rm HEK293_novel_snp_our_data.txt
while read line;do
    samtools mpileup -C 0 -r $line /Users/dsmith/Desktop/HEK293_known_snps/data/HEK293_bam_files/HEK293_aligned.sorted.bam >> HEK293_novel_snp_our_data.txt
done < HEK_novel_snp_paper_hg38_simple.txt
