analysis: set -o verbose;sleep 5;cd /metaphlan2;alias python=python3;cp /bbx/input/testing/*.fq.gz /bbx/tmp/;gunzip /bbx/tmp/*.fq.gz;metaphlan2.py /bbx/tmp/reads.1.fq,/bbx/tmp/reads.2.fq --bowtie2out /bbx/tmp/metagenome.bowtie2.bz2 --nproc $thread --input_type fastq > /bbx/tmp/profiled_metagenome.txt;cat /bbx/tmp/profiled_metagenome.txt;python3 /prepare_results.py genus;python3 /prepare_results.py species;> /bbx/output/bins.species.tsv;> /bbx/output/bins.genus.tsv;
