65025807	+	0	NA	Intergenic	Intergenic	66074	NR_110224	101927438	Hs.580313	NR_110224	ENSG00000234572	LINC01800	-	long intergenic non-protein coding RNA 1800	ncRNA
857	chr16	69102305	69108982	+	0	NA	intron (NM_024562, intron 17 of 17)	intron (NM_024562, intron 17 of 17)	-33824	NM_001199280	3038	Hs.592069	NM_005329	ENSG00000103044	HAS3	-	hyaluronan synthase 3	protein-coding
794	chr19	50378311	50383352	+	0	NA	promoter-TSS (NM_001098632)	promoter-TSS (NM_001098632)	149	NM_024682	79735	Hs.631587	NM_024682	ENSG00000104946	TBC1D17	-	TBC1 domain family member 17	protein-coding
901	chr12	56521463	56524653	+	0	NA	intron (NM_001184796, intron 1 of 30)	CpG	1072	NM_015292	23344	Hs.632729	NM_015292	ENSG00000139641	ESYT1	FAM62A|MBC2	extended synaptotagmin 1	protein-coding
216	chr7	99861326	99863576	+	0	NA	intron (NM_178831, intron 1 of 4)	intron (NM_178831, intron 1 of 4)	7404	NR_028039	352954	Hs.556063	NM_178831	ENSG00000239521	CASTOR3	GATS|STAG3OS	CASTOR family member 3	protein-coding
165	chr2	226943406	226946344	+	0	NA	Intergenic	Intergenic	-62635	NR_046102	646736	Hs.712836	NR_046102		LOC646736	-	uncharacterized LOC646736	ncRNA
796	chr9	132174172	132178224	+	0	NA	Intergenic	CpG	-74741	NR_038955	100506190	Hs.529860	NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
529	chr17	72731886	72735372	+	0	NA	intron (NM_001163990, intron 1 of 7)	intron (NM_001163990, intron 1 of 7)	273	NM_001163990	326624	Hs.351413	NM_175738	ENSG00000172794	RAB37	-	RAB37, member RAS oncogene family	protein-coding
498	chr7	79846864	79849403	+	0	NA	3' UTR (NM_002069, exon 8 of 8)	3' UTR (NM_002069, exon 8 of 8)	83062	NM_001256414	2770	Hs.134587	NM_002069	ENSG00000127955	GNAI1	Gi	G protein subunit alpha i1	protein-coding
785	chr9	37783807	37786241	+	0	NA	promoter-TSS (NM_016042)	promoter-TSS (NM_016042)	65	NM_016042	51010	Hs.602571	NM_016042	ENSG00000107371	EXOSC3	CGI-102|PCH1B|RRP40|Rrp40p|bA3J10.7|hRrp-40|p10	exosome component 3	protein-coding
992	chr15	40985689	40989539	+	0	NA	promoter-TSS (NR_040058)	promoter-TSS (NR_040058)	236	NM_001164269	5888	Hs.631709	NM_002875	ENSG00000051180	RAD51	BRCC5|FANCR|HRAD51|HsRad51|HsT16930|MRMV2|RAD51A|RECA	RAD51 recombinase	protein-coding
311	chr7	73183252	73185405	+	0	NA	exon (NM_001306, exon 1 of 1)	exon (NM_001306, exon 1 of 1)	272	NM_001306	1365	Hs.647023	NM_001306	ENSG00000165215	CLDN3	C7orf1|CPE-R2|CPETR2|HRVP1|RVP1	claudin 3	protein-coding
678	chr3	57101272	57104254	+	0	NA	intron (NM_181727, intron 1 of 1)	intron (NM_181727, intron 1 of 1)	8294	NM_181727	353324	Hs.129794	NM_181727	ENSG00000186451	SPATA12	SRG5	spermatogenesis associated 12	protein-coding
52	chr19	5902515	5904924	+	0	NA	exon (NM_175614, exon 1 of 4)	exon (NM_175614, exon 1 of 4)	305	NM_175614	126328	Hs.406062	NM_175614	ENSG00000174886	NDUFA11	B14.7|CI-B14.7	NADH:ubiquinone oxidoreductase subunit A11	protein-coding
710	chr3	123678581	123681043	+	0	NA	intron (NM_022757, intron 1 of 11)	CpG	443	NM_022757	64770	Hs.645028	NM_022757	ENSG00000175455	CCDC14	-	coiled-coil domain containing 14	protein-coding
23	chr17	57182229	57186202	+	0	NA	non-coding (NR_148346, exon 1 of 24)	non-coding (NR_148346, exon 1 of 24)	110	NR_148346	4591	Hs.579079	NM_015294	ENSG00000108395	TRIM37	MUL|POB1|TEF3	tripartite motif containing 37	protein-coding
30	chr19	14315420	14319174	+	0	NA	promoter-TSS (NM_014921)	promoter-TSS (NM_014921)	-300	NM_014921	22859	Hs.94229	NM_014921	ENSG00000072071	ADGRL1	CIRL1|CL1|LEC2|LPHN1	adhesion G protein-coupled receptor L1	protein-coding
711	chr7	92437765	92441242	+	0	NA	intron (NM_001259, intron 2 of 7)	intron (NM_001259, intron 2 of 7)	23761	NM_001259	1021	Hs.119882	NM_001259	ENSG00000105810	CDK6	MCPH12|PLSTIRE	cyclin dependent kinase 6	protein-coding
669	chr20	34041525	34044840	+	0	NA	promoter-TSS (NM_001319138)	promoter-TSS (NM_001319138)	-41	NM_007186	11190	Hs.443976	NM_007186	ENSG00000126001	CEP250	C-NAP1|CEP2|CNAP1	centrosomal protein 250	protein-coding
740	chr1	39656443	39660088	+	0	NA	intron (NM_012090, intron 1 of 92)	intron (NM_012090, intron 1 of 92)	108426	NM_012090	23499	Hs.472475	NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|MACF|OFC4	microtubule-actin crosslinking factor 1	protein-coding
277	chr10	104167356	104169952	+	0	NA	non-coding (NR_073110, exon 1 of 8)	non-coding (NR_073110, exon 1 of 8)	387	NR_073110	5662	Hs.154658	NM_002779	ENSG00000059915	PSD	EFA6|EFA6A|PSD1|TYL	pleckstrin and Sec7 domain containing	protein-coding
637	chr11	73470429	73472934	+	0	NA	promoter-TSS (NM_001243719)	promoter-TSS (NM_001243719)	520	NM_001243718	5870	Hs.503222	NM_002869	ENSG00000175582	RAB6A	RAB6	RAB6A, member RAS oncogene family	protein-coding
203	chr4	169067799	169077717	+	0	NA	intron (NM_007193, intron 3 of 11)	intron (NM_007193, intron 3 of 11)	59070	NM_007193	11199	Hs.188401	NM_007193	ENSG00000109511	ANXA10	ANX14	annexin A10	protein-coding
175	chr7	100099679	100102578	+	0	NA	Intergenic	AluSx3|SINE|Alu	19578	NM_173564	222950	Hs.320086	NM_173564	ENSG00000166924	NYAP1	C7orf51	neuronal tyrosine phosphorylated phosphoinositide-3-kinase adaptor 1	protein-coding
533	chr19	18389011	18394615	+	0	NA	exon (NM_001286968, exon 1 of 1)	exon (NM_001286968, exon 1 of 1)	653	NM_001286968	3727	Hs.2780	NM_005354	ENSG00000130522	JUND	AP-1	JunD proto-oncogene, AP-1 transcription factor subunit	protein-coding
340	chr17	617236	619548	+	0	NA	promoter-TSS (NM_018289)	promoter-TSS (NM_018289)	-296	NM_001128159	55275	Hs.461819	NM_018289	ENSG00000141252	VPS53	HCCS1|PCH2E|hVps53L|pp13624	VPS53, GARP complex subunit	protein-coding
694	chr17	62644574	62647816	+	0	NA	intron (NM_022739, intron 1 of 18)	intron (NM_022739, intron 1 of 18)	12191	NM_022739	64750	Hs.515011	NM_022739	ENSG00000108854	SMURF2	-	SMAD specific E3 ubiquitin protein ligase 2	protein-coding
240	chr20	34635762	34640094	+	0	NA	non-coding (NR_027451, exon 1 of 1)	non-coding (NR_027451, exon 1 of 1)	954	NR_027451	647979	Hs.743232	NR_027451	ENSG00000260032	NORAD	LINC00657	non-coding RNA activated by DNA damage	ncRNA
376	chr12	75881540	75886099	+	0	NA	intron (NM_006851, intron 2 of 5)	L2a|LINE|L2	9306	NM_006851	11010	Hs.205558	NM_006851	ENSG00000139278	GLIPR1	CRISP7|GLIPR|RTVP1	GLI pathogenesis related 1	protein-coding
32	chr13	95951511	95955401	+	0	NA	intron (NM_001301829, intron 1 of 29)	CpG	244	NM_005845	10257	Hs.508423	NM_005845	ENSG00000125257	ABCC4	MOAT-B|MOATB|MRP4	ATP binding cassette subfamily C member 4	protein-coding
755	chr11	118963180	118967770	+	0	NA	3' UTR (NM_002105, exon 1 of 1)	3' UTR (NM_002105, exon 1 of 1)	702	NM_002105	3014	Hs.477879	NM_002105	ENSG00000188486	H2AFX	H2A.X|H2A/X|H2AX	H2A histone family member X	protein-coding
119	chr19	7098173	7100608	+	0	NA	Intergenic	CpG	29919	NM_001044387	79230	Hs.591380	NM_024341	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
421	chr7	75918778	75925856	+	0	NA	Intergenic	AluSx|SINE|Alu	-9558	NM_001540	3315	Hs.520973	NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
430	chr17	79493433	79495589	+	0	NA	promoter-TSS (NM_012418)	promoter-TSS (NM_012418)	-906	NM_012418	25794	Hs.118555	NM_012418	ENSG00000186765	FSCN2	RFSN|RP30	fascin actin-bundling protein 2, retinal	protein-coding
4	chr14	24700062	24703494	+	0	NA	promoter-TSS (NM_001199823)	promoter-TSS (NM_001199823)	150	NM_001351024	51292	Hs.368855	NM_016576	ENSG00000100938	GMPR2	GMPR 2	guanosine monophosphate reductase 2	protein-coding
145	chr5	179188917	179191611	+	0	NA	intron (NM_014757, intron 1 of 4)	intron (NM_014757, intron 1 of 4)	30413	NM_014757	9794	Hs.631951	NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind like transcriptional coactivator 1	protein-coding
372	chr7	99844014	99845994	+	0	NA	intron (NM_178831, intron 1 of 4)	intron (NM_178831, intron 1 of 4)	24851	NR_028039	352954	Hs.556063	NM_178831	ENSG00000239521	CASTOR3	GATS|STAG3OS	CASTOR family member 3	protein-coding
839	chr6	56775068	56778352	+	0	NA	intron (NM_001144769, intron 2 of 96)	LTR78|LTR|ERV1	42716	NM_001144769	667	Hs.604915	NM_001723	ENSG00000151914	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2	dystonin	protein-coding
767	chr16	69344678	69346578	+	0	NA	intron (NM_013245, intron 1 of 10)	CpG	341	NM_013245	27183	Hs.128420	NM_013245	ENSG00000132612	VPS4A	SKD1|SKD1A|SKD2|VPS4|VPS4-1	vacuolar protein sorting 4 homolog A	protein-coding
915	chr9	36583837	36586921	+	0	NA	intron (NM_001256687, intron 3 of 16)	AluSz|SINE|Alu	12520	NM_001256688	9833	Hs.184339	NM_014791	ENSG00000165304	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
782	chr15	40855959	40858652	+	0	NA	promoter-TSS (NM_052849)	promoter-TSS (NM_052849)	-49	NM_001080792	90416	Hs.654661	NM_052849	ENSG00000128891	CCDC32	C15orf57	coiled-coil domain containing 32	protein-coding
359	chr11	118886070	118891193	+	0	NA	promoter-TSS (NM_016146)	promoter-TSS (NM_016146)	426	NM_001028	6230	Hs.512676	NM_001028	ENSG00000118181	RPS25	S25	ribosomal protein S25	protein-coding
686	chr6	83582833	83587324	+	0	NA	Intergenic	MLT2A1|LTR|ERVL	190482	NM_001350603	90025	Hs.148609	NM_198920	ENSG00000118420	UBE3D	C6orf157|H10BH|UBE2CBP|YJR141W	ubiquitin protein ligase E3D	protein-coding
993	chr20	50381970	50386150	+	0	NA	intron (NM_006045, intron 1 of 27)	CpG	890	NM_006045	10079	Hs.649234	NM_006045	ENSG00000054793	ATP9A	ATPIIA	ATPase phospholipid transporting 9A (putative)	protein-coding
74	chr7	99612171	99614908	+	0	NA	intron (NM_001287055, intron 1 of 3)	CpG	364	NM_001346579	7586	Hs.615360	NM_003439	ENSG00000106261	ZKSCAN1	KOX18|PHZ-37|ZNF139|ZNF36|ZSCAN33	zinc finger with KRAB and SCAN domains 1	protein-coding
544	chr16	30581372	30584465	+	0	NA	exon (NM_145271, exon 1 of 3)	exon (NM_145271, exon 1 of 3)	810	NM_145271	146542	Hs.301463	NM_145271	ENSG00000229809	ZNF688	-	zinc finger protein 688	protein-coding
225	chr12	76048243	76063851	+	0	NA	Intergenic	L3|LINE|CR1	-150629	NM_007043	11103	Hs.645517	NM_007043	ENSG00000111615	KRR1	HRB2|RIP-1	KRR1, small subunit processome component homolog	protein-coding
599	chr10	71928841	71932669	+	0	NA	promoter-TSS (NM_020150)	promoter-TSS (NM_020150)	-470	NM_020150	56681	Hs.499960	NM_020150	ENSG00000079332	SAR1A	SAR1|SARA1|Sara|masra2	secretion associated Ras related GTPase 1A	protein-coding
314	chr17	76120273	76130062	+	0	NA	promoter-TSS (NM_001321185)	promoter-TSS (NM_001321185)	-292	NM_001321185	11322	Hs.632227	NM_007267	ENSG00000141524	TMC6	EV1|EVER1|EVIN1|LAK-4P	transmembrane channel like 6	protein-coding
741	chr14	54464781	54468713	+	0	NA	Intergenic	Intergenic	-43138	NM_001347912	652	Hs.68879	NM_001202	ENSG00000125378	BMP4	BMP2B|BMP2B1|MCOPS6|OFC11|ZYME	bone morphogenetic protein 4	protein-coding
121	chr5	139026804	139033084	+	0	NA	promoter-TSS (NR_149086)	promoter-TSS (NR_149086)	-630	NM_001317205	51523	Hs.189119	NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
348	chr2	224559619	224567585	+	0	NA	Intergenic	Intergenic	-96385	NM_003469	7857	Hs.516726	NM_003469	ENSG00000171951	SCG2	CHGC|EM66|SN|SgII	secretogranin II	protein-coding
730	chr9	33262606	33265416	+	0	NA	promoter-TSS (NM_016410)	promoter-TSS (NM_016410)	748	NM_004323	573	Hs.377484	NM_004323	ENSG00000107262	BAG1	BAG-1|HAP|RAP46	BCL2 associated athanogene 1	protein-coding
339	chr14	24563001	24565510	+	0	NA	promoter-TSS (NM_001354769)	promoter-TSS (NM_001354769)	84	NM_001354769	4901	Hs.652297	NM_006177	ENSG00000129535	NRL	D14S46E|NRL-MAF|RP27	neural retina leucine zipper	protein-coding
281	chr8	33327889	33332348	+	0	NA	intron (NM_032664, intron 1 of 4)	intron (NM_032664, intron 1 of 4)	546	NM_032664	84750	Hs.458713	NM_032664	ENSG00000172728	FUT10	FUCTX	fucosyltransferase 10	protein-coding
68	chr1	154191467	154195539	+	0	NA	promoter-TSS (NM_001297721)	promoter-TSS (NM_001297721)	178	NM_001330730	9898	Hs.490551	NM_014847	ENSG00000143569	UBAP2L	NICE-4|NICE4	ubiquitin associated protein 2 like	protein-coding
657	chr1	29046492	29049569	+	0	NA	Intergenic	AluY|SINE|Alu	-15103	NM_001173128	51441	Hs.532286	NM_016258	ENSG00000198492	YTHDF2	CAHL|HGRG8|NY-REN-2	YTH N6-methyladenosine RNA binding protein 2	protein-coding
954	chr11	67209322	67212469	+	0	NA	promoter-TSS (NM_020441)	promoter-TSS (NM_020441)	88	NM_020441	57175	Hs.6191	NM_020441	ENSG00000172725	CORO1B	CORONIN-2	coronin 1B	protein-coding
101	chr12	66156439	66161498	+	0	NA	intron (NR_026825, intron 1 of 1)	intron (NR_026825, intron 1 of 1)	-59272	NM_003483	8091	Hs.505924	NM_003483	ENSG00000149948	HMGA2	BABL|HMGI-C|HMGIC|LIPO|STQTL9	high mobility group AT-hook 2	protein-coding
703	chr20	48306781	48309467	+	0	NA	intron (NM_004776, intron 1 of 8)	intron (NM_004776, intron 1 of 8)	22297	NM_004776	9334	Hs.370487	NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
258	chr16	19403457	19406989	+	0	NA	Intergenic	LTR14C|LTR|ERVK	-16638	NM_001308161	79838	Hs.115838	NM_024780	ENSG00000103534	TMC5	-	transmembrane channel like 5	protein-coding
196	chr4	169104458	169106081	+	0	NA	intron (NM_007193, intron 10 of 11)	intron (NM_007193, intron 10 of 11)	91581	NM_007193	11199	Hs.188401	NM_007193	ENSG00000109511	ANXA10	ANX14	annexin A10	protein-coding
716	chr12	112543652	112552460	+	0	NA	Intergenic	PABL_A|LTR|ERV1	-1421	NM_024953	80018	Hs.530941	NM_024953	ENSG00000111300	NAA25	C12orf30|MDM20|NAP1	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding
708	chr1	33206142	33209768	+	0	NA	intron (NM_020888, intron 1 of 6)	intron (NM_020888, intron 1 of 6)	443	NM_020888	57648	Hs.591502	NM_020888	ENSG00000162522	KIAA1522	-	KIAA1522	protein-coding
818	chr13	100630867	100637043	+	0	NA	promoter-TSS (NM_007129)	promoter-TSS (NM_007129)	-55	NM_007129	7546	Hs.653700	NM_007129	ENSG00000043355	ZIC2	HPE5	Zic family member 2	protein-coding
926	chr2	28490187	28493581	+	0	NA	intron (NR_137439, intron 10 of 13)	intron (NR_137439, intron 10 of 13)	41442	NR_038319	100505716	Hs.679092	NR_038319	ENSG00000223522	LOC100505716	-	uncharacterized LOC100505716	ncRNA
303	chr17	42904454	42911032	+	0	NA	promoter-TSS (NM_005497)	promoter-TSS (NM_005497)	-136	NM_005497	10052	Hs.712052	NM_005497	ENSG00000182963	GJC1	CX45|GJA7	gap junction protein gamma 1	protein-coding
392	chr2	32371	35125	+	0	NA	Intergenic	Intergenic	12840	NM_001077710	642273	Hs.8379	NM_001077710	ENSG00000184731	FAM110C	-	family with sequence similarity 110 member C	protein-coding
481	chr12	65819242	65833127	+	0	NA	intron (NM_001031679, intron 5 of 6)	intron (NM_001031679, intron 5 of 6)	124907	NR_135033	105369187	Hs.738044	NR_135033	ENSG00000250748	LOC105369187	-	uncharacterized LOC105369187	ncRNA
671	chr13	73354415	73356679	+	0	NA	promoter-TSS (NR_146206)	promoter-TSS (NR_146206)	-614	NM_001349655	10464	Hs.441926	NM_006346	ENSG00000083535	PIBF1	C13orf24|CEP90|JBTS33|PIBF	progesterone immunomodulatory binding factor 1	protein-coding
641	chr22	42015019	42019144	+	0	NA	promoter-TSS (NM_001469)	promoter-TSS (NM_001469)	-20	NM_015704	27351	Hs.570455	NM_015704	ENSG00000100418	DESI1	D15Wsu75e|DESI2|DJ347H13.4|DeSI-1|FAM152B|PPPDE2	desumoylating isopeptidase 1	protein-coding
466	chr1	43990906	43993153	+	0	NA	intron (NM_001329137, intron 1 of 34)	AluJb|SINE|Alu	321	NM_001329138	5792	Hs.272062	NM_002840	ENSG00000142949	PTPRF	BNAH2|LAR	protein tyrosine phosphatase, receptor type F	protein-coding
316	chr8	126706904	126715776	+	0	NA	Intergenic	L2c|LINE|L2	252101	NR_038447	100130231	Hs.729642	NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
405	chr12	57822993	57826020	+	0	NA	5' UTR (NM_014925, exon 1 of 24)	5' UTR (NM_014925, exon 1 of 24)	281	NM_001351218	22864	Hs.443673	NM_014925	ENSG00000179912	R3HDM2	CAG6|PR01365	R3H domain containing 2	protein-coding
734	chr14	53160454	53164043	+	0	NA	5' UTR (NM_014584, exon 1 of 16)	5' UTR (NM_014584, exon 1 of 16)	401	NM_014584	30001	Hs.525339	NM_014584	ENSG00000197930	ERO1A	ERO1-L|ERO1-L-alpha|ERO1-alpha|ERO1L|ERO1LA|Ero1alpha	endoplasmic reticulum oxidoreductase 1 alpha	protein-coding
770	chr19	49457042	49459633	+	0	NA	intron (NM_001291430, intron 1 of 2)	CpG	220	NM_001291428	581	Hs.624291	NM_004324	ENSG00000087088	BAX	BCL2L4	BCL2 associated X, apoptosis regulator	protein-coding
575	chr19	17416023	17424120	+	0	NA	promoter-TSS (NM_024050)	promoter-TSS (NM_024050)	-266	NM_024050	79016	Hs.466154	NM_024050	ENSG00000130311	DDA1	C19orf58|PCIA1	DET1 and DDB1 associated 1	protein-coding
50	chr2	20645476	20649279	+	0	NA	exon (NM_004040, exon 1 of 1)	exon (NM_004040, exon 1 of 1)	545	NM_004040	388	Hs.502876	NM_004040	ENSG00000143878	RHOB	ARH6|ARHB|MST081|MSTP081|RHOH6	ras homolog family member B	protein-coding
411	chr19	44098397	44102485	+	0	NA	promoter-TSS (NM_024327)	promoter-TSS (NM_024327)	-103	NM_024327	79177	Hs.11110	NM_024327	ENSG00000124444	ZNF576	-	zinc finger protein 576	protein-coding
377	chr16	283737	286399	+	0	NA	intron (NM_001284497, intron 1 of 12)	CpG	523	NM_032039	83986	Hs.513225	NM_032039	ENSG00000167930	FAM234A	C16orf9|ITFG3|gs19	family with sequence similarity 234 member A	protein-coding
472	chr6	26154185	26161386	+	0	NA	promoter-TSS (NM_138720)	promoter-TSS (NM_138720)	-564	NM_021063	3017	Hs.591797	NM_021063	ENSG00000158373	HIST1H2BD	H2B.1B|H2B/b|H2BFB|HIRIP2|dJ221C16.6	histone cluster 1 H2B family member d	protein-coding
338	chr9	132499435	132501189	+	0	NA	TTS (NM_004878)	TTS (NM_004878)	15032	NM_004878	9536	Hs.146688	NM_004878	ENSG00000148344	PTGES	MGST-IV|MGST1-L1|MGST1L1|MPGES|PGES|PIG12|PP102|PP1294|TP53I12|mPGES-1	prostaglandin E synthase	protein-coding
557	chr13	73907919	73910857	+	0	NA	Intergenic	Intergenic	-228993	NR_047009	100874155	Hs.672679	NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
622	chr11	65318089	65319979	+	0	NA	exon (NM_001164266, exon 9 of 27)	exon (NM_001164266, exon 9 of 27)	6665	NM_021070	4054	Hs.289019	NM_021070	ENSG00000168056	LTBP3	DASS|GPHYSD3|LTBP-3|LTBP2|STHAG6|pp6425	latent transforming growth factor beta binding protein 3	protein-coding
863	chr15	52153918	52162934	+	0	NA	intron (NM_014547, intron 2 of 9)	AluJr4|SINE|Alu	36601	NM_014547	29766	Hs.4998	NM_014547	ENSG00000138594	TMOD3	UTMOD	tropomodulin 3	protein-coding
522	chr3	139015464	139040952	+	0	NA	Intergenic	Intergenic	-34653	NM_020191	56945	Hs.745001	NM_020191	ENSG00000175110	MRPS22	C3orf5|COXPD5|GIBT|GK002|MRP-S22|RPMS22	mitochondrial ribosomal protein S22	protein-coding
294	chr15	73924887	73927961	+	0	NA	promoter-TSS (NM_017455)	promoter-TSS (NM_017455)	-671	NM_017455	27020	Hs.744867	NM_012428	ENSG00000156642	NPTN	GP55|GP65|SDFR1|SDR1|np55|np65	neuroplastin	protein-coding
585	chr17	40759775	40762885	+	0	NA	promoter-TSS (NM_001070)	promoter-TSS (NM_001070)	-28	NM_001070	7283	Hs.279669	NM_001070	ENSG00000131462	TUBG1	CDCBM4|GCP-1|TUBG|TUBGCP1	tubulin gamma 1	protein-coding
808	chr12	56074421	56076824	+	0	NA	exon (NM_152637, exon 1 of 2)	exon (NM_152637, exon 1 of 2)	292	NM_152637	196410	Hs.51483	NM_152637	ENSG00000170439	METTL7B	ALDI	methyltransferase like 7B	protein-coding
494	chr3	32267032	32269965	+	0	NA	Intergenic	MIR|SINE|MIR	-11673	NM_178868	152189	Hs.154986	NM_178868	ENSG00000170293	CMTM8	CKLFSF8|CKLFSF8-V2	CKLF like MARVEL transmembrane domain containing 8	protein-coding
464	chr2	85151203	85154993	+	0	NA	Intergenic	MER91C|DNA|hAT-Tip100	20335	NM_021103	9168	Hs.446574	NM_021103	ENSG00000034510	TMSB10	MIG12|TB10	thymosin beta 10	protein-coding
438	chr16	68677479	68681311	+	0	NA	intron (NM_001317196, intron 1 of 14)	CpG	656	NM_001317196	1001	Hs.191842	NM_001793	ENSG00000062038	CDH3	CDHP|HJMD|PCAD	cadherin 3	protein-coding
966	chr6	36992067	36994200	+	0	NA	intron (NM_173558, intron 13 of 15)	intron (NM_173558, intron 13 of 15)	19710	NM_173558	221472	Hs.509664	NM_173558	ENSG00000146192	FGD2	ZFYVE4	FYVE, RhoGEF and PH domain containing 2	protein-coding
762	chr3	65922221	65927699	+	0	NA	intron (NR_145422, intron 1 of 2)	intron (NR_145422, intron 1 of 2)	15273	NR_145422	151877	Hs.476636	NR_145422	ENSG00000272610	MAGI1-IT1	-	MAGI1 intronic transcript 1	ncRNA
644	chr7	139350122	139353729	+	0	NA	intron (NM_001113239, intron 2 of 14)	L1ME4a|LINE|L1	125768	NM_001113239	28996	Hs.731417	NM_022740	ENSG00000064393	HIPK2	PRO0593	homeodomain interacting protein kinase 2	protein-coding
665	chr22	45557484	45561364	+	0	NA	promoter-TSS (NM_007172)	promoter-TSS (NM_007172)	238	NR_038956	100506714	Hs.189902	NR_038956		NUP50-DT	NUP50-AS1	NUP50 divergent transcript	ncRNA
62	chr20	52257826	52260884	+	0	NA	Intergenic	Intergenic	34462	NR_134576	105372672	Hs.259350	NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
604	chr20	61362674	61377791	+	0	NA	intron (NM_002531, intron 1 of 3)	MIR3|SINE|MIR	30043	NM_002531	4923	Hs.590869	NM_002531	ENSG00000101188	NTSR1	NTR	neurotensin receptor 1	protein-coding
601	chr3	50281524	50287165	+	0	NA	promoter-TSS (NM_001166425)	promoter-TSS (NM_001166425)	18	NM_001166425	2771	Hs.77269	NM_002070	ENSG00000114353	GNAI2	GIP|GNAI2B|H_LUCA15.1|H_LUCA16.1	G protein subunit alpha i2	protein-coding
317	chr14	68551276	68557973	+	0	NA	intron (NM_002877, intron 7 of 10)	(TATAA)n|Simple_repeat|Simple_repeat	264315	NM_001321815	5890	Hs.172587	NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
717	chr16	2316074	2319576	+	0	NA	promoter-TSS (NM_001286625)	promoter-TSS (NM_001286625)	62	NM_006711	10921	Hs.355643	NM_006711	ENSG00000205937	RNPS1	E5.1	RNA binding protein with serine rich domain 1	protein-coding
855	chr2	62689002	62693257	+	0	NA	Intergenic	LTR1D|LTR|ERV1	42475	NM_198276	200728	Hs.308028	NM_198276	ENSG00000186889	TMEM17	-	transmembrane protein 17	protein-coding
813	chr17	39956135	39958591	+	0	NA	TTS (NM_006455)	TTS (NM_006455)	11088	NM_006455	10609	Hs.446459	NM_006455	ENSG00000141696	P3H4	LEPREL4|NO55|NOL55|SC65	prolyl 3-hydroxylase family member 4 (non-enzymatic)	protein-coding
227	chr10	6320476	6323730	+	0	NA	Intergenic	L2c|LINE|L2	-46404	NR_040079	399715		NR_040079	ENSG00000215244	LOC399715	-	uncharacterized LOC399715	ncRNA
714	chr7	73152000	73158973	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-2289	NM_148913	83451	Hs.647045	NM_148912	ENSG00000106077	ABHD11	PP1226|WBSCR21	abhydrolase domain containing 11	protein-coding
862	chr19	12273257	12274867	+	0	NA	intron (NM_001348013, intron 1 of 2)	CpG	200	NM_001348013	7695	Hs.479874	NM_003437	ENSG00000196646	ZNF136	pHZ-20	zinc finger protein 136	protein-coding
983	chr14	23386857	23390493	+	0	NA	promoter-TSS (NR_120599)	promoter-TSS (NR_120599)	10	NR_120600	100505758	Hs.655707	NR_120599	ENSG00000237054	PRMT5-AS1	-	PRMT5 antisense RNA 1	ncRNA
958	chr19	47774716	47778627	+	0	NA	promoter-TSS (NR_037675)	promoter-TSS (NR_037675)	-988	NR_037675	255783	Hs.128690	NM_178511	ENSG00000257704	INAFM1	PRR24	InaF motif containing 1	protein-coding
460	chr1	27674839	27676575	+	0	NA	intron (NM_001193308, intron 6 of 14)	intron (NM_001193308, intron 6 of 14)	7224	NM_032872	84958	Hs.469175	NM_032872	ENSG00000142765	SYTL1	JFC1|SLP1	synaptotagmin like 1	protein-coding
347	chr4	10655631	10660174	+	0	NA	intron (NM_052964, intron 2 of 18)	L1ME3E|LINE|L1	28587	NM_052964	116449	Hs.62772	NM_052964	ENSG00000109684	CLNK	MIST	cytokine dependent hematopoietic cell linker	protein-coding
674	chr1	164612055	164615607	+	0	NA	intron (NM_001353131, intron 2 of 7)	intron (NM_001353131, intron 2 of 7)	84872	NM_001353130	5087	Hs.557097	NM_002585	ENSG00000185630	PBX1	CAKUHED	PBX homeobox 1	protein-coding
418	chr19	11638804	11642080	+	0	NA	promoter-TSS (NM_001142465)	promoter-TSS (NM_001142465)	-455	NM_001142464	51295	Hs.515146	NM_016581	ENSG00000130159	ECSIT	SITPEC	ECSIT signalling integrator	protein-coding
506	chr6	133418267	133424821	+	0	NA	intron (NR_026969, intron 3 of 3)	L1M5|LINE|L1	12325	NR_026969	285735	Hs.407549	NM_001037231		LINC00326	NCRNA00326	long intergenic non-protein coding RNA 326	ncRNA
230	chr14	68437144	68440448	+	0	NA	intron (NM_002877, intron 7 of 10)	intron (NM_002877, intron 7 of 10)	148487	NM_001321815	5890	Hs.172587	NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
593	chr19	2944330	2946173	+	0	NA	promoter-TSS (NM_021217)	promoter-TSS (NM_021217)	-282	NM_021217	58492	Hs.38004	NM_021217	ENSG00000175691	ZNF77	pT1	zinc finger protein 77	protein-coding
334	chr10	30001892	30005038	+	0	NA	intron (NM_001323599, intron 1 of 38)	intron (NM_001323599, intron 1 of 38)	21265	NM_003174	6840	Hs.499209	NM_003174	ENSG00000197321	SVIL	-	supervillin	protein-coding
391	chr6	107434422	107438738	+	0	NA	promoter-TSS (NM_001080450)	promoter-TSS (NM_001080450)	-944	NM_001080450	57673	Hs.418045	NM_001080450	ENSG00000178409	BEND3	KIAA1553	BEN domain containing 3	protein-coding
152	chr1	21022168	21026626	+	0	NA	intron (NM_001287212, intron 6 of 14)	intron (NM_001287212, intron 6 of 14)	20113	NM_001287212	57576	Hs.130411	NM_020816	ENSG00000117245	KIF17	KIF17B|KIF3X|KLP-2|OSM-3	kinesin family member 17	protein-coding
105	chr19	9184807	9187615	+	0	NA	Intergenic	Intergenic	-17710	NM_001004456	125963	Hs.553577	NM_001004456	ENSG00000170929	OR1M1	OR19-5|OR19-6	olfactory receptor family 1 subfamily M member 1	protein-coding
428	chr16	1346095	1348545	+	0	NA	Intergenic	AluSx1|SINE|Alu	-11834	NM_194261	7329	Hs.302903	NM_003345	ENSG00000103275	UBE2I	C358B7.1|P18|UBC9	ubiquitin conjugating enzyme E2 I	protein-coding
688	chr15	90435534	90438634	+	0	NA	intron (NM_001199058, intron 5 of 9)	CpG	533	NR_023361	10239	Hs.632161	NM_005829	ENSG00000157823	AP3S2	AP3S3|sigma3b	adaptor related protein complex 3 subunit sigma 2	protein-coding
290	chr2	65062693	65068854	+	0	NA	Intergenic	Intergenic	24992	NR_110224	101927438	Hs.580313	NR_110224	ENSG00000234572	LINC01800	-	long intergenic non-protein coding RNA 1800	ncRNA
948	chr17	983551	986583	+	0	NA	intron (NM_021962, intron 5 of 22)	AluSx|SINE|Alu	-2681	NM_001282149	29	Hs.159306	NM_001092	ENSG00000159842	ABR	MDB	ABR, RhoGEF and GTPase activating protein	protein-coding
809	chr17	38655531	38657983	+	0	NA	intron (NM_032865, intron 1 of 12)	intron (NM_032865, intron 1 of 12)	1097	NM_032865	84951	Hs.438292	NM_032865	ENSG00000131746	TNS4	CTEN|PP14434	tensin 4	protein-coding
910	chr4	148650417	148655996	+	0	NA	promoter-TSS (NM_024605)	promoter-TSS (NM_024605)	-247	NM_024605	79658	Hs.368631	NM_024605	ENSG00000071205	ARHGAP10	GRAF2|PS-GAP|PSGAP	Rho GTPase activating protein 10	protein-coding
80	chrX	45599324	45643911	+	0	NA	Intergenic	Intergenic	-15087	NR_029636	407007		NR_029636	ENSG00000207725	MIR222	MIRN222|miRNA222|mir-222	microRNA 222	ncRNA
34	chr17	63778143	63782789	+	0	NA	intron (NM_001353129, intron 21 of 26)	intron (NM_001353129, intron 21 of 26)	42195	NM_001037325	201134	Hs.408676	NM_145036	ENSG00000154240	CEP112	CCDC46|MACOCO	centrosomal protein 112	protein-coding
797	chr11	70048026	70051376	+	0	NA	exon (NM_003824, exon 1 of 2)	exon (NM_003824, exon 1 of 2)	432	NM_003824	8772	Hs.86131	NM_003824	ENSG00000168040	FADD	GIG3|MORT1	Fas associated via death domain	protein-coding
947	chr5	92411448	92417408	+	0	NA	Intergenic	Intergenic	492621	NR_109825	441094	Hs.457407	NR_015369	ENSG00000237187	NR2F1-AS1	-	NR2F1 antisense RNA 1	ncRNA
320	chr12	76077764	76080087	+	0	NA	Intergenic	Intergenic	-173507	NM_007043	11103	Hs.645517	NM_007043	ENSG00000111615	KRR1	HRB2|RIP-1	KRR1, small subunit processome component homolog	protein-coding
894	chr1	8213051	8217741	+	0	NA	Intergenic	Intergenic	-53336	NR_125998	102724539	Hs.516816	NR_125998	ENSG00000227634	LINC01714	-	long intergenic non-protein coding RNA 1714	ncRNA
526	chr16	66555045	66557507	+	0	NA	intron (NM_001172644, intron 5 of 8)	intron (NM_001172644, intron 5 of 8)	27452	NM_001272050	7084	Hs.512619	NM_004614	ENSG00000166548	TK2	MTDPS2|MTTK|PEOB3|SCA31	thymidine kinase 2, mitochondrial	protein-coding
759	chr7	27778367	27781381	+	0	NA	5' UTR (NM_006024, exon 1 of 17)	5' UTR (NM_006024, exon 1 of 17)	160	NM_001206902	8887	Hs.34576	NM_006024	ENSG00000106052	TAX1BP1	CALCOCO3|T6BP|TXBP151	Tax1 binding protein 1	protein-coding
114	chr11	61809753	61816088	+	0	NA	Intergenic	MER4E|LTR|ERV1	-77788	NM_002032	2495	Hs.524910	NM_002032	ENSG00000167996	FTH1	FHC|FTH|FTHL6|HFE5|PIG15|PLIF	ferritin heavy chain 1	protein-coding
684	chr8	22101074	22104172	+	0	NA	promoter-TSS (NR_029714)	promoter-TSS (NR_029714)	4	NM_001722	661	Hs.148342	NM_001722	ENSG00000168495	POLR3D	BN51T|RPC4|RPC53|TSBN51	RNA polymerase III subunit D	protein-coding
486	chr12	56861310	56864171	+	0	NA	intron (NM_207344, intron 1 of 1)	intron (NM_207344, intron 1 of 1)	439	NM_207344	283377	Hs.128676	NM_207344	ENSG00000176422	SPRYD4	-	SPRY domain containing 4	protein-coding
549	chr9	131444565	131449412	+	0	NA	promoter-TSS (NM_001248000)	promoter-TSS (NM_001248000)	-377	NM_001248000	6418	Hs.436687	NM_003011	ENSG00000119335	SET	2PP2A|I2PP2A|IGAAD|IPP2A2|PHAPII|TAF-I|TAF-IBETA	SET nuclear proto-oncogene	protein-coding
551	chr1	39648730	39651323	+	0	NA	intron (NM_012090, intron 1 of 92)	intron (NM_012090, intron 1 of 92)	100187	NM_012090	23499	Hs.472475	NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|MACF|OFC4	microtubule-actin crosslinking factor 1	protein-coding
850	chr1	197113621	197117416	+	0	NA	exon (NM_018136, exon 1 of 28)	exon (NM_018136, exon 1 of 28)	306	NM_001206846	259266	Hs.121028	NM_018136	ENSG00000066279	ASPM	ASP|Calmbp1|MCPH5	abnormal spindle microtubule assembly	protein-coding
437	chr16	69090975	69092484	+	0	NA	intron (NM_024562, intron 17 of 17)	intron (NM_024562, intron 17 of 17)	-47738	NM_001199280	3038	Hs.592069	NM_005329	ENSG00000103044	HAS3	-	hyaluronan synthase 3	protein-coding
474	chr10	126478700	126481858	+	0	NA	intron (NM_212554, intron 1 of 6)	CpG	231	NM_212554	399818	Hs.720819	NM_212554	ENSG00000203791	EEF1AKMT2	C10orf138|Efm4|METTL10	EEF1A lysine methyltransferase 2	protein-coding
737	chr15	66788580	66792311	+	0	NA	promoter-TSS (NM_006049)	promoter-TSS (NM_006049)	-292	NM_001329614	10302	Hs.30174	NM_006049	ENSG00000174446	SNAPC5	SNAP19	small nuclear RNA activating complex polypeptide 5	protein-coding
590	chr13	106795627	106799821	+	0	NA	Intergenic	LTR78|LTR|ERV1	-231187	NR_034119	728192	Hs.559194	NR_034119		LINC00460	-	long intergenic non-protein coding RNA 460	ncRNA
456	chr8	128215200	128246791	+	0	NA	intron (NR_108049, intron 1 of 1)	intron (NR_108049, intron 1 of 1)	518	NR_108049	100507056	Hs.343864	NR_108049		CCAT1	CARLO5|CARLo-5|onco-lncRNA-40	colon cancer associated transcript 1 (non-protein coding)	ncRNA
103	chr8	89950758	89953999	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-612661	NM_005941	4325	Hs.492187	NM_005941	ENSG00000156103	MMP16	C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP	matrix metallopeptidase 16	protein-coding
861	chr1	85762526	85766007	+	0	NA	Intergenic	Intergenic	-21679	NM_003921	8915	Hs.193516	NM_003921	ENSG00000142867	BCL10	CARMEN|CIPER|CLAP|IMD37|c-E10|mE10	B cell CLL/lymphoma 10	protein-coding
2	chr16	3148983	3151759	+	0	NA	Intergenic	Intergenic	-1053	NM_001282416	84891	Hs.334515	NM_032805	ENSG00000130182	ZSCAN10	ZNF206	zinc finger and SCAN domain containing 10	protein-coding
817	chr4	75541718	75568785	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	74660	NM_001657	374	Hs.270833	NM_001657	ENSG00000109321	AREG	AR|AREGB|CRDGF|SDGF	amphiregulin	protein-coding
892	chr19	1407072	1409665	+	0	NA	intron (NM_170711, intron 1 of 12)	CpG	800	NM_170711	26528	Hs.222510	NM_018959	ENSG00000071626	DAZAP1	-	DAZ associated protein 1	protein-coding
612	chr3	9403626	9406392	+	0	NA	5' UTR (NM_015453, exon 1 of 10)	5' UTR (NM_015453, exon 1 of 10)	292	NM_015453	25917	Hs.443081	NM_015453	ENSG00000134077	THUMPD3	-	THUMP domain containing 3	protein-coding
414	chr2	227699865	227702252	+	0	NA	intron (NM_001349071, intron 1 of 6)	CpG	427	NM_001167608	84236	Hs.471514	NM_032276	ENSG00000144468	RHBDD1	RHBDL4|RRP4	rhomboid domain containing 1	protein-coding
312	chr4	30900276	30908420	+	0	NA	intron (NM_001173523, intron 1 of 2)	intron (NM_001173523, intron 1 of 2)	182311	NM_002589	5099	Hs.479439	NM_002589	ENSG00000169851	PCDH7	BH-Pcdh|BHPCDH|PPP1R120	protocadherin 7	protein-coding
289	chr14	77418825	77430147	+	0	NA	Intergenic	AluJr|SINE|Alu	-1495	NR_133913	105370578	Hs.574184	NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
394	chr19	2149493	2152317	+	0	NA	intron (NM_001261826, intron 1 of 31)	intron (NM_001261826, intron 1 of 31)	720	NM_001261826	8943	Hs.512815	NM_003938	ENSG00000065000	AP3D1	ADTD|HPS10|hBLVR	adaptor related protein complex 3 subunit delta 1	protein-coding
810	chr2	235110735	235113479	+	0	NA	Intergenic	Intergenic	152761	NM_006944	6694	Hs.444488	NM_006944	ENSG00000072080	SPP2	SPP-24|SPP24	secreted phosphoprotein 2	protein-coding
223	chr12	76021909	76024065	+	0	NA	Intergenic	L2a|LINE|L2	-117569	NM_007043	11103	Hs.645517	NM_007043	ENSG00000111615	KRR1	HRB2|RIP-1	KRR1, small subunit processome component homolog	protein-coding
610	chr2	226891456	226899304	+	0	NA	Intergenic	Intergenic	-112130	NR_046102	646736	Hs.712836	NR_046102		LOC646736	-	uncharacterized LOC646736	ncRNA
615	chr10	74019021	74024495	+	0	NA	Intergenic	AluJr4|SINE|Alu	-11919	NM_019058	54541	Hs.744875	NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
698	chr9	127495386	127498596	+	0	NA	intron (NM_001489, intron 1 of 9)	AluSz|SINE|Alu	36598	NM_001489	2649	Hs.20131	NM_001489	ENSG00000148200	NR6A1	CT150|GCNF|GCNF1|NR61|RTR|hGCNF|hRTR	nuclear receptor subfamily 6 group A member 1	protein-coding
202	chr1	164713989	164723521	+	0	NA	intron (NM_001353131, intron 2 of 7)	intron (NM_001353131, intron 2 of 7)	25123	NR_038072	100505795	Hs.661039	NR_038072	ENSG00000233693	LOC100505795	-	uncharacterized LOC100505795	ncRNA
43	chr1	78443161	78446521	+	0	NA	promoter-TSS (NM_001317100)	promoter-TSS (NM_001317100)	-1	NM_001317100	11080	Hs.13852	NM_007034	ENSG00000162616	DNAJB4	DNAJW|DjB4|HLJ1	DnaJ heat shock protein family (Hsp40) member B4	protein-coding
371	chr12	120684450	120687149	+	0	NA	intron (NM_001080855, intron 1 of 11)	L1MEc|LINE|L1	2165	NM_025157	5829	Hs.446336	NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
476	chr1	155946068	155950590	+	0	NA	promoter-TSS (NM_001162383)	promoter-TSS (NM_001162383)	7	NM_001162383	9181	Hs.743352	NM_004723	ENSG00000116584	ARHGEF2	GEF|GEF-H1|GEFH1|LFP40|NEDMHM|P40	Rho/Rac guanine nucleotide exchange factor 2	protein-coding
6	chr11	8984287	8988436	+	0	NA	promoter-TSS (NM_001286094)	promoter-TSS (NM_001286094)	-41	NM_020644	56674	Hs.501853	NM_020644	ENSG00000175348	TMEM9B	C11orf15	TMEM9 domain family member B	protein-coding
172	chr17	73676433	73682373	+	0	NA	intron (NM_013260, intron 3 of 10)	AluSz|SINE|Alu	-16134	NM_001003716	9400	Hs.632229	NM_004259	ENSG00000108469	RECQL5	RECQ5	RecQ like helicase 5	protein-coding
463	chr12	76014580	76019721	+	0	NA	Intergenic	L1MA7|LINE|L1	-111732	NM_007043	11103	Hs.645517	NM_007043	ENSG00000111615	KRR1	HRB2|RIP-1	KRR1, small subunit processome component homolog	protein-coding
541	chr6	31460961	31466760	+	0	NA	intron (NM_001289160, intron 1 of 5)	MER5B|DNA|hAT-Charlie	1202	NM_001289160	4277	Hs.731446	NM_005931	ENSG00000204516	MICB	PERB11.2	MHC class I polypeptide-related sequence B	protein-coding
46	chr9	139303300	139306956	+	0	NA	promoter-TSS (NM_006643)	promoter-TSS (NM_006643)	-74	NM_006643	10807	Hs.94300	NM_006643	ENSG00000165689	SDCCAG3	NY-CO-3	serologically defined colon cancer antigen 3	protein-coding
502	chr11	118121538	118124716	+	0	NA	promoter-TSS (NR_104404)	promoter-TSS (NR_104404)	-44	NM_001286152	196264	Hs.15396	NM_198275	ENSG00000160588	MPZL3	-	myelin protein zero like 3	protein-coding
332	chr11	63948072	63955185	+	0	NA	Intergenic	L2a|LINE|L2	-1116	NM_001282652	10963	Hs.337295	NM_006819	ENSG00000168439	STIP1	HEL-S-94n|HOP|IEF-SSP-3521|P60|STI1|STI1L	stress induced phosphoprotein 1	protein-coding
878	chr11	62536796	62540220	+	0	NA	promoter-TSS (NM_006473)	promoter-TSS (NM_006473)	-267	NM_006473	10629	Hs.714400	NM_006473	ENSG00000162227	TAF6L	PAF65A	TATA-box binding protein associated factor 6 like	protein-coding
906	chr1	223886965	223891301	+	0	NA	promoter-TSS (NM_001146068)	promoter-TSS (NM_001146068)	-162	NM_001146068	824	Hs.350899	NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
761	chr18	67845416	67851565	+	0	NA	intron (NM_001318520, intron 10 of 47)	intron (NM_001318520, intron 10 of 47)	24472	NM_001318520	25914	Hs.654809	NM_173630	ENSG00000176225	RTTN	MSSP	rotatin	protein-coding
773	chr10	28361358	28362745	+	0	NA	TTS (NR_132973)	TTS (NR_132973)	256	NR_132973	106635548		NR_132973		SNORD130	-	small nucleolar RNA, C/D box 130	snoRNA
765	chr19	13370200	13373247	+	0	NA	intron (NM_000068, intron 26 of 46)	AluJr|SINE|Alu	110441	NM_004907	9592	Hs.501629	NM_004907	ENSG00000160888	IER2	ETR101	immediate early response 2	protein-coding
719	chr19	7932689	7937813	+	0	NA	exon (NM_001190467, exon 6 of 7)	exon (NM_001190467, exon 6 of 7)	4075	NR_104345	80164	Hs.288540	NM_001080403	ENSG00000183248	PRR36	-	proline rich 36	protein-coding
826	chr1	959013	961731	+	0	NA	intron (NM_198576, intron 2 of 35)	intron (NM_198576, intron 2 of 35)	4869	NM_001305275	375790	Hs.273330	NM_198576	ENSG00000188157	AGRN	AGRIN|CMS8|CMSPPD	agrin	protein-coding
647	chr1	8213051	8217741	+	0	NA	Intergenic	Intergenic	-53336	NR_125998	102724539	Hs.516816	NR_125998	ENSG00000227634	LINC01714	-	long intergenic non-protein coding RNA 1714	ncRNA
493	chr3	31572293	31576221	+	0	NA	5' UTR (NM_178862, exon 1 of 16)	5' UTR (NM_178862, exon 1 of 16)	264	NM_178862	201595	Hs.475812	NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3B, catalytic subunit of the oligosaccharyltransferase complex	protein-coding
550	chr7	92260983	92265782	+	0	NA	intron (NM_001259, intron 5 of 7)	L1M5|LINE|L1	-43674	NR_109929	257415	Hs.18564	NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
286	chr13	27956904	27959020	+	0	NA	Intergenic	LTR1|LTR|ERV1	-40719	NM_002097	2971	Hs.445977	NM_002097	ENSG00000122034	GTF3A	AP2|TFIIIA	general transcription factor IIIA	protein-coding
57	chr19	41868783	41871372	+	0	NA	promoter-TSS (NM_030578)	promoter-TSS (NM_030578)	1	NM_030578	80776	Hs.567596	NM_030578	ENSG00000123810	B9D2	ICIS-1|JBTS34|MKS10|MKSR2	B9 domain containing 2	protein-coding
38	chr7	100229028	100232115	+	0	NA	intron (NM_003227, intron 6 of 17)	intron (NM_003227, intron 6 of 17)	702	NM_001206855	7036	Hs.544932	NM_003227	ENSG00000106327	TFR2	HFE3|TFRC2	transferrin receptor 2	protein-coding
907	chr17	1168352	1173165	+	0	NA	Intergenic	L2b|LINE|L2	-3100	NM_001164405	727857	Hs.723790	NM_001164405	ENSG00000205899	BHLHA9	BHLHF42|CCSPD	basic helix-loop-helix family member a9	protein-coding
160	chr9	130317086	130321385	+	0	NA	intron (NM_001035534, intron 1 of 13)	AluJo|SINE|Alu	12161	NM_022833	64855	Hs.522401	NM_022833	ENSG00000136830	FAM129B	C9orf88|MEG-3|MINERVA|OC58|bA356B19.6	family with sequence similarity 129 member B	protein-coding
769	chr1	205416160	205421620	+	0	NA	intron (NR_103783, intron 1 of 1)	intron (NR_103783, intron 1 of 1)	-1364	NR_029893	442891		NR_029893	ENSG00000199059	MIR135B	MIRN135B|mir-135b	microRNA 135b	ncRNA
501	chr7	101684152	101687326	+	0	NA	intron (NM_001913, intron 3 of 22)	intron (NM_001913, intron 3 of 22)	224857	NM_181552	1523	Hs.191482	NM_001913	ENSG00000257923	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75	cut like homeobox 1	protein-coding
131	chr13	100618826	100624798	+	0	NA	promoter-TSS (NR_146225)	promoter-TSS (NR_146225)	-386	NR_146225	85416	Hs.508570	NM_033132	ENSG00000139800	ZIC5	-	Zic family member 5	protein-coding
882	chr7	75946124	75949379	+	0	NA	Intergenic	CpG	15876	NM_001540	3315	Hs.520973	NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
88	chr12	66021461	66030588	+	0	NA	intron (NR_120432, intron 1 of 4)	MLT1H1|LTR|ERVL-MaLR	10128	NR_120432	100507065	Hs.591038	NR_120431		LOC100507065	-	uncharacterized LOC100507065	ncRNA
169	chr17	7139996	7147811	+	0	NA	3' UTR (NM_007278, exon 4 of 4)	3' UTR (NM_007278, exon 4 of 4)	-1078	NM_001284517	79142	Hs.644724	NM_024297	ENSG00000040633	PHF23	hJUNE-1b	PHD finger protein 23	protein-coding
60	chr22	19417514	19421520	+	0	NA	promoter-TSS (NM_001318152)	promoter-TSS (NM_001318152)	92	NM_003776	64976	Hs.431307	NM_003776	ENSG00000185608	MRPL40	L40mt|MRP-L22|MRP-L40|MRPL22|NLVCF|URIM	mitochondrial ribosomal protein L40	protein-coding
617	chr7	99100893	99103930	+	0	NA	promoter-TSS (NM_014569)	promoter-TSS (NM_014569)	144	NM_145102	23660	Hs.110839	NM_014569	ENSG00000196652	ZKSCAN5	ZFP-95|ZFP95|ZNF914|ZSCAN37	zinc finger with KRAB and SCAN domains 5	protein-coding
390	chr17	7296381	7299256	+	0	NA	5' UTR (NM_020360, exon 1 of 8)	5' UTR (NM_020360, exon 1 of 8)	344	NM_001201576	57048	Hs.534591	NM_020360	ENSG00000187838	PLSCR3	-	phospholipid scramblase 3	protein-coding
564	chr17	43393055	43400063	+	0	NA	Intergenic	Intergenic	-2129	NM_003954	9020	Hs.404183	NM_003954	ENSG00000006062	MAP3K14	FTDCR1B|HS|HSNIK|NIK	mitogen-activated protein kinase kinase kinase 14	protein-coding
941	chr7	134575495	134577550	+	0	NA	intron (NM_033139, intron 1 of 12)	intron (NM_033139, intron 1 of 12)	371	NM_033140	800	Hs.490203	NM_004342	ENSG00000122786	CALD1	CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22	caldesmon 1	protein-coding
95	chr19	17492554	17495235	+	0	NA	Intergenic	AluY|SINE|Alu	-5736	NM_031310	83483	Hs.107125	NM_031310	ENSG00000130300	PLVAP	FELS|PV-1|PV1|gp68	plasmalemma vesicle associated protein	protein-coding
255	chr17	7305766	7309680	+	0	NA	promoter-TSS (NR_037719)	promoter-TSS (NR_037719)	-266	NM_152766	254863	Hs.730789	NM_152766	ENSG00000205544	TMEM256	C17orf61	transmembrane protein 256	protein-coding
663	chr6	26194621	26208197	+	0	NA	Intergenic	AluSp|SINE|Alu	1622	NM_003522	8343	Hs.182137	NM_003522	ENSG00000277224	HIST1H2BF	H2B/g|H2BFG	histone cluster 1 H2B family member f	protein-coding
27	chr3	185244542	185246260	+	0	NA	intron (NM_139248, intron 3 of 9)	intron (NM_139248, intron 3 of 9)	24968	NM_139248	200879	Hs.68864	NM_139248	ENSG00000163898	LIPH	AH|ARWH2|HYPT7|LAH2|LPDLR|PLA1B|mPA-PLA1	lipase H	protein-coding
11	chr7	73235240	73238925	+	0	NA	Intergenic	Intergenic	-8111	NM_001305	1364	Hs.647036	NM_001305	ENSG00000189143	CLDN4	CPE-R|CPER|CPETR|CPETR1|WBSCR8|hCPE-R	claudin 4	protein-coding
749	chr22	36745355	36748974	+	0	NA	intron (NM_002473, intron 1 of 40)	intron (NM_002473, intron 1 of 40)	36948	NM_002473	4627	Hs.474751	NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
950	chr8	8145563	8147707	+	0	NA	Intergenic	Intergenic	60543	NR_024361	286042	Hs.656318	NR_024361	ENSG00000173295	FAM86B3P	-	family with sequence similarity 86, member A pseudogene	pseudo
5	chr16	28856097	28859209	+	0	NA	promoter-TSS (NM_001308293)	promoter-TSS (NM_001308293)	76	NM_003321	7284	Hs.12084	NM_003321	ENSG00000178952	TUFM	COXPD4|EF-TuMT|EFTU|P43	Tu translation elongation factor, mitochondrial	protein-coding
102	chr6	116690257	116693997	+	0	NA	promoter-TSS (NM_001322943)	promoter-TSS (NM_001322943)	94	NM_001322943	29940	Hs.458358	NM_013352	ENSG00000111817	DSE	DS-epi1|DSEP|DSEPI|EDSMC2|SART-2|SART2	dermatan sulfate epimerase	protein-coding
602	chr12	66021461	66030588	+	0	NA	intron (NR_120432, intron 1 of 4)	MLT1H1|LTR|ERVL-MaLR	10128	NR_120432	100507065	Hs.591038	NR_120431		LOC100507065	-	uncharacterized LOC100507065	ncRNA
128	chr1	235323135	235325909	+	0	NA	exon (NM_001346738, exon 1 of 11)	exon (NM_001346738, exon 1 of 11)	409	NR_144492	23029	Hs.535224	NM_015014	ENSG00000188739	RBM34	-	RNA binding motif protein 34	protein-coding
197	chr10	104997722	105002938	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-5314	NM_001143909	729020	Hs.458437	NM_001143909	ENSG00000235376	RPEL1	-	ribulose-5-phosphate-3-epimerase like 1	protein-coding
873	chr1	52101476	52105392	+	0	NA	intron (NM_148906, intron 1 of 22)	MamRep605|Unknown|Unknown	20888	NM_148909	114883	Hs.21938	NM_024586	ENSG00000117859	OSBPL9	ORP-9|ORP9	oxysterol binding protein like 9	protein-coding
349	chr21	37506492	37508425	+	0	NA	5' UTR (NM_001236, exon 1 of 3)	5' UTR (NM_001236, exon 1 of 3)	195	NM_001236	874	Hs.154510	NM_001236	ENSG00000159231	CBR3	HEL-S-25|SDR21C2|hCBR3	carbonyl reductase 3	protein-coding
422	chr11	9593627	9598172	+	0	NA	promoter-TSS (NM_001143976)	promoter-TSS (NM_001143976)	-335	NM_001143976	7465	Hs.249441	NM_003390	ENSG00000166483	WEE1	WEE1A|WEE1hu	WEE1 G2 checkpoint kinase	protein-coding
26	chr14	105130850	105135065	+	0	NA	Intergenic	L1ME2|LINE|L1	-1062	NR_135293	101929634	Hs.532502	NR_135293	ENSG00000260792	LINC02280	-	long intergenic non-protein coding RNA 2280	ncRNA
386	chr4	30875771	30886350	+	0	NA	intron (NM_001173523, intron 1 of 2)	intron (NM_001173523, intron 1 of 2)	159023	NM_002589	5099	Hs.479439	NM_002589	ENSG00000169851	PCDH7	BH-Pcdh|BHPCDH|PPP1R120	protocadherin 7	protein-coding
613	chrX	48753519	48756491	+	0	NA	promoter-TSS (NM_005710)	promoter-TSS (NM_005710)	-190	NM_001032382	10084	Hs.534384	NM_005710	ENSG00000102103	PQBP1	MRX2|MRX55|MRXS3|MRXS8|NPW38|RENS1|SHS	polyglutamine binding protein 1	protein-coding
584	chr3	50352953	50360426	+	0	NA	intron (NM_033158, intron 3 of 4)	intron (NM_033158, intron 3 of 4)	3592	NM_003773	8692	Hs.76873	NM_003773	ENSG00000068001	HYAL2	LUCA2	hyaluronoglucosaminidase 2	protein-coding
459	chr4	123841841	123845346	+	0	NA	promoter-TSS (NM_145207)	promoter-TSS (NM_145207)	168	NM_007083	11162	Hs.558459	NM_007083	ENSG00000170917	NUDT6	ASFGF2|FGF-AS|FGF2AS|GFG-1|GFG1	nudix hydrolase 6	protein-coding
535	chr7	24858823	24868137	+	0	NA	intron (NR_104112, intron 14 of 20)	intron (NR_104112, intron 14 of 20)	-65841	NM_001127454	1687	Hs.520708	NM_004403	ENSG00000105928	GSDME	DFNA5|ICERE-1	gasdermin E	protein-coding
432	chrX	48658638	48662345	+	0	NA	promoter-TSS (NM_006044)	promoter-TSS (NM_006044)	68	NM_001321230	10013	Hs.6764	NM_006044	ENSG00000094631	HDAC6	CPBHM|HD6|JM21|PPP1R90	histone deacetylase 6	protein-coding
911	chr12	13249798	13256436	+	0	NA	intron (NM_001206842, intron 1 of 5)	intron (NM_001206842, intron 1 of 5)	3513	NM_001080555	83445	Hs.240053	NM_031289	ENSG00000111305	GSG1	-	germ cell associated 1	protein-coding
989	chr1	15735649	15737809	+	0	NA	exon (NM_024329, exon 1 of 4)	exon (NM_024329, exon 1 of 4)	338	NM_024329	79180	Hs.465374	NM_024329	ENSG00000142634	EFHD2	SWS1	EF-hand domain family member D2	protein-coding
852	chr16	768335	773130	+	0	NA	promoter-TSS (NM_001271285)	promoter-TSS (NM_001271285)	-410	NM_001271285	65990	Hs.166244	NM_023933	ENSG00000103254	FAM173A	C16orf24	family with sequence similarity 173 member A	protein-coding
447	chr10	114257308	114261653	+	0	NA	intron (NM_145206, intron 3 of 7)	L2c|LINE|L2	-52176	NM_001351082	64429	Hs.196990	NM_022494	ENSG00000023041	ZDHHC6	DHHC-6|ZNF376	zinc finger DHHC-type containing 6	protein-coding
833	chr17	79449773	79452654	+	0	NA	Intergenic	CpG	28612	NM_001614	71	Hs.514581	NM_001614	ENSG00000184009	ACTG1	ACT|ACTG|DFNA20|DFNA26|HEL-176	actin gamma 1	protein-coding
574	chr10	114161787	114166605	+	0	NA	intron (NM_203379, intron 3 of 20)	intron (NM_203379, intron 3 of 20)	28240	NM_016234	51703	Hs.11638	NM_016234	ENSG00000197142	ACSL5	ACS2|ACS5|FACL5	acyl-CoA synthetase long chain family member 5	protein-coding
540	chr2	62683238	62686875	+	0	NA	Intergenic	Intergenic	48548	NM_198276	200728	Hs.308028	NM_198276	ENSG00000186889	TMEM17	-	transmembrane protein 17	protein-coding
576	chr9	137214990	137220294	+	0	NA	promoter-TSS (NM_002957)	promoter-TSS (NM_002957)	-667	NM_002957	6256	Hs.590886	NM_002957	ENSG00000186350	RXRA	NR2B1	retinoid X receptor alpha	protein-coding
457	chr19	13946392	13967246	+	0	NA	Intergenic	L2a|LINE|L2	-9346	NR_029495	407010		NR_029495	ENSG00000207980	MIR23A	MIRN23A|hsa-mir-23a|miRNA23A|mir-23a	microRNA 23a	ncRNA
975	chr5	176898627	176901239	+	0	NA	promoter-TSS (NM_080881)	promoter-TSS (NM_080881)	-62	NM_080881	1627	Hs.130316	NM_004395	ENSG00000113758	DBN1	D0S117E	drebrin 1	protein-coding
496	chr16	2562288	2565813	+	0	NA	5' UTR (NM_001694, exon 1 of 3)	5' UTR (NM_001694, exon 1 of 3)	179	NM_001694	527	Hs.389107	NM_001694	ENSG00000185883	ATP6V0C	ATP6C|ATP6L|ATPL|VATL|VPPC|Vma3	ATPase H+ transporting V0 subunit c	protein-coding
867	chr8	126437037	126447343	+	0	NA	promoter-TSS (NM_025195)	promoter-TSS (NM_025195)	-373	NM_025195	10221	Hs.444947	NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
890	chr9	139837420	139840386	+	0	NA	promoter-TSS (NM_000606)	promoter-TSS (NM_000606)	303	NM_018998	54461	Hs.522507	NM_018998	ENSG00000159069	FBXW5	Fbw5	F-box and WD repeat domain containing 5	protein-coding
875	chr10	105109632	105111863	+	0	NA	exon (NM_032154, exon 1 of 7)	exon (NM_032154, exon 1 of 7)	144	NM_032154	84108	Hs.335808	NM_032154	ENSG00000156374	PCGF6	MBLR|RNF134	polycomb group ring finger 6	protein-coding
83	chr2	219133303	219135440	+	0	NA	promoter-TSS (NM_015488)	promoter-TSS (NM_015488)	561	NM_001302545	14	Hs.83347	NM_001087	ENSG00000127837	AAMP	-	angio associated migratory cell protein	protein-coding
849	chr1	36021670	36025538	+	0	NA	promoter-TSS (NM_024874)	promoter-TSS (NM_024874)	211	NM_001014841	23154	Hs.121870	NM_014284	ENSG00000020129	NCDN	-	neurochondrin	protein-coding
356	chr2	232525690	232533077	+	0	NA	Intergenic	AluSx|SINE|Alu	-43852	NM_002823	5757	Hs.459927	NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
521	chr14	77488130	77497310	+	0	NA	exon (NM_024496, exon 1 of 1)	exon (NM_024496, exon 1 of 1)	2322	NM_024496	64207	Hs.179260	NM_024496	ENSG00000119669	IRF2BPL	C14orf4|EAP1	interferon regulatory factor 2 binding protein like	protein-coding
625	chr6	26336236	26338345	+	0	NA	Intergenic	LTR33A|LTR|ERVL	-28097	NM_007047	11118	Hs.376046	NM_007047	ENSG00000186470	BTN3A2	BT3.2|BTF4|BTN3.2|CD277	butyrophilin subfamily 3 member A2	protein-coding
76	chr2	73962410	73965775	+	0	NA	intron (NM_001330388, intron 1 of 5)	intron (NM_001330388, intron 1 of 5)	296	NM_001330388	51002	Hs.157401	NM_016058	ENSG00000144034	TPRKB	CGI-121|CGI121|GAMOS5	TP53RK binding protein	protein-coding
256	chr1	156425570	156428305	+	0	NA	Intergenic	CpG	-27597	NR_135260	10485	Hs.380027	NM_006365	ENSG00000125462	C1orf61	CROC4	chromosome 1 open reading frame 61	protein-coding
543	chr6	159106627	159109059	+	0	NA	intron (NM_001009991, intron 7 of 16)	LTR50|LTR|ERVL	23408	NM_001318745	94120	Hs.436977	NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
127	chr10	75838255	75842326	+	0	NA	intron (NM_014000, intron 6 of 21)	intron (NM_014000, intron 6 of 21)	70259	NM_001320264	26985	Hs.500104	NM_012095	ENSG00000185009	AP3M1	-	adaptor related protein complex 3 subunit mu 1	protein-coding
318	chr17	61625732	61629789	+	0	NA	promoter-TSS (NR_073585)	promoter-TSS (NR_073585)	-36	NM_005828	10238	Hs.410596	NM_005828	ENSG00000136485	DCAF7	AN11|HAN11|SWAN-1|WDR68	DDB1 and CUL4 associated factor 7	protein-coding
847	chr16	30661564	30663914	+	0	NA	intron (NM_024031, intron 1 of 11)	CpG	551	NM_024031	78994	Hs.293629	NM_024031	ENSG00000156858	PRR14	-	proline rich 14	protein-coding
662	chr11	62605865	62610819	+	0	NA	promoter-TSS (NM_018093)	promoter-TSS (NM_018093)	-714	NM_018093	54663	Hs.654620	NM_018093	ENSG00000133316	WDR74	-	WD repeat domain 74	protein-coding
713	chr7	101738771	101742803	+	0	NA	intron (NM_001913, intron 5 of 22)	intron (NM_001913, intron 5 of 22)	-187566	NM_020979	10603	Hs.489448	NM_020979	ENSG00000160999	SH2B2	APS	SH2B adaptor protein 2	protein-coding
582	chr1	36849869	36854169	+	0	NA	promoter-TSS (NM_032017)	promoter-TSS (NM_032017)	-491	NM_001282547	83931	Hs.471768	NM_032017	ENSG00000196182	STK40	SHIK|SgK495	serine/threonine kinase 40	protein-coding
167	chr1	180990715	180992581	+	0	NA	intron (NM_005819, intron 1 of 7)	intron (NM_005819, intron 1 of 7)	609	NM_005819	10228	Hs.518417	NM_005819	ENSG00000135823	STX6	-	syntaxin 6	protein-coding
995	chr11	60671999	60674714	+	0	NA	intron (NM_014502, intron 1 of 15)	MIR3|SINE|MIR	705	NM_014502	27339	Hs.502705	NM_014502	ENSG00000110107	PRPF19	NMP200|PRP19|PSO4|SNEV|UBOX4|hPSO4	pre-mRNA processing factor 19	protein-coding
723	chr8	94876753	94901131	+	0	NA	Intergenic	MER96|DNA|hAT	39405	NR_039602	100616169		NR_039602	ENSG00000284288	MIR378D2	mir-378d-2	microRNA 378d-2	ncRNA
951	chr9	37940077	37945567	+	0	NA	intron (NM_003028, intron 5 of 5)	intron (NM_003028, intron 5 of 5)	-38472	NR_024873	92014	Hs.634120	NM_033412	ENSG00000122696	SLC25A51	CG7943|MCART1	solute carrier family 25 member 51	protein-coding
381	chr1	33114807	33118384	+	0	NA	promoter-TSS (NM_001308135)	promoter-TSS (NM_001308135)	-154	NM_001135255	5928	Hs.16003	NM_005610	ENSG00000162521	RBBP4	NURF55|RBAP48|lin-53	RB binding protein 4, chromatin remodeling factor	protein-coding
138	chr6	27247753	27249966	+	0	NA	Intergenic	L1M2|LINE|L1	31152	NM_033482	94026	Hs.729955	NM_033482	ENSG00000158553	POM121L2	POM121-L|POM121L	POM121 transmembrane nucleoporin like 2	protein-coding
701	chr1	6257328	6261703	+	0	NA	intron (NM_000983, intron 1 of 3)	CpG	164	NM_000983	6146	Hs.515329	NM_000983	ENSG00000116251	RPL22	EAP|HBP15|HBP15/L22|L22	ribosomal protein L22	protein-coding
213	chr16	2299830	2303130	+	0	NA	intron (NM_001919, intron 1 of 6)	CpG-8671	122	NM_001178029	1632	Hs.403436	NM_001919	ENSG00000167969	ECI1	DCI	enoyl-CoA delta isomerase 1	protein-coding
147	chr11	47938124	47941216	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-62440	NM_002843	5795	Hs.318547	NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1	protein tyrosine phosphatase, receptor type J	protein-coding
656	chr1	16692422	16695815	+	0	NA	intron (NR_073500, intron 1 of 1)	CpG	593	NR_073500	26099	Hs.252967	NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
866	chr16	68770921	68772738	+	0	NA	intron (NM_004360, intron 1 of 15)	CpG	636	NM_001317186	999	Hs.461086	NM_004360	ENSG00000039068	CDH1	Arc-1|BCDS1|CD324|CDHE|ECAD|LCAM|UVO	cadherin 1	protein-coding
137	chr19	39887317	39904215	+	0	NA	Intergenic	Intergenic	-1721	NM_003407	7538	Hs.534052	NM_003407	ENSG00000128016	ZFP36	G0S24|GOS24|NUP475|RNF162A|TIS11|TTP|zfp-36	ZFP36 ring finger protein	protein-coding
330	chr2	26219474	26221840	+	0	NA	Intergenic	Intergenic	-15214	NM_002254	3797	Hs.21611	NM_002254	ENSG00000084731	KIF3C	-	kinesin family member 3C	protein-coding
159	chr17	79847154	79850947	+	0	NA	promoter-TSS (NM_001289418)	promoter-TSS (NM_001289418)	384	NM_001289414	51529	Hs.534456	NM_016476	ENSG00000141552	ANAPC11	APC11|Apc11p|HSPC214	anaphase promoting complex subunit 11	protein-coding
468	chr3	57736578	57743558	+	0	NA	Intergenic	Intergenic	-2915	NM_007159	7871	Hs.476432	NM_007159	ENSG00000163681	SLMAP	SLAP	sarcolemma associated protein	protein-coding
300	chr12	76126831	76134832	+	0	NA	Intergenic	MER6A|DNA|TcMar-Tigger	-225413	NM_007043	11103	Hs.645517	NM_007043	ENSG00000111615	KRR1	HRB2|RIP-1	KRR1, small subunit processome component homolog	protein-coding
444	chr6	31627370	31629940	+	0	NA	promoter-TSS (NM_021184).7	promoter-TSS (NM_021184).7	-106	NM_021184	57827	Hs.247323	NM_021184	ENSG00000204439	C6orf47	D6S53E|G4|NG34	chromosome 6 open reading frame 47	protein-coding
64	chr11	65081905	65085629	+	0	NA	intron (NM_006779, intron 1 of 1)	intron (NM_006779, intron 1 of 1)	1478	NM_006779	10435	Hs.343380	NM_006779	ENSG00000149798	CDC42EP2	BORG1|CEP2	CDC42 effector protein 2	protein-coding
345	chr1	178504973	178508260	+	0	NA	Intergenic	Intergenic	-5315	NR_033186	400798	Hs.668085	NM_207467	ENSG00000213057	C1orf220	-	chromosome 1 open reading frame 220 (putative)	ncRNA
253	chr12	79289825	79294263	+	0	NA	intron (NM_005639, intron 1 of 10)	MIR|SINE|MIR	33595	NM_005639	6857	Hs.310545	NM_005639	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin 1	protein-coding
964	chr3	187869425	187873026	+	0	NA	promoter-TSS (NM_001167672)	promoter-TSS (NM_001167672)	-436	NM_001167672	4026	Hs.720220	NM_005578	ENSG00000145012	LPP	-	LIM domain containing preferred translocation partner in lipoma	protein-coding
690	chr17	36619509	36623373	+	0	NA	intron (NM_001199417, intron 6 of 23)	intron (NM_001199417, intron 6 of 23)	36721	NM_001199417	57636	Hs.374446	NM_020876	ENSG00000275832	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding
940	chr2	227070293	227082573	+	0	NA	Intergenic	Intergenic	68923	NR_046102	646736	Hs.712836	NR_046102		LOC646736	-	uncharacterized LOC646736	ncRNA
264	chr4	26319553	26324224	+	0	NA	promoter-TSS (NM_203284)	promoter-TSS (NM_203284)	-541	NM_203284	3516	Hs.479396	NM_005349	ENSG00000168214	RBPJ	AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
563	chr9	111796964	111801468	+	0	NA	intron (NM_032012, intron 15 of 17)	MIRb|SINE|MIR	9362	NR_029506	407036		NR_029506	ENSG00000207698	MIR32	MIRN32|hsa-mir-32|miR-32|miRNA32	microRNA 32	ncRNA
434	chr8	145741175	145744865	+	0	NA	promoter-TSS (NM_001272036)	promoter-TSS (NM_001272036)	190	NM_004260	9401	Hs.31442	NM_004260	ENSG00000160957	RECQL4	RECQ4	RecQ like helicase 4	protein-coding
191	chr5	114960508	114962857	+	0	NA	5' UTR (NM_181836, exon 1 of 3)	5' UTR (NM_181836, exon 1 of 3)	194	NM_181836	51014	Hs.642817	NM_181836	ENSG00000134970	TMED7	CGI-109|p24g3|p24gamma3|p27	transmembrane p24 trafficking protein 7	protein-coding
991	chr12	53692610	53695438	+	0	NA	TTS (NM_002624)	TTS (NM_002624)	554	NM_021640	60314	Hs.655988	NM_021640	ENSG00000139637	C12orf10	Gamm1|MST024|MSTP024|MYG|MYG1	chromosome 12 open reading frame 10	protein-coding
621	chr16	3178231	3180643	+	0	NA	intron (NR_110900, intron 4 of 5)	LTR41|LTR|ERVL	5446	NR_110900	100507458	Hs.522143	NR_110900		ZNF213-AS1	-	ZNF213 antisense RNA 1 (head to head)	ncRNA
930	chr14	50526887	50531182	+	0	NA	intron (NR_131171, intron 2 of 8)	intron (NR_131171, intron 2 of 8)	42727	NR_131171	196913	Hs.406934	NM_001014830		LINC01599	C14orf183	long intergenic non-protein coding RNA 1599	ncRNA
578	chr12	76014580	76019721	+	0	NA	Intergenic	L1MA7|LINE|L1	-111732	NM_007043	11103	Hs.645517	NM_007043	ENSG00000111615	KRR1	HRB2|RIP-1	KRR1, small subunit processome component homolog	protein-coding
562	chr12	56389502	56392105	+	0	NA	promoter-TSS (NM_001032387)	promoter-TSS (NM_001032387)	-240	NM_000456	6821	Hs.558403	NM_000456	ENSG00000139531	SUOX	-	sulfite oxidase	protein-coding
439	chr3	49447980	49451276	+	0	NA	promoter-TSS (NM_022171)	promoter-TSS (NM_022171)	-11	NM_022171	6988	Hs.517962	NM_022171	ENSG00000145022	TCTA	-	T cell leukemia translocation altered	protein-coding
45	chr7	130534621	130541142	+	0	NA	Intergenic	Intergenic	23688	NR_029503	407021		NR_029503	ENSG00000284032	MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a	microRNA 29a	ncRNA
384	chr10	91869274	91873390	+	0	NA	Intergenic	Intergenic	-154202	NR_110655	101926924	Hs.500498	NR_110655	ENSG00000226159	LINC01375	-	long intergenic non-protein coding RNA 1375	ncRNA
49	chr15	99269291	99273190	+	0	NA	intron (NM_000875, intron 2 of 20)	(T)n|Simple_repeat|Simple_repeat	-56415	NR_039864	100616432		NR_039864	ENSG00000264480	MIR4714	-	microRNA 4714	ncRNA
413	chr16	1346095	1348545	+	0	NA	Intergenic	AluSx1|SINE|Alu	-11834	NM_194261	7329	Hs.302903	NM_003345	ENSG00000103275	UBE2I	C358B7.1|P18|UBC9	ubiquitin conjugating enzyme E2 I	protein-coding
445	chr16	57332117	57335105	+	0	NA	Intergenic	MER113|DNA|hAT-Charlie	-15027	NM_015993	51090	Hs.632215	NM_015993	ENSG00000102934	PLLP	PMLP|TM4SF11	plasmolipin	protein-coding
174	chr5	36605603	36608157	+	0	NA	intron (NM_001166696, intron 1 of 1)	intron (NM_001166696, intron 1 of 1)	423	NM_001166695	6507	Hs.481918	NM_004172	ENSG00000079215	SLC1A3	EA6|EAAT1|GLAST|GLAST1	solute carrier family 1 member 3	protein-coding
497	chr3	45159917	45169591	+	0	NA	intron (NM_178181, intron 1 of 3)	intron (NM_178181, intron 1 of 3)	23160	NM_178181	64866	Hs.476093	NM_022842	ENSG00000163814	CDCP1	CD318|SIMA135|TRASK	CUB domain containing protein 1	protein-coding
151	chr12	66339298	66344697	+	0	NA	intron (NM_003483, intron 3 of 4)	intron (NM_003483, intron 3 of 4)	-66050	NM_001292023	100129940	Hs.685856	NM_001292023	ENSG00000197301	LOC100129940	-	uncharacterized LOC100129940	protein-coding
840	chr5	92633830	92637803	+	0	NA	Intergenic	Intergenic	271233	NR_109825	441094	Hs.457407	NR_015369	ENSG00000237187	NR2F1-AS1	-	NR2F1 antisense RNA 1	ncRNA
670	chr7	73152000	73158973	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-2289	NM_148913	83451	Hs.647045	NM_148912	ENSG00000106077	ABHD11	PP1226|WBSCR21	abhydrolase domain containing 11	protein-coding
343	chr11	66622146	66628509	+	0	NA	exon (NM_024036, exon 1 of 2)	exon (NM_024036, exon 1 of 2)	451	NM_024036	78999	Hs.209979	NM_024036	ENSG00000173621	LRFN4	FIGLER6|SALM3|SALM3.	leucine rich repeat and fibronectin type III domain containing 4	protein-coding
331	chr16	30133279	30135599	+	0	NA	exon (NM_002746, exon 1 of 9)	exon (NM_002746, exon 1 of 9)	191	NM_001109891	5595	Hs.861	NM_002746	ENSG00000102882	MAPK3	ERK-1|ERK1|ERT2|HS44KDAP|HUMKER1A|P44ERK1|P44MAPK|PRKM3|p44-ERK1|p44-MAPK	mitogen-activated protein kinase 3	protein-coding
139	chr19	10215859	10219094	+	0	NA	promoter-TSS (NR_004381)	promoter-TSS (NR_004381)	577	NM_001198690	692312	Hs.14468	NM_001040664	ENSG00000243207	PPAN-P2RY11	-	PPAN-P2RY11 readthrough	protein-coding
96	chr17	72867658	72871520	+	0	NA	promoter-TSS (NR_047576)	promoter-TSS (NR_047576)	-433	NR_047576	2232	Hs.69745	NM_004110	ENSG00000161513	FDXR	ADXR|ANOA	ferredoxin reductase	protein-coding
986	chr12	6453817	6456232	+	0	NA	TTS (NM_001159576)	TTS (NM_001159576)	-3741	NR_144351	7132	Hs.279594	NM_001065	ENSG00000067182	TNFRSF1A	CD120a|FPF|TBP1|TNF-R|TNF-R-I|TNF-R55|TNFAR|TNFR1|TNFR55|TNFR60|p55|p55-R|p60	TNF receptor superfamily member 1A	protein-coding
789	chr17	49196689	49201303	+	0	NA	promoter-TSS (NM_001130527)	promoter-TSS (NM_001130527)	-770	NM_001130528	9043	Hs.463439	NM_003971	ENSG00000008294	SPAG9	CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6	sperm associated antigen 9	protein-coding
199	chr19	51503139	51506387	+	0	NA	intron (NM_007196, intron 1 of 5)	intron (NM_007196, intron 1 of 5)	195	NM_144505	11202	Hs.104570	NM_007196	ENSG00000129455	KLK8	HNP|NP|NRPN|PRSS19|TADG14	kallikrein related peptidase 8	protein-coding
673	chr11	64643144	64647495	+	0	NA	intron (NM_006795, intron 1 of 4)	intron (NM_006795, intron 1 of 4)	921	NM_006795	10938	Hs.523774	NM_006795	ENSG00000110047	EHD1	H-PAST|HPAST1|PAST|PAST1	EH domain containing 1	protein-coding
742	chr19	47103012	47105955	+	0	NA	promoter-TSS (NM_001205281)	promoter-TSS (NM_001205281)	-26	NM_001205281	100506012	Hs.671661	NM_001205281	ENSG00000230510	PPP5D1	-	PPP5 tetratricopeptide repeat domain containing 1	protein-coding
319	chr16	57125136	57127614	+	0	NA	promoter-TSS (NM_152727)	promoter-TSS (NM_152727)	-80	NM_152727	221184	Hs.339809	NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
626	chr14	24897141	24901730	+	0	NA	promoter-TSS (NM_001039771)	promoter-TSS (NM_001039771)	294	NM_015299	23351	Hs.713590	NM_015299	ENSG00000100441	KHNYN	KIAA0323	KH and NYN domain containing	protein-coding
406	chr1	36712696	36715029	+	0	NA	intron (NM_001321471, intron 2 of 12)	intron (NM_001321471, intron 2 of 12)	23845	NM_005119	9967	Hs.744057	NM_005119	ENSG00000054118	THRAP3	BCLAF2|TRAP150	thyroid hormone receptor associated protein 3	protein-coding
221	chr20	62272374	62276226	+	0	NA	intron (NM_001276310, intron 3 of 4)	intron (NM_001276310, intron 3 of 4)	9819	NM_001276310	50861	Hs.639609	NM_015894	ENSG00000197457	STMN3	SCLIP	stathmin 3	protein-coding
344	chr3	156541324	156546217	+	0	NA	promoter-TSS (NM_001193283)	promoter-TSS (NM_001193283)	-326	NM_001004316	389170	Hs.478048	NM_001004316	ENSG00000197980	LEKR1	-	leucine, glutamate and lysine rich 1	protein-coding
931	chr17	60500190	60502711	+	0	NA	intron (NM_181725, intron 1 of 8)	CpG	204	NM_181725	339175	Hs.381204	NM_181725	ENSG00000087995	METTL2A	METTL2	methyltransferase like 2A	protein-coding
453	chr1	11711994	11715390	+	0	NA	promoter-TSS (NM_001304791)	promoter-TSS (NM_001304791)	-740	NM_001304791	93611	Hs.556006	NM_033182	ENSG00000132879	FBXO44	FBG3|FBX30|FBX6A|Fbx44|Fbxo6a	F-box protein 44	protein-coding
658	chr9	88555546	88558172	+	0	NA	intron (NM_001321882, intron 1 of 22)	intron (NM_001321882, intron 1 of 22)	415	NM_001321882	60560	Hs.436098	NM_021929	ENSG00000135040	NAA35	EGAP|MAK10|MAK10P|bA379P1.1	N(alpha)-acetyltransferase 35, NatC auxiliary subunit	protein-coding
802	chr17	74090084	74092116	+	0	NA	intron (NM_001013839, intron 5 of 18)	AluSz|SINE|Alu	3057	NR_106928	102466753		NR_106928	ENSG00000275360	MIR6868	hsa-mir-6868	microRNA 6868	ncRNA
922	chr14	77488130	77497310	+	0	NA	exon (NM_024496, exon 1 of 1)	exon (NM_024496, exon 1 of 1)	2322	NM_024496	64207	Hs.179260	NM_024496	ENSG00000119669	IRF2BPL	C14orf4|EAP1	interferon regulatory factor 2 binding protein like	protein-coding
475	chr1	8248467	8265470	+	0	NA	Intergenic	AluJb|SINE|Alu	-11764	NR_125998	102724539	Hs.516816	NR_125998	ENSG00000227634	LINC01714	-	long intergenic non-protein coding RNA 1714	ncRNA
919	chr11	125460860	125464168	+	0	NA	promoter-TSS (NM_152713)	promoter-TSS (NM_152713)	-51	NR_132372	105369550	Hs.732083	NR_132372	ENSG00000254671	STT3A-AS1	-	STT3A antisense RNA 1	ncRNA
125	chr5	122109921	122112361	+	0	NA	5' UTR (NM_001278199, exon 1 of 15)	5' UTR (NM_001278199, exon 1 of 15)	450	NM_001278199	6643	Hs.125352	NM_003100	ENSG00000205302	SNX2	TRG-9	sorting nexin 2	protein-coding
871	chr14	21125205	21127622	+	0	NA	Intergenic	Intergenic	-16563	NM_001001968	341799	Hs.513132	NM_001001968	ENSG00000181803	OR6S1	OR14-37|OR6S1Q	olfactory receptor family 6 subfamily S member 1	protein-coding
650	chr6	27796028	27809060	+	0	NA	Intergenic	Intergenic	-3239	NM_003541	8362	Hs.528055	NM_003541	ENSG00000273542	HIST1H4K	H4/d|H4F2iii|H4FD|dJ160A22.1	histone cluster 1 H4 family member k	protein-coding
342	chr8	126122006	126124901	+	0	NA	intron (NM_173685, intron 3 of 7)	intron (NM_173685, intron 3 of 7)	19388	NR_146192	286053	Hs.388297	NM_173685	ENSG00000156831	NSMCE2	C8orf36|MMS21|NSE2|ZMIZ7	NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase	protein-coding
20	chr8	94876753	94901131	+	0	NA	Intergenic	MER96|DNA|hAT	39405	NR_039602	100616169		NR_039602	ENSG00000284288	MIR378D2	mir-378d-2	microRNA 378d-2	ncRNA
278	chr6	129808956	129816820	+	0	NA	intron (NM_000426, intron 56 of 64)	intron (NM_000426, intron 56 of 64)	218482	NM_033515	93663	Hs.486458	NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
355	chr8	144697500	144701091	+	0	NA	intron (NM_003313, intron 1 of 10)	CpG	354	NM_001317783	7264	Hs.404119	NM_003313	ENSG00000104522	TSTA3	FX|P35B|SDR4E1	tissue specific transplantation antigen P35B	protein-coding
897	chr2	182638641	182659387	+	0	NA	Intergenic	Intergenic	-103622	NM_002500	4760	Hs.574626	NM_002500	ENSG00000162992	NEUROD1	BETA2|BHF-1|MODY6|NEUROD|bHLHa3	neuronal differentiation 1	protein-coding
178	chr17	40818361	40821050	+	0	NA	TTS (NM_016437)	TTS (NM_016437)	8403	NR_073574	79990	Hs.632251	NM_024927	ENSG00000068137	PLEKHH3	-	pleckstrin homology, MyTH4 and FERM domain containing H3	protein-coding
634	chr4	123818082	123821036	+	0	NA	TTS (NM_002006)	TTS (NM_002006)	24202	NM_007083	11162	Hs.558459	NM_007083	ENSG00000170917	NUDT6	ASFGF2|FGF-AS|FGF2AS|GFG-1|GFG1	nudix hydrolase 6	protein-coding
548	chr11	6339271	6344193	+	0	NA	promoter-TSS (NM_145040)	promoter-TSS (NM_145040)	8	NM_145040	112464	Hs.434044	NM_145040	ENSG00000170955	CAVIN3	HSRBC|PRKCDBP|SRBC|cavin-3	caveolae associated protein 3	protein-coding
24	chr12	76254593	76258856	+	0	NA	Intergenic	Intergenic	168832	NM_007350	22822	Hs.602085	NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
853	chr1	23702498	23705646	+	0	NA	Intergenic	Intergenic	-7715	NM_001077195	80818	Hs.293798	NM_030634	ENSG00000125945	ZNF436	ZNF|Zfp46	zinc finger protein 436	protein-coding
987	chr1	153641481	153645631	+	0	NA	promoter-TSS (NM_001267809)	promoter-TSS (NM_001267809)	-52	NM_001267809	3608	Hs.75117	NM_004515	ENSG00000143621	ILF2	NF45|PRO3063	interleukin enhancer binding factor 2	protein-coding
261	chr17	48616039	48622496	+	0	NA	exon (NM_017957, exon 10 of 10)	exon (NM_017957, exon 10 of 10)	-3152	NR_135675	105371824	Hs.683630	NR_135675	ENSG00000250286	LOC105371824	-	uncharacterized LOC105371824	ncRNA
546	chr7	99677858	99681007	+	0	NA	promoter-TSS (NM_032924)	promoter-TSS (NM_032924)	-45	NM_017715	7551	Hs.435302	NM_017715	ENSG00000166526	ZNF3	A8-51|HF.12|KOX25|PP838|Zfp113	zinc finger protein 3	protein-coding
113	chr7	73049587	73052547	+	0	NA	Intergenic	MER5C|DNA|hAT-Charlie	-12194	NR_134541	51085	Hs.647055	NM_032951	ENSG00000009950	MLXIPL	CHREBP|MIO|MLX|MONDOB|WBSCR14|WS-bHLH|bHLHd14	MLX interacting protein like	protein-coding
354	chr1	154941751	154949651	+	0	NA	intron (NM_001202859, intron 1 of 12)	intron (NM_001202859, intron 1 of 12)	1258	NM_001130041	6464	Hs.433795	NM_003029	ENSG00000160691	SHC1	SHC|SHCA	SHC adaptor protein 1	protein-coding
925	chr12	56471777	56475165	+	0	NA	promoter-TSS (NM_001982)	promoter-TSS (NM_001982)	-338	NM_001982	2065	Hs.118681	NM_001982	ENSG00000065361	ERBB3	ErbB-3|HER3|LCCS2|MDA-BF-1|c-erbB-3|c-erbB3|erbB3-S|p180-ErbB3|p45-sErbB3|p85-sErbB3	erb-b2 receptor tyrosine kinase 3	protein-coding
764	chr11	67138046	67148726	+	0	NA	intron (NR_024469, intron 2 of 3)	G-rich|Low_complexity|Low_complexity	-1738	NM_001166212	23529	Hs.502977	NM_013246	ENSG00000175505	CLCF1	BSF-3|BSF3|CISS2|CLC|NNT-1|NNT1|NR6	cardiotrophin like cytokine factor 1	protein-coding
880	chr5	137909537	137912798	+	0	NA	5' UTR (NM_004134, exon 1 of 17)	5' UTR (NM_004134, exon 1 of 17)	151	NM_004134	3313	Hs.184233	NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
639	chr13	106751443	106754116	+	0	NA	Intergenic	Intergenic	-276132	NR_034119	728192	Hs.559194	NR_034119		LINC00460	-	long intergenic non-protein coding RNA 460	ncRNA
276	chr5	115254699	115260104	+	0	NA	Intergenic	LTR16A|LTR|ERVL	-40750	NM_173800	206338	Hs.98288	NM_173800	ENSG00000172901	LVRN	APQ|AQPEP|TAQPEP	laeverin	protein-coding
260	chr12	56841875	56844304	+	0	NA	TTS (NM_012064)	TTS (NM_012064)	160	NM_001330295	8914	Hs.118631	NM_003920	ENSG00000111602	TIMELESS	TIM|TIM1|hTIM	timeless circadian regulator	protein-coding
12	chr17	36606755	36612457	+	0	NA	intron (NM_001199417, intron 1 of 23)	intron (NM_001199417, intron 1 of 23)	24886	NM_001199417	57636	Hs.374446	NM_020876	ENSG00000275832	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding
869	chr17	74494486	74498865	+	0	NA	intron (NM_024599, intron 1 of 18)	intron (NM_024599, intron 1 of 18)	834	NM_024599	79651	Hs.464157	NM_024599	ENSG00000129667	RHBDF2	RHBDL5|RHBDL6|TEC|TOC|TOCG|iRhom2	rhomboid 5 homolog 2	protein-coding
831	chr17	46619104	46621890	+	0	NA	exon (NM_002145, exon 2 of 2)	exon (NM_002145, exon 2 of 2)	-1216	NR_102279	100874362	Hs.171806	NR_102279	ENSG00000230148	HOXB-AS1	-	HOXB cluster antisense RNA 1	ncRNA
490	chr1	32597963	32600905	+	0	NA	intron (NM_012316, intron 1 of 13)	AluSx1|SINE|Alu	25790	NM_012316	23633	Hs.470588	NM_012316	ENSG00000025800	KPNA6	IPOA7|KPNA7	karyopherin subunit alpha 6	protein-coding
42	chr19	1257280	1277532	+	0	NA	TTS (NR_027271)	TTS (NR_027271)	-1859	NM_001300815	1153	Hs.618145	NM_001280	ENSG00000099622	CIRBP	CIRP	cold inducible RNA binding protein	protein-coding
287	chr2	112640265	112643262	+	0	NA	promoter-TSS (NM_022662)	promoter-TSS (NM_022662)	-22	NM_022662	64682	Hs.436527	NM_022662	ENSG00000153107	ANAPC1	APC1|MCPR|TSG24	anaphase promoting complex subunit 1	protein-coding
250	chr9	75757030	75760413	+	0	NA	Intergenic	Intergenic	-7926	NM_000700	301	Hs.494173	NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
883	chr3	127840800	127844095	+	0	NA	exon (NM_003707, exon 1 of 11)	exon (NM_003707, exon 1 of 11)	224	NM_003707	8607	Hs.272822	NM_003707	ENSG00000175792	RUVBL1	ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A	RuvB like AAA ATPase 1	protein-coding
192	chr5	137798526	137802890	+	0	NA	promoter-TSS (NM_001964)	promoter-TSS (NM_001964)	-473	NM_001964	1958	Hs.326035	NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
976	chr19	50368253	50371717	+	0	NA	intron (NM_007254, intron 2 of 16)	intron (NM_007254, intron 2 of 16)	837	NM_007254	11284	Hs.78016	NM_007254	ENSG00000039650	PNKP	AOA4|EIEE10|MCSZ|PNK	polynucleotide kinase 3'-phosphatase	protein-coding
491	chr6	151376727	151393700	+	0	NA	intron (NM_001350492, intron 26 of 27)	intron (NM_001350492, intron 26 of 27)	57069	NM_001350490	25902	Hs.591343	NM_015440	ENSG00000120254	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like	protein-coding
360	chr3	5026525	5030184	+	0	NA	Intergenic	Intergenic	-6708	NR_125916	100507582	Hs.434505	NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
988	chr13	49106135	49108611	+	0	NA	promoter-TSS (NM_001286830)	promoter-TSS (NM_001286830)	19	NM_001268	1102	Hs.652712	NM_001268	ENSG00000136161	RCBTB2	CHC1L|RLG	RCC1 and BTB domain containing protein 2	protein-coding
109	chr5	141701987	141708768	+	0	NA	promoter-TSS (NM_030964)	promoter-TSS (NM_030964)	519	NR_120664	101926941	Hs.658945	NR_120664	ENSG00000231185	SPRY4-AS1	THCAT68	SPRY4 antisense RNA 1	ncRNA
41	chr12	62859412	62862053	+	0	NA	5' UTR (NM_001278471, exon 1 of 34)	5' UTR (NM_001278471, exon 1 of 34)	135	NM_001278472	23041	Hs.389378	NM_015026	ENSG00000061987	MON2	-	MON2 homolog, regulator of endosome-to-Golgi trafficking	protein-coding
803	chr7	138718763	138722615	+	0	NA	promoter-TSS (NM_080660)	promoter-TSS (NM_080660)	86	NM_080660	92092	Hs.512833	NM_080660	ENSG00000146858	ZC3HAV1L	C7orf39	zinc finger CCCH-type containing, antiviral 1 like	protein-coding
461	chr10	97434265	97436621	+	0	NA	intron (NM_001143973, intron 9 of 9)	intron (NM_001143973, intron 9 of 9)	18457	NM_001143973	26123	Hs.438991	NM_015631	ENSG00000119977	TCTN3	C10orf61|JBTS18|OFD4|TECT3	tectonic family member 3	protein-coding
322	chr16	75017518	75020467	+	0	NA	promoter-TSS (NM_001324171)	promoter-TSS (NM_001324171)	25	NM_030581	79726	Hs.280951	NM_030581	ENSG00000103091	WDR59	CDW12|FP977|p90-120	WD repeat domain 59	protein-coding
484	chr6	27144582	27146263	+	0	NA	Intergenic	CpG	30017	NR_036096	100422934		NR_036096	ENSG00000265565	MIR3143	mir-3143	microRNA 3143	ncRNA
443	chr12	95495859	95498275	+	0	NA	intron (NM_018351, intron 14 of 20)	intron (NM_018351, intron 14 of 20)	-29663	NM_001032287	7181	Hs.108301	NM_003297	ENSG00000120798	NR2C1	TR2	nuclear receptor subfamily 2 group C member 1	protein-coding
823	chr18	68028614	68054513	+	0	NA	Intergenic	Intergenic	10264	NR_110764	101060542	Hs.586967	NR_110764	ENSG00000266278	LINC01910	-	long intergenic non-protein coding RNA 1910	ncRNA
523	chr5	138058760	138062628	+	0	NA	Intergenic	Intergenic	28304	NR_134245	105379194	Hs.445981	NR_134244	ENSG00000253404	LOC105379194	-	uncharacterized LOC105379194	ncRNA
144	chr5	137088385	137091661	+	0	NA	promoter-TSS (NM_006805)	promoter-TSS (NM_006805)	16	NM_006805	10949	Hs.96996	NM_006805	ENSG00000177733	HNRNPA0	HNRPA0	heterogeneous nuclear ribonucleoprotein A0	protein-coding
252	chr17	73778565	73782711	+	0	NA	promoter-TSS (NR_039892)	promoter-TSS (NR_039892)	50	NR_039892	100616282		NR_039892	ENSG00000283853	MIR4738	-	microRNA 4738	ncRNA
753	chr3	114325896	114328628	+	0	NA	intron (NM_001348803, intron 6 of 13)	MER5A|DNA|hAT-Charlie	15791	NM_001164347	26137	Hs.202577	NM_015642	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|PRIMS|ZNF288	zinc finger and BTB domain containing 20	protein-coding
17	chr14	23539030	23542664	+	0	NA	promoter-TSS (NM_001164817)	promoter-TSS (NM_001164817)	-68	NM_001164817	22985	Hs.124490	NM_014977	ENSG00000100813	ACIN1	ACINUS|ACN|fSAP152	apoptotic chromatin condensation inducer 1	protein-coding
896	chr10	101688701	101694631	+	0	NA	promoter-TSS (NM_001318326)	promoter-TSS (NM_001318326)	-913	NM_001318326	23268	Hs.500771	NM_015221	ENSG00000107554	DNMBP	ARHGEF36|TUBA	dynamin binding protein	protein-coding
245	chr10	28346810	28351728	+	0	NA	intron (NM_001318170, intron 13 of 16)	intron (NM_001318170, intron 13 of 16)	13038	NR_132973	106635548		NR_132973		SNORD130	-	small nucleolar RNA, C/D box 130	snoRNA
130	chr11	94821512	94827748	+	0	NA	intron (NM_015036, intron 1 of 1)	intron (NM_015036, intron 1 of 1)	1656	NM_015036	23052	Hs.167115	NM_015036	ENSG00000149218	ENDOD1	-	endonuclease domain containing 1	protein-coding
28	chr21	43296578	43300744	+	0	NA	intron (NM_022115, intron 3 of 30)	intron (NM_022115, intron 3 of 30)	930	NM_022115	63977	Hs.473893	NM_022115	ENSG00000141956	PRDM15	C21orf83|PFM15|ZNF298	PR/SET domain 15	protein-coding
214	chr3	185502404	185506565	+	0	NA	intron (NM_001007225, intron 2 of 14)	LTR7|LTR|ERV1	-18792	NR_049838	100847078		NR_049838	ENSG00000265470	MIR548AQ	-	microRNA 548aq	ncRNA
851	chr2	232645149	232647718	+	0	NA	promoter-TSS (NR_110994)	promoter-TSS (NR_110994)	52	NM_001282951	64708	Hs.335061	NM_022730	ENSG00000144524	COPS7B	CSN7B|SGN7b	COP9 signalosome subunit 7B	protein-coding
217	chr19	4722227	4726884	+	0	NA	promoter-TSS (NM_139159)	promoter-TSS (NM_139159)	-700	NM_139159	91039	Hs.515081	NM_139159	ENSG00000142002	DPP9	DP9|DPLP9|DPRP-2|DPRP2	dipeptidyl peptidase 9	protein-coding
222	chr8	145701014	145705471	+	0	NA	promoter-TSS (NM_032902)	promoter-TSS (NM_032902)	-123	NM_001329443	84988	Hs.521937	NM_032902	ENSG00000160972	PPP1R16A	MYPT3	protein phosphatase 1 regulatory subunit 16A	protein-coding
425	chr5	137512727	137516603	+	0	NA	promoter-TSS (NM_001164326)	promoter-TSS (NM_001164326)	248	NM_005733	10112	Hs.718626	NM_005733	ENSG00000112984	KIF20A	MKLP2|RAB6KIFL	kinesin family member 20A	protein-coding
961	chr7	129482519	129500837	+	0	NA	intron (NM_182697, intron 3 of 4)	intron (NM_182697, intron 3 of 4)	-76824	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
726	chr15	85900168	85901951	+	0	NA	Intergenic	Intergenic	-22768	NR_106993	102465803		NR_106993	ENSG00000284160	MIR7706	hsa-mir-7706	microRNA 7706	ncRNA
715	chr17	79867877	79871663	+	0	NA	promoter-TSS (NM_001256433)	promoter-TSS (NM_001256433)	-417	NM_001256434	5833	Hs.569843	NM_002861	ENSG00000185813	PCYT2	ET	phosphate cytidylyltransferase 2, ethanolamine	protein-coding
655	chr1	28694716	28698043	+	0	NA	intron (NM_001350161, intron 1 of 14)	CpG	314	NM_001048183	65979	Hs.225641	NM_023923	ENSG00000204138	PHACTR4	PPP1R124	phosphatase and actin regulator 4	protein-coding
801	chr15	93440481	93451758	+	0	NA	intron (NM_001042572, intron 2 of 12)	intron (NM_001042572, intron 2 of 12)	-1510	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
449	chr6	30649657	30659312	+	0	NA	5' UTR (NM_133471, exon 1 of 3)	5' UTR (NM_133471, exon 1 of 3)	609	NM_001134870	170954	Hs.101150	NM_133471	ENSG00000146112	PPP1R18	HKMT1098|KIAA1949	protein phosphatase 1 regulatory subunit 18	protein-coding
218	chr19	1019748	1022627	+	0	NA	promoter-TSS (NR_125730).7	promoter-TSS (NR_125730).7	-46	NM_033420	91304	Hs.515003	NM_033420	ENSG00000182087	TMEM259	ASBABP1|C19orf6|MBRL|MEMBRALIN|R32184_3	transmembrane protein 259	protein-coding
611	chr10	3802854	3806636	+	0	NA	Intergenic	Intergenic	22728	NM_001160125	1316	Hs.4055	NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	Kruppel like factor 6	protein-coding
397	chr19	13884703	13886661	+	0	NA	TTS (NR_138051)	TTS (NR_138051)	425	NM_014047	28974	Hs.231616	NM_014047	ENSG00000104979	C19orf53	HSPC023|LYDG10	chromosome 19 open reading frame 53	protein-coding
309	chr6	133928710	133933525	+	0	NA	intron (NR_109982, intron 4 of 8)	L2a|LINE|L2	-211168	NR_027030	154089	Hs.126165	NR_027030		LINC01312	-	long intergenic non-protein coding RNA 1312	ncRNA
383	chr16	74609874	74615533	+	0	NA	intron (NM_001145667, intron 1 of 25)	intron (NM_001145667, intron 1 of 25)	28339	NM_001145667	2734	Hs.109731	NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
887	chr3	127793071	127795438	+	0	NA	promoter-TSS (NR_046645)	promoter-TSS (NR_046645)	-399	NR_046645	100874089	Hs.581603	NR_046645	ENSG00000239608	RUVBL1-AS1	-	RUVBL1 antisense RNA 1	ncRNA
107	chr1	199239826	199244093	+	0	NA	intron (NR_147896, intron 3 of 3)	intron (NR_147896, intron 3 of 3)	124233	NR_147896	400800	Hs.369324	NR_147896	ENSG00000231718	LOC400800	-	uncharacterized LOC400800	ncRNA
92	chr15	58758143	58764181	+	0	NA	intron (NR_120338, intron 2 of 2)	intron (NR_120338, intron 2 of 2)	29772	NR_120338	101928694	Hs.655781	NR_120338	ENSG00000259293	LIPC-AS1	-	LIPC antisense RNA 1	ncRNA
65	chr15	67367091	67370635	+	0	NA	intron (NM_005902, intron 1 of 8)	intron (NM_005902, intron 1 of 8)	10668	NM_005902	4088	Hs.727986	NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3	SMAD family member 3	protein-coding
123	chr1	227504242	227509034	+	0	NA	promoter-TSS (NM_014826)	promoter-TSS (NM_014826)	-812	NM_014826	8476	Hs.35433	NM_003607	ENSG00000143776	CDC42BPA	MRCK|MRCKA|PK428	CDC42 binding protein kinase alpha	protein-coding
374	chr6	26117690	26127943	+	0	NA	TTS (NM_003526)	TTS (NM_003526)	1316	NM_003526	8347	Hs.658713	NM_003526	ENSG00000180596	HIST1H2BC	H2B.1|H2B/l|H2BFL|dJ221C16.3	histone cluster 1 H2B family member c	protein-coding
215	chr13	73695116	73698515	+	0	NA	Intergenic	AluY|SINE|Alu	63885	NM_001730	688	Hs.508234	NM_001730	ENSG00000102554	KLF5	BTEB2|CKLF|IKLF	Kruppel like factor 5	protein-coding
389	chr4	77868938	77873222	+	0	NA	exon (NM_018243, exon 1 of 10)	exon (NM_018243, exon 1 of 10)	213	NM_018243	55752	Hs.128199	NM_018243	ENSG00000138758	SEPT11	-	septin 11	protein-coding
412	chr9	98267510	98274724	+	0	NA	promoter-TSS (NM_001354918)	promoter-TSS (NM_001354918)	-286	NR_149061	5727	Hs.494538	NM_000264	ENSG00000185920	PTCH1	BCNS|NBCCS|PTC|PTC1|PTCH	patched 1	protein-coding
884	chr15	40544072	40546683	+	0	NA	promoter-TSS (NM_001039905)	promoter-TSS (NM_001039905)	-2	NM_001276717	56924	Hs.732375	NM_020168	ENSG00000137843	PAK6	PAK5	p21 (RAC1) activated kinase 6	protein-coding
595	chr1	210000202	210002682	+	0	NA	exon (NM_014388, exon 1 of 12)	exon (NM_014388, exon 1 of 12)	130	NM_014388	27042	Hs.194754	NM_014388	ENSG00000117597	UTP25	C1orf107|DEF|DIEXF|DJ434O14.5	UTP25, small subunit processor component	protein-coding
224	chr2	220092309	220095997	+	0	NA	promoter-TSS (NM_001042410)	promoter-TSS (NM_001042410)	257	NR_104255	79065	Hs.323363	NM_024085	ENSG00000198925	ATG9A	APG9L1|MGD3208|mATG9	autophagy related 9A	protein-coding
399	chr17	7139996	7147811	+	0	NA	3' UTR (NM_007278, exon 4 of 4)	3' UTR (NM_007278, exon 4 of 4)	-1078	NM_001284517	79142	Hs.644724	NM_024297	ENSG00000040633	PHF23	hJUNE-1b	PHD finger protein 23	protein-coding
10	chr2	111434242	111437565	+	0	NA	promoter-TSS (NM_001278616)	promoter-TSS (NM_001278616)	-219	NM_001278616	699	Hs.469649	NM_004336	ENSG00000169679	BUB1	BUB1A|BUB1L|hBUB1	BUB1 mitotic checkpoint serine/threonine kinase	protein-coding
979	chr3	93698270	93700419	+	0	NA	intron (NM_144996, intron 1 of 7)	CpG	361	NR_033427	200894	Hs.533086	NM_144996	ENSG00000169379	ARL13B	ARL2L1|JBTS8	ADP ribosylation factor like GTPase 13B	protein-coding
943	chr9	131900048	131906722	+	0	NA	intron (NM_178000, intron 8 of 9)	intron (NM_178000, intron 8 of 9)	29418	NM_001193397	5524	Hs.400740	NM_021131	ENSG00000119383	PTPA	PP2A|PPP2R4|PR53	protein phosphatase 2 phosphatase activator	protein-coding
876	chr1	45986171	45989718	+	0	NA	promoter-TSS (NM_181697)	promoter-TSS (NM_181697)	-334	NM_181697	5052	Hs.180909	NM_002574	ENSG00000117450	PRDX1	MSP23|NKEF-A|NKEFA|PAG|PAGA|PAGB|PRX1|PRXI|TDPX2	peroxiredoxin 1	protein-coding
545	chr8	126224028	126234849	+	0	NA	intron (NM_173685, intron 5 of 7)	Charlie19a|DNA|hAT-Charlie	125373	NR_146192	286053	Hs.388297	NM_173685	ENSG00000156831	NSMCE2	C8orf36|MMS21|NSE2|ZMIZ7	NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase	protein-coding
970	chr7	106409268	106418149	+	0	NA	Intergenic	Intergenic	-92015	NM_001282427	5294	Hs.32942	NM_002649	ENSG00000105851	PIK3CG	PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding
685	chr5	176729343	176732270	+	0	NA	promoter-TSS (NM_001271828)	promoter-TSS (NM_001271828)	43	NM_013237	27166	Hs.744904	NM_013237	ENSG00000169230	PRELID1	CGI-106|PRELI|PX19|SBBI12	PRELI domain containing 1	protein-coding
721	chr6	158402240	158404962	+	0	NA	intron (NM_003898, intron 1 of 26)	intron (NM_003898, intron 1 of 26)	713	NM_003898	8871	Hs.434494	NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
632	chr19	41075282	41077044	+	0	NA	intron (NM_020971, intron 32 of 35)	intron (NM_020971, intron 32 of 35)	-6594	NM_138392	92799	Hs.26506	NM_138392	ENSG00000160410	SHKBP1	PP203|Sb1	SH3KBP1 binding protein 1	protein-coding
257	chr9	130688360	130696413	+	0	NA	intron (NM_001135219, intron 1 of 9)	MIRb|SINE|MIR	690	NM_001135219	138429	Hs.734928	NM_173492	ENSG00000167103	PIP5KL1	PIPKH	phosphatidylinositol-4-phosphate 5-kinase like 1	protein-coding
487	chr5	54521309	54524616	+	0	NA	exon (NM_001190787, exon 1 of 7)	exon (NM_001190787, exon 1 of 7)	181	NM_001190787	345643	Hs.394578	NM_001190787	ENSG00000234602	MCIDAS	IDAS|MCI|MCIN	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding
61	chr6	27123975	27126349	+	0	NA	Intergenic	Intergenic	9757	NR_036096	100422934		NR_036096	ENSG00000265565	MIR3143	mir-3143	microRNA 3143	ncRNA
248	chr21	37430755	37434886	+	0	NA	promoter-TSS (NM_001007261)	promoter-TSS (NM_001007261)	-158	NM_001007261	54093	Hs.606200	NM_017438	ENSG00000185917	SETD4	C21orf18|C21orf27	SET domain containing 4	protein-coding
870	chr9	130952422	130956591	+	0	NA	promoter-TSS (NM_001131017)	promoter-TSS (NM_001131017)	-123	NM_001257975	25792	Hs.212395	NM_012127	ENSG00000148337	CIZ1	LSFR1|NP94|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding
263	chr11	10686723	10694344	+	0	NA	intron (NM_130385, intron 1 of 20)	intron (NM_130385, intron 1 of 20)	-16685	NM_001098579	10335	Hs.501898	NM_130385	ENSG00000072952	MRVI1	IRAG|JAW1L	murine retrovirus integration site 1 homolog	protein-coding
479	chr16	66582472	66587396	+	0	NA	promoter-TSS (NR_073520)	promoter-TSS (NR_073520)	-619	NR_073520	7084	Hs.512619	NM_004614	ENSG00000166548	TK2	MTDPS2|MTTK|PEOB3|SCA31	thymidine kinase 2, mitochondrial	protein-coding
361	chr8	22550854	22553453	+	0	NA	Intergenic	CpG-25499	-1338	NM_004430	1960	Hs.534313	NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
558	chr19	3711667	3714283	+	0	NA	intron (NM_001267560, intron 1 of 20)	AluJo|SINE|Alu	4640	NM_001267560	27134	Hs.25527	NM_014428	ENSG00000105289	TJP3	ZO-3|ZO3	tight junction protein 3	protein-coding
594	chr19	47633137	47635457	+	0	NA	non-coding (NR_027280, exon 1 of 9)	non-coding (NR_027280, exon 1 of 9)	182	NR_027280	10055	Hs.515500	NM_005500	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
531	chr5	16888802	16891167	+	0	NA	intron (NM_012334, intron 1 of 40)	intron (NM_012334, intron 1 of 40)	46401	NM_012334	4651	Hs.481720	NM_012334	ENSG00000145555	MYO10	-	myosin X	protein-coding
967	chr17	75360172	75363085	+	0	NA	intron (NM_006640, intron 1 of 10)	L3|LINE|CR1	-7644	NM_001113493	10801	Hs.440932	NM_006640	ENSG00000184640	SEPT9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SINT1|SeptD1	septin 9	protein-coding
821	chr19	12892068	12908201	+	0	NA	Intergenic	Intergenic	-2176	NM_002229	3726	Hs.25292	NM_002229	ENSG00000171223	JUNB	AP-1	JunB proto-oncogene, AP-1 transcription factor subunit	protein-coding
680	chr6	159162583	159166031	+	0	NA	intron (NM_001009991, intron 10 of 16)	L1MEg|LINE|L1	21478	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
310	chr17	79281835	79284492	+	0	NA	promoter-TSS (NR_038080)	promoter-TSS (NR_038080)	-115	NR_038080	284185	Hs.631762	NM_178519		LINC00482	C17orf55	long intergenic non-protein coding RNA 482	ncRNA
518	chr6	53656342	53661996	+	0	NA	promoter-TSS (NM_018214)	promoter-TSS (NM_018214)	-609	NM_018214	55227	Hs.606493	NM_018214	ENSG00000137269	LRRC1	LANO|dJ523E19.1	leucine rich repeat containing 1	protein-coding
579	chr3	45132365	45136259	+	0	NA	intron (NM_022842, intron 6 of 8)	intron (NM_022842, intron 6 of 8)	53602	NM_178181	64866	Hs.476093	NM_022842	ENSG00000163814	CDCP1	CD318|SIMA135|TRASK	CUB domain containing protein 1	protein-coding
750	chr5	5144484	5147677	+	0	NA	intron (NM_139056, intron 2 of 22)	intron (NM_139056, intron 2 of 22)	5637	NM_139056	170690	Hs.661915	NM_139056	ENSG00000145536	ADAMTS16	ADAMTS16s	ADAM metallopeptidase with thrombospondin type 1 motif 16	protein-coding
458	chr12	57027183	57031393	+	0	NA	intron (NM_001351156, intron 1 of 30)	intron (NM_001351156, intron 1 of 30)	875	NM_013449	11176	Hs.314263	NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
899	chr15	74687905	74691133	+	0	NA	Intergenic	Intergenic	14254	NR_106941	102465530		NR_106941	ENSG00000277391	MIR6881	hsa-mir-6881	microRNA 6881	ncRNA
683	chr1	150531218	150537667	+	0	NA	intron (NR_104133, intron 3 of 3)	intron (NR_104133, intron 3 of 3)	10037	NR_036211	100422997		NR_036211	ENSG00000264553	MIR4257	-	microRNA 4257	ncRNA
184	chr19	39563345	39565818	+	0	NA	Intergenic	Intergenic	-10364	NM_001004318	390928	Hs.448934	NM_001004318	ENSG00000183760	ACP7	PAPL|PAPL1	acid phosphatase 7, tartrate resistant (putative)	protein-coding
200	chr3	48227835	48231376	+	0	NA	5' UTR (NM_201567, exon 1 of 14)	5' UTR (NM_201567, exon 1 of 14)	196	NM_201567	993	Hs.437705	NM_001789	ENSG00000164045	CDC25A	CDC25A2	cell division cycle 25A	protein-coding
693	chr9	140445093	140448047	+	0	NA	exon (NM_032477, exon 2 of 2)	exon (NM_032477, exon 2 of 2)	261	NM_032477	64975	Hs.44017	NM_032477	ENSG00000182154	MRPL41	BMRP|MRP-L27|MRPL27|PIG3|RPML27	mitochondrial ribosomal protein L41	protein-coding
327	chr10	75010836	75014206	+	0	NA	promoter-TSS (NR_134459)	promoter-TSS (NR_134459)	22	NR_134458	414245	Hs.568860	NR_038373	ENSG00000227540	DNAJC9-AS1	C10orf103|bA537A6.3	DNAJC9 antisense RNA 1	ncRNA
504	chr20	48290193	48297703	+	0	NA	intron (NM_004776, intron 1 of 8)	intron (NM_004776, intron 1 of 8)	36473	NM_004776	9334	Hs.370487	NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
183	chr14	77785457	77789457	+	0	NA	promoter-TSS (NM_013382)	promoter-TSS (NM_013382)	227	NM_001312660	2954	Hs.655292	NM_001513	ENSG00000100577	GSTZ1	GSTZ1-1|MAAI|MAAID|MAI	glutathione S-transferase zeta 1	protein-coding
135	chr12	123919296	123921953	+	0	NA	intron (NM_145058, intron 1 of 3)	CpG	656	NM_145058	196383	Hs.488173	NM_145058	ENSG00000150977	RILPL2	RLP2	Rab interacting lysosomal protein like 2	protein-coding
104	chr11	63931825	63935240	+	0	NA	promoter-TSS (NM_014067)	promoter-TSS (NM_014067)	53	NM_014067	28992	Hs.602898	NM_014067	ENSG00000133315	MACROD1	LRP16	MACRO domain containing 1	protein-coding
955	chr7	100025099	100029397	+	0	NA	promoter-TSS (NM_017984)	promoter-TSS (NM_017984)	-6	NM_019606	56257	Hs.178011	NM_019606	ENSG00000146834	MEPCE	BCDIN3	methylphosphate capping enzyme	protein-coding
395	chr6	151400863	151405382	+	0	NA	intron (NR_146719, intron 27 of 28)	intron (NR_146719, intron 27 of 28)	74978	NM_001350490	25902	Hs.591343	NM_015440	ENSG00000120254	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like	protein-coding
660	chr19	923856	927405	+	0	NA	promoter-TSS (NM_005224)	promoter-TSS (NM_005224)	-407	NM_005224	1820	Hs.501296	NM_005224	ENSG00000116017	ARID3A	BRIGHT|DRIL1|DRIL3|E2FBP1	AT-rich interaction domain 3A	protein-coding
417	chr7	22859730	22863628	+	0	NA	intron (NM_019059, intron 1 of 2)	MIR|SINE|MIR	792	NM_019059	54543	Hs.112318	NM_019059	ENSG00000196683	TOMM7	TOM7	translocase of outer mitochondrial membrane 7	protein-coding
942	chr12	116938837	116948512	+	0	NA	Intergenic	MIRb|SINE|MIR	-27553	NR_027345	100287569	Hs.441601	NM_207436	ENSG00000196668	LINC00173	NCRNA00173	long intergenic non-protein coding RNA 173	ncRNA
746	chr7	66077341	66079295	+	0	NA	Intergenic	L1ME4a|LINE|L1	-15550	NM_001167961	154881	Hs.546627	NM_153033	ENSG00000243335	KCTD7	CLN14|EPM3	potassium channel tetramerization domain containing 7	protein-coding
832	chr19	46193670	46197413	+	0	NA	promoter-TSS (NM_177542)	promoter-TSS (NM_177542)	33	NM_004597	6633	Hs.515472	NM_004597	ENSG00000125743	SNRPD2	SMD2|SNRPD1|Sm-D2	small nuclear ribonucleoprotein D2 polypeptide	protein-coding
945	chr16	70321282	70324512	+	0	NA	promoter-TSS (NM_001257174)	promoter-TSS (NM_001257174)	515	NM_001605	16	Hs.315137	NM_001605	ENSG00000090861	AARS	CMT2N|EIEE29	alanyl-tRNA synthetase	protein-coding
886	chr10	114118528	114123435	+	0	NA	Intergenic	Intergenic	-4628	NR_028134	390003	Hs.534691	NR_028134	ENSG00000243316	GUCY2GP	GUCY2G	guanylate cyclase 2G, pseudogene	pseudo
676	chr9	32523295	32527673	+	0	NA	intron (NM_014314, intron 1 of 17)	intron (NM_014314, intron 1 of 17)	838	NM_014314	23586	Hs.190622	NM_014314	ENSG00000107201	DDX58	RIG-I|RIGI|RLR-1|SGMRT2	DExD/H-box helicase 58	protein-coding
190	chr6	26320713	26324270	+	0	NA	Intergenic	Intergenic	-36764	NM_003543	8365	Hs.591790	NM_003543	ENSG00000158406	HIST1H4H	H4/h|H4FH	histone cluster 1 H4 family member h	protein-coding
687	chr19	48773218	48778000	+	0	NA	intron (NM_153608, intron 3 of 5)	AluSx|SINE|Alu	1107	NM_001331098	163071	Hs.511883	NM_153608	ENSG00000178150	ZNF114	-	zinc finger protein 114	protein-coding
89	chr11	693507	697050	+	0	NA	promoter-TSS (NM_001276274)	promoter-TSS (NM_001276274)	-313	NM_174940	283232	Hs.448664	NM_174940	ENSG00000177042	TMEM80	-	transmembrane protein 80	protein-coding
90	chr2	227629899	227633588	+	0	NA	intron (NM_005544, intron 1 of 1)	intron (NM_005544, intron 1 of 1)	31763	NM_005544	3667	Hs.471508	NM_005544	ENSG00000169047	IRS1	HIRS-1	insulin receptor substrate 1	protein-coding
795	chr18	47765192	47769903	+	0	NA	intron (NM_145020, intron 6 of 7)	LTR69|LTR|ERVL	25345	NM_145020	220136	Hs.658630	NM_145020	ENSG00000172361	CFAP53	CCDC11|HTX6	cilia and flagella associated protein 53	protein-coding
150	chr12	56692134	56695636	+	0	NA	intron (NM_004077, intron 1 of 10)	CpG	290	NM_004077	1431	Hs.743252	NM_004077	ENSG00000062485	CS	-	citrate synthase	protein-coding
73	chr2	46164805	46167973	+	0	NA	intron (NM_005400, intron 2 of 14)	intron (NM_005400, intron 2 of 14)	287346	NM_005400	5581	Hs.580351	NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
495	chr4	96429840	96433497	+	0	NA	intron (NM_003728, intron 1 of 15)	intron (NM_003728, intron 1 of 15)	38693	NM_003728	8633	Hs.388565	NM_003728	ENSG00000182168	UNC5C	UNC5H3	unc-5 netrin receptor C	protein-coding
420	chr1	245024515	245029621	+	0	NA	exon (NM_031844, exon 1 of 14)	exon (NM_031844, exon 1 of 14)	759	NM_004501	3192	Hs.106212	NM_004501	ENSG00000153187	HNRNPU	EIEE54|GRIP120|HNRNPU-AS1|HNRPU|SAF-A|SAFA|U21.1|hnRNP U|pp120	heterogeneous nuclear ribonucleoprotein U	protein-coding
206	chr8	144639255	144642037	+	0	NA	promoter-TSS (NR_147504)	promoter-TSS (NR_147504)	169	NM_024736	79792	Hs.118983	NM_024736	ENSG00000104518	GSDMD	DF5L|DFNA5L|FKSG10|GSDMDC1	gasdermin D	protein-coding
132	chr21	32653858	32658422	+	0	NA	intron (NM_001353694, intron 2 of 27)	AluSx|SINE|Alu	60529	NM_001353686	7074	Hs.517228	NM_003253	ENSG00000156299	TIAM1	TIAM-1	T cell lymphoma invasion and metastasis 1	protein-coding
448	chr6	30708880	30714178	+	0	NA	promoter-TSS (NM_001318875)	promoter-TSS (NM_001318875)	789	NR_149095	105379695	Hs.730861	NR_149095	ENSG00000272273	IER3-AS1	-	IER3 antisense RNA 1	ncRNA
189	chr3	48281424	48284330	+	0	NA	intron (NM_016089, intron 1 of 3)	intron (NM_016089, intron 1 of 3)	281	NM_016089	51385	Hs.172602	NM_016089	ENSG00000164048	ZNF589	SZF1	zinc finger protein 589	protein-coding
259	chr7	6046985	6050293	+	0	NA	promoter-TSS (NM_001322003)	promoter-TSS (NM_001322003)	20	NM_001322009	5395	Hs.632637	NM_000535	ENSG00000122512	PMS2	HNPCC4|MLH4|PMS2CL|PMSL2	PMS1 homolog 2, mismatch repair system component	protein-coding
51	chr1	153916105	153919705	+	0	NA	intron (NM_014856, intron 1 of 27)	intron (NM_014856, intron 1 of 27)	1249	NM_014856	9909	Hs.744878	NM_014856	ENSG00000198837	DENND4B	KIAA0476	DENN domain containing 4B	protein-coding
627	chr2	227070293	227082573	+	0	NA	Intergenic	Intergenic	68923	NR_046102	646736	Hs.712836	NR_046102		LOC646736	-	uncharacterized LOC646736	ncRNA
446	chr1	27717795	27721174	+	0	NA	intron (NM_005281, intron 1 of 1)	intron (NM_005281, intron 1 of 1)	336	NM_005281	2827	Hs.66542	NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
682	chr19	4722227	4726884	+	0	NA	promoter-TSS (NM_139159)	promoter-TSS (NM_139159)	-700	NM_139159	91039	Hs.515081	NM_139159	ENSG00000142002	DPP9	DP9|DPLP9|DPRP-2|DPRP2	dipeptidyl peptidase 9	protein-coding
835	chr8	141127498	141130466	+	0	NA	intron (NM_001321646, intron 16 of 21)	intron (NM_001321646, intron 16 of 21)	-18348	NR_144431	359809	Hs.26814	NR_144431	ENSG00000282164	PEG13	-	paternally expressed 13	ncRNA
935	chr20	33263003	33265501	+	0	NA	intron (NM_080476, intron 1 of 11)	intron (NM_080476, intron 1 of 11)	837	NM_080476	128869	Hs.253319	NM_080476	ENSG00000101464	PIGU	CDC91L1|GAB1	phosphatidylinositol glycan anchor biosynthesis class U	protein-coding
804	chr7	101512274	101515382	+	0	NA	intron (NM_181552, intron 1 of 23)	intron (NM_181552, intron 1 of 23)	52946	NM_181552	1523	Hs.191482	NM_001913	ENSG00000257923	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75	cut like homeobox 1	protein-coding
181	chr15	59574738	59578778	+	0	NA	intron (NM_004998, intron 1 of 27)	AluJo|SINE|Alu	77743	NM_033195	92483	Hs.307052	NM_033195	ENSG00000171989	LDHAL6B	LDH6B|LDHAL6|LDHL	lactate dehydrogenase A like 6B	protein-coding
629	chr13	111613803	111621273	+	0	NA	promoter-TSS (NR_126378)	promoter-TSS (NR_126378)	-836	NR_126378	104355135	Hs.649708	NR_126378		LINC00431	-	long intergenic non-protein coding RNA 431	ncRNA
628	chr2	227287256	227294908	+	0	NA	Intergenic	Charlie20a|DNA|hAT-Charlie	232427	NR_049887	100847053		NR_049887	ENSG00000263363	MIR5702	-	microRNA 5702	ncRNA
271	chr4	102055840	102090724	+	0	NA	intron (NM_000944, intron 2 of 13)	intron (NM_000944, intron 2 of 13)	88747	NR_107033	102465868		NR_107033	ENSG00000273882	MIR8066	hsa-mir-8066	microRNA 8066	ncRNA
387	chr7	89806136	89811843	+	0	NA	intron (NR_110029, intron 2 of 2)	intron (NR_110029, intron 2 of 2)	25300	NM_012449	26872	Hs.61635	NM_012449	ENSG00000164647	STEAP1	PRSS24|STEAP	STEAP family member 1	protein-coding
324	chr8	145637886	145643326	+	0	NA	intron (NM_130849, intron 3 of 11)	intron (NM_130849, intron 3 of 11)	1311	NM_017767	55630	Hs.521934	NM_017767	ENSG00000147804	SLC39A4	AEZ|AWMS2|ZIP4	solute carrier family 39 member 4	protein-coding
783	chr1	84717580	84721257	+	0	NA	Intergenic	MIRb|SINE|MIR	-44631	NM_001010971	148418	Hs.591445	NM_001010971	ENSG00000203943	SAMD13	HSD-41|HSD-42	sterile alpha motif domain containing 13	protein-coding
843	chr7	116227068	116232015	+	0	NA	intron (NR_120506, intron 2 of 4)	intron (NR_120506, intron 2 of 4)	25333	NR_120506	100996266	Hs.552122	NR_120506		LINC01510	-	long intergenic non-protein coding RNA 1510	ncRNA
170	chr10	101802358	101805136	+	0	NA	intron (NM_001308, intron 8 of 8)	intron (NM_001308, intron 8 of 8)	-34037	NM_015221	23268	Hs.500771	NM_015221	ENSG00000107554	DNMBP	ARHGEF36|TUBA	dynamin binding protein	protein-coding
556	chr1	45139294	45144910	+	0	NA	intron (NM_001145636, intron 1 of 11)	L2|LINE|L2	1708	NM_001145636	339541	Hs.173679	NM_001004307	ENSG00000198520	ARMH1	C1orf228|NCRNA00082|p40	armadillo-like helical domain containing 1	protein-coding
960	chr4	77379012	77382762	+	0	NA	intron (NM_020859, intron 1 of 10)	intron (NM_020859, intron 1 of 10)	24634	NM_020859	57619	Hs.683808	NM_020859	ENSG00000138771	SHROOM3	APXL3|MSTP013|SHRM|ShrmL	shroom family member 3	protein-coding
187	chr7	868826	874488	+	0	NA	promoter-TSS (NM_001130965)	promoter-TSS (NM_001130965)	-485	NM_001130965	23353	Hs.438072	NM_025154	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
825	chr7	148579363	148583392	+	0	NA	promoter-TSS (NM_001203247)	promoter-TSS (NM_001203247)	64	NM_001203247	2146	Hs.444082	NM_004456	ENSG00000106462	EZH2	ENX-1|ENX1|EZH2b|KMT6|KMT6A|WVS|WVS2	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding
19	chr12	123623596	123628518	+	0	NA	Intergenic	Intergenic	-31021	NM_001300801	57605	Hs.272759	NM_020845	ENSG00000090975	PITPNM2	NIR-3|NIR3|RDGB2|RDGBA2	phosphatidylinositol transfer protein membrane associated 2	protein-coding
786	chr11	116657558	116659914	+	0	NA	promoter-TSS (NM_001317086)	promoter-TSS (NM_001317086)	18	NM_003904	8882	Hs.7165	NM_003904	ENSG00000109917	ZPR1	ZNF259	ZPR1 zinc finger	protein-coding
301	chr1	84541752	84546431	+	0	NA	intron (NM_207578, intron 1 of 8)	CpG	433	NM_002731	5567	Hs.487325	NM_002731	ENSG00000142875	PRKACB	PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
305	chr14	68590319	68593959	+	0	NA	intron (NM_002877, intron 7 of 10)	intron (NM_002877, intron 7 of 10)	301830	NM_001321815	5890	Hs.172587	NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
483	chr16	3929602	3932337	+	0	NA	promoter-TSS (NM_001079846)	promoter-TSS (NM_001079846)	-848	NM_001079846	1387	Hs.459759	NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|RSTS|RSTS1	CREB binding protein	protein-coding
519	chr16	836896	840885	+	0	NA	promoter-TSS (NM_001324086)	promoter-TSS (NM_001324086)	268	NM_022092	63922	Hs.153850	NM_022092	ENSG00000127586	CHTF18	C16orf41|C321D2.2|C321D2.3|C321D2.4|CHL12|Ctf18|RUVBL	chromosome transmission fidelity factor 18	protein-coding
784	chr9	112238278	112241962	+	0	NA	intron (NM_001145368, intron 1 of 24)	intron (NM_001145368, intron 1 of 24)	20473	NM_002829	5774	Hs.436429	NM_002829	ENSG00000070159	PTPN3	PTP-H1|PTPH1	protein tyrosine phosphatase, non-receptor type 3	protein-coding
485	chr10	111967821	111971577	+	0	NA	promoter-TSS (NM_001008541)	promoter-TSS (NM_001008541)	-290	NM_001008541	4601	Hs.602078	NM_005962	ENSG00000119950	MXI1	MAD2|MXD2|MXI|bHLHc11	MAX interactor 1, dimerization protein	protein-coding
908	chr9	116171418	116174667	+	0	NA	promoter-TSS (NM_001278255)	promoter-TSS (NM_001278255)	-13	NM_017443	54107	Hs.108112	NM_017443	ENSG00000148229	POLE3	CHARAC17|CHRAC17|YBL1|p17	DNA polymerase epsilon 3, accessory subunit	protein-coding
351	chr14	105130850	105135065	+	0	NA	Intergenic	L1ME2|LINE|L1	-1062	NR_135293	101929634	Hs.532502	NR_135293	ENSG00000260792	LINC02280	-	long intergenic non-protein coding RNA 2280	ncRNA
39	chr3	48486532	48489510	+	0	NA	promoter-TSS (NM_001271023)	promoter-TSS (NM_001271023)	-93	NM_032166	84126	Hs.694840	NM_032166	ENSG00000164053	ATRIP	-	ATR interacting protein	protein-coding
917	chr1	224300619	224303596	+	0	NA	intron (NM_015176, intron 1 of 4)	CpG	318	NM_015176	23219	Hs.64691	NM_015176	ENSG00000143756	FBXO28	CENP-30|Fbx28	F-box protein 28	protein-coding
760	chr14	54444516	54448687	+	0	NA	Intergenic	Intergenic	-22992	NM_001347912	652	Hs.68879	NM_001202	ENSG00000125378	BMP4	BMP2B|BMP2B1|MCOPS6|OFC11|ZYME	bone morphogenetic protein 4	protein-coding
829	chr5	137798526	137802890	+	0	NA	promoter-TSS (NM_001964)	promoter-TSS (NM_001964)	-473	NM_001964	1958	Hs.326035	NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
681	chr20	52443751	52448101	+	0	NA	Intergenic	Intergenic	46322	NR_002189	391257	Hs.449977	NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
591	chr22	31363643	31368228	+	0	NA	non-coding (NR_110492, exon 1 of 4)	non-coding (NR_110492, exon 1 of 4)	738	NR_110492	55000	Hs.554829	NR_002323	ENSG00000253352	TUG1	LINC00080|NCRNA00080|TI-227H	taurine up-regulated 1 (non-protein coding)	ncRNA
492	chr1	84897180	84901775	+	0	NA	Intergenic	Intergenic	25443	NM_058248	58511	Hs.129142	NM_021233	ENSG00000137976	DNASE2B	DLAD	deoxyribonuclease 2 beta	protein-coding
58	chr1	43388169	43392232	+	0	NA	TTS (NM_006516)	TTS (NM_006516)	-34520	NR_033967	440584	Hs.260928	NR_033967	ENSG00000227533	SLC2A1-AS1	-	SLC2A1 antisense RNA 1	ncRNA
208	chr12	53288396	53291265	+	0	NA	Intergenic	Intergenic	9038	NM_002273	3856	Hs.533782	NM_002273	ENSG00000170421	KRT8	CARD2|CK-8|CK8|CYK8|K2C8|K8|KO	keratin 8	protein-coding
799	chr20	60638055	60642852	+	0	NA	TTS (NR_130463)	TTS (NR_130463)	413	NM_003185	6874	Hs.18857	NM_003185	ENSG00000130699	TAF4	TAF2C|TAF2C1|TAF4A|TAFII130|TAFII135	TATA-box binding protein associated factor 4	protein-coding
98	chr4	143639654	143644483	+	0	NA	intron (NM_003866, intron 2 of 26)	(TG)n|Simple_repeat|Simple_repeat	125620	NM_001101669	8821	Hs.176376	NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
427	chr7	150808540	150815358	+	0	NA	exon (NM_001308305, exon 1 of 9)	exon (NM_001308305, exon 1 of 9)	184	NM_001308305	116988	Hs.647075	NM_031946	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding
94	chr11	118926256	118929351	+	0	NA	5' UTR (NM_006389, exon 1 of 26)	5' UTR (NM_006389, exon 1 of 26)	154	NM_006389	10525	Hs.277704	NM_006389	ENSG00000149428	HYOU1	GRP-170|Grp170|HSP12A|ORP-150|ORP150	hypoxia up-regulated 1	protein-coding
157	chr7	73864947	73870789	+	0	NA	promoter-TSS (NM_005685)	promoter-TSS (NM_005685)	-252	NM_001199207	9569	Hs.647056	NM_005685	ENSG00000006704	GTF2IRD1	BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1	GTF2I repeat domain containing 1	protein-coding
470	chr12	69003403	69006915	+	0	NA	intron (NM_015646, intron 1 of 7)	CpG	540	NM_001251917	5908	Hs.369920	NM_015646	ENSG00000127314	RAP1B	K-REV|RAL1B	RAP1B, member of RAS oncogene family	protein-coding
939	chr19	18473892	18477787	+	0	NA	non-coding (NR_138029, exon 6 of 6)	non-coding (NR_138029, exon 6 of 6)	-20931	NM_004864	9518	Hs.616962	NM_004864	ENSG00000130513	GDF15	GDF-15|MIC-1|MIC1|NAG-1|PDF|PLAB|PTGFB	growth differentiation factor 15	protein-coding
18	chr16	67839297	67841166	+	0	NA	promoter-TSS (NM_001288994)	promoter-TSS (NM_001288994)	324	NM_001320239	57610	Hs.368569	NM_020850	ENSG00000141084	RANBP10	-	RAN binding protein 10	protein-coding
659	chr1	161014052	161017271	+	0	NA	promoter-TSS (NM_001276373)	promoter-TSS (NM_001276373)	108	NM_207005	7391	Hs.414880	NM_007122	ENSG00000158773	USF1	FCHL|FCHL1|HYPLIP1|MLTF|MLTFI|UEF|bHLHb11	upstream transcription factor 1	protein-coding
455	chr7	100080098	100082251	+	0	NA	promoter-TSS (NM_173564)	promoter-TSS (NM_173564)	-376	NM_173564	222950	Hs.320086	NM_173564	ENSG00000166924	NYAP1	C7orf51	neuronal tyrosine phosphorylated phosphoinositide-3-kinase adaptor 1	protein-coding
180	chr3	160281618	160285563	+	0	NA	promoter-TSS (NM_002268)	promoter-TSS (NM_002268)	-214	NM_002268	3840	Hs.467866	NM_002268	ENSG00000186432	KPNA4	IPOA3|QIP1|SRP3	karyopherin subunit alpha 4	protein-coding
450	chr8	54753672	54757125	+	0	NA	intron (NM_015941, intron 1 of 13)	intron (NM_015941, intron 1 of 13)	204	NM_213620	51606	Hs.491737	NM_015941	ENSG00000047249	ATP6V1H	CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13	ATPase H+ transporting V1 subunit H	protein-coding
691	chr17	2260179	2265219	+	0	NA	intron (NM_001098509, intron 2 of 22)	intron (NM_001098509, intron 2 of 22)	21891	NM_001346700	9905	Hs.513861	NM_014853	ENSG00000141258	SGSM2	RUTBC1	small G protein signaling modulator 2	protein-coding
341	chr1	213186063	213191220	+	0	NA	5' UTR (NM_001300755, exon 1 of 9)	5' UTR (NM_001300755, exon 1 of 9)	210	NM_001300755	90806	Hs.157078	NM_144567	ENSG00000174606	ANGEL2	Ccr4d|KIAA0759L	angel homolog 2	protein-coding
239	chr12	65922553	65935021	+	0	NA	intron (NR_120432, intron 4 of 4)	intron (NR_120432, intron 4 of 4)	22304	NR_135033	105369187	Hs.738044	NR_135033	ENSG00000250748	LOC105369187	-	uncharacterized LOC105369187	ncRNA
118	chr17	74729234	74735786	+	0	NA	promoter-TSS (NM_001242534)	promoter-TSS (NM_001242534)	120	NR_030366	693221		NR_030366	ENSG00000283805	MIR636	MIRN636|hsa-mir-636	microRNA 636	ncRNA
346	chr6	26194621	26208197	+	0	NA	Intergenic	AluSp|SINE|Alu	1622	NM_003522	8343	Hs.182137	NM_003522	ENSG00000277224	HIST1H2BF	H2B/g|H2BFG	histone cluster 1 H2B family member f	protein-coding
9	chr19	46008647	46013083	+	0	NA	5' UTR (NM_003370, exon 1 of 13)	5' UTR (NM_003370, exon 1 of 13)	177	NM_003370	7408	Hs.515469	NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
733	chr7	115897804	115902154	+	0	NA	Intergenic	Intergenic	26739	NR_130921	102724434	Hs.667624	NR_130921	ENSG00000237870	LOC102724434	-	uncharacterized LOC102724434	ncRNA
266	chr8	22101074	22104172	+	0	NA	promoter-TSS (NR_029714)	promoter-TSS (NR_029714)	4	NM_001722	661	Hs.148342	NM_001722	ENSG00000168495	POLR3D	BN51T|RPC4|RPC53|TSBN51	RNA polymerase III subunit D	protein-coding
163	chr12	53296225	53303332	+	0	NA	promoter-TSS (NM_002273)	promoter-TSS (NM_002273)	-910	NM_002273	3856	Hs.533782	NM_002273	ENSG00000170421	KRT8	CARD2|CK-8|CK8|CYK8|K2C8|K8|KO	keratin 8	protein-coding
524	chr11	57433554	57437718	+	0	NA	5' UTR (NM_015457, exon 1 of 12)	5' UTR (NM_015457, exon 1 of 12)	162	NM_015457	25921	Hs.27239	NM_015457	ENSG00000156599	ZDHHC5	DHHC5|ZNF375	zinc finger DHHC-type containing 5	protein-coding
776	chr17	16913055	16915631	+	0	NA	Intergenic	Intergenic	22700	NR_146886	105371562	Hs.579259	NR_146886	ENSG00000230969	LINC02090	-	long intergenic non-protein coding RNA 2090	ncRNA
53	chr22	50698088	50702293	+	0	NA	promoter-TSS (NM_001303252)	promoter-TSS (NM_001303252)	49	NM_001303252	6300	Hs.432642	NM_002969	ENSG00000188130	MAPK12	ERK-6|ERK3|ERK6|MAPK 12|P38GAMMA|PRKM12|SAPK-3|SAPK3	mitogen-activated protein kinase 12	protein-coding
54	chr12	6308620	6311955	+	0	NA	intron (NM_001769, intron 1 of 7)	CpG	805	NM_001769	928	Hs.114286	NM_001769	ENSG00000010278	CD9	BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29	CD9 molecule	protein-coding
668	chr20	48899671	48904229	+	0	NA	Intergenic	Intergenic	-7307	NR_034124	284751	Hs.282325	NM_001025463	ENSG00000203999	LINC01270	-	long intergenic non-protein coding RNA 1270	ncRNA
14	chr9	37902615	37905955	+	0	NA	promoter-TSS (NM_033412)	promoter-TSS (NM_033412)	65	NM_033412	92014	Hs.634120	NM_033412	ENSG00000122696	SLC25A51	CG7943|MCART1	solute carrier family 25 member 51	protein-coding
938	chr2	170428818	170431052	+	0	NA	5' UTR (NM_001322046, exon 1 of 15)	5' UTR (NM_001322046, exon 1 of 15)	496	NM_001281476	79675	Hs.529276	NM_024622	ENSG00000138399	FASTKD1	-	FAST kinase domains 1	protein-coding
902	chr16	67594396	67598967	+	0	NA	intron (NM_006565, intron 1 of 11)	CpG	371	NM_001191022	10664	Hs.368367	NM_006565	ENSG00000102974	CTCF	MRD21	CCCTC-binding factor	protein-coding
921	chr5	65104982	65110376	+	0	NA	intron (NM_020726, intron 11 of 12)	intron (NM_020726, intron 11 of 12)	89656	NM_020726	57486	Hs.247460	NM_020726	ENSG00000123213	NLN	AGTBP|EP24.16|MEP|MOP	neurolysin	protein-coding
473	chr4	101956199	101964520	+	0	NA	intron (NM_000944, intron 11 of 13)	L2a|LINE|L2	201670	NR_107033	102465868		NR_107033	ENSG00000273882	MIR8066	hsa-mir-8066	microRNA 8066	ncRNA
774	chr19	16681684	16684704	+	0	NA	promoter-TSS (NM_024881)	promoter-TSS (NM_024881)	-1	NM_024881	79939	Hs.620596	NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
267	chr9	127951014	127953528	+	0	NA	promoter-TSS (NM_002721)	promoter-TSS (NM_002721)	-53	NM_001123369	5537	Hs.744091	NM_002721	ENSG00000119414	PPP6C	PP6|PP6C	protein phosphatase 6 catalytic subunit	protein-coding
262	chr10	28346810	28351728	+	0	NA	intron (NM_001318170, intron 13 of 16)	intron (NM_001318170, intron 13 of 16)	13038	NR_132973	106635548		NR_132973		SNORD130	-	small nucleolar RNA, C/D box 130	snoRNA
806	chr1	227001754	227004061	+	0	NA	Intergenic	Intergenic	-55366	NM_000447	5664	Hs.25363	NM_000447	ENSG00000143801	PSEN2	AD3L|AD4|CMD1V|PS2|STM2	presenilin 2	protein-coding
207	chr12	76180175	76182534	+	0	NA	Intergenic	Intergenic	244202	NM_007350	22822	Hs.602085	NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
379	chr7	134575495	134577550	+	0	NA	intron (NM_033139, intron 1 of 12)	intron (NM_033139, intron 1 of 12)	371	NM_033140	800	Hs.490203	NM_004342	ENSG00000122786	CALD1	CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22	caldesmon 1	protein-coding
66	chr1	94126833	94131681	+	0	NA	intron (NM_003567, intron 2 of 11)	L2b|LINE|L2	17669	NM_001261409	8412	Hs.36958	NM_003567	ENSG00000137936	BCAR3	AND-34|NSP2|SH2D3B	BCAR3, NSP family adaptor protein	protein-coding
588	chr3	45730044	45732395	+	0	NA	promoter-TSS (NR_033947)	promoter-TSS (NR_033947)	486	NM_001319073	22908	Hs.156509	NM_014016	ENSG00000211456	SACM1L	SAC1	SAC1 like phosphatidylinositide phosphatase	protein-coding
488	chr11	108771790	108780437	+	0	NA	intron (NM_004398, intron 16 of 17)	intron (NM_004398, intron 16 of 17)	240361	NM_004398	1662	Hs.591931	NM_004398	ENSG00000178105	DDX10	Dbp4|HRH-J8	DEAD-box helicase 10	protein-coding
748	chr15	40860976	40862915	+	0	NA	exon (NM_152260, exon 1 of 3)	exon (NM_152260, exon 1 of 3)	453	NM_152260	27079	Hs.173311	NM_152260	ENSG00000166133	RPUSD2	C15orf19|C18B11	RNA pseudouridylate synthase domain containing 2	protein-coding
304	chr1	39856556	39866525	+	0	NA	intron (NM_012090, intron 52 of 92)	intron (NM_012090, intron 52 of 92)	-13636	NM_015038	643314	Hs.658760	NM_015038	ENSG00000127603	KIAA0754	-	KIAA0754	protein-coding
385	chrX	47075420	47080166	+	0	NA	promoter-TSS (NM_006201)	promoter-TSS (NM_006201)	265	NM_033018	5127	Hs.496068	NM_006201	ENSG00000102225	CDK16	PCTAIRE|PCTAIRE1|PCTGAIRE|PCTK1	cyclin dependent kinase 16	protein-coding
994	chr10	28376140	28421085	+	0	NA	intron (NM_001318170, intron 11 of 16)	intron (NM_001318170, intron 11 of 16)	-36305	NR_132973	106635548		NR_132973		SNORD130	-	small nucleolar RNA, C/D box 130	snoRNA
937	chr11	59302930	59306642	+	0	NA	Intergenic	Intergenic	22400	NM_001004711	390199	Hs.553757	NM_001004711	ENSG00000172742	OR4D9	OR11-253	olfactory receptor family 4 subfamily D member 9	protein-coding
142	chr12	46763503	46769199	+	0	NA	5' UTR (NM_001307936, exon 1 of 15)	5' UTR (NM_001307936, exon 1 of 15)	294	NM_018976	54407	Hs.221847	NM_018976	ENSG00000134294	SLC38A2	ATA2|PRO1068|SAT2|SNAT2	solute carrier family 38 member 2	protein-coding
426	chr8	130859661	130863063	+	0	NA	intron (NM_001353310, intron 11 of 12)	intron (NM_001353310, intron 11 of 12)	-62228	NM_031415	56169	Hs.133244	NM_031415	ENSG00000147697	GSDMC	MLZE	gasdermin C	protein-coding
888	chr2	236610184	236613564	+	0	NA	intron (NM_001244888, intron 1 of 9)	intron (NM_001244888, intron 1 of 9)	-185309	NR_146582	27321		NR_146582		TNRC17	CAGL234	trinucleotide repeat containing 17	ncRNA
827	chr17	38209291	38211827	+	0	NA	intron (NM_001079518, intron 1 of 24)	intron (NM_001079518, intron 1 of 24)	330	NM_001079518	9862	Hs.462983	NM_014815	ENSG00000008838	MED24	ARC100|CRSP100|CRSP4|DRIP100|MED5|THRAP4|TRAP100	mediator complex subunit 24	protein-coding
507	chr7	100208976	100211262	+	0	NA	promoter-TSS (NM_023948)	promoter-TSS (NM_023948)	5	NM_023948	64598	Hs.521086	NM_023948	ENSG00000106330	MOSPD3	CDS3|NET30	motile sperm domain containing 3	protein-coding
920	chr3	156533004	156538798	+	0	NA	Intergenic	Intergenic	-1050	NR_038387	730091	Hs.659905	NR_038387	ENSG00000240875	LINC00886	-	long intergenic non-protein coding RNA 886	ncRNA
999	chr10	121425029	121429013	+	0	NA	intron (NM_004281, intron 1 of 3)	MIRb|SINE|MIR	16139	NM_004281	9531	Hs.523309	NM_004281	ENSG00000151929	BAG3	BAG-3|BIS|CAIR-1|MFM6	BCL2 associated athanogene 3	protein-coding
841	chr10	114132666	114157165	+	0	NA	intron (NM_016234, intron 1 of 20)	MIR|SINE|MIR	8959	NM_016234	51703	Hs.11638	NM_016234	ENSG00000197142	ACSL5	ACS2|ACS5|FACL5	acyl-CoA synthetase long chain family member 5	protein-coding
638	chr6	30581562	30587071	+	0	NA	non-coding (NR_072994, exon 2 of 20).2	non-coding (NR_072994, exon 2 of 20).2	768	NR_072994	5514	Hs.106019	NM_002714	ENSG00000204569	PPP1R10	CAT53|FB19|PNUTS|PP1R10|R111|p99	protein phosphatase 1 regulatory subunit 10	protein-coding
560	chr12	88534388	88537295	+	0	NA	promoter-TSS (NM_181783)	promoter-TSS (NM_181783)	152	NM_025114	80184	Hs.150444	NM_025114	ENSG00000198707	CEP290	3H11Ag|BBS14|CT87|JBTS5|LCA10|MKS4|NPHP6|POC3|SLSN6|rd16	centrosomal protein 290	protein-coding
720	chr12	49349126	49351767	+	0	NA	intron (NM_001659, intron 1 of 4)	intron (NM_001659, intron 1 of 4)	806	NM_001659	377	Hs.119177	NM_001659	ENSG00000134287	ARF3	-	ADP ribosylation factor 3	protein-coding
416	chr12	96428072	96430752	+	0	NA	promoter-TSS (NR_132659)	promoter-TSS (NR_132659)	27	NR_132659	4048	Hs.524648	NM_000895	ENSG00000111144	LTA4H	-	leukotriene A4 hydrolase	protein-coding
307	chr8	28346968	28349023	+	0	NA	promoter-TSS (NM_172366)	promoter-TSS (NM_172366)	-160	NM_172366	157574	Hs.741522	NM_172366	ENSG00000214050	FBXO16	FBX16	F-box protein 16	protein-coding
891	chr15	74664542	74667899	+	0	NA	Intergenic	CpG	-5203	NR_146881	105370894		NR_146881		LINC02255	-	long intergenic non-protein coding RNA 2255	ncRNA
246	chr1	84617672	84648593	+	0	NA	intron (NM_001300915, intron 1 of 11)	intron (NM_001300915, intron 1 of 11)	2809	NM_001242860	5567	Hs.487325	NM_002731	ENSG00000142875	PRKACB	PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
195	chr16	28856097	28859209	+	0	NA	promoter-TSS (NM_001308293)	promoter-TSS (NM_001308293)	76	NM_003321	7284	Hs.12084	NM_003321	ENSG00000178952	TUFM	COXPD4|EF-TuMT|EFTU|P43	Tu translation elongation factor, mitochondrial	protein-coding
905	chr2	9891192	9896197	+	0	NA	Intergenic	Intergenic	-89877	NM_005680	9014	Hs.584833	NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding
284	chr3	114302994	114306362	+	0	NA	intron (NM_001348803, intron 6 of 13)	intron (NM_001348803, intron 6 of 13)	38375	NM_001164347	26137	Hs.202577	NM_015642	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|PRIMS|ZNF288	zinc finger and BTB domain containing 20	protein-coding
571	chr6	27110907	27119217	+	0	NA	promoter-TSS (NM_001312653)	promoter-TSS (NM_001312653)	201	NM_080596	85235	Hs.352225	NM_080596	ENSG00000274997	HIST1H2AH	H2A/S|H2AFALii|H2AH|dJ86C11.1	histone cluster 1 H2A family member h	protein-coding
568	chr16	29953116	29958120	+	0	NA	Intergenic	AluJb|SINE|Alu	-17733	NM_194280	124446	Hs.460574	NM_194280	ENSG00000149932	TMEM219	IGFBP-3R	transmembrane protein 219	protein-coding
793	chr7	100780316	100784864	+	0	NA	TTS (NM_000602)	TTS (NM_000602)	12220	NM_000602	5054	Hs.414795	NM_000602	ENSG00000106366	SERPINE1	PAI|PAI-1|PAI1|PLANH1	serpin family E member 1	protein-coding
965	chr12	65706031	65712230	+	0	NA	intron (NM_001031679, intron 2 of 6)	intron (NM_001031679, intron 2 of 6)	36363	NM_001193461	253827	Hs.339024	NM_198080	ENSG00000174099	MSRB3	DFNB74	methionine sulfoxide reductase B3	protein-coding
71	chr17	73851129	73853375	+	0	NA	promoter-TSS (NM_012478)	promoter-TSS (NM_012478)	265	NM_001348170	23558	Hs.514489	NM_012478	ENSG00000132471	WBP2	DFNB107|GRAMD6|WBP-2	WW domain binding protein 2	protein-coding
442	chr9	130888289	130892389	+	0	NA	promoter-TSS (NR_024425)	promoter-TSS (NR_024425)	128	NM_001256335	80142	Hs.495219	NM_025072	ENSG00000148334	PTGES2	C9orf15|GBF-1|GBF1|PGES2|mPGES-2	prostaglandin E synthase 2	protein-coding
436	chr13	52156542	52160159	+	0	NA	promoter-TSS (NM_052950)	promoter-TSS (NM_052950)	-134	NM_052950	115825	Hs.46506	NM_052950	ENSG00000139668	WDFY2	PROF|WDF2|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding
736	chr10	103910024	103913891	+	0	NA	promoter-TSS (NM_004741)	promoter-TSS (NM_004741)	24	NM_004741	9221	Hs.523238	NM_004741	ENSG00000166197	NOLC1	NOPP130|NOPP140|NS5ATP13|P130	nucleolar and coiled-body phosphoprotein 1	protein-coding
291	chr19	10762428	10767542	+	0	NA	promoter-TSS (NM_012218)	promoter-TSS (NM_012218)	48	NM_004516	3609	Hs.465885	NM_004516	ENSG00000129351	ILF3	CBTF|DRBF|DRBP76|MMP4|MPHOSPH4|MPP4|NF-AT-90|NF110|NF110b|NF90|NF90a|NF90b|NFAR|NFAR-1|NFAR2|TCP110|TCP80	interleukin enhancer binding factor 3	protein-coding
515	chr6	34201104	34217439	+	0	NA	TTS (NR_106893)	TTS (NR_106893)	821	NR_106893	102465502		NR_106893	ENSG00000276404	MIR6835	hsa-mir-6835	microRNA 6835	ncRNA
567	chr14	91525448	91528323	+	0	NA	promoter-TSS (NM_001322238)	promoter-TSS (NM_001322238)	108	NM_001322227	9252	Hs.510225	NM_004755	ENSG00000100784	RPS6KA5	MSK1|MSPK1|RLPK	ribosomal protein S6 kinase A5	protein-coding
699	chr8	124083915	124086243	+	0	NA	exon (NM_145647, exon 1 of 22)	exon (NM_145647, exon 1 of 22)	159	NM_145647	93594	Hs.492716	NM_145647	ENSG00000156787	TBC1D31	Gm85|WDR67	TBC1 domain family member 31	protein-coding
792	chr6	106771658	106775934	+	0	NA	promoter-TSS (NM_001286108)	promoter-TSS (NM_001286108)	-101	NM_001286108	9474	Hs.486063	NM_004849	ENSG00000057663	ATG5	APG5|APG5-LIKE|APG5L|ASP|SCAR25|hAPG5	autophagy related 5	protein-coding
368	chr12	120554137	120556539	+	0	NA	promoter-TSS (NM_006861)	promoter-TSS (NM_006861)	-695	NM_006861	11021	Hs.524788	NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
837	chr3	171858215	171861476	+	0	NA	intron (NM_022763, intron 3 of 25)	MIR|SINE|MIR	101501	NM_001135095	64778	Hs.744888	NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
99	chr14	24604105	24606666	+	0	NA	promoter-TSS (NM_006263)	promoter-TSS (NM_006263)	18	NM_006263	5720	Hs.75348	NM_006263	ENSG00000092010	PSME1	HEL-S-129m|IFI5111|PA28A|PA28alpha|REGalpha	proteasome activator subunit 1	protein-coding
82	chr13	99127580	99129879	+	0	NA	intron (NM_001286649, intron 2 of 9)	intron (NM_001286649, intron 2 of 9)	45650	NM_003576	8428	Hs.508514	NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
539	chr13	31003184	31007191	+	0	NA	Intergenic	Intergenic	8562	NM_001355247	171222		NM_001355247	ENSG00000236444	UBE2L5	UBCH7N2|UBE2L5P	ubiquitin conjugating enzyme E2 L5	protein-coding
552	chr15	41622839	41626871	+	0	NA	promoter-TSS (NM_007280)	promoter-TSS (NM_007280)	-36	NM_001317860	11339	Hs.661645	NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
110	chr5	34655421	34658111	+	0	NA	5' UTR (NM_001145520, exon 1 of 18)	5' UTR (NM_001145520, exon 1 of 18)	170	NM_001145520	26064	Hs.431400	NM_015577	ENSG00000039560	RAI14	NORPEG|RAI13	retinoic acid induced 14	protein-coding
511	chr6	119466590	119470487	+	0	NA	intron (NM_001288576, intron 1 of 15)	intron (NM_001288576, intron 1 of 15)	1820	NM_001100411	79632	Hs.443789	NM_024581	ENSG00000111879	FAM184A	C6orf60	family with sequence similarity 184 member A	protein-coding
724	chr1	193026112	193030890	+	0	NA	promoter-TSS (NM_015984)	promoter-TSS (NM_015984)	22	NR_146931	51377	Hs.145469	NM_015984	ENSG00000116750	UCHL5	CGI-70|INO80R|UCH-L5|UCH37	ubiquitin C-terminal hydrolase L5	protein-coding
677	chr17	73388255	73391483	+	0	NA	intron (NM_002086, intron 1 of 5)	intron (NM_002086, intron 1 of 5)	11920	NM_002086	2885	Hs.444356	NM_002086	ENSG00000177885	GRB2	ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2	growth factor receptor bound protein 2	protein-coding
469	chr21	45137843	45140804	+	0	NA	intron (NM_003681, intron 1 of 10)	CpG	345	NM_003681	8566	Hs.284491	NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
283	chr5	88037778	88041582	+	0	NA	intron (NM_001193350, intron 6 of 10)	intron (NM_001193350, intron 6 of 10)	-52822	NR_152232	645323	Hs.12827	NR_015436	ENSG00000245526	LINC00461	ECONEXIN|EyeLinc1|VISC	long intergenic non-protein coding RNA 461	ncRNA
292	chrX	10532202	10534657	+	0	NA	intron (NM_001193281, intron 1 of 2)	intron (NM_001193281, intron 1 of 2)	2214	NM_001193279	4281	Hs.27695	NM_000381	ENSG00000101871	MID1	BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY	midline 1	protein-coding
21	chr7	116309421	116317225	+	0	NA	intron (NM_001324402, intron 1 of 19)	intron (NM_001324402, intron 1 of 19)	879	NM_001324401	4233	Hs.132966	NM_000245	ENSG00000105976	MET	AUTS9|DFNB97|HGFR|RCCP2|c-Met	MET proto-oncogene, receptor tyrosine kinase	protein-coding
288	chr10	114305467	114310778	+	0	NA	intron (NM_145206, intron 5 of 7)	intron (NM_145206, intron 5 of 7)	-85807	NR_036177	100422909		NR_036177	ENSG00000264763	MIR4295	-	microRNA 4295	ncRNA
72	chr9	140194763	140198082	+	0	NA	5' UTR (NM_001004354, exon 1 of 1)	5' UTR (NM_001004354, exon 1 of 1)	281	NM_001004354	441478	Hs.535075	NM_001004354	ENSG00000198435	NRARP	-	NOTCH regulated ankyrin repeat protein	protein-coding
652	chr12	56521463	56524653	+	0	NA	intron (NM_001184796, intron 1 of 30)	CpG	1072	NM_015292	23344	Hs.632729	NM_015292	ENSG00000139641	ESYT1	FAM62A|MBC2	extended synaptotagmin 1	protein-coding
727	chr19	11195089	11207801	+	0	NA	intron (NM_000527, intron 1 of 17)	CpG	1407	NM_001195798	3949	Hs.213289	NM_000527	ENSG00000130164	LDLR	FH|FHC|LDLCQ2	low density lipoprotein receptor	protein-coding
722	chr1	161127933	161130682	+	0	NA	promoter-TSS (NM_001319847)	promoter-TSS (NM_001319847)	53	NM_001014443	27005	Hs.8015	NM_012475	ENSG00000143258	USP21	USP16|USP23	ubiquitin specific peptidase 21	protein-coding
848	chr17	80230171	80232793	+	0	NA	non-coding (NR_110578, exon 1 of 9)	non-coding (NR_110578, exon 1 of 9)	112	NM_001893	1453	Hs.631725	NM_001893	ENSG00000141551	CSNK1D	ASPS|CKIdelta|FASPS2|HCKID	casein kinase 1 delta	protein-coding
692	chrX	46616795	46620359	+	0	NA	promoter-TSS (NM_032591)	promoter-TSS (NM_032591)	30	NM_032591	84679	Hs.91389	NM_032591	ENSG00000065923	SLC9A7	NHE-7|NHE7|SLC9A6	solute carrier family 9 member A7	protein-coding
13	chr12	31741138	31744951	+	0	NA	non-coding (NR_046909, exon 1 of 3)	non-coding (NR_046909, exon 1 of 3)	187	NR_046909	100874249	Hs.627628	NR_046909	ENSG00000255867	DENND5B-AS1	-	DENND5B antisense RNA 1	ncRNA
605	chr10	74019021	74024495	+	0	NA	Intergenic	AluJr4|SINE|Alu	-11919	NM_019058	54541	Hs.744875	NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
959	chr22	50730543	50747230	+	0	NA	intron (NM_012401, intron 1 of 36)	CpG	7115	NM_012401	23654	Hs.3989	NM_012401	ENSG00000196576	PLXNB2	MM1|Nbla00445|PLEXB2|dJ402G11.3	plexin B2	protein-coding
188	chr8	29315883	29318451	+	0	NA	Intergenic	Intergenic	-108900	NM_001394	1846	Hs.417962	NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
282	chr7	116352798	116358218	+	0	NA	intron (NM_000245, intron 2 of 20)	MLT1C|LTR|ERVL-MaLR	43064	NM_001324401	4233	Hs.132966	NM_000245	ENSG00000105976	MET	AUTS9|DFNB97|HGFR|RCCP2|c-Met	MET proto-oncogene, receptor tyrosine kinase	protein-coding
828	chr12	1770816	1773816	+	0	NA	Intergenic	CpG	-2770	NR_037422	100500816		NR_037422	ENSG00000266043	MIR3649	-	microRNA 3649	ncRNA
969	chr17	38982869	38986075	+	0	NA	intron (NM_001195386, intron 1 of 2)	intron (NM_001195386, intron 1 of 2)	-5609	NM_000421	3858	Hs.99936	NM_000421	ENSG00000186395	KRT10	BCIE|BIE|CK10|EHK|K10|KPP	keratin 10	protein-coding
59	chr19	2086742	2088704	+	0	NA	intron (NM_130807, intron 1 of 4)	intron (NM_130807, intron 1 of 4)	8546	NM_130807	126308	Hs.744938	NM_130807	ENSG00000172081	MOB3A	MOB-LAK|MOB1C|MOBKL2A|moblak	MOB kinase activator 3A	protein-coding
912	chr2	9704446	9707437	+	0	NA	Intergenic	Intergenic	-9992	NM_003183	6868	Hs.404914	NM_003183	ENSG00000151694	ADAM17	ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE	ADAM metallopeptidase domain 17	protein-coding
370	chr10	103910024	103913891	+	0	NA	promoter-TSS (NM_004741)	promoter-TSS (NM_004741)	24	NM_004741	9221	Hs.523238	NM_004741	ENSG00000166197	NOLC1	NOPP130|NOPP140|NS5ATP13|P130	nucleolar and coiled-body phosphoprotein 1	protein-coding
166	chr11	65335997	65346628	+	0	NA	3' UTR (NM_152832, exon 2 of 2)	3' UTR (NM_152832, exon 2 of 2)	1492	NM_001098785	23625	Hs.731854	NM_152832	ENSG00000176973	FAM89B	LRAP25|MTVR|MTVR1	family with sequence similarity 89 member B	protein-coding
209	chr6	34194738	34198931	+	0	NA	Intergenic	Intergenic	-7743	NM_001319082	3159	Hs.518805	NM_002131	ENSG00000137309	HMGA1	HMG-R|HMGA1A|HMGIY	high mobility group AT-hook 1	protein-coding
807	chr11	33756769	33758637	+	0	NA	intron (NM_203330, intron 1 of 5)	CpG	322	NM_000611	966	Hs.278573	NM_000611	ENSG00000085063	CD59	16.3A5|1F5|EJ16|EJ30|EL32|G344|HRF-20|HRF20|MAC-IP|MACIF|MEM43|MIC11|MIN1|MIN2|MIN3|MIRL|MSK21|p18-20	CD59 molecule (CD59 blood group)	protein-coding
210	chr2	182739872	182743474	+	0	NA	Intergenic	L2a|LINE|L2	-14770	NM_001287504	6744	Hs.196983	NM_006751	ENSG00000138434	SSFA2	CS-1|CS1|KRAP|SPAG13	sperm specific antigen 2	protein-coding
482	chr9	139889302	139893210	+	0	NA	promoter-TSS (NM_004669)	promoter-TSS (NM_004669)	-232	NM_004669	9022	Hs.64746	NM_004669	ENSG00000169583	CLIC3	-	chloride intracellular channel 3	protein-coding
704	chr2	182605436	182610021	+	0	NA	Intergenic	Intergenic	-62336	NM_002500	4760	Hs.574626	NM_002500	ENSG00000162992	NEUROD1	BETA2|BHF-1|MODY6|NEUROD|bHLHa3	neuronal differentiation 1	protein-coding
462	chr2	65056080	65060781	+	0	NA	Intergenic	Intergenic	32335	NR_110224	101927438	Hs.580313	NR_110224	ENSG00000234572	LINC01800	-	long intergenic non-protein coding RNA 1800	ncRNA
537	chr10	72055486	72057256	+	0	NA	Intergenic	Intergenic	-12921	NM_022146	64106	Hs.302026	NM_022146	ENSG00000148734	NPFFR1	GPR147|NPFF1|NPFF1R1|OT7T022	neuropeptide FF receptor 1	protein-coding
471	chr5	5420061	5423970	+	0	NA	promoter-TSS (NM_015325)	promoter-TSS (NM_015325)	-771	NM_015325	23379	Hs.449296	NM_015325	ENSG00000164151	ICE1	KIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding
148	chr10	74055001	74059698	+	0	NA	Intergenic	MIRb|SINE|MIR	23672	NM_019058	54541	Hs.744875	NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
231	chr1	16119973	16128344	+	0	NA	Intergenic	AluSc|SINE|Alu	10036	NM_001089591	440567	Hs.568229	NM_001089591	ENSG00000233954	UQCRHL	-	ubiquinol-cytochrome c reductase hinge protein like	protein-coding
238	chr6	151355429	151369162	+	0	NA	intron (NM_001350492, intron 26 of 27)	intron (NM_001350492, intron 26 of 27)	34151	NM_001350490	25902	Hs.591343	NM_015440	ENSG00000120254	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like	protein-coding
329	chr3	49465931	49468811	+	0	NA	promoter-TSS (NM_032316)	promoter-TSS (NM_032316)	-614	NM_032316	84276	Hs.191460	NM_032316	ENSG00000145029	NICN1	-	nicolin 1	protein-coding
173	chr17	65385375	65388361	+	0	NA	intron (NM_012417, intron 1 of 8)	intron (NM_012417, intron 1 of 8)	13471	NM_012417	26207	Hs.591185	NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein cytoplasmic 1	protein-coding
244	chr10	23103971	23108242	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-102603	NM_005028	5305	Hs.57079	NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
16	chr5	138939321	138943293	+	0	NA	5' UTR (NM_003339, exon 1 of 7)	5' UTR (NM_003339, exon 1 of 7)	556	NM_003339	7322	Hs.108332	NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
854	chr2	226977573	227004136	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-16656	NR_046102	646736	Hs.712836	NR_046102		LOC646736	-	uncharacterized LOC646736	ncRNA
572	chr11	65654167	65660775	+	0	NA	promoter-TSS (NM_006848)	promoter-TSS (NM_006848)	-404	NM_006848	11007	Hs.66713	NM_006848	ENSG00000175602	CCDC85B	DIPA	coiled-coil domain containing 85B	protein-coding
816	chr19	13066594	13069589	+	0	NA	promoter-TSS (NM_052850)	promoter-TSS (NM_052850)	-23	NM_052850	90480	Hs.515164	NM_052850	ENSG00000179271	GADD45GIP1	CKBBP2|CKbetaBP2|CRIF1|MRP-L59|PLINP|PLINP-1|PRG6|Plinp1	GADD45G interacting protein 1	protein-coding
375	chr19	505744	512353	+	0	NA	intron (NM_033513, intron 1 of 1)	intron (NM_033513, intron 1 of 1)	1551	NM_033513	91978	Hs.369613	NM_033513	ENSG00000141933	TPGS1	C19orf20|GTRGEO22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding
429	chr11	66111403	66113817	+	0	NA	promoter-TSS (NM_015399)	promoter-TSS (NM_015399)	-28	NM_001024957	25855	Hs.100426	NM_015399	ENSG00000174744	BRMS1	-	breast cancer metastasis suppressor 1	protein-coding
86	chr12	56074421	56076824	+	0	NA	exon (NM_152637, exon 1 of 2)	exon (NM_152637, exon 1 of 2)	292	NM_152637	196410	Hs.51483	NM_152637	ENSG00000170439	METTL7B	ALDI	methyltransferase like 7B	protein-coding
532	chr19	13226198	13230312	+	0	NA	promoter-TSS (NM_001351762)	promoter-TSS (NM_001351762)	-670	NM_001351760	55621	Hs.515169	NM_017722	ENSG00000104907	TRMT1	TRM1	tRNA methyltransferase 1	protein-coding
609	chr7	6046985	6050293	+	0	NA	promoter-TSS (NM_001322003)	promoter-TSS (NM_001322003)	20	NM_001322009	5395	Hs.632637	NM_000535	ENSG00000122512	PMS2	HNPCC4|MLH4|PMS2CL|PMSL2	PMS1 homolog 2, mismatch repair system component	protein-coding
120	chr16	75042804	75048413	+	0	NA	intron (NM_032268, intron 1 of 4)	intron (NM_032268, intron 1 of 4)	12693	NM_032268	84937	Hs.427284	NM_032268	ENSG00000186187	ZNRF1	NIN283	zinc and ring finger 1	protein-coding
350	chr11	63991357	63995564	+	0	NA	promoter-TSS (NM_001271831)	promoter-TSS (NM_001271831)	-119	NM_001160393	83707	Hs.326586	NM_031472	ENSG00000149743	TRPT1	-	tRNA phosphotransferase 1	protein-coding
997	chr2	113482399	113485678	+	0	NA	intron (NM_001350494, intron 14 of 16)	intron (NM_001350494, intron 14 of 16)	4975	NM_001350494	284958	Hs.589714	NM_001350494	ENSG00000144130	NT5DC4	-	5'-nucleotidase domain containing 4	protein-coding
982	chr9	37952112	37955722	+	0	NA	intron (NM_003028, intron 4 of 5)	intron (NM_003028, intron 4 of 5)	-49567	NR_024873	92014	Hs.634120	NM_033412	ENSG00000122696	SLC25A51	CG7943|MCART1	solute carrier family 25 member 51	protein-coding
732	chr8	29521294	29528213	+	0	NA	Intergenic	(TTATA)n|Simple_repeat|Simple_repeat	80872	NR_026765	619351	Hs.566911	NR_026765	ENSG00000251191	LINC00589	C8orf75|TSLNC8	long intergenic non-protein coding RNA 589	ncRNA
974	chr9	131708317	131711674	+	0	NA	promoter-TSS (NM_014908)	promoter-TSS (NM_014908)	17	NM_014908	22845	Hs.531563	NM_014908	ENSG00000175283	DOLK	CDG1M|DK|DK1|SEC59|TMEM15	dolichol kinase	protein-coding
126	chr5	140025834	140028485	+	0	NA	promoter-TSS (NM_006083)	promoter-TSS (NM_006083)	211	NR_033697	4695	Hs.75914	NM_002488	ENSG00000131495	NDUFA2	B8|CD14|CIB8	NADH:ubiquinone oxidoreductase subunit A2	protein-coding
363	chr12	70841622	70845225	+	0	NA	Intergenic	Intergenic	83361	NM_014505	27345	Hs.525529	NM_014505	ENSG00000135643	KCNMB4	-	potassium calcium-activated channel subfamily M regulatory beta subunit 4	protein-coding
44	chr10	3802854	3806636	+	0	NA	Intergenic	Intergenic	22728	NM_001160125	1316	Hs.4055	NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	Kruppel like factor 6	protein-coding
182	chr1	10091373	10095701	+	0	NA	5' UTR (NM_006048, exon 1 of 27)	5' UTR (NM_006048, exon 1 of 27)	496	NM_006048	10277	Hs.593974	NM_006048	ENSG00000130939	UBE4B	E4|HDNB1|UBOX3|UFD2|UFD2A	ubiquitination factor E4B	protein-coding
614	chr12	54387493	54392184	+	0	NA	intron (NR_047505, intron 1 of 2)	intron (NR_047505, intron 1 of 2)	731	NR_047505	100874364	Hs.734940	NR_047505	ENSG00000250133	HOXC-AS2	-	HOXC cluster antisense RNA 2	ncRNA
554	chr5	137876995	137880913	+	0	NA	promoter-TSS (NM_001256302)	promoter-TSS (NM_001256302)	35	NM_004730	2107	Hs.483494	NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
778	chrX	23899832	23905413	+	0	NA	intron (NR_026545, intron 1 of 7)	L1MA8|LINE|L1	23435	NM_024122	79135	Hs.495851	NM_024122	ENSG00000184831	APOO	FAM121B|MIC26|Mic23|My025	apolipoprotein O	protein-coding
718	chr7	65616998	65619225	+	0	NA	non-coding (NR_024548, exon 7 of 7)	non-coding (NR_024548, exon 7 of 7)	38306	NM_001142414	27297	Hs.300684	NM_014478	ENSG00000241258	CRCP	CGRP-RCP|CGRPRCP|RCP|RCP9|RPC9	CGRP receptor component	protein-coding
154	chr7	2438862	2440794	+	0	NA	Intergenic	Intergenic	-3367	NM_018641	55501	Hs.288853	NM_018641	ENSG00000136213	CHST12	C4S-2|C4ST-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding
838	chr6	26101136	26106669	+	0	NA	promoter-TSS (NM_003542)	promoter-TSS (NM_003542)	-274	NM_003542	8364	Hs.46423	NM_003542	ENSG00000197061	HIST1H4C	H4/g|H4FG|dJ221C16.1	histone cluster 1 H4 family member c	protein-coding
914	chr1	8172883	8184177	+	0	NA	Intergenic	Intergenic	-90202	NR_125998	102724539	Hs.516816	NR_125998	ENSG00000227634	LINC01714	-	long intergenic non-protein coding RNA 1714	ncRNA
640	chr11	62445283	62447656	+	0	NA	5' UTR (NM_001286077, exon 1 of 9)	5' UTR (NM_001286077, exon 1 of 9)	120	NM_001286077	51035	Hs.351296	NM_015853	ENSG00000162191	UBXN1	2B28|SAKS1|UBXD10	UBX domain protein 1	protein-coding
649	chr20	33103055	33105663	+	0	NA	intron (NM_001281727, intron 1 of 3)	CpG	170	NR_104032	83658	Hs.593920	NM_014183	ENSG00000125971	DYNLRB1	BITH|BLP|DNCL2A|DNLC2A|ROBLD1	dynein light chain roadblock-type 1	protein-coding
149	chr7	2392422	2396023	+	0	NA	promoter-TSS (NM_003751)	promoter-TSS (NM_003751)	-252	NM_003751	8662	Hs.371001	NM_003751	ENSG00000106263	EIF3B	EIF3-ETA|EIF3-P110|EIF3-P116|EIF3S9|PRT1	eukaryotic translation initiation factor 3 subunit B	protein-coding
616	chr10	102824302	102828253	+	0	NA	TTS (NM_030929)	TTS (NM_030929)	221	NR_135068	81621	Hs.534859	NM_030929	ENSG00000107821	KAZALD1	BONO1|FKSG28|FKSG40|IGFBP-rP10	Kazal type serine peptidase inhibitor domain 1	protein-coding
415	chr10	32169127	32172702	+	0	NA	intron (NM_001270697, intron 3 of 18)	AluYa5|SINE|Alu	26940	NM_001270699	94134	Hs.499264	NM_018287	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
323	chr1	65641145	65645297	+	0	NA	intron (NM_001330616, intron 1 of 4)	intron (NM_001330616, intron 1 of 4)	28535	NM_001330616	205	Hs.10862	NM_013410	ENSG00000162433	AK4	AK 4|AK3|AK3L1|AK3L2	adenylate kinase 4	protein-coding
725	chr21	45137843	45140804	+	0	NA	intron (NM_003681, intron 1 of 10)	CpG	345	NM_003681	8566	Hs.284491	NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
968	chr2	8765859	8776398	+	0	NA	Intergenic	Intergenic	-47206	NR_110257	101929567	Hs.634706	NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
229	chr11	32727544	32730385	+	0	NA	intron (NM_001008391, intron 3 of 17)	MER110-int|LTR|ERV1	87240	NM_001008391	493860	Hs.706808	NM_001008391	ENSG00000186714	CCDC73	NY-SAR-79	coiled-coil domain containing 73	protein-coding
893	chr11	100619172	100626533	+	0	NA	intron (NM_152432, intron 1 of 23)	L1PBa|LINE|L1	-64166	NR_133571	100128386	Hs.635125	NR_133571	ENSG00000248027	LOC100128386	-	uncharacterized LOC100128386	ncRNA
589	chr1	24017682	24020311	+	0	NA	intron (NM_001199802, intron 1 of 5)	intron (NM_001199802, intron 1 of 5)	727	NM_000975	6135	Hs.719951	NM_000975	ENSG00000142676	RPL11	DBA7|GIG34|L11|uL5	ribosomal protein L11	protein-coding
553	chr19	44172267	44176059	+	0	NA	intron (NM_001005376, intron 1 of 6)	intron (NM_001005376, intron 1 of 6)	335	NM_001005376	5329	Hs.466871	NM_002659	ENSG00000011422	PLAUR	CD87|U-PAR|UPAR|URKR	plasminogen activator, urokinase receptor	protein-coding
512	chr3	185404819	185408949	+	0	NA	intron (NM_001007225, intron 6 of 14)	intron (NM_001007225, intron 6 of 14)	-24156	NR_126326	646600	Hs.647949	NR_027317	ENSG00000163915	IGF2BP2-AS1	C3orf65	IGF2BP2 antisense RNA 1	ncRNA
973	chr16	29825589	29838269	+	0	NA	3' UTR (NM_024516, exon 3 of 3)	3' UTR (NM_024516, exon 3 of 3)	214	NM_005115	9961	Hs.632177	NM_005115	ENSG00000013364	MVP	LRP|VAULT1	major vault protein	protein-coding
134	chr5	134238703	134243549	+	0	NA	intron (NM_032151, intron 1 of 3)	CpG	316	NM_032151	84105	Hs.710014	NM_032151	ENSG00000132570	PCBD2	DCOH2|DCOHM|PHS2	pterin-4 alpha-carbinolamine dehydratase 2	protein-coding
820	chr7	150754198	150761383	+	0	NA	intron (NM_003040, intron 1 of 22)	intron (NM_003040, intron 1 of 22)	1133	NM_003040	6522	Hs.647069	NM_003040	ENSG00000164889	SLC4A2	AE2|BND3L|EPB3L1|HKB3|NBND3	solute carrier family 4 member 2	protein-coding
623	chr17	79317006	79321399	+	0	NA	Intergenic	CpG	-14728	NM_178520	284186	Hs.364191	NM_178520	ENSG00000185332	TMEM105	-	transmembrane protein 105	protein-coding
980	chr10	102745581	102749252	+	0	NA	promoter-TSS (NM_176792)	promoter-TSS (NM_176792)	123	NM_001163814	56652	Hs.22678	NM_021830	ENSG00000107815	TWNK	ATXN8|C10orf2|IOSCA|MTDPS7|PEO|PEO1|PEOA3|PRLTS5|SANDO|SCA8|TWINL	twinkle mtDNA helicase	protein-coding
600	chr9	33815519	33818841	+	0	NA	promoter-TSS (NM_017811)	promoter-TSS (NM_017811)	-2	NM_017811	54926	Hs.643648	NM_017811	ENSG00000107341	UBE2R2	CDC34B|E2-CDC34B|UBC3B	ubiquitin conjugating enzyme E2 R2	protein-coding
353	chr9	26890631	26895437	+	0	NA	promoter-TSS (NM_024828)	promoter-TSS (NM_024828)	-208	NM_001167575	79886	Hs.178357	NM_024828	ENSG00000120159	CAAP1	C9orf82|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding
499	chr2	201166353	201173575	+	0	NA	promoter-TSS (NM_001282735)	promoter-TSS (NM_001282735)	-640	NM_015535	26010	Hs.120323	NM_015535	ENSG00000196141	SPATS2L	DNAPTP6|SGNP	spermatogenesis associated serine rich 2 like	protein-coding
335	chr16	29800655	29804413	+	0	NA	5' UTR (NM_001256270, exon 1 of 14)	5' UTR (NM_001256270, exon 1 of 14)	245	NM_001256270	3835	Hs.612151	NM_007317	ENSG00000079616	KIF22	A-328A3.2|KID|KNSL4|OBP|OBP-1|OBP-2|SEMDJL2	kinesin family member 22	protein-coding
155	chr11	66658591	66660939	+	0	NA	intron (NM_000920, intron 2 of 21)	intron (NM_000920, intron 2 of 21)	15575	NM_022172	5091	Hs.89890	NM_000920	ENSG00000173599	PC	PCB	pyruvate carboxylase	protein-coding
798	chr1	168364740	168371010	+	0	NA	Intergenic	Intergenic	23113	NR_030284	693142		NR_030284	ENSG00000207974	MIR557	MIRN557|hsa-mir-557	microRNA 557	ncRNA
536	chr3	133918074	133922142	+	0	NA	intron (NM_001005861, intron 6 of 14)	intron (NM_001005861, intron 6 of 14)	49478	NM_001005861	6259	Hs.654562	NM_002958	ENSG00000163785	RYK	D3S3195|JTK5|JTK5A|RYK1	receptor-like tyrosine kinase	protein-coding
25	chr1	38463509	38468511	+	0	NA	intron (NM_004468, intron 1 of 5)	intron (NM_004468, intron 1 of 5)	5177	NM_004468	2275	Hs.57687	NM_004468	ENSG00000183386	FHL3	SLIM2	four and a half LIM domains 3	protein-coding
909	chr1	28825885	28829239	+	0	NA	TTS (NM_001350159)	TTS (NM_001350159)	-4893	NM_001048199	1104	Hs.469723	NM_001269	ENSG00000180198	RCC1	CHC1|RCC1-I|SNHG3-RCC1	regulator of chromosome condensation 1	protein-coding
936	chr17	39064005	39074483	+	0	NA	Intergenic	Intergenic	24651	NM_001282433	25984	Hs.9029	NM_015515	ENSG00000108244	KRT23	CK23|HAIK1|K23	keratin 23	protein-coding
583	chr14	68637887	68641775	+	0	NA	intron (NM_002877, intron 7 of 10)	MIRc|SINE|MIR	349522	NM_001321815	5890	Hs.172587	NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
293	chr1	45194655	45199555	+	0	NA	Intergenic	Intergenic	-8385	NM_006845	11004	Hs.720061	NM_006845	ENSG00000142945	KIF2C	CT139|KNSL6|MCAK	kinesin family member 2C	protein-coding
538	chr3	155521916	155525406	+	0	NA	intron (NM_173657, intron 1 of 5)	intron (NM_173657, intron 1 of 5)	415	NM_001308229	285315	Hs.350846	NM_173657	ENSG00000174928	C3orf33	AC3-33	chromosome 3 open reading frame 33	protein-coding
228	chr1	8118606	8123962	+	0	NA	Intergenic	MIR|SINE|MIR	-34891	NM_018948	54206	Hs.605445	NM_018948	ENSG00000116285	ERRFI1	GENE-33|MIG-6|MIG6|RALT	ERBB receptor feedback inhibitor 1	protein-coding
237	chr1	7357350	7363638	+	0	NA	intron (NM_001349608, intron 4 of 21)	AluSq|SINE|Alu	89320	NR_146201	102725193	Hs.666120	NR_146199	ENSG00000237728	LOC102725193	-	uncharacterized LOC102725193	ncRNA
707	chr8	28241934	28245331	+	0	NA	intron (NM_018660, intron 1 of 9)	C-rich|Low_complexity|Low_complexity	345	NM_018660	55893	Hs.435535	NM_018660	ENSG00000186918	ZNF395	HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14	zinc finger protein 395	protein-coding
747	chr10	80723329	80726659	+	0	NA	intron (NR_015429, intron 3 of 7)	intron (NR_015429, intron 3 of 7)	102211	NR_015429	283050	Hs.309176	NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
879	chr3	193586402	193588804	+	0	NA	Intergenic	CpG	-25805	NR_146718	105374285	Hs.552531	NR_146718		LINC02038	-	long intergenic non-protein coding RNA 2038	ncRNA
298	chr7	152131011	152134439	+	0	NA	exon (NM_170606, exon 1 of 59)	exon (NM_170606, exon 1 of 59)	365	NM_170606	58508	Hs.647120	NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
956	chr10	103891070	103895198	+	0	NA	intron (NM_001288728, intron 1 of 13)	CpG	383	NM_015062	23082	Hs.533551	NM_015062	ENSG00000148840	PPRC1	PRC	peroxisome proliferator-activated receptor gamma, coactivator-related 1	protein-coding
573	chr9	130715962	130719362	+	0	NA	intron (NM_001035254, intron 1 of 10)	MIRb|SINE|MIR	-4669	NM_203305	399665	Hs.535972	NM_203305	ENSG00000167106	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	family with sequence similarity 102 member A	protein-coding
369	chr15	85174113	85179073	+	0	NA	intron (NR_003654, intron 1 of 3)	intron (NR_003654, intron 1 of 3)	1902	NR_003654	54581	Hs.658114	NM_022050		SCAND2P	SCAND2	SCAN domain containing 2 pseudogene	pseudo
517	chr8	144812321	144824502	+	0	NA	intron (NR_033849, intron 2 of 3)	AluSq2|SINE|Alu	2101	NR_033849	100128338	Hs.493171	NR_033849	ENSG00000203499	FAM83H-AS1	onco-lncRNA-3	FAM83H antisense RNA 1 (head to head)	ncRNA
577	chr2	226903551	226933821	+	0	NA	Intergenic	Intergenic	-88824	NR_046102	646736	Hs.712836	NR_046102		LOC646736	-	uncharacterized LOC646736	ncRNA
233	chr2	161989595	161997028	+	0	NA	promoter-TSS (NM_004180)	promoter-TSS (NM_004180)	-155	NM_004180	10010	Hs.132257	NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
325	chr1	201680333	201685074	+	0	NA	intron (NM_020443, intron 2 of 29)	intron (NM_020443, intron 2 of 29)	-5933	NR_049823	100847050		NR_049823	ENSG00000264802	MIR5191	-	microRNA 5191	ncRNA
146	chr2	128050026	128053520	+	0	NA	promoter-TSS (NM_001303418)	promoter-TSS (NM_001303418)	-21	NM_000122	2071	Hs.469872	NM_000122	ENSG00000163161	ERCC3	BTF2|GTF2H|RAD25|TFIIH|TTD2|XPB	ERCC excision repair 3, TFIIH core complex helicase subunit	protein-coding
140	chr10	73721860	73726820	+	0	NA	5' UTR (NM_004273, exon 1 of 3)	5' UTR (NM_004273, exon 1 of 3)	220	NM_004273	9469	Hs.158304	NM_004273	ENSG00000122863	CHST3	C6ST|C6ST1|HSD	carbohydrate sulfotransferase 3	protein-coding
270	chr20	30265225	30268270	+	0	NA	intron (NR_134257, intron 1 of 2)	intron (NR_134257, intron 1 of 2)	41056	NM_032609	84701	Hs.277101	NM_032609	ENSG00000131055	COX4I2	COX4|COX4-2|COX4B|COX4L2|COXIV-2|dJ857M17.2	cytochrome c oxidase subunit 4I2	protein-coding
129	chr16	2730511	2733832	+	0	NA	promoter-TSS (NM_018992)	promoter-TSS (NM_018992)	-324	NM_018992	54442	Hs.61960	NM_018992	ENSG00000167977	KCTD5	-	potassium channel tetramerization domain containing 5	protein-coding
424	chr12	113667535	113670652	+	0	NA	intron (NM_001143819, intron 3 of 28)	MLT1B|LTR|ERVL-MaLR	9850	NM_017901	53373	Hs.524763	NM_017901	ENSG00000186815	TPCN1	TPC1	two pore segment channel 1	protein-coding
37	chr11	533603	538942	+	0	NA	promoter-TSS (NM_001130442)	promoter-TSS (NM_001130442)	-705	NM_005343	3265	Hs.37003	NM_005343	ENSG00000174775	HRAS	C-BAS/HAS|C-H-RAS|C-HA-RAS1|CTLO|H-RASIDX|HAMSV|HRAS1|RASH1|p21ras	HRas proto-oncogene, GTPase	protein-coding
527	chr1	193082962	193086243	+	0	NA	Intergenic	Intergenic	-6486	NM_024529	79577	Hs.378996	NM_024529	ENSG00000134371	CDC73	C1orf28|FIHP|HPTJT|HRPT1|HRPT2|HYX	cell division cycle 73	protein-coding
164	chr16	31007050	31011093	+	0	NA	intron (NM_052874, intron 4 of 9)	intron (NM_052874, intron 4 of 9)	12552	NM_025193	80270	Hs.460618	NM_025193	ENSG00000099377	HSD3B7	CBAS1|PFIC4|SDR11E3	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding
193	chr9	130688360	130696413	+	0	NA	intron (NM_001135219, intron 1 of 9)	MIRb|SINE|MIR	690	NM_001135219	138429	Hs.734928	NM_173492	ENSG00000167103	PIP5KL1	PIPKH	phosphatidylinositol-4-phosphate 5-kinase like 1	protein-coding
15	chr16	11943922	11946889	+	0	NA	promoter-TSS (NM_015659)	promoter-TSS (NM_015659)	37	NM_015659	26156	Hs.401842	NM_015659	ENSG00000171490	RSL1D1	CSIG|L12|PBK1|UTP30	ribosomal L1 domain containing 1	protein-coding
321	chr17	46183909	46186684	+	0	NA	intron (NM_001330320, intron 1 of 6)	intron (NM_001330320, intron 1 of 6)	349	NM_013323	29916	Hs.15827	NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
933	chr7	6542926	6544903	+	0	NA	intron (NM_001145118, intron 15 of 21)	CpG	-20065	NM_001100603	11014	Hs.654552	NM_006854	ENSG00000136240	KDELR2	ELP-1|ERD2.2	KDEL endoplasmic reticulum protein retention receptor 2	protein-coding
8	chr9	37952112	37955722	+	0	NA	intron (NM_003028, intron 4 of 5)	intron (NM_003028, intron 4 of 5)	-49567	NR_024873	92014	Hs.634120	NM_033412	ENSG00000122696	SLC25A51	CG7943|MCART1	solute carrier family 25 member 51	protein-coding
971	chr19	47986202	47988823	+	0	NA	promoter-TSS (NR_111923)	promoter-TSS (NR_111923)	9	NM_007059	11133	Hs.25441	NM_007059	ENSG00000118162	KPTN	2E4|MRT41	kaptin, actin binding protein	protein-coding
984	chr5	178984382	178987987	+	0	NA	promoter-TSS (NM_001040452)	promoter-TSS (NM_001040452)	-509	NM_001040451	80230	Hs.306769	NM_025158	ENSG00000176783	RUFY1	RABIP4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding
881	chr2	227629899	227633588	+	0	NA	intron (NM_005544, intron 1 of 1)	intron (NM_005544, intron 1 of 1)	31763	NM_005544	3667	Hs.471508	NM_005544	ENSG00000169047	IRS1	HIRS-1	insulin receptor substrate 1	protein-coding
232	chr11	65678165	65687706	+	0	NA	Intergenic	Intergenic	3596	NM_031450	83638	Hs.433573	NM_031450	ENSG00000175573	C11orf68	BLES03|P5326	chromosome 11 open reading frame 68	protein-coding
944	chr19	908143	910818	+	0	NA	intron (NM_138774, intron 1 of 7)	intron (NM_138774, intron 1 of 7)	3745	NM_138774	91300	Hs.557655	NM_138774	ENSG00000198858	R3HDM4	C19orf22	R3H domain containing 4	protein-coding
990	chr16	19146068	19149555	+	0	NA	Intergenic	Intergenic	22557	NM_001034841	162073	Hs.530899	NM_001034841	ENSG00000205730	ITPRIPL2	-	ITPRIP like 2	protein-coding
509	chr10	75690788	75693632	+	0	NA	Intergenic	Intergenic	-9675	NM_001001791	414236	Hs.585453	NM_001001791	ENSG00000222047	C10orf55	-	chromosome 10 open reading frame 55	protein-coding
706	chr8	143895390	143899524	+	0	NA	Intergenic	Intergenic	-18760	NM_002066	2765	Hs.661218	NM_002066	ENSG00000104499	GML	LY6DL	glycosylphosphatidylinositol anchored molecule like	protein-coding
646	chr19	42829089	42831572	+	0	NA	5' UTR (NM_001410, exon 1 of 41)	5' UTR (NM_001410, exon 1 of 41)	569	NM_001271938	1954	Hs.132483	NM_001410	ENSG00000105429	MEGF8	C19orf49|CRPT2|EGFL4|SBP1	multiple EGF like domains 8	protein-coding
176	chr16	75655718	75657934	+	0	NA	5' UTR (NM_001324446, exon 1 of 11)	5' UTR (NM_001324446, exon 1 of 11)	395	NM_001324449	23536	Hs.729312	NM_012091	ENSG00000065457	ADAT1	HADAT1	adenosine deaminase, tRNA specific 1	protein-coding
709	chr3	49042993	49047263	+	0	NA	promoter-TSS (NM_001320547)	promoter-TSS (NM_001320547)	90	NM_001320547	11180	Hs.654815	NM_018031	ENSG00000178252	WDR6	-	WD repeat domain 6	protein-coding
790	chr10	114090174	114094687	+	0	NA	intron (NR_028134, intron 10 of 18)	intron (NR_028134, intron 10 of 18)	23923	NR_028134	390003	Hs.534691	NR_028134	ENSG00000243316	GUCY2GP	GUCY2G	guanylate cyclase 2G, pseudogene	pseudo
467	chr1	43812649	43818024	+	0	NA	intron (NM_005373, intron 10 of 11)	intron (NM_005373, intron 10 of 11)	-9290	NM_001255	991	Hs.524947	NM_001255	ENSG00000117399	CDC20	CDC20A|bA276H19.3|p55CDC	cell division cycle 20	protein-coding
672	chr22	31890536	31894056	+	0	NA	5' UTR (NM_014775, exon 1 of 32)	5' UTR (NM_014775, exon 1 of 32)	171	NM_001258325	9814	Hs.62209	NM_014775	ENSG00000198089	SFI1	PISD|PPP1R139|hSfi1p	SFI1 centrin binding protein	protein-coding
596	chr16	30387960	30391324	+	0	NA	promoter-TSS (NM_001214906)	promoter-TSS (NM_001214906)	7	NM_001214907	197407	Hs.513501	NM_152652	ENSG00000180035	ZNF48	ZNF553	zinc finger protein 48	protein-coding
836	chr12	65902271	65906906	+	0	NA	intron (NR_120432, intron 4 of 4)	intron (NR_120432, intron 4 of 4)	46503	NR_135033	105369187	Hs.738044	NR_135033	ENSG00000250748	LOC105369187	-	uncharacterized LOC105369187	ncRNA
516	chr16	89523957	89526050	+	0	NA	intron (NM_001256182, intron 1 of 13)	intron (NM_001256182, intron 1 of 13)	27677	NR_110931	101927817	Hs.667942	NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
729	chr2	226943406	226946344	+	0	NA	Intergenic	Intergenic	-62635	NR_046102	646736	Hs.712836	NR_046102		LOC646736	-	uncharacterized LOC646736	ncRNA
265	chr16	21962958	21966140	+	0	NA	5' UTR (NM_003366, exon 1 of 14)	5' UTR (NM_003366, exon 1 of 14)	164	NM_003366	7385	Hs.528803	NM_003366	ENSG00000140740	UQCRC2	MC3DN5|QCR2|UQCR2	ubiquinol-cytochrome c reductase core protein 2	protein-coding
635	chr20	33542134	33544807	+	0	NA	promoter-TSS (NM_001322495)	promoter-TSS (NM_001322495)	-32	NM_001322495	2937	Hs.82327	NM_000178	ENSG00000100983	GSS	GSHS|HEL-S-64p|HEL-S-88n	glutathione synthetase	protein-coding
410	chr17	72412213	72414892	+	0	NA	Intergenic	MIR3|SINE|MIR	-14115	NM_022036	55890	Hs.446438	NM_018653	ENSG00000170412	GPRC5C	RAIG-3|RAIG3	G protein-coupled receptor class C group 5 member C	protein-coding
700	chr9	35094812	35097557	+	0	NA	5' UTR (NM_001201484, exon 1 of 13)	5' UTR (NM_001201484, exon 1 of 13)	362	NM_001201484	84720	Hs.522099	NM_032634	ENSG00000165282	PIGO	HPMRS2	phosphatidylinositol glycan anchor biosynthesis class O	protein-coding
358	chr12	76136991	76142754	+	0	NA	Intergenic	MER91A|DNA|hAT-Tip100	-234454	NM_007043	11103	Hs.645517	NM_007043	ENSG00000111615	KRR1	HRB2|RIP-1	KRR1, small subunit processome component homolog	protein-coding
236	chr17	40810213	40813955	+	0	NA	intron (NM_001320509, intron 2 of 11)	intron (NM_001320509, intron 2 of 11)	818	NM_016437	27175	Hs.279669	NM_016437	ENSG00000037042	TUBG2	-	tubulin gamma 2	protein-coding
