# Data S1. List of de novo mutations # A list of mutations identified in the study in .txt format. # Columns as ordered in the file include: # Proband ID, Chromosome, Position, Reference Allele, Alternate Allele, Variant Caller, and Phase (if identified). PROBAND CHROM POS REF ALT CALLER PHASE 234 chr1 102676820 T A Both M 316 chr1 113546787 G A Both NA 243 chr1 126967941 G C Both M 317 chr1 127283924 A G Both NA 317 chr1 133958924 G A GATK NA 314 chr1 142222512 T C freebayes NA 234 chr1 151688501 A C Both M 231 chr1 17146757 C T freebayes NA 231 chr1 175410597 G A Both NA 229 chr1 191685150 C T Both M 231 chr1 195991312 C T Both NA 226 chr1 213664705 A G Both M 234 chr1 216490579 A G freebayes NA 243 chr1 216718004 T C Both M 242 chr1 219631075 T A Both NA 318 chr1 220701187 G A freebayes NA 229 chr1 30089884 G A Both M 318 chr1 33985954 G A Both NA 318 chr1 36054230 A G Both NA 230 chr1 36877678 G A GATK NA 234 chr1 43976068 G A Both NA 318 chr1 44386262 A T Both NA 243 chr1 4446728 A C Both M 231 chr1 45300732 G A Both NA 229 chr1 46110776 G A Both M 226 chr1 50048745 T C Both M 243 chr1 54155725 T C Both M 243 chr1 81046728 T C Both M 243 chr1 91455792 G A freebayes NA 243 chr1 92748948 A G Both M 318 chr1 93007018 G A Both M 313 chr1 98709558 G A Both NA 231 chr10 29256615 C T Both NA 234 chr10 36647449 G A Both F 318 chr10 43011546 A G Both F 231 chr10 46905159 A G Both NA 316 chr10 59827907 C G Both NA 243 chr10 61177675 G T Both NA 234 chr10 6579398 G A Both M 234 chr10 66628325 G T Both M 227 chr10 84597230 C G GATK NA 313 chr10 84617356 G A Both NA 319 chr10 86157819 G A Both NA 227 chr10 87845695 A G Both M 234 chr10 88995948 C T Both M 242 chr10 90830493 C T GATK NA 313 chr10 91514646 G A freebayes NA 316 chr11 106805657 A G Both NA 234 chr11 11452547 C A Both F 234 chr11 119869394 G A Both M 318 chr11 127721554 A T Both M 313 chr11 129463064 G A Both M 229 chr11 2639369 C T Both M 242 chr11 39555001 C A Both NA 243 chr11 40917529 G T GATK M 234 chr11 43274706 G T Both M 226 chr11 51655633 C G Both F 243 chr11 52157070 T A Both M 313 chr11 52201193 G A Both M 234 chr11 55370460 C T Both NA 318 chr11 56033511 C T Both M 243 chr11 66703052 G A Both M 234 chr11 70514375 C A Both M 242 chr11 77012104 G A Both NA 313 chr11 7974578 C T Both M 231 chr11 84969235 A G freebayes NA 313 chr12 11154800 G A Both M 226 chr12 11606169 C T Both NA 313 chr12 123573314 T G GATK M 229 chr12 17533538 G A GATK NA 229 chr12 28930947 A G freebayes NA 234 chr12 3888160 C T Both M 319 chr12 46336674 G A freebayes NA 319 chr12 49746775 A G Both NA 317 chr12 50504833 G A freebayes NA 314 chr12 52745505 G A Both NA 243 chr12 52882014 A G Both M 318 chr12 59086295 C G Both M 318 chr12 65974351 C T GATK M 231 chr12 69107105 C T Both NA 230 chr12 86617049 A G Both NA 231 chr12 99916471 G A Both NA 242 chr13 101473524 G A Both NA 231 chr13 17196947 C A Both NA 226 chr13 18635797 C A GATK NA 316 chr13 21041953 G A Both NA 318 chr13 25383986 G A Both M 243 chr13 50443978 C T Both M 227 chr13 63283032 C T GATK M 314 chr13 73062431 T G GATK NA 243 chr13 79366461 C T Both M 318 chr13 88611709 G A Both M 316 chr13 9432131 C T GATK NA 317 chr13 95389571 G A Both NA 226 chr13 99923116 C T freebayes NA 317 chr14 103014494 C T Both NA 313 chr14 104321005 C T Both M 313 chr14 11151999 A G GATK NA 316 chr14 114609029 C T Both NA 314 chr14 11676347 T C GATK NA 314 chr14 120042593 C T Both NA 243 chr14 120295763 T C Both NA 318 chr14 123459520 A G freebayes NA 313 chr14 15063920 A G Both NA 316 chr14 26530428 C G Both NA 226 chr14 31712146 C A GATK NA 313 chr14 33484104 G A Both M 316 chr14 37483738 G A Both NA 230 chr14 38947023 G A Both NA 234 chr14 48318753 G T Both NA 313 chr14 57290621 G A Both F 231 chr14 61194211 G T Both NA 226 chr14 66519344 G A Both M 229 chr14 80166000 C T Both F 313 chr14 93769925 A G Both F 230 chr14 94977916 C T Both NA 313 chr14 9963723 A C freebayes NA 227 chr15 100057663 G A Both F 319 chr15 11131164 C T Both NA 317 chr15 18389986 C T Both NA 243 chr15 2601890 C T Both F 234 chr15 29938087 G A Both NA 243 chr15 36003531 G A Both NA 227 chr15 38962431 G A Both NA 227 chr15 40156801 G A Both M 243 chr15 45457584 A G Both F 313 chr15 54742709 T C freebayes NA 229 chr15 58457823 C T freebayes NA 230 chr15 64177077 C T Both NA 226 chr15 65096709 G A Both NA 313 chr15 65984673 C T Both F 318 chr15 67282918 A C GATK NA 313 chr15 68332535 A G Both M 319 chr15 7068373 A G Both NA 313 chr15 7615111 G A Both F 313 chr15 78001433 G A Both NA 314 chr15 81442224 C T Both NA 316 chr15 87978472 G A Both NA 227 chr15 8965916 G A freebayes NA 316 chr16 10046811 G A Both NA 316 chr16 10947696 C T Both NA 313 chr16 16891258 G A Both NA 313 chr16 39266287 C T Both M 226 chr16 49348516 G A Both M 242 chr16 51462090 G A GATK NA 234 chr16 56256095 G T Both F 226 chr16 57516769 A T Both F 243 chr16 58154223 G A Both NA 317 chr16 8639257 G A freebayes NA 234 chr17 10928183 C T Both F 230 chr17 15307770 A C GATK NA 243 chr17 15812875 G A Both M 313 chr17 16729440 C T Both NA 234 chr17 19705571 A T Both M 313 chr17 24712395 C T Both F 318 chr17 26472011 A G Both M 243 chr17 56588864 A T Both M 231 chr17 63156904 G A freebayes NA 226 chr17 7329473 T G Both F 316 chr17 74625708 C G Both NA 234 chr17 84955811 A G Both M 226 chr18 27180357 C T freebayes NA 313 chr18 28919396 G C Both NA 226 chr18 31406046 A G Both M 313 chr18 32974611 G A Both NA 243 chr18 47503464 A C GATK F 317 chr18 53911929 C T Both NA 314 chr18 60626286 G A Both NA 227 chr18 8251708 G C Both NA 316 chr18 871378 C T GATK NA 230 chr19 12797132 G C Both NA 243 chr19 14318101 C T freebayes NA 234 chr19 29638104 G A GATK M 316 chr19 40448775 T C GATK NA 227 chr19 51962858 T A GATK NA 231 chr19 8726011 C T Both NA 231 chr2 103907730 C A Both NA 316 chr2 107618171 G T Both NA 234 chr2 114923985 A T Both F 318 chr2 13396279 T C freebayes NA 243 chr2 138955047 G T Both M 243 chr2 146171921 G A Both NA 313 chr2 165153074 C T Both M 231 chr2 167145509 C T Both NA 242 chr2 174431837 G A Both NA 226 chr2 194607185 G T Both NA 226 chr2 196779541 T A freebayes NA 226 chr2 196779549 G A freebayes NA 313 chr2 19742244 T C Both NA 243 chr2 28834068 C T Both M 314 chr2 39102728 T A Both NA 243 chr2 41164005 G A Both M 226 chr2 43008962 T G freebayes NA 243 chr2 46144338 C T Both M 234 chr2 56746705 T A Both NA 317 chr2 66343443 C T Both NA 318 chr2 80382212 C T Both M 243 chr2 86120996 G T freebayes NA 313 chr2 92988659 C T freebayes NA 226 chr2 96370838 A G Both M 318 chr20 20434478 T C Both M 243 chr20 23716615 C A Both M 231 chr20 27840826 A G Both NA 313 chr20 28895335 G A Both M 243 chr20 3007949 C T Both NA 314 chr20 32793538 G A Both NA 318 chr20 42423576 A G Both NA 243 chr20 56493715 C T Both NA 226 chr20 66347270 T C Both F 231 chr20 69178337 G A GATK NA 231 chr20 71035655 C T GATK NA 230 chr20 7271251 C T Both NA 317 chr3 101249845 C G GATK NA 243 chr3 104367881 C A Both NA 229 chr3 109459400 G A Both M 318 chr3 110354988 A C Both NA 226 chr3 116676283 G C freebayes NA 317 chr3 119799648 G A Both NA 226 chr3 135489302 G A Both M 227 chr3 138964947 C T Both M 318 chr3 158889474 A G Both F 318 chr3 15913157 C T Both NA 243 chr3 160845974 G A freebayes NA 317 chr3 162520951 G A freebayes NA 318 chr3 172770822 C T Both F 318 chr3 176936858 T C Both F 234 chr3 179045896 G A Both M 316 chr3 181832064 G A GATK NA 313 chr3 23533252 T A freebayes NA 243 chr3 35831251 C T Both M 319 chr3 51037814 C G Both NA 227 chr3 59990064 G A Both NA 316 chr3 62253216 C T freebayes NA 234 chr3 77432398 G A Both M 230 chr3 84556296 A G Both NA 318 chr3 9000784 G A Both M 317 chr3 96832068 T G Both NA 317 chr4 107198607 G A Both NA 318 chr4 112438645 C T Both M 226 chr4 141585386 C T Both M 234 chr4 145349311 A G Both NA 317 chr4 154425293 G A Both NA 313 chr4 1588927 C A Both NA 242 chr4 169746304 T C Both NA 243 chr4 23867819 G C Both NA 243 chr4 31140926 C T Both M 318 chr4 45356538 G A Both NA 318 chr4 46164931 T C Both NA 231 chr4 5889047 T G Both NA 227 chr4 61798057 G A Both NA 234 chr4 62137468 A C Both M 319 chr4 66196704 A G GATK NA 316 chr4 70147257 T G Both NA 316 chr4 76359572 G A Both NA 231 chr4 77307238 C A Both NA 243 chr4 84299654 T C Both F 231 chr4 97695952 A G Both NA 226 chr5 107013589 G A Both M 231 chr5 112323505 G A Both NA 242 chr5 139337398 C T Both NA 231 chr5 141446790 G T Both NA 318 chr5 147540533 G C freebayes NA 318 chr5 150066472 C T Both M 226 chr5 15328367 A G GATK M 226 chr5 164584543 G A Both M 313 chr5 165073754 T G Both M 229 chr5 170938189 C T Both NA 243 chr5 171502463 G T Both NA 227 chr5 181835451 G A freebayes NA 318 chr5 182118446 A G Both M 243 chr5 186327183 G A freebayes NA 226 chr5 23694617 G A Both F 318 chr5 62492595 G A Both F 234 chr5 66726425 T C Both M 226 chr5 76696670 C T Both M 316 chr5 9915869 C T GATK NA 318 chr5 99998491 C T Both M 319 chr6 102609972 G A Both NA 230 chr6 106177093 C T Both NA 234 chr6 115203950 T C Both F 316 chr6 128964076 T C Both NA 319 chr6 149386461 G A Both NA 227 chr6 151794401 G A freebayes NA 243 chr6 152362521 G T Both F 234 chr6 159630150 A G Both NA 313 chr6 24236328 C A freebayes NA 319 chr6 27733235 A G Both NA 313 chr6 43800796 A T Both M 227 chr6 44963223 A G Both M 231 chr6 50325328 T C Both NA 314 chr6 56386484 C T Both NA 234 chr6 62360197 T G Both M 318 chr6 70097502 T C Both NA 314 chr6 73481391 G A Both NA 234 chr6 83512076 A C Both M 317 chr6 83851315 C G Both NA 318 chr6 85938644 T G Both F 231 chr6 90496490 C T Both NA 313 chr6 96793793 C T Both M 319 chr6 97134491 C T freebayes NA 226 chr6 97958951 C G Both M 313 chr7 106059353 A C Both M 317 chr7 125372985 G A Both NA 318 chr7 141413086 A G Both F 234 chr7 14706689 C T Both M 316 chr7 151661096 C T GATK NA 229 chr7 160224303 G T GATK M 317 chr7 18834207 G C freebayes NA 318 chr7 20912017 T C GATK NA 242 chr7 21939491 C T freebayes NA 313 chr7 26859874 A G freebayes NA 313 chr7 44865422 C T freebayes NA 243 chr7 49333136 C A Both M 316 chr7 72343818 G A Both NA 243 chr7 79096547 A C Both NA 243 chr7 79562975 C T freebayes NA 227 chr7 91264268 G A Both NA 234 chr7 98190337 C T Both M 313 chr8 108506526 G A GATK M 231 chr8 109561216 C T Both NA 227 chr8 118239251 C A Both M 243 chr8 122412189 C A Both M 243 chr8 137879370 C T Both M 242 chr8 138805977 C T Both NA 316 chr8 140486806 C T Both NA 243 chr8 143739829 C T GATK M 316 chr8 17885767 G A Both NA 313 chr8 23289171 C T freebayes NA 229 chr8 31051024 A G Both F 227 chr8 38937979 C T GATK M 230 chr8 43042624 G A GATK NA 226 chr8 45345405 G A Both M 243 chr8 54275046 T C Both NA 314 chr8 56518091 C T Both NA 317 chr8 64399964 A G Both NA 317 chr8 91033839 C T Both NA 243 chr8 95239970 A G Both M 230 chr9 101327273 G A Both NA 226 chr9 107897638 A G Both NA 243 chr9 109045829 A T GATK M 231 chr9 111053399 T A Both NA 314 chr9 117604879 C T Both NA 313 chr9 118231006 G A Both M 242 chr9 1745832 G A freebayes NA 243 chr9 36204216 C G Both F 318 chr9 77746923 A G Both NA 318 chr9 8129998 G A Both F 318 chr9 87239208 G A Both NA 242 chr9 88328090 C G Both NA 231 chr9 8897202 T G Both NA 314 chr9 91287912 G A Both NA