Species Locus_number phylostratigraphy_based_arrayAge downstreamSynteny upstreamSynteny arrayAge_(phylostratigraphy+synteny,0=species-specific,1=Obir+Sinv,2=Ants+Amel,3=Aculeata+Nvit) Sinv 1 singleton 1 Sinv 2 species 0 Sinv 3 Formicidae Obir37 Obir37 1 Sinv 4 Formicidae 1 Sinv 5 Aculeata Obir54 Obir54 3 Sinv 6 species 0 Sinv 7 singleton Obir2,Amel9 Obir2,Amel9 3 Sinv 8 species Obir20 Obir20 0 Sinv 9 Hymenoptera Obir57,Amel27 Obir57,Amel27 3 Sinv 10 singleton Obir90 Obir90 1 Sinv 11 singleton 1 Sinv 12 singleton 1 Sinv 13 singleton 1 Sinv 14 singleton Obir80 Obir86 3 Sinv 15 Formicidae Obir86 1 Sinv 16 singleton 1 Sinv 17 species 0 Sinv 18 Formicidae 1 Sinv 19 singleton 1 Sinv 20 species 0 Sinv 21 Aculeata Obir85,Amel7,Nvit32 Obir85,Amel7,Nvit32 3 Sinv 22 singleton 1 Sinv 23 singleton Amel28 2 Sinv 24 Hymenoptera Nvit79 3 Sinv 25 singleton 1 Sinv 26 singleton 1 Sinv 27 Hymenoptera Obir3 Obir3 3 Sinv 28 Formicidae Obir52 Obir52 1 Sinv 29 singleton Obir77 Obir77 1 Sinv 30 Formicidae Obir23 Obir23 1 Sinv 31 singleton Obir22,Amel5 Obir22,Amel5 3 Sinv 32 Formicidae Obir19 3 Sinv 33 singleton Obir31 Obir31 1 Sinv 34 Formicidae Obir39 Obir39 1 Sinv 35 singleton 1 Sinv 36 singleton Obir19,Amel3 Amel3,Nvit35 3 Sinv 37 Aculeata Obir17 Amel21 2 Sinv 38 Formicidae Obir47,Amel11 Obir47,Amel11 2 Sinv 39 singleton Obir72,Amel2,Nvit49 Obir72,Amel2,Nvit49 3 Sinv 40 Hymenoptera Obir69,Nvit9,Nvit13 Obir69,Nvit9,Nvit13 3 Sinv 41 Formicidae Obir11 Obir11 1 Sinv 42 Formicidae 1 Sinv 43 singleton Obir8 1 Sinv 44 singleton 1 Sinv 45 Hymenoptera Obir51 Obir51 3 Sinv 46 singleton 1 Sinv 47 singleton 1 Sinv 48 species Obir41 Obir41 1 Sinv 49 Hymenoptera Obir40 Obir40 3 Sinv 50 singleton Obir24 2 Obir 1 singleton 1 Obir 2 Hymenoptera Sinv7,Amel9 Sinv7,Amel9 3 Obir 3 Hymenoptera Sinv27 Sinv27 3 Obir 4 singleton 1 Obir 5 singleton 1 Obir 6 singleton 1 Obir 7 singleton 1 Obir 8 singleton Sinv43 1 Obir 9 species 0 Obir 10 Formicidae Sinv42 Sinv42 1 Obir 11 Formicidae Sinv41 Sinv41 1 Obir 12 species 0 Obir 13 species Amel26 3 Obir 14 singleton 0 Obir 15 singleton 1 Obir 16 singleton 1 Obir 17 Aculeata Sinv37,Amel21 2 Obir 18 singleton 1 Obir 19 Formicidae Amel3 Sinv32,Sinv36,Amel3,Nvit35 3 Obir 20 species Sinv8 Sinv8 0 Obir 21 singleton 1 Obir 22 singleton Sinv31,Amel5 Sinv31,Amel5 3 Obir 23 singleton Sinv30 Sinv30 1 Obir 24 singleton Amel23 Sinv50,Amel23 2 Obir 25 singleton 1 Obir 26 singleton 1 Obir 27 singleton 1 Obir 28 singleton 1 Obir 29 singleton 1 Obir 30 singleton 1 Obir 31 singleton Sinv33 Sinv33 1 Obir 32 species 0 Obir 33 species 0 Obir 34 species 0 Obir 35 Formicidae 1 Obir 36 species 0 Obir 37 Formicidae Sinv3 Sinv3 1 Obir 38 species 0 Obir 39 singleton Sinv34 Sinv34 1 Obir 40 Hymenoptera Sinv49 Sinv49 3 Obir 41 singleton Sinv48 Sinv48 1 Obir 42 singleton 1 Obir 43 singleton 1 Obir 44 singleton 1 Obir 45 species 0 Obir 46 species 0 Obir 47 Formicidae Sinv38,Amel11 Sinv38,Amel11 2 Obir 48 species 0 Obir 49 singleton 1 Obir 50 singleton 1 Obir 51 Hymenoptera Sinv45 Sinv45 3 Obir 52 Formicidae Sinv28 Sinv28 1 Obir 53 singleton Amel4 Amel4 3 Obir 54 Aculeata Sinv5,Nvit44 Sinv5,Nvit44 3 Obir 55 singleton 1 Obir 56 species 0 Obir 57 Hymenoptera Sinv9,Amel27 Sinv9,Amel27 3 Obir 58 Hymenoptera 3 Obir 59 singleton 1 Obir 60 species 0 Obir 61 singleton 1 Obir 62 species 0 Obir 63 species 0 Obir 64 species 0 Obir 65 singleton 0 Obir 66 singleton 1 Obir 67 species 0 Obir 68 singleton 0 Obir 69 singleton Sinv40 Sinv40 3 Obir 70 Aculeata 2 Obir 71 singleton 1 Obir 72 Hymenoptera Sinv39,Amel2,Nvit49 Sinv39,Amel2,Nvit49 3 Obir 73 singleton 1 Obir 74 singleton 1 Obir 75 singleton 1 Obir 76 singleton 1 Obir 77 singleton Sinv29 Sinv29 1 Obir 78 singleton 1 Obir 79 species 0 Obir 80 Hymenoptera Sinv14 3 Obir 81 species 0 Obir 82 species 0 Obir 83 singleton 0 Obir 84 singleton 0 Obir 85 Aculeata Sinv21,Amel7,Nvit32 Sinv21,Amel7,Nvit32 3 Obir 86 Formicidae Sinv15 1 Obir 87 singleton 1 Obir 88 singleton 1 Obir 89 singleton 1 Obir 90 singleton Sinv10 Sinv10 1 Amel 1 singleton 0 Amel 2 singleton Sinv39,Obir72,Nvit49 Sinv39,Obir72,Nvit49 3 Amel 3 singleton Obir19 Obir19 3 Amel 4 singleton Obir53,Nvit40 Obir53,Nvit40 3 Amel 5 Hymenoptera Sinv31,Obir22 Sinv31,Obir22 3 Amel 6 Hymenoptera Nvit79 Nvit78,Nvit79 3 Amel 7 Aculeata Sinv21,Obir85,Nvit32 Sinv21,Obir85,Nvit32 3 Amel 8 species 0 Amel 9 singleton Sinv7,Obir2 Sinv7,Obir2 3 Amel 10 singleton 0 Amel 11 species Sinv38,Obir47 Sinv38,Obir47 2 Amel 12 species 0 Amel 13 species 0 Amel 14 species 0 Amel 15 species 0 Amel 16 singleton 0 Amel 17 singleton 0 Amel 18 species 0 Amel 19 singleton 0 Amel 20 Hymenoptera 3 Amel 21 species Obir17 Sinv37 2 Amel 22 singleton 0 Amel 23 singleton Obir24 Obir24 2 Amel 24 species 0 Amel 25 singleton 0 Amel 26 Hymenoptera Obir13 Obir13 3 Amel 27 Hymenoptera Sinv9,Obir57 Sinv9,Obir57 3 Amel 28 singleton Sinv23 2 Amel 29 Hymenoptera 3 Amel 30 singleton 0 Nvit 1 singleton 0 Nvit 2 singleton 0 Nvit 3 singleton 0 Nvit 4 species 0 Nvit 5 species 0 Nvit 6 singleton 0 Nvit 7 singleton 0 Nvit 8 singleton 0 Nvit 9 Hymenoptera 3 Nvit 10 singleton 0 Nvit 11 singleton 0 Nvit 12 singleton 0 Nvit 13 singleton 0 Nvit 14 singleton 0 Nvit 15 Hymenoptera 3 Nvit 16 singleton 0 Nvit 17 singleton 0 Nvit 18 singleton 0 Nvit 19 singleton 0 Nvit 20 species 0 Nvit 21 species 0 Nvit 22 singleton 0 Nvit 23 singleton 0 Nvit 24 singleton 0 Nvit 25 singleton 0 Nvit 26 species 0 Nvit 27 species 0 Nvit 28 species 0 Nvit 29 species 0 Nvit 30 species 0 Nvit 31 singleton 0 Nvit 32 species Sinv21,Obir85,Amel7 Sinv21,Obir85,Amel7 3 Nvit 33 singleton 0 Nvit 34 singleton 0 Nvit 35 singleton Obir19,Amel3 Sinv36,Amel3 3 Nvit 36 singleton 0 Nvit 37 singleton 0 Nvit 38 singleton 0 Nvit 39 Hymenoptera 3 Nvit 40 singleton 0 Nvit 41 singleton 0 Nvit 42 singleton 0 Nvit 43 species 0 Nvit 44 Hymenoptera Obir54 Obir54 3 Nvit 45 singleton 0 Nvit 46 singleton 0 Nvit 47 Hymenoptera 3 Nvit 48 species 0 Nvit 49 singleton Sinv39,Obir72,Amel2 Sinv39,Obir72,Amel2 3 Nvit 50 singleton 0 Nvit 51 species 0 Nvit 52 Hymenoptera 3 Nvit 53 species 0 Nvit 54 singleton 0 Nvit 55 singleton 0 Nvit 56 species 0 Nvit 57 species 0 Nvit 58 singleton 0 Nvit 59 singleton 0 Nvit 60 singleton 0 Nvit 61 singleton 0 Nvit 62 singleton 0 Nvit 63 species 0 Nvit 64 Hymenoptera 3 Nvit 65 singleton 0 Nvit 66 singleton 0 Nvit 67 singleton 0 Nvit 68 species 0 Nvit 69 singleton 0 Nvit 70 singleton 0 Nvit 71 species 0 Nvit 72 singleton 0 Nvit 73 species 0 Nvit 74 species 0 Nvit 75 species 0 Nvit 76 singleton 0 Nvit 77 species 0 Nvit 78 singleton Amel6 3 Nvit 79 Hymenoptera Sinv24,Amel6 Amel6 3 Nvit 80 singleton 0 Nvit 81 Hymenoptera 3 Nvit 82 species 0 Nvit 83 singleton 0 Nvit 84 singleton 0 Nvit 85 singleton 0 Nvit 86 species 0 Nvit 87 species 0 Nvit 88 singleton 0 Nvit 89 species 0 Nvit 90 singleton 0 Supplementary Table S2: Synteny and age of genomic loci in four Hymenoptera species. Locus numbers correspond those in Supplementary Table S2.