# Generated by roxygen2: do not edit by hand

export(add_feature_counts)
export(annotate_differential)
export(annotate_features)
export(count_normalization)
export(detect_features)
export(differential_expression)
export(dinucleotide_frequencies)
export(dominant_tss)
export(explore_thresholds)
export(export_for_enrichment)
export(find_correlation)
export(fit_edger_model)
export(genomic_distribution)
export(max_utr)
export(plot_average)
export(plot_correlation)
export(plot_detected_features)
export(plot_dinucleotide_frequencies)
export(plot_dominant_tss)
export(plot_genomic_distribution)
export(plot_heatmap)
export(plot_max_utr)
export(plot_sequence_colormap)
export(plot_sequence_logo)
export(plot_threshold_exploration)
export(plot_tsr_metric)
export(plot_volcano)
export(tsr_experiment)
export(tsr_explorer)
export(tsr_heatmap_matrix)
export(tsr_import)
export(tss_experiment)
export(tss_heatmap_matrix)
export(tss_import)
export(tss_sequences)
exportClasses(tsr_explorer)
import(ggplot2)
import(ggseqlogo)
import(methods)
import(tibble)
importFrom(BiocGenerics,width)
importFrom(Biostrings,DNAStringSet)
importFrom(Biostrings,consensusMatrix)
importFrom(Biostrings,getSeq)
importFrom(CAGEr,CAGEexp)
importFrom(ChIPseeker,annotatePeak)
importFrom(ComplexHeatmap,Heatmap)
importFrom(GGally,ggpairs)
importFrom(GenomicFeatures,makeTxDbFromGFF)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,GRangesList)
importFrom(GenomicRanges,findOverlaps)
importFrom(GenomicRanges,makeGRangesFromDataFrame)
importFrom(GenomicRanges,mcols)
importFrom(GenomicRanges,reduce)
importFrom(GenomicRanges,resize)
importFrom(GenomicRanges,score)
importFrom(GenomicRanges,width)
importFrom(Rsamtools,FaFile)
importFrom(Rsamtools,getSeq)
importFrom(TSRchitect,tssObject)
importFrom(circlize,colorRamp2)
importFrom(cowplot,plot_grid)
importFrom(dplyr,arrange)
importFrom(dplyr,between)
importFrom(dplyr,bind_cols)
importFrom(dplyr,bind_rows)
importFrom(dplyr,case_when)
importFrom(dplyr,count)
importFrom(dplyr,desc)
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,full_join)
importFrom(dplyr,group_by)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,mutate_at)
importFrom(dplyr,mutate_if)
importFrom(dplyr,n_distinct)
importFrom(dplyr,ntile)
importFrom(dplyr,pull)
importFrom(dplyr,rename)
importFrom(dplyr,select)
importFrom(dplyr,select_at)
importFrom(dplyr,summarize)
importFrom(dplyr,ungroup)
importFrom(dplyr,vars)
importFrom(edgeR,DGEList)
importFrom(edgeR,calcNormFactors)
importFrom(edgeR,cpm)
importFrom(edgeR,estimateDisp)
importFrom(edgeR,filterByExpr)
importFrom(edgeR,glmQLFTest)
importFrom(edgeR,glmQLFit)
importFrom(forcats,fct_reorder)
importFrom(forcats,fct_rev)
importFrom(grid,gpar)
importFrom(magrittr,"%>%")
importFrom(purrr,discard)
importFrom(purrr,map)
importFrom(purrr,map2)
importFrom(purrr,pmap)
importFrom(purrr,set_names)
importFrom(rtracklayer,import)
importFrom(stringr,str_split)
importFrom(tibble,tibble)
importFrom(tidyr,complete)
importFrom(tidyr,gather)
importFrom(tidyr,separate)
importFrom(tidyr,spread)
importFrom(tidyr,unite)
importFrom(viridis,viridis)
