fastafile_dna_p	FIRE_DATA/RAT/SEQUENCES/rat_u_
fastafile_dna	FIRE_DATA/RAT/SEQUENCES/rat_u_1000_1000.fa
seqlen_u_dna	1000
seqlen_d_dna	1000
seqlen_dna	2000
rightlabel_dna	1000
leftlabel_dna	-1000
fastafile_rna	FIRE_DATA/RAT/SEQUENCES/rat_3_0_300.fa
seqlen_rna	300
rightlabel_rna	300
leftlabel_rna	0
acelibrary_dna	FIRE_DATA/RAT/MOTIFNAMES/UPSTREAM_ALL/*.ace
micrornas	FIRE_DATA/RAT/MOTIFNAMES/MIRNAS/mirnas.seq
