Annotated_3UTR=GRCh38_GENCODEv22_extracted_3UTR.bed
Group1_Tophat_aligned_Wig=/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/00f50c20-cc6c-4a4e-a298-b7b5c02acc37_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/023b2621-16ad-4f59-80dd-0b5a1fa034cd_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/032c9d87-0382-4c02-bacd-8d547247c58b_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/04410958-b479-494a-a899-f1a4ff8351eb_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/04e99e73-c82f-4cbb-887c-7af5af44d562_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/05a0a1cc-b920-4724-9eb6-f11087c7502f_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/082975ff-e413-499d-9a30-6db504b5948b_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/0a84d306-9e5d-464b-a07a-6868f87a8475_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/0c9e36f8-fb1b-4ed5-92cd-795db2d754c7_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/1267c52a-607b-4d96-9d1e-49e18abe059d_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/12e32fc2-9798-43ed-926c-d6303dfe0005_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/13b1ef05-b379-46bd-b171-ae50eead5bc1_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/18fb43de-a759-4d81-af05-bf226a851516_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/1a59d85d-5126-4496-ae00-0b0aac21ea1d_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/1b8bb817-80ad-4c33-a3b1-e672e451a681_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/24599562-ed81-40af-9278-69ad5eaa1856_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/24882cc0-65e9-4664-b4ad-78db73a4851d_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/24c6110f-257e-49c1-9900-dd36a4d026b9_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/2566b016-7a7a-46c3-a927-44c2d9270bec_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/25e2f8ba-1281-4415-bb9b-e087b02f8640_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/26648bcd-791f-421a-8a21-6bca40fb0bc4_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/2d79b502-81a7-4c4d-b64e-27510f78e102_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/31c7bbae-e746-40b9-b4ce-f8382aa585a1_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/3314e6ad-5a95-41e4-968d-6ea81f92b657_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/336db498-7e12-4418-91a8-916c4b6c4e9c_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/37a74865-8c2d-429a-a6c9-529923120bc9_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/37c5acdc-7406-4ea3-a7d0-ac572b738730_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/3832f8e8-e016-411b-9602-e10258822f40_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/38982ff6-1a5e-4d9c-87b5-baec92345895_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/390e2f54-396e-41f2-892f-3630fae20904_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/39aa1922-eec5-48c5-a1e8-7c5d51a2420e_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/39b00e39-bfac-406a-85b0-1af3cb903936_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/39be0248-dfa2-475c-a827-37ac6d2a5fea_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/3cdddf24-4254-4c61-ac0d-5470d33b1538_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/3f3a6337-c999-43f6-b358-81516e8af6bd_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/3fc3924b-39c0-4ec1-bca7-195579a6f9dd_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/4057dc1d-b878-4664-a5cf-6298302adf56_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/40fb7463-3e9a-4139-90ce-95a54f0faafc_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/43140212-aab2-41b7-9fe1-4c3de584b97b_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/48d091d1-3ac6-4525-aaa7-61af8e72e08f_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/4acc709f-8cea-4b23-9493-cfbec58de672_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/4eaa3248-1a00-4dc2-8e96-78b85e7c082f_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/4fdad925-7c7b-43a4-9e29-40c58a33fb0b_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/527020ed-8bfb-4819-9781-d26c2442031a_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/53890985-edeb-4d8b-b16f-957f36271744_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/5407e2ae-4795-44cf-9206-cea5d527a05c_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/54c75aee-6817-4cdf-818d-aa74fc439b21_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/55da69af-11f6-4697-9e9a-1ebce0fb22f7_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/591094bb-bead-4f1f-be99-c91e989747cc_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/5a57033c-6c41-4698-8ef2-5cc700c6d16b_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/5a683fae-9f67-4e74-95b7-586f8b0a820b_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/5b82013f-4a4a-4096-8e19-669ed3d529c9_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/5faced68-b4cb-4364-b835-0d8f94634924_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/6057cb66-a523-497b-a575-bc6583fdc5e3_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/61175329-4716-46e1-9dfb-927b55f03e4d_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/61b89d67-7a81-47dc-a4b8-bf172dfc8529_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/6246917f-9689-4c6f-be62-5b283807757d_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/62b9345f-47c6-4cd9-b25c-5ac354d7307f_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/637581d5-ee54-46b4-9143-cc4ff65ab691_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/6499f681-1ded-4217-915f-8b0b612526a3_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/6695d37c-cd34-4338-a044-82bf17710c90_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/69ccac0d-3358-4c46-85d8-0c331b5dd996_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/6c2152fa-8c8f-4d23-87c2-2fbc5388b64f_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/6e58338c-407f-4ad4-819c-fc5807a1f4f3_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/6e7566e1-01a7-4e9f-8449-9923f3a5e664_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/71cb29b7-e163-4fd6-83aa-4cf86e2fad62_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/72cbcde8-3505-479d-a9b6-893f5c5ddb4d_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/72cefa08-0eba-4da8-bbf9-2ce0bab2579f_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/78de0880-f388-4c63-a7aa-46f8ce1fa530_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/792ed772-fe35-4896-9f8c-c9e3f6654ee8_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/7f3e4d3a-d53b-4f40-9246-e69f24b12de5_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/819229c6-76be-4eca-97a8-19a5df8dca29_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/81d8b079-369a-4a86-9ec9-6a20de517d45_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/86c85dcc-406a-48c0-ba7d-ab351d89805d_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/88198d22-49bb-4861-9ee8-7de921fcef91_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/8ba923e0-c6e5-4209-a88a-3e2ad208c993_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/8be93857-5fef-4e2d-9430-d510f4250748_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/9143e4bf-a913-4f36-a4b0-ccee51f6fbdd_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/9182acae-5300-463a-9980-2745a54b61a6_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/934ec7ba-1287-446b-8232-a080af9db364_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/94b39980-23a2-4178-9bec-8b63acbd4c71_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/94df9e2f-4007-4d1f-86e8-84c9f7df3339_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/950ccc92-d5b6-4327-b8c6-77449c1e986c_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/9624e101-a4a3-4c7c-b774-65b8ab40dcbe_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/9723bf96-f5d4-4c69-9939-7159aa3891b7_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/97906ed6-7558-4a18-856c-7a246e5b9316_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/97e30335-dea7-4a3f-965e-5651ffa9cc93_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/9860f40f-72dd-4e6f-bbc4-0697eed66146_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/999b31a4-b9fe-44c2-97c0-33dd7b0eea38_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/9c6a75d7-b90e-4ca0-92d8-c4ff702f0d4b_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/9cd5b17d-ca10-494d-9ae8-1d954808eeef_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/9dbeb4fe-fc8e-49aa-8231-28135c73d6cf_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/9dc635b7-230e-4f10-993c-a473d87d9755_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/9e5c1d45-8e40-43c5-8c96-4e519081bca7_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/9f638909-585f-48fd-97c3-f6c10b5c2461_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/a0482aca-dc2f-4ac0-a785-b7067df1ad9d_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/a0bbcf1d-3a05-41c6-9316-ae454e184205_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/a2468381-bf6c-4f08-911e-ec39c1253add_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/a42361c0-3f07-4ed5-a225-422bb02cdeaa_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/a50290cc-6319-4568-989e-9c226c3dafe2_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/a6623d3c-7986-49d4-845d-53d8321716aa_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/a964eef4-144d-40f1-8f2e-17be443fce44_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/a99a4c93-0458-4dad-8de0-e37ff418450a_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/aa2d34f7-fcbe-4a5f-8937-2e971f6bf12b_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/aa7e4a9e-985f-4fb0-860d-d7ea082291c8_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/ad02a82e-06e5-40a1-ba47-bbe88f631806_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/b0c17f28-661c-40fb-b463-e991ba7dfac1_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/b47a759a-6149-4315-90e5-a8aae9ed63ba_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/b56f5aba-d309-4d9d-9625-090d8cfcd388_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/b57db06f-22b3-4be2-bcd7-4e68e5827ad7_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/baed260a-33e2-463f-8ab1-6ed74b7cb8ef_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/bd61eb8b-be17-457b-a884-abc828485d08_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/bd712064-0eca-4d2a-a972-76dbc334825d_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/bdbadb1f-1e83-4bfc-bd56-38bd038be67e_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/c1c72b33-b1c3-4ccb-bc6b-e44270d4a6bd_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/c530390a-db18-437e-8147-f62af3b9683a_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/c5cea927-6b60-4f8b-a000-ad3b6d45739e_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/c95ecb89-585a-46e0-ad80-a7a1b299dfd8_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/c96cd501-f4a8-4d2c-9872-35871c7e3731_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/cad7018e-c2a8-456f-b4c2-48d69bf3da86_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/d0ca1b4d-827c-4070-b67b-5a7c4e6aa251_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/d1a437aa-610c-4ae1-8945-668413aa0ef5_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/d2b66bb4-498a-410e-ad54-574cc6a8a838_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/d4fe073e-f78d-46d7-bcc2-6cfebf30fd8f_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/d9eb1808-62bb-4451-9435-413ff61d871f_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/dc5cc8e2-2dba-4ba1-9756-8ae7f79e39a8_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/dea8f549-044a-43ad-a1ea-42d6e7c27955_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/df6a25a8-ae4a-470c-8caa-4639760b86a3_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/e117a248-d276-400b-99a5-f2ffecc234a4_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/e1862af0-b2d9-4a77-9cc9-9963cec5f93c_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/e2b124ea-ebb6-425e-be32-ae31a480514b_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/e5151abc-0466-44d3-a285-df52ca3fb1ed_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/e8b3aebe-12e7-41cd-8187-5b4a09746f72_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/ea71dc98-33b0-42bf-9142-72b4079d5e49_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/ee7aa940-b0e1-4d15-a81c-5c2d0ae10ff5_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/ef5e5f4c-33a1-4dfc-badd-2dda9874d75b_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/f0da3168-3cd7-439a-9c36-74347de8d264_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/f3ea2be0-50df-4484-ab43-51e5a5ecc6ac_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/f5704e44-5d98-4d4c-a263-7f13ab3a4640_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/f5aa8414-d241-4453-bdd7-689172a58f6e_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/f613373a-be1e-4f45-8604-e5a24720b294_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/f6d4b8ac-ed02-4533-8624-fb6198fe9a43_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/f7173317-45d4-4090-93f1-90640300f1f0_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/f78b25cf-adb9-47e4-807f-8e25478a7610_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/fc69b1ef-5f1d-4bfe-8b76-4c424969e773_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/fe475b4c-7a12-4ecc-9db6-767e1dcc45be_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/fe8087e9-bed6-4cb0-a7f4-f0c83f6a109e_gdc_realn_rehead_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/TCGAPanCancer/ff6a908c-aab3-498a-87b3-8a8e5d62bc42_gdc_realn_rehead_hg38.bedgraph
Group2_Tophat_aligned_Wig=/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1069352_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1070403_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1070764_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1071519_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1072007_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1072104_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1072972_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1073021_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1073167_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1073991_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1074090_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1074385_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1075174_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1075336_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1076244_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1076868_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1078066_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1079754_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1080624_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1082080_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1082544_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1084323_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1085187_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1085310_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1086070_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1087728_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1088291_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1088413_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1088537_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1089537_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1089688_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1091032_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1091144_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1092937_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1093340_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1093434_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1093577_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1095407_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1095479_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1095651_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1097777_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1097883_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1098192_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1098543_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1098928_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1099833_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1100800_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1101542_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1120363_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1307808_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1309875_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1310690_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1311752_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1317387_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1318503_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1319118_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1321765_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1322028_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1322730_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1322816_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1324102_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1324519_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1326020_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1327303_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1327872_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1328738_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1330901_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1331037_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1334314_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1335984_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1338513_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1339788_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1340047_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1341626_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1343967_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1347959_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1353461_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1354338_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1357541_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1357618_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1358645_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1360766_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1361692_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1365471_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1365575_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1365743_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1367630_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1374373_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1374585_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1374739_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1376718_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1377492_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1380886_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1381140_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1381505_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1381953_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1382440_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1383037_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1388064_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1389409_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1390203_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1390456_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1393572_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1394275_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1397744_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1397762_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1398863_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1401528_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1402091_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1403412_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1403611_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1404507_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1404856_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1407334_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1409084_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1414161_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1414613_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1415919_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1415938_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1416074_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1416362_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1416773_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1417524_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1418302_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1418433_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1421048_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1429912_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1430202_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1431121_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1431493_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1431948_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1434436_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1434999_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1435857_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1436187_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1440032_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1442127_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1443633_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1445939_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1445960_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1447760_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1452556_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1453047_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1453277_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1453893_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1453991_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1454289_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1455631_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1455783_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1457682_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1457727_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1458992_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1464226_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1464724_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1465674_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1466321_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1468787_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1468931_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1472728_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1474908_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1475128_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1480347_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1481146_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1487764_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1487784_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR1490404_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR2166708_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR2166748_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR656457_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR656982_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR657077_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR663645_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR665405_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR808590_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR810761_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR811029_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR811607_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR812598_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR813208_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR816541_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR819771_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR821050_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR821231_hg38.bedgraph,/mnt/lustre/users/svenkat/Research/APA/BAMFiles/GTeXNormal/SRR821666_hg38.bedgraph
Output_directory=/mnt/lustre/users/svenkat/Research/APA/DaParsRun2/
Output_result_file=DaParsRun2_146GENCODE

#Parameters
Num_least_in_group1=1
Num_least_in_group2=1
Coverage_cutoff=30
FDR_cutoff=0.05
PDUI_cutoff=0.4
Fold_change_cutoff=0.59

