.. diffTF documentation master file, created by
   sphinx-quickstart on Thu Nov 30 13:16:14 2017.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

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Welcome to the documentation of *diffTF*!
=========================================

Welcome to the *diffTF* documentation, and thank you for the interest in our software! These pages provide documentation and additional information for the *diffTF* pipeline.

To get yourself oriented, check the menu on the left or search what you are looking for in the search field in the upper left corner.


This site is organized into the following three parts:


.. toctree::
   :maxdepth: 2
   :caption: Quick Start and Installation

   chapter1.rst

.. toctree::
   :maxdepth: 2
   :caption: Pipeline Details

   chapter2.rst

.. toctree::
  :maxdepth: 2
  :caption: Project Information

  projectInfo.rst
