CHROM POS ID QUAL REF ALT FILTER X1.NC.pop.AD X2.NL.pop.AD X3.PD.pop.AD X4.PA.pop.AD X5.MD.pop.AD X6.MA.pop.AD MA_25 MA_26 MA_27 MA_28 MA_29 MA_30 MA_31 MA_32 MA_33 MA_34 MA_35 MA_36 MA_37 MA_38 MA_39 MA_40 MA_41 MA_42 MA_43 MA_44 MA_45 MA_46 MA_47 MA_48 MA_85 MA_86 MA_87 MA_88 MA_89 MA_90 MA_91 MA_92 MA_93 MA_94 MA_95 MD_10 MD_11 MD_12 MD_13 MD_3 MD_4 MD_5 MD_7 MD_8 MD_9 PA_26 PA_27 PA_28 PA_29 PA_31 PA_32 PA_38 PA_39 PA_40 PA_41 PA_42 PA_43 PA_46 PA_47 PA_48 PA_49 PA_51 PA_52 PA_53 PA_54 PA_55 PA_57 PA_58 PA_59 PA_61 PA_62 PA_63 PA_64 PA_65 PA_68 PA_70 PA_71 PA_73 PA_74 PA_77 PD_1 PD_14 PD_16 PD_17 PD_18 PD_20 PD_5 PD_7 PD_8 PD_9 PDD_1 PDD_10 PDD_11 PDD_12 PDD_13 PDD_14 PDD_15 PDD_16 PDD_17 PDD_18 PDD_19 PDD_2 PDD_20 PDD_21 PDD_22 PDD_23 PDD_24 PDD_25 PDD_26 PDD_27 PDD_28 PDD_29 PDD_3 PDD_30 PDD_31 PDD_32 PDD_33 PDD_34 PDD_35 PDD_36 PDD_37 PDD_38 PDD_39 PDD_4 PDD_40 PDD_41 PDD_42 PDD_43 PDD_44 PDD_45 PDD_46 PDD_47 PDD_48 PDD_49 PDD_5 PDD_50 PDD_51 PDD_52 PDD_53 PDD_54 PDD_55 PDD_56 PDD_57 PDD_58 PDD_59 PDD_6 PDD_60 PDD_61 PDD_62 PDD_63 PDD_64 PDD_65 PDD_66 PDD_67 PDD_68 PDD_69 PDD_7 PDD_70 PDD_71 PDD_72 PDD_73 PDD_74 PDD_75 PDD_76 PDD_77 PDD_78 PDD_79 PDD_8 PDD_80 PDD_81 PDD_82 PDD_83 PDD_84 PDD_85 PDD_86 PDD_87 PDD_88 PDD_89 PDD_9 PDD_90 PDD_91 PDD_92 PDD_93 PDD_94 PDD_95 PDD_96
chr2 175779934 . 93570.71 C A LOW_VQSLOD 62,1 47,0 52,1 24,24 0,1 36,23 84,0 302,1 359,0 10,0 80,2 44,37 16,18 216,1 NA 2,2 0,5 76,30 18,562 6,0 241,2 154,6 113,13 19,0 40,1 72,0 13,1 147,9 198,1 27,0 1,47 2,37 32,184 242,0 10,0 84,0 7,1 12,22 6,1 17,0 118,0 268,0 3,0 9,0 5,0 17,1 1,0 12,0 NA 6,0 10,0 76,49 6,2 14,87 0,39 0,2 32,0 3,110 4,611 31,2 42,4 124,6 2,0 19,60 1,5 21,9 5,22 41,2 162,0 8,3 240,0 54,0 225,6 43,90 61,25 0,46 9,11 8,35 7,0 24,1 28,36 294,124 4,5 15,5 242,140 35,326 43,2 5,0 4,1 34,1 NA 0,1 8,1 NA 25,1 7,0 1013,1 9,0 203,0 691,1 5,0 49,0 464,0 193,0 52,0 261,0 79,0 685,1 191,0 1,0 131,0 1482,1 219,0 191,0 539,1 443,0 88,0 NA 657,1 18,0 392,0 139,0 138,0 161,0 3,0 64,0 119,0 340,0 49,0 340,0 7,0 38,0 250,0 243,0 143,0 132,0 58,0 144,0 17,0 125,0 154,0 646,0 54,0 407,1 161,0 61,0 77,0 14,0 148,0 128,0 687,0 248,0 24,0 603,0 606,1 28,0 25,0 173,0 59,0 245,1 310,2 120,0 86,0 52,0 662,0 294,0 65,0 134,0 6,0 71,0 13,0 38,0 539,0 317,0 173,0 203,0 48,0 7,0 67,0 8,0 163,0 67,0 70,0 92,0 67,0 21,0 66,0 73,0 64,0 7,0 4,0 69,0
chr3 60412480 . 23511.72 G C LOW_VQSLOD 54,0 56,0 76,6 56,15 2,0 61,3 3,0 73,0 325,0 36,0 34,0 2,1 93,0 0,2 NA 92,0 60,0 4,125 31,0 1,0 182,1 119,0 7,1 0,2 0,132 86,0 NA 2,11 65,14 17,0 99,0 28,2 31,19 7,0 18,2 185,1 234,0 NA 3,10 18,10 8,10 21,0 337,0 6,0 177,0 39,0 3,0 116,0 24,0 1,0 20,0 4,0 561,1 40,0 55,1 2,0 233,3 55,4 7,3 43,3 234,12 239,38 NA 5,0 25,8 3,9 238,0 3,33 304,4 291,11 6,0 14,2 3,2 3,3 88,0 25,1 170,6 54,2 11,11 21,4 232,246 12,41 135,1 16,18 7,5 155,0 44,0 1,0 40,0 NA 1,0 4,0 NA 24,0 11,0 2,0 56,0 132,0 32,0 249,0 4,0 62,0 5,0 46,0 46,0 27,0 74,0 428,0 221,0 4,0 15,0 322,0 268,0 35,0 86,0 17,0 68,0 NA 55,0 192,0 2,0 12,0 6,0 9,0 159,0 653,0 293,0 44,0 168,0 38,0 220,0 133,1 136,0 116,0 22,0 156,0 149,0 46,0 56,0 10,0 174,0 111,0 36,0 132,0 2,0 92,0 17,0 25,0 7,0 105,0 15,0 131,0 7,0 34,0 133,0 62,0 47,0 86,0 92,0 61,0 15,0 97,0 56,0 115,1 31,0 1,0 44,0 13,0 368,0 489,0 100,0 214,0 694,0 104,0 101,0 54,0 12,0 19,0 64,0 5,0 146,0 NA 9,0 24,0 81,0 164,0 54,0 58,0 182,0 28,0 74,0 NA
chr5 112175328 . 159102.66 C A PASS 320,1 288,0 246,3 149,59 113,8 161,78 1257,2 293,0 135,4 200,3 8,0 147,17 154,36 23,5 121,230 766,60 1895,7 12,243 9,59 2,0 640,2 921,23 99,1 7,2 14,4 95,259 12,1 57,2 24,80 167,702 11,0 20,142 60,5 858,76 116,0 1371,4 10,139 151,2 30,18 22,0 431,24 378,1 1500,1 2340,4 21,0 13,0 8,0 15,0 1632,1 8,0 53,1 6,11 345,2 25,85 586,212 NA 212,6 991,130 1,16 55,5 37,55 78,1585 208,1 30,0 56,5 16,7 1022,1 814,10 266,5 38,84 602,1 16,13 219,45 6,4 5,15 201,0 7,10 56,377 1,0 33,0 9,20 27,79 493,1 25,0 134,3 34,0 1553,6 459,1 217,2 697,2 178,2 39,0 35,0 446,0 47,0 278,0 104,0 260,0 129,0 32,0 7,0 68,0 63,0 3,0 7,0 91,0 195,0 85,0 82,0 6,0 205,0 87,0 425,0 46,0 797,2 307,1 137,0 NA 71,0 57,0 9,0 70,0 2,0 82,0 540,0 555,2 14,0 542,0 646,0 58,0 573,0 93,0 4,0 72,0 668,0 45,0 209,0 525,1 193,0 188,0 111,0 78,0 27,0 88,0 153,0 34,0 138,0 289,0 185,0 26,0 46,1 605,0 8,0 23,0 11,0 4,0 5,0 183,0 96,0 67,0 485,0 23,0 111,0 35,0 65,1 60,0 269,0 403,0 64,0 15,0 152,0 196,0 161,0 402,1 369,0 155,0 33,0 61,0 222,0 224,0 133,0 42,0 8,0 70,0 123,0 430,0 783,1 22,0 42,0 9,0 107,0 35,0
chr13 52534322 . 100066.11 G C LOW_VQSLOD 113,1 97,0 105,2 107,20 8,0 192,6 4,0 2,0 66,1 28,0 414,2 723,33 301,407 438,82 222,3 1983,270 1499,0 628,59 468,0 71,4 1049,29 394,1 77,1 1494,9 205,434 195,2 890,5 1209,274 98,264 59,1 886,3 820,3 11,2 8,17 59,433 284,9 179,1 833,14 82,10 18,3 156,22 128,1 460,2 679,0 3,0 7,0 9,0 1,0 19,0 2,0 256,0 142,350 136,0 7,4 63,22 3,2 84,3 1158,242 747,0 72,13 55,22 14,0 580,1 2,1 324,7 960,4 16,1 141,1 35,0 12,1 362,1 118,25 6,252 86,4 62,219 238,16 6,0 382,3 5,33 523,2 291,0 115,0 5,0 16,0 5,1 57,0 678,1 NA 6,0 48,0 11,0 2,0 496,2 24,1 33,0 3,0 150,0 90,0 1192,2 16,0 5,0 90,1 2,0 35,0 625,0 1648,0 1328,0 732,1 329,0 NA 317,1 1182,0 308,1 753,0 99,0 453,0 146,0 NA 209,0 36,0 3,0 96,0 240,0 451,1 21,0 71,0 70,0 256,0 1409,0 354,0 62,0 552,1 904,0 58,0 294,0 2495,1 592,0 319,0 19,0 16,0 58,1 474,0 6,0 88,0 172,1 828,1 470,0 794,0 147,0 33,0 392,0 1072,0 16,0 36,0 219,0 289,0 265,0 1172,0 3,0 16,0 102,0 151,0 467,0 432,1 233,0 93,0 5,0 21,0 169,0 39,0 58,0 358,0 333,0 30,0 503,1 161,0 24,0 421,0 344,0 1909,0 365,1 221,0 289,0 200,0 40,0 523,1 98,0 224,0 550,0 85,0 8,0 103,0
