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## Code associated with "Single-cell analysis of human embryos reveals diverse patterns of aneuploidy and mosaicism". 

https://biorxiv.org/cgi/content/short/2020.01.06.894287v1

### Authors: Margaret R. Starostik, Olukayode A. Sosina, Rajiv C. McCoy

Analysis code to reproduce all results and figures is available within the `scripts` directory. Scripts should be run in numerical order (00, 01, 02, etc.). 

Code to perform genotyping and allele-specific expression analysis are provided within the `scripts/genotyping` directory. We also provide the summarized output of this analysis (chromosome-wide measurements of allelic imbalance) in the `results` directory. 
