Package: tsrexplorer
Title: TSS and TSR Analysis
Version: 0.1
Authors@R: 
    person(given = "Robert",
           family = "Policastro",
           role = c("aut", "cre"),
           email = "rpolicas@indiana.edu",
           comment = c(ORCID = "YOUR-ORCID-ID"))
Description: This package analyzes STRIPE-seq data by generating various plots and statistics related to TSSs and TSRs.
License: MIT
Encoding: UTF-8
LazyData: true
Imports:
    GenomicRanges,
    BiocGenerics,
    circlize,
    viridis,
    methods,
    grid,
    ComplexHeatmap,
    cowplot,
    ggplot2,
    stringr,
    dplyr,
    tibble,
    purrr,
    magrittr,
    tidyr,
    forcats,
    ggseqlogo,
    Rsamtools,
    GenomicFeatures,
    Biostrings,
    ChIPseeker,
    edgeR,
    GGally,
    TSRchitect,
    CAGEr,
    S4Vectors,
    SummarizedExperiment
Suggests:
    clusterProfiler
RoxygenNote: 6.1.1
Collate: 
    'annotate.R'
    'average_plots.R'
    'tsrexplorer.R'
    'convenience_methods.R'
    'correlation.R'
    'data_import.R'
    'diff_expression.R'
    'dinucleotide.R'
    'gene_plots.R'
    'genomic_distribution.R'
    'heatmaps.R'
    'misc_tss_plots.R'
    'motif.R'
    'normalize.R'
    'rnaseq.R'
    'thresholding.R'
    'tsr_plots.R'
