bootstrap: docker
From: continuumio/miniconda3

%post

## Add conda to path
export PATH=$PATH:/opt/conda/bin

## Update conda
conda update -n base -y -c defaults conda

## Install RNA-seq analysis software
conda create -n barcode-generator -y -c conda-forge -c bioconda \
r-tidyverse r-gtools

## Update rnaseq-automation environment
conda update -n barcode-generator -y -c conda-forge -c bioconda --all

## Clean up extra files
conda clean -y --all
