## Contents

`aneuploidy_results.txt`  -  Aneuploidy calls for single cells. This file represents the output of `../scripts/02_detect_aneuploidy.R`.

`ase_by_chr.txt`  -  Summarized allelic imbalance results, provided as an alternative to running GATK HaplotypeCaller and ASEReadcounter from scratch.

`dge_results.txt`  -  Full output of differential expression analysis (i.e., an extended version of Table S2). 

`dge_celltype_interaction_results.txt` - Full output of cell type x aneuploidy interaction analysis.
