demo.2bed.fi: demo.bsp
	perl bin/bsp2bed_JE_v2.pl demo.bsp > demo.pairs.bed 2>demo.jlen.hist && Rscript bin/plot.bar.R demo.jlen.hist demo && touch demo.2bed.fi
demo.2ends.fi: demo.bsp
	perl bin/infer_jagged_ends.pl demo.bsp >demo.jagged.ends && Rscript bin/plot_MD.R demo.jagged.ends demo && touch demo.2ends.fi 
demo.2hist.fi: demo.2bed.fi
	perl bin/parse_jbed.pl demo.pairs.bed >demo.JE.exact.hist.v2 && Rscript bin/plot_all_MD_vs_size.R demo.JE.exact.hist.v2 demo && touch demo.2hist.fi 
all: demo.2bed.fi demo.2ends.fi demo.2hist.fi
