../../05diff_exp_start50/01_gff_st1_60nt/SA03_genes_stat1_spar_60nt_start60.gff ../../../../04analyses_RPF/02mapping_ps/results_merged/RPF_CC1_allonA03_IDBA.fapseudoscaff_sorted.bam ../../../../04analyses_RPF/02mapping_ps/results_merged/RPF_CC2_allonA03_IDBA.fapseudoscaff_sorted.bam ../../../../04analyses_ARNtot/02mapping_ps/results_merged/T_CC1allonA03_ps_sorted.bam ../../../../04analyses_ARNtot/02mapping_ps/results_merged/T_CC2allonA03_ps_sorted.bam
../../05diff_exp_start50/01_gff_st1_60nt/SD01_genes_stat1_spar_60nt_start60.gff ../../../../04analyses_RPF/02mapping_ps/results_merged/RPF_AA1_allonD01_IDBA.fapseudoscaff_sorted.bam ../../../../04analyses_RPF/02mapping_ps/results_merged/RPF_AA3_allonD01_IDBA.fapseudoscaff_sorted.bam ../../../../04analyses_ARNtot/02mapping_ps/results_merged/T_AA1allonD01_ps_sorted.bam ../../../../04analyses_ARNtot/02mapping_ps/results_merged/T_AA3allonD01_ps_sorted.bam
../../05diff_exp_start50/01_gff_st1_60nt/SD06_genes_stat1_spar_60nt_start60.gff ../../../../04analyses_RPF/02mapping_ps/results_merged/RPF_BB1_allonD06_IDBA.fapseudoscaff_sorted.bam ../../../../04analyses_RPF/02mapping_ps/results_merged/RPF_BB3_allonD06_IDBA.fapseudoscaff_sorted.bam ../../../../04analyses_ARNtot/02mapping_ps/results_merged/T_BB1allonD06_ps_sorted.bam ../../../../04analyses_ARNtot/02mapping_ps/results_merged/T_BB3allonD06_ps_sorted.bam
../../05diff_exp_start50/01_gff_st1_60nt/Y128_genes_stat1_spar_60nt_start60.gff ../../../../04analyses_RPF/02mapping_ps/results_merged/RPF_Cer1_allonYPS128_IDBA.fapseudoscaff_sorted.bam ../../../../04analyses_RPF/02mapping_ps/results_merged/RPF_Cer3_allonYPS128_IDBA.fapseudoscaff_sorted.bam ../../../../04analyses_ARNtot/02mapping_ps/results_merged/T_Cer1allonYPS128_ps_sorted.bam ../../../../04analyses_ARNtot/02mapping_ps/results_merged/T_Cer3allonYPS128_ps_sorted.bam
../../05diff_exp_start50/01_gff_stall_60nt/SA03_orf_statall_spar_start60.gff ../../../../04analyses_RPF/02mapping_ps/results_merged/RPF_CC1_allonA03_IDBA.fapseudoscaff_sorted.bam ../../../../04analyses_RPF/02mapping_ps/results_merged/RPF_CC2_allonA03_IDBA.fapseudoscaff_sorted.bam ../../../../04analyses_ARNtot/02mapping_ps/results_merged/T_CC1allonA03_ps_sorted.bam ../../../../04analyses_ARNtot/02mapping_ps/results_merged/T_CC2allonA03_ps_sorted.bam
../../05diff_exp_start50/01_gff_stall_60nt/SD01_orf_statall_spar_start60.gff ../../../../04analyses_RPF/02mapping_ps/results_merged/RPF_AA1_allonD01_IDBA.fapseudoscaff_sorted.bam ../../../../04analyses_RPF/02mapping_ps/results_merged/RPF_AA3_allonD01_IDBA.fapseudoscaff_sorted.bam ../../../../04analyses_ARNtot/02mapping_ps/results_merged/T_AA1allonD01_ps_sorted.bam ../../../../04analyses_ARNtot/02mapping_ps/results_merged/T_AA3allonD01_ps_sorted.bam
../../05diff_exp_start50/01_gff_stall_60nt/SD06_orf_statall_spar_start60.gff ../../../../04analyses_RPF/02mapping_ps/results_merged/RPF_BB1_allonD06_IDBA.fapseudoscaff_sorted.bam ../../../../04analyses_RPF/02mapping_ps/results_merged/RPF_BB3_allonD06_IDBA.fapseudoscaff_sorted.bam ../../../../04analyses_ARNtot/02mapping_ps/results_merged/T_BB1allonD06_ps_sorted.bam ../../../../04analyses_ARNtot/02mapping_ps/results_merged/T_BB3allonD06_ps_sorted.bam
../../05diff_exp_start50/01_gff_stall_60nt/Y128_orf_statall_spar_start60.gff ../../../../04analyses_RPF/02mapping_ps/results_merged/RPF_Cer1_allonYPS128_IDBA.fapseudoscaff_sorted.bam ../../../../04analyses_RPF/02mapping_ps/results_merged/RPF_Cer3_allonYPS128_IDBA.fapseudoscaff_sorted.bam ../../../../04analyses_ARNtot/02mapping_ps/results_merged/T_Cer1allonYPS128_ps_sorted.bam ../../../../04analyses_ARNtot/02mapping_ps/results_merged/T_Cer3allonYPS128_ps_sorted.bam
