CODONML (in paml version 4.7, January 2013)  codeml_in
Model: One dN/dS ratio for branches, 
Codon frequency model: F3x4
ns =  19  ls = 213

Codon usage in sequences
--------------------------------------------------------------------------------------------------------------
Phe TTT  2  2  2  2  1  2 | Ser TCT  3  4  4  2  4  3 | Tyr TAT  4  4  3  4  4  4 | Cys TGT  2  1  1  2  1  2
    TTC  1  1  1  1  2  1 |     TCC  3  3  2  3  3  3 |     TAC  5  3  4  5  3  5 |     TGC  1  2  2  1  2  1
Leu TTA  0  1  0  1  0  0 |     TCA  3  2  2  3  2  3 | *** TAA  0  0  0  0  0  0 | *** TGA  0  0  0  0  0  0
    TTG  2  2  3  2  2  2 |     TCG  3  4  3  3  4  3 |     TAG  0  0  0  0  0  0 | Trp TGG  1  2  2  1  2  1
--------------------------------------------------------------------------------------------------------------
Leu CTT  3  2  3  3  2  3 | Pro CCT  4  5  4  4  5  4 | His CAT  3  4  3  3  3  3 | Arg CGT  1  1  0  1  0  1
    CTC  2  2  2  2  2  3 |     CCC  3  3  3  3  3  3 |     CAC  4  4  4  4  4  4 |     CGC  1  1  2  1  1  1
    CTA  1  0  1  0  1  1 |     CCA  3  3  2  3  4  3 | Gln CAA  6  5  4  6  5  6 |     CGA  2  2  1  2  2  2
    CTG  1  1  1  1  1  1 |     CCG  4  4  5  4  3  3 |     CAG  4  3  4  4  4  5 |     CGG  5  4  4  5  5  4
--------------------------------------------------------------------------------------------------------------
Ile ATT  1  1  2  1  1  1 | Thr ACT  3  5  5  3  3  3 | Asn AAT  3  2  3  3  3  3 | Ser AGT  3  3  3  3  3  3
    ATC  2  2  1  3  2  2 |     ACC  4  2  4  4  2  4 |     AAC  1  2  1  1  2  1 |     AGC  1  1  1  1  2  1
    ATA  0  0  0  0  0  0 |     ACA  3  3  2  5  3  3 | Lys AAA  3  3  4  3  2  3 | Arg AGA  4  4  0  3  4  4
Met ATG  2  2  2  2  1  2 |     ACG  5  4  4  4  5  4 |     AAG  5  5  5  6  6  5 |     AGG  2  3  6  3  3  3
--------------------------------------------------------------------------------------------------------------
Val GTT  0  1  1  0  1  0 | Ala GCT  6  7  5  7  7  5 | Asp GAT  6  7  3  6  5  7 | Gly GGT  6  6  6  6  8  6
    GTC  4  2  1  1  4  2 |     GCC  8  8 11  8  7  9 |     GAC  8  9 11  8  7  7 |     GGC  6  5  8  6  7  7
    GTA  0  1  0  0  1  0 |     GCA  6  6  6  6  4  6 | Glu GAA  9 10 12 10 11  8 |     GGA  9 10  9 10 11  9
    GTG  6  6  5  6  5  6 |     GCG  3  2  4  2  4  4 |     GAG  9  9  8  8 10  9 |     GGG  8  7  8  8  4  9
--------------------------------------------------------------------------------------------------------------

--------------------------------------------------------------------------------------------------------------
Phe TTT  2  2  2  1  2  2 | Ser TCT  3  3  3  5  3  3 | Tyr TAT  3  3  4  4  3  4 | Cys TGT  2  2  2  1  2  2
    TTC  1  1  1  1  1  1 |     TCC  3  3  3  2  3  3 |     TAC  6  6  5  3  6  5 |     TGC  1  1  1  2  1  1
Leu TTA  0  0  0  0  0  0 |     TCA  3  3  3  2  3  3 | *** TAA  0  0  0  0  0  0 | *** TGA  0  0  0  0  0  0
    TTG  2  2  2  1  2  2 |     TCG  3  3  3  5  3  3 |     TAG  0  0  0  0  0  0 | Trp TGG  1  1  1  2  1  1
--------------------------------------------------------------------------------------------------------------
Leu CTT  3  3  3  2  3  3 | Pro CCT  4  4  4  4  4  4 | His CAT  3  3  3  4  3  3 | Arg CGT  1  1  1  0  1  1
    CTC  3  3  2  2  3  2 |     CCC  3  3  3  3  3  3 |     CAC  4  4  4  4  4  4 |     CGC  1  1  1  1  1  1
    CTA  1  1  1  1  1  1 |     CCA  3  3  3  4  3  3 | Gln CAA  6  6  5  4  6  6 |     CGA  2  2  2  3  2  2
    CTG  1  1  1  0  1  1 |     CCG  3  3  4  4  3  4 |     CAG  5  5  4  6  5  4 |     CGG  4  4  6  4  4  5
--------------------------------------------------------------------------------------------------------------
Ile ATT  1  1  1  1  1  1 | Thr ACT  2  3  3  3  3  3 | Asn AAT  3  3  3  3  3  3 | Ser AGT  3  3  3  3  3  3
    ATC  2  2  2  2  2  2 |     ACC  5  4  4  4  4  4 |     AAC  1  1  1  2  1  1 |     AGC  1  1  1  1  1  1
    ATA  0  0  0  0  0  0 |     ACA  3  3  3  3  3  3 | Lys AAA  3  3  3  5  3  3 | Arg AGA  4  4  4  4  4  4
Met ATG  2  2  2  2  2  2 |     ACG  4  4  4  4  4  5 |     AAG  5  5  5  5  5  5 |     AGG  3  3  3  2  3  2
--------------------------------------------------------------------------------------------------------------
Val GTT  0  0  0  0  0  0 | Ala GCT  5  5  6  6  5  6 | Asp GAT  7  7  6  8  7  6 | Gly GGT  6  6  6  6  5  6
    GTC  2  2  2  3  2  4 |     GCC  9  9  9  7  9  8 |     GAC  7  7  8  7  7  8 |     GGC  7  7  7  9  8  6
    GTA  0  0  1  3  0  0 |     GCA  6  6  6  4  6  6 | Glu GAA  8  8  9  7  8  9 |     GGA  9  9  9  9  9  9
    GTG  6  6  5  5  6  6 |     GCG  4  4  3  5  4  3 |     GAG  9  9  9  8  9  9 |     GGG  9  9  8  7  9  8
--------------------------------------------------------------------------------------------------------------

--------------------------------------------------------------------------------------------------------------
Phe TTT  2  2  2  2  3  2 | Ser TCT  3  3  3  5  3  4 | Tyr TAT  3  4  3  4  4  5 | Cys TGT  2  2  2  1  2  2
    TTC  1  1  1  1  1  0 |     TCC  3  3  3  3  3  3 |     TAC  6  5  6  4  5  2 |     TGC  1  1  1  2  1  2
Leu TTA  0  0  0  0  0  0 |     TCA  3  3  3  2  3  2 | *** TAA  0  0  0  0  0  0 | *** TGA  0  0  0  0  0  0
    TTG  2  2  2  2  2  2 |     TCG  3  3  3  3  3  4 |     TAG  0  0  0  0  0  0 | Trp TGG  1  1  1  3  1  2
--------------------------------------------------------------------------------------------------------------
Leu CTT  3  3  3  2  2  3 | Pro CCT  4  4  4  4  4  6 | His CAT  3  3  3  6  3  3 | Arg CGT  1  1  1  1  1  0
    CTC  3  2  3  2  2  2 |     CCC  3  3  3  2  3  1 |     CAC  4  4  4  4  4  4 |     CGC  1  1  1  1  1  1
    CTA  1  1  1  1  1  1 |     CCA  3  3  3  4  3  3 | Gln CAA  6  6  6  5  6  3 |     CGA  2  2  2  2  2  2
    CTG  1  1  1  1  1  2 |     CCG  3  4  3  5  4  4 |     CAG  5  4  5  3  4  5 |     CGG  4  5  4  3  5  3
--------------------------------------------------------------------------------------------------------------
Ile ATT  1  1  1  2  1  1 | Thr ACT  3  3  3  4  3  4 | Asn AAT  3  3  3  2  3  3 | Ser AGT  3  3  3  3  3  2
    ATC  2  2  2  1  2  2 |     ACC  4  4  4  3  4  3 |     AAC  1  1  1  1  1  2 |     AGC  1  1  1  1  1  1
    ATA  0  0  0  0  0  0 |     ACA  3  3  3  3  3  2 | Lys AAA  3  3  3  3  3  3 | Arg AGA  4  4  4  4  4  2
Met ATG  2  2  2  2  2  2 |     ACG  4  4  4  4  4  5 |     AAG  5  5  5  4  5  5 |     AGG  3  3  3  3  3  4
--------------------------------------------------------------------------------------------------------------
Val GTT  0  0  0  0  0  1 | Ala GCT  4  6  5  6  8  5 | Asp GAT  7  6  7  7  7  7 | Gly GGT  6  6  6  7  5  7
    GTC  2  2  2  2  3  2 |     GCC  9  9  9  8  7 10 |     GAC  7  8  7  9  7 11 |     GGC  7  7  7  5  7  7
    GTA  0  0  0  1  0  1 |     GCA  6  6  6  4  6  5 | Glu GAA  8  9  8  8  9 11 |     GGA  9  9  9 10  8 10
    GTG  6  6  6  6  6  3 |     GCG  5  3  4  4  3  4 |     GAG  9  9  9 11  9  9 |     GGG  9  8  9  7  9  6
--------------------------------------------------------------------------------------------------------------

--------------------------------------------------
Phe TTT  1 | Ser TCT  5 | Tyr TAT  4 | Cys TGT  1
    TTC  2 |     TCC  1 |     TAC  2 |     TGC  2
Leu TTA  0 |     TCA  3 | *** TAA  0 | *** TGA  0
    TTG  2 |     TCG  2 |     TAG  0 | Trp TGG  2
--------------------------------------------------
Leu CTT  3 | Pro CCT  5 | His CAT  3 | Arg CGT  1
    CTC  2 |     CCC  3 |     CAC  5 |     CGC  1
    CTA  1 |     CCA  3 | Gln CAA  4 |     CGA  2
    CTG  1 |     CCG  6 |     CAG  6 |     CGG  4
--------------------------------------------------
Ile ATT  1 | Thr ACT  4 | Asn AAT  3 | Ser AGT  3
    ATC  2 |     ACC  3 |     AAC  2 |     AGC  2
    ATA  0 |     ACA  2 | Lys AAA  4 | Arg AGA  4
Met ATG  2 |     ACG  6 |     AAG  4 |     AGG  2
--------------------------------------------------
Val GTT  0 | Ala GCT  5 | Asp GAT  9 | Gly GGT  8
    GTC  2 |     GCC  9 |     GAC  7 |     GGC  4
    GTA  2 |     GCA  4 | Glu GAA  8 |     GGA  9
    GTG  6 |     GCG  4 |     GAG  7 |     GGG  8
--------------------------------------------------

Codon position x base (3x4) table for each sequence.

#1: Homo_sapiens   
position  1:    T:0.14085    C:0.22066    A:0.19718    G:0.44131
position  2:    T:0.12676    C:0.30047    A:0.32864    G:0.24413
position  3:    T:0.23474    C:0.25352    A:0.23005    G:0.28169
Average         T:0.16745    C:0.25822    A:0.25196    G:0.32238

#2: Microcebus_murinus
position  1:    T:0.14554    C:0.20657    A:0.19718    G:0.45070
position  2:    T:0.12207    C:0.30516    A:0.32864    G:0.24413
position  3:    T:0.25822    C:0.23474    A:0.23474    G:0.27230
Average         T:0.17527    C:0.24883    A:0.25352    G:0.32238

#3: Elephantulus_edwardii
position  1:    T:0.13615    C:0.20188    A:0.20188    G:0.46009
position  2:    T:0.11737    C:0.30986    A:0.32394    G:0.24883
position  3:    T:0.22535    C:0.27230    A:0.20188    G:0.30047
Average         T:0.15962    C:0.26135    A:0.24257    G:0.33646

#4: Callithrix_jacchus
position  1:    T:0.14085    C:0.21596    A:0.21127    G:0.43192
position  2:    T:0.11737    C:0.30047    A:0.33333    G:0.24883
position  3:    T:0.23474    C:0.24413    A:0.24413    G:0.27700
Average         T:0.16432    C:0.25352    A:0.26291    G:0.31925

#5: Oryctolagus_cuniculus
position  1:    T:0.14085    C:0.21127    A:0.19718    G:0.45070
position  2:    T:0.12207    C:0.29577    A:0.32394    G:0.25822
position  3:    T:0.23944    C:0.24883    A:0.23474    G:0.27700
Average         T:0.16745    C:0.25196    A:0.25196    G:0.32864

#6: Chlorocebus_sabaeus
position  1:    T:0.14085    C:0.22066    A:0.19718    G:0.44131
position  2:    T:0.12207    C:0.29577    A:0.32864    G:0.25352
position  3:    T:0.23474    C:0.25352    A:0.22535    G:0.28638
Average         T:0.16588    C:0.25665    A:0.25039    G:0.32707

#7: Papio_anubis   
position  1:    T:0.14085    C:0.22066    A:0.19718    G:0.44131
position  2:    T:0.12207    C:0.29577    A:0.32864    G:0.25352
position  3:    T:0.22535    C:0.26291    A:0.22535    G:0.28638
Average         T:0.16275    C:0.25978    A:0.25039    G:0.32707

#8: Cercocebus_atys
position  1:    T:0.14085    C:0.22066    A:0.19718    G:0.44131
position  2:    T:0.12207    C:0.29577    A:0.32864    G:0.25352
position  3:    T:0.23005    C:0.25822    A:0.22535    G:0.28638
Average         T:0.16432    C:0.25822    A:0.25039    G:0.32707

#9: Pan_troglodytes
position  1:    T:0.14085    C:0.22066    A:0.19718    G:0.44131
position  2:    T:0.11737    C:0.30047    A:0.32394    G:0.25822
position  3:    T:0.23474    C:0.25352    A:0.23005    G:0.28169
Average         T:0.16432    C:0.25822    A:0.25039    G:0.32707

#10: Pteropus_vampyrus
position  1:    T:0.13615    C:0.21596    A:0.20657    G:0.44131
position  2:    T:0.11268    C:0.30516    A:0.32864    G:0.25352
position  3:    T:0.23944    C:0.24883    A:0.23005    G:0.28169
Average         T:0.16275    C:0.25665    A:0.25509    G:0.32551

#11: Macaca_nemestrina
position  1:    T:0.14085    C:0.22066    A:0.19718    G:0.44131
position  2:    T:0.12207    C:0.29577    A:0.32864    G:0.25352
position  3:    T:0.22535    C:0.26291    A:0.22535    G:0.28638
Average         T:0.16275    C:0.25978    A:0.25039    G:0.32707

#12: Homo_sapiens   
position  1:    T:0.14085    C:0.22066    A:0.19718    G:0.44131
position  2:    T:0.12676    C:0.30047    A:0.32864    G:0.24413
position  3:    T:0.23474    C:0.25352    A:0.23005    G:0.28169
Average         T:0.16745    C:0.25822    A:0.25196    G:0.32238

#13: Macaca_fascicularis
position  1:    T:0.14085    C:0.22066    A:0.19718    G:0.44131
position  2:    T:0.12207    C:0.29577    A:0.32864    G:0.25352
position  3:    T:0.22535    C:0.25822    A:0.22535    G:0.29108
Average         T:0.16275    C:0.25822    A:0.25039    G:0.32864

#14: Gorilla_gorilla_gorilla
position  1:    T:0.14085    C:0.22066    A:0.19718    G:0.44131
position  2:    T:0.11737    C:0.30047    A:0.32864    G:0.25352
position  3:    T:0.23474    C:0.25352    A:0.23005    G:0.28169
Average         T:0.16432    C:0.25822    A:0.25196    G:0.32551

#15: Macaca_mulatta 
position  1:    T:0.14085    C:0.22066    A:0.19718    G:0.44131
position  2:    T:0.12207    C:0.29577    A:0.32864    G:0.25352
position  3:    T:0.23005    C:0.25822    A:0.22535    G:0.28638
Average         T:0.16432    C:0.25822    A:0.25039    G:0.32707

#16: Otolemur_garnettii
position  1:    T:0.15023    C:0.21596    A:0.18779    G:0.44601
position  2:    T:0.11737    C:0.30047    A:0.33333    G:0.24883
position  3:    T:0.26291    C:0.23005    A:0.22066    G:0.28638
Average         T:0.17684    C:0.24883    A:0.24726    G:0.32707

#17: Nomascus_leucogenys
position  1:    T:0.14554    C:0.21596    A:0.19718    G:0.44131
position  2:    T:0.12207    C:0.30047    A:0.32864    G:0.24883
position  3:    T:0.24413    C:0.24413    A:0.22535    G:0.28638
Average         T:0.17058    C:0.25352    A:0.25039    G:0.32551

#18: Chrysochloris_asiatica
position  1:    T:0.14085    C:0.20188    A:0.19249    G:0.46479
position  2:    T:0.11268    C:0.30516    A:0.34272    G:0.23944
position  3:    T:0.25822    C:0.24883    A:0.21127    G:0.28169
Average         T:0.17058    C:0.25196    A:0.24883    G:0.32864

#19: Condylura_cristata
position  1:    T:0.12676    C:0.23474    A:0.20657    G:0.43192
position  2:    T:0.12676    C:0.30516    A:0.31925    G:0.24883
position  3:    T:0.26291    C:0.23005    A:0.21596    G:0.29108
Average         T:0.17214    C:0.25665    A:0.24726    G:0.32394

Sums of codon usage counts
------------------------------------------------------------------------------
Phe F TTT      36 | Ser S TCT      66 | Tyr Y TAT      71 | Cys C TGT      32
      TTC      20 |       TCC      53 |       TAC      86 |       TGC      26
Leu L TTA       2 |       TCA      51 | *** * TAA       0 | *** * TGA       0
      TTG      38 |       TCG      61 |       TAG       0 | Trp W TGG      27
------------------------------------------------------------------------------
Leu L CTT      52 | Pro P CCT      81 | His H CAT      62 | Arg R CGT      15
      CTC      44 |       CCC      54 |       CAC      77 |       CGC      20
      CTA      17 |       CCA      59 | Gln Q CAA     101 |       CGA      38
      CTG      19 |       CCG      73 |       CAG      85 |       CGG      82
------------------------------------------------------------------------------
Ile I ATT      21 | Thr T ACT      63 | Asn N AAT      55 | Ser S AGT      56
      ATC      37 |       ACC      70 |       AAC      24 |       AGC      21
      ATA       0 |       ACA      56 | Lys K AAA      60 | Arg R AGA      69
Met M ATG      37 |       ACG      82 |       AAG      95 |       AGG      57
------------------------------------------------------------------------------
Val V GTT       4 | Ala A GCT     109 | Asp D GAT     125 | Gly G GGT     118
      GTC      44 |       GCC     163 |       GAC     150 |       GGC     127
      GTA      10 |       GCA     105 | Glu E GAA     170 |       GGA     176
      GTG     107 |       GCG      69 |       GAG     169 |       GGG     150
------------------------------------------------------------------------------


Codon position x base (3x4) table, overall

position  1:    T:0.14060    C:0.21720    A:0.19842    G:0.44379
position  2:    T:0.12058    C:0.30022    A:0.32864    G:0.25056
position  3:    T:0.23870    C:0.25105    A:0.22585    G:0.28441
Average         T:0.16663    C:0.25616    A:0.25097    G:0.32625


Nei & Gojobori 1986. dN/dS (dN, dS)
(Note: This matrix is not used in later ML. analysis.
Use runmode = -2 for ML pairwise comparison.)

Homo_sapiens        
Microcebus_murinus   0.2565 (0.0365 0.1423)
Elephantulus_edwardii 0.1761 (0.0460 0.2609) 0.1649 (0.0453 0.2745)
Callithrix_jacchus   0.5464 (0.0360 0.0659) 0.3442 (0.0605 0.1757) 0.2065 (0.0679 0.3289)
Oryctolagus_cuniculus 0.3723 (0.0662 0.1779) 0.3192 (0.0536 0.1678) 0.2444 (0.0672 0.2751) 0.3975 (0.0912 0.2293)
Chlorocebus_sabaeus  0.9113 (0.0170 0.0186) 0.2338 (0.0387 0.1655) 0.1670 (0.0481 0.2883) 0.4668 (0.0404 0.0865) 0.3528 (0.0685 0.1941)
Papio_anubis         0.5422 (0.0170 0.0313) 0.2137 (0.0387 0.1811) 0.1570 (0.0481 0.3067) 0.4019 (0.0404 0.1005) 0.3258 (0.0685 0.2102)-1.0000 (0.0000 0.0124)
Cercocebus_atys      0.6806 (0.0170 0.0250) 0.2233 (0.0387 0.1732) 0.1619 (0.0481 0.2975) 0.4321 (0.0404 0.0935) 0.3388 (0.0685 0.2021)-1.0000 (0.0000 0.0062)-1.0000 (0.0000 0.0062)
Pan_troglodytes      0.6862 (0.0085 0.0123) 0.2263 (0.0321 0.1420) 0.1474 (0.0371 0.2517) 0.3989 (0.0316 0.0793) 0.3475 (0.0617 0.1775) 0.4065 (0.0127 0.0313) 0.2879 (0.0127 0.0442) 0.3373 (0.0127 0.0377)
Pteropus_vampyrus    0.3021 (0.0590 0.1952) 0.2518 (0.0476 0.1889) 0.2666 (0.0668 0.2506) 0.3374 (0.0837 0.2480) 0.3646 (0.0746 0.2047) 0.2679 (0.0589 0.2200) 0.2490 (0.0589 0.2367) 0.2581 (0.0589 0.2283) 0.2684 (0.0533 0.1988)
Macaca_nemestrina    0.5422 (0.0170 0.0313) 0.2137 (0.0387 0.1811) 0.1570 (0.0481 0.3067) 0.4019 (0.0404 0.1005) 0.3258 (0.0685 0.2102)-1.0000 (0.0000 0.0124)-1.0000 (0.0000 0.0124)-1.0000 (0.0000 0.0062) 0.2879 (0.0127 0.0442) 0.2490 (0.0589 0.2367)
Homo_sapiens        -1.0000 (0.0000 0.0000) 0.2565 (0.0365 0.1423) 0.1761 (0.0460 0.2609) 0.5464 (0.0360 0.0659) 0.3723 (0.0662 0.1779) 0.9113 (0.0170 0.0186) 0.5422 (0.0170 0.0313) 0.6806 (0.0170 0.0250) 0.6862 (0.0085 0.0123) 0.3021 (0.0590 0.1952) 0.5422 (0.0170 0.0313)
Macaca_fascicularis  0.5422 (0.0170 0.0313) 0.2137 (0.0387 0.1811) 0.1570 (0.0481 0.3067) 0.4019 (0.0404 0.1005) 0.3258 (0.0685 0.2102)-1.0000 (0.0000 0.0124)-1.0000 (0.0000 0.0124)-1.0000 (0.0000 0.0062) 0.2879 (0.0127 0.0442) 0.2490 (0.0589 0.2367)-1.0000 (0.0000 0.0124) 0.5422 (0.0170 0.0313)
Gorilla_gorilla_gorilla-1.0000 (0.0063 0.0000) 0.2100 (0.0299 0.1425) 0.1503 (0.0393 0.2612) 0.4459 (0.0294 0.0660) 0.3332 (0.0594 0.1781) 0.5663 (0.0106 0.0187) 0.3369 (0.0106 0.0314) 0.4230 (0.0106 0.0250) 0.1706 (0.0021 0.0123) 0.2669 (0.0522 0.1954) 0.3369 (0.0106 0.0314)-1.0000 (0.0063 0.0000) 0.3369 (0.0106 0.0314)
Macaca_mulatta       0.6806 (0.0170 0.0250) 0.2233 (0.0387 0.1732) 0.1619 (0.0481 0.2975) 0.4321 (0.0404 0.0935) 0.3388 (0.0685 0.2021)-1.0000 (0.0000 0.0062)-1.0000 (0.0000 0.0062)-1.0000 (0.0000 0.0000) 0.3373 (0.0127 0.0377) 0.2581 (0.0589 0.2283)-1.0000 (0.0000 0.0062) 0.6806 (0.0170 0.0250)-1.0000 (0.0000 0.0062) 0.4230 (0.0106 0.0250)
Otolemur_garnettii   0.3135 (0.0520 0.1659) 0.3194 (0.0320 0.1001) 0.2050 (0.0575 0.2804) 0.3660 (0.0764 0.2087) 0.3659 (0.0763 0.2085) 0.2854 (0.0542 0.1899) 0.2630 (0.0542 0.2061) 0.2738 (0.0542 0.1980) 0.2873 (0.0476 0.1655) 0.2842 (0.0633 0.2226) 0.2854 (0.0542 0.1899) 0.3135 (0.0520 0.1659) 0.2630 (0.0542 0.2061) 0.2727 (0.0453 0.1661) 0.2738 (0.0542 0.1980)
Nomascus_leucogenys  0.7948 (0.0148 0.0187) 0.2333 (0.0387 0.1657) 0.1654 (0.0470 0.2843) 0.4404 (0.0382 0.0866) 0.3382 (0.0684 0.2024) 0.7632 (0.0191 0.0251) 0.5045 (0.0191 0.0379) 0.6080 (0.0191 0.0315) 0.3377 (0.0106 0.0313) 0.2776 (0.0612 0.2203) 0.5045 (0.0191 0.0379) 0.7948 (0.0148 0.0187) 0.5045 (0.0191 0.0379) 0.4516 (0.0084 0.0187) 0.6080 (0.0191 0.0315) 0.2848 (0.0542 0.1902)
Chrysochloris_asiatica 0.2004 (0.0448 0.2235) 0.1868 (0.0441 0.2361) 0.1626 (0.0397 0.2442) 0.2638 (0.0724 0.2745) 0.3089 (0.0706 0.2286) 0.2062 (0.0514 0.2495) 0.1927 (0.0514 0.2670) 0.1993 (0.0514 0.2582) 0.1924 (0.0437 0.2271) 0.2852 (0.0645 0.2260) 0.1927 (0.0514 0.2670) 0.2004 (0.0448 0.2235) 0.1927 (0.0514 0.2670) 0.1902 (0.0425 0.2237) 0.1993 (0.0514 0.2582) 0.2153 (0.0529 0.2460) 0.2058 (0.0514 0.2499)
Condylura_cristata   0.4194 (0.0658 0.1568) 0.3542 (0.0588 0.1659) 0.2749 (0.0679 0.2471) 0.4529 (0.0918 0.2028) 0.4996 (0.0835 0.1671) 0.3771 (0.0680 0.1804) 0.3466 (0.0680 0.1962) 0.3613 (0.0680 0.1882) 0.3913 (0.0612 0.1565) 0.4981 (0.0634 0.1273) 0.3466 (0.0680 0.1962) 0.4194 (0.0658 0.1568) 0.3466 (0.0680 0.1962) 0.3751 (0.0589 0.1570) 0.3613 (0.0680 0.1882) 0.3320 (0.0632 0.1904) 0.3763 (0.0680 0.1806) 0.3712 (0.0690 0.1858)

pairwise comparison, codon frequencies: F3x4.


2 (Microcebus_murinus) ... 1 (Homo_sapiens)
lnL =-1011.869460
  0.19368  3.27441  0.36150

t= 0.1937  S=   207.4  N=   431.6  dN/dS=  0.3615  dN = 0.0410  dS = 0.1135


3 (Elephantulus_edwardii) ... 1 (Homo_sapiens)
lnL =-1071.245715
  0.30791  2.44934  0.23245

t= 0.3079  S=   199.4  N=   439.6  dN/dS=  0.2325  dN = 0.0505  dS = 0.2175


3 (Elephantulus_edwardii) ... 2 (Microcebus_murinus)
lnL =-1066.681275
  0.32089  3.22240  0.22868

t= 0.3209  S=   207.5  N=   431.5  dN/dS=  0.2287  dN = 0.0510  dS = 0.2232


4 (Callithrix_jacchus) ... 1 (Homo_sapiens)
lnL = -990.633606
  0.13308  1.05444  0.64794

t= 0.1331  S=   178.2  N=   460.8  dN/dS=  0.6479  dN = 0.0385  dS = 0.0595


4 (Callithrix_jacchus) ... 2 (Microcebus_murinus)
lnL =-1075.828649
  0.27457  1.77218  0.43581

t= 0.2746  S=   191.8  N=   447.2  dN/dS=  0.4358  dN = 0.0659  dS = 0.1512


4 (Callithrix_jacchus) ... 3 (Elephantulus_edwardii)
lnL =-1131.867524
  0.40955  1.96293  0.26548

t= 0.4095  S=   193.9  N=   445.1  dN/dS=  0.2655  dN = 0.0742  dS = 0.2795


5 (Oryctolagus_cuniculus) ... 1 (Homo_sapiens)
lnL =-1075.295013
  0.29144  3.34211  0.51250

t= 0.2914  S=   207.6  N=   431.4  dN/dS=  0.5125  dN = 0.0742  dS = 0.1448


5 (Oryctolagus_cuniculus) ... 2 (Microcebus_murinus)
lnL =-1049.531247
  0.25525  3.36143  0.42653

t= 0.2552  S=   208.8  N=   430.2  dN/dS=  0.4265  dN = 0.0591  dS = 0.1386


5 (Oryctolagus_cuniculus) ... 3 (Elephantulus_edwardii)
lnL =-1107.273889
  0.37619  2.74629  0.30850

t= 0.3762  S=   203.3  N=   435.7  dN/dS=  0.3085  dN = 0.0732  dS = 0.2373


5 (Oryctolagus_cuniculus) ... 4 (Callithrix_jacchus)
lnL =-1140.633200
  0.38887  2.22093  0.51875

t= 0.3889  S=   197.4  N=   441.6  dN/dS=  0.5187  dN = 0.1008  dS = 0.1942


6 (Chlorocebus_sabaeus) ... 1 (Homo_sapiens)
lnL = -910.070591
  0.05282  3.57146  1.28988

t= 0.0528  S=   207.9  N=   431.1  dN/dS=  1.2899  dN = 0.0190  dS = 0.0147


6 (Chlorocebus_sabaeus) ... 2 (Microcebus_murinus)
lnL =-1020.179016
  0.21706  4.89070  0.35005

t= 0.2171  S=   215.9  N=   423.1  dN/dS=  0.3501  dN = 0.0445  dS = 0.1270


6 (Chlorocebus_sabaeus) ... 3 (Elephantulus_edwardii)
lnL =-1078.804875
  0.33565  3.25888  0.22985

t= 0.3357  S=   205.7  N=   433.3  dN/dS=  0.2299  dN = 0.0538  dS = 0.2342


6 (Chlorocebus_sabaeus) ... 4 (Callithrix_jacchus)
lnL =-1007.817510
  0.15858  1.57408  0.59166

t= 0.1586  S=   187.6  N=   451.4  dN/dS=  0.5917  dN = 0.0440  dS = 0.0743


6 (Chlorocebus_sabaeus) ... 5 (Oryctolagus_cuniculus)
lnL =-1080.964125
  0.31019  4.29467  0.50502

t= 0.3102  S=   212.8  N=   426.2  dN/dS=  0.5050  dN = 0.0780  dS = 0.1544


7 (Papio_anubis) ... 1 (Homo_sapiens)
lnL = -919.358703
  0.06262  4.28024  0.78829

t= 0.0626  S=   211.7  N=   427.3  dN/dS=  0.7883  dN = 0.0192  dS = 0.0243


7 (Papio_anubis) ... 2 (Microcebus_murinus)
lnL =-1025.591278
  0.22958  5.17848  0.32186

t= 0.2296  S=   217.1  N=   421.9  dN/dS=  0.3219  dN = 0.0446  dS = 0.1386


7 (Papio_anubis) ... 3 (Elephantulus_edwardii)
lnL =-1083.174016
  0.35103  3.43684  0.21659

t= 0.3510  S=   206.5  N=   432.5  dN/dS=  0.2166  dN = 0.0539  dS = 0.2491


7 (Papio_anubis) ... 4 (Callithrix_jacchus)
lnL =-1015.052358
  0.16922  1.75531  0.51515

t= 0.1692  S=   190.2  N=   448.8  dN/dS=  0.5151  dN = 0.0441  dS = 0.0855


7 (Papio_anubis) ... 5 (Oryctolagus_cuniculus)
lnL =-1086.010243
  0.32340  4.48528  0.46731

t= 0.3234  S=   213.5  N=   425.5  dN/dS=  0.4673  dN = 0.0781  dS = 0.1671


7 (Papio_anubis) ... 6 (Chlorocebus_sabaeus)
lnL = -858.060796
  0.00953 999.00000  0.00100

t= 0.0095  S=   242.2  N=   396.8  dN/dS=  0.0010  dN = 0.0000  dS = 0.0084


8 (Cercocebus_atys) ... 1 (Homo_sapiens)
lnL = -914.977605
  0.05770  3.92949  0.97747

t= 0.0577  S=   210.0  N=   429.0  dN/dS=  0.9775  dN = 0.0191  dS = 0.0195


8 (Cercocebus_atys) ... 2 (Microcebus_murinus)
lnL =-1023.031397
  0.22327  5.03575  0.33548

t= 0.2233  S=   216.5  N=   422.5  dN/dS=  0.3355  dN = 0.0445  dS = 0.1327


8 (Cercocebus_atys) ... 3 (Elephantulus_edwardii)
lnL =-1081.163187
  0.34325  3.34990  0.22316

t= 0.3432  S=   206.1  N=   432.9  dN/dS=  0.2232  dN = 0.0539  dS = 0.2415


8 (Cercocebus_atys) ... 4 (Callithrix_jacchus)
lnL =-1011.627330
  0.16384  1.66696  0.55109

t= 0.1638  S=   189.0  N=   450.0  dN/dS=  0.5511  dN = 0.0440  dS = 0.0799


8 (Cercocebus_atys) ... 5 (Oryctolagus_cuniculus)
lnL =-1083.634337
  0.31674  4.39114  0.48563

t= 0.3167  S=   213.2  N=   425.8  dN/dS=  0.4856  dN = 0.0780  dS = 0.1606


8 (Cercocebus_atys) ... 6 (Chlorocebus_sabaeus)
lnL = -852.765432
  0.00474 999.00000  0.00100

t= 0.0047  S=   242.4  N=   396.6  dN/dS=  0.0010  dN = 0.0000  dS = 0.0042


8 (Cercocebus_atys) ... 7 (Papio_anubis)
lnL = -852.418851
  0.00474 999.00000  0.00100

t= 0.0047  S=   242.1  N=   396.9  dN/dS=  0.0010  dN = 0.0000  dS = 0.0042


9 (Pan_troglodytes) ... 1 (Homo_sapiens)
lnL = -885.417715
  0.02861  3.90896  0.98310

t= 0.0286  S=   210.9  N=   428.1  dN/dS=  0.9831  dN = 0.0095  dS = 0.0096


9 (Pan_troglodytes) ... 2 (Microcebus_murinus)
lnL =-1001.620656
  0.18364  3.83139  0.32650

t= 0.1836  S=   211.7  N=   427.3  dN/dS=  0.3265  dN = 0.0364  dS = 0.1114


9 (Pan_troglodytes) ... 3 (Elephantulus_edwardii)
lnL =-1053.115915
  0.28046  2.37955  0.19339

t= 0.2805  S=   199.6  N=   439.4  dN/dS=  0.1934  dN = 0.0406  dS = 0.2099


9 (Pan_troglodytes) ... 4 (Callithrix_jacchus)
lnL = -988.747629
  0.13314  1.38321  0.49117

t= 0.1331  S=   185.7  N=   453.3  dN/dS=  0.4912  dN = 0.0341  dS = 0.0694


9 (Pan_troglodytes) ... 5 (Oryctolagus_cuniculus)
lnL =-1066.292013
  0.28088  3.69249  0.48330

t= 0.2809  S=   210.5  N=   428.5  dN/dS=  0.4833  dN = 0.0692  dS = 0.1433


9 (Pan_troglodytes) ... 6 (Chlorocebus_sabaeus)
lnL = -906.372525
  0.05280  8.26832  0.64281

t= 0.0528  S=   224.5  N=   414.5  dN/dS=  0.6428  dN = 0.0147  dS = 0.0229


9 (Pan_troglodytes) ... 7 (Papio_anubis)
lnL = -914.592312
  0.06283  9.60303  0.46042

t= 0.0628  S=   226.4  N=   412.6  dN/dS=  0.4604  dN = 0.0148  dS = 0.0321


9 (Pan_troglodytes) ... 8 (Cercocebus_atys)
lnL = -910.700882
  0.05778  8.93636  0.53678

t= 0.0578  S=   225.6  N=   413.4  dN/dS=  0.5368  dN = 0.0148  dS = 0.0275


10 (Pteropus_vampyrus) ... 1 (Homo_sapiens)
lnL =-1077.078528
  0.28792  1.91150  0.36596

t= 0.2879  S=   193.8  N=   445.2  dN/dS=  0.3660  dN = 0.0629  dS = 0.1719


10 (Pteropus_vampyrus) ... 2 (Microcebus_murinus)
lnL =-1052.927688
  0.25780  1.85705  0.29858

t= 0.2578  S=   194.2  N=   444.8  dN/dS=  0.2986  dN = 0.0501  dS = 0.1679


10 (Pteropus_vampyrus) ... 3 (Elephantulus_edwardii)
lnL =-1103.238702
  0.35231  1.95219  0.31923

t= 0.3523  S=   194.8  N=   444.2  dN/dS=  0.3192  dN = 0.0712  dS = 0.2229


10 (Pteropus_vampyrus) ... 4 (Callithrix_jacchus)
lnL =-1140.450048
  0.38633  1.43427  0.39463

t= 0.3863  S=   186.3  N=   452.7  dN/dS=  0.3946  dN = 0.0890  dS = 0.2255


10 (Pteropus_vampyrus) ... 5 (Oryctolagus_cuniculus)
lnL =-1104.492288
  0.33605  2.28741  0.43340

t= 0.3360  S=   199.2  N=   439.8  dN/dS=  0.4334  dN = 0.0796  dS = 0.1836


10 (Pteropus_vampyrus) ... 6 (Chlorocebus_sabaeus)
lnL =-1083.412456
  0.30719  2.45370  0.34051

t= 0.3072  S=   199.7  N=   439.3  dN/dS=  0.3405  dN = 0.0638  dS = 0.1873


10 (Pteropus_vampyrus) ... 7 (Papio_anubis)
lnL =-1088.471974
  0.32049  2.59322  0.31918

t= 0.3205  S=   200.8  N=   438.2  dN/dS=  0.3192  dN = 0.0640  dS = 0.2004


10 (Pteropus_vampyrus) ... 8 (Cercocebus_atys)
lnL =-1086.118608
  0.31376  2.52567  0.32970

t= 0.3138  S=   200.3  N=   438.7  dN/dS=  0.3297  dN = 0.0639  dS = 0.1937


10 (Pteropus_vampyrus) ... 9 (Pan_troglodytes)
lnL =-1068.194935
  0.27792  2.03967  0.32385

t= 0.2779  S=   196.3  N=   442.7  dN/dS=  0.3238  dN = 0.0564  dS = 0.1743


11 (Macaca_nemestrina) ... 1 (Homo_sapiens)
lnL = -918.733189
  0.06262  4.27841  0.78803

t= 0.0626  S=   211.7  N=   427.3  dN/dS=  0.7880  dN = 0.0192  dS = 0.0243


11 (Macaca_nemestrina) ... 2 (Microcebus_murinus)
lnL =-1024.965775
  0.22953  5.17384  0.32191

t= 0.2295  S=   217.1  N=   421.9  dN/dS=  0.3219  dN = 0.0446  dS = 0.1385


11 (Macaca_nemestrina) ... 3 (Elephantulus_edwardii)
lnL =-1082.542902
  0.35093  3.43090  0.21659

t= 0.3509  S=   206.5  N=   432.5  dN/dS=  0.2166  dN = 0.0539  dS = 0.2490


11 (Macaca_nemestrina) ... 4 (Callithrix_jacchus)
lnL =-1014.455451
  0.16926  1.75202  0.51462

t= 0.1693  S=   190.1  N=   448.9  dN/dS=  0.5146  dN = 0.0441  dS = 0.0856


11 (Macaca_nemestrina) ... 5 (Oryctolagus_cuniculus)
lnL =-1085.340152
  0.32334  4.48108  0.46734

t= 0.3233  S=   213.5  N=   425.5  dN/dS=  0.4673  dN = 0.0781  dS = 0.1670


11 (Macaca_nemestrina) ... 6 (Chlorocebus_sabaeus)
lnL = -857.409015
  0.00953 999.00000  0.00100

t= 0.0095  S=   242.2  N=   396.8  dN/dS=  0.0010  dN = 0.0000  dS = 0.0084


11 (Macaca_nemestrina) ... 7 (Papio_anubis)
lnL = -857.043193
  0.00953 999.00000  0.00100

t= 0.0095  S=   241.9  N=   397.1  dN/dS=  0.0010  dN = 0.0000  dS = 0.0084


11 (Macaca_nemestrina) ... 8 (Cercocebus_atys)
lnL = -851.767186
  0.00474 999.00000  0.00100

t= 0.0047  S=   242.1  N=   396.9  dN/dS=  0.0010  dN = 0.0000  dS = 0.0042


11 (Macaca_nemestrina) ... 9 (Pan_troglodytes)
lnL = -913.939025
  0.06283  9.60045  0.46033

t= 0.0628  S=   226.4  N=   412.6  dN/dS=  0.4603  dN = 0.0148  dS = 0.0321


11 (Macaca_nemestrina) ... 10 (Pteropus_vampyrus)
lnL =-1087.852701
  0.32047  2.58852  0.31906

t= 0.3205  S=   200.8  N=   438.2  dN/dS=  0.3191  dN = 0.0639  dS = 0.2004


12 (Homo_sapiens) ... 1 (Homo_sapiens)
lnL = -846.602726
  0.00001  1.50441  0.27421

t= 0.0000  S=   187.1  N=   451.9  dN/dS=  0.2742  dN = 0.0000  dS = 0.0000


12 (Homo_sapiens) ... 2 (Microcebus_murinus)
lnL =-1011.869460
  0.19368  3.27441  0.36150

t= 0.1937  S=   207.4  N=   431.6  dN/dS=  0.3615  dN = 0.0410  dS = 0.1135


12 (Homo_sapiens) ... 3 (Elephantulus_edwardii)
lnL =-1071.245715
  0.30791  2.44934  0.23245

t= 0.3079  S=   199.4  N=   439.6  dN/dS=  0.2325  dN = 0.0505  dS = 0.2175


12 (Homo_sapiens) ... 4 (Callithrix_jacchus)
lnL = -990.633606
  0.13308  1.05444  0.64794

t= 0.1331  S=   178.2  N=   460.8  dN/dS=  0.6479  dN = 0.0385  dS = 0.0595


12 (Homo_sapiens) ... 5 (Oryctolagus_cuniculus)
lnL =-1075.295013
  0.29144  3.34211  0.51250

t= 0.2914  S=   207.6  N=   431.4  dN/dS=  0.5125  dN = 0.0742  dS = 0.1448


12 (Homo_sapiens) ... 6 (Chlorocebus_sabaeus)
lnL = -910.070591
  0.05282  3.57143  1.28987

t= 0.0528  S=   207.9  N=   431.1  dN/dS=  1.2899  dN = 0.0190  dS = 0.0147


12 (Homo_sapiens) ... 7 (Papio_anubis)
lnL = -919.358703
  0.06262  4.28026  0.78830

t= 0.0626  S=   211.7  N=   427.3  dN/dS=  0.7883  dN = 0.0192  dS = 0.0243


12 (Homo_sapiens) ... 8 (Cercocebus_atys)
lnL = -914.977605
  0.05770  3.92954  0.97748

t= 0.0577  S=   210.0  N=   429.0  dN/dS=  0.9775  dN = 0.0191  dS = 0.0195


12 (Homo_sapiens) ... 9 (Pan_troglodytes)
lnL = -885.417715
  0.02861  3.90897  0.98310

t= 0.0286  S=   210.9  N=   428.1  dN/dS=  0.9831  dN = 0.0095  dS = 0.0096


12 (Homo_sapiens) ... 10 (Pteropus_vampyrus)
lnL =-1077.078528
  0.28792  1.91150  0.36596

t= 0.2879  S=   193.8  N=   445.2  dN/dS=  0.3660  dN = 0.0629  dS = 0.1719


12 (Homo_sapiens) ... 11 (Macaca_nemestrina)
lnL = -918.733189
  0.06262  4.27840  0.78802

t= 0.0626  S=   211.7  N=   427.3  dN/dS=  0.7880  dN = 0.0192  dS = 0.0243


13 (Macaca_fascicularis) ... 1 (Homo_sapiens)
lnL = -919.693581
  0.06270  3.00525  0.74052

t= 0.0627  S=   203.7  N=   435.3  dN/dS=  0.7405  dN = 0.0188  dS = 0.0254


13 (Macaca_fascicularis) ... 2 (Microcebus_murinus)
lnL =-1026.050749
  0.22971  4.57844  0.31494

t= 0.2297  S=   214.5  N=   424.5  dN/dS=  0.3149  dN = 0.0443  dS = 0.1405


13 (Macaca_fascicularis) ... 3 (Elephantulus_edwardii)
lnL =-1083.212416
  0.35116  3.19091  0.21351

t= 0.3512  S=   204.8  N=   434.2  dN/dS=  0.2135  dN = 0.0537  dS = 0.2514


13 (Macaca_fascicularis) ... 4 (Callithrix_jacchus)
lnL =-1014.635332
  0.16943  1.54826  0.50101

t= 0.1694  S=   187.1  N=   451.9  dN/dS=  0.5010  dN = 0.0437  dS = 0.0873


13 (Macaca_fascicularis) ... 5 (Oryctolagus_cuniculus)
lnL =-1086.372695
  0.32351  4.13175  0.45920

t= 0.3235  S=   211.8  N=   427.2  dN/dS=  0.4592  dN = 0.0776  dS = 0.1689


13 (Macaca_fascicularis) ... 6 (Chlorocebus_sabaeus)
lnL = -858.654886
  0.00958  1.16871  0.00100

t= 0.0096  S=   180.6  N=   458.4  dN/dS=  0.0010  dN = 0.0000  dS = 0.0113


13 (Macaca_fascicularis) ... 7 (Papio_anubis)
lnL = -858.319232
  0.00951  1.46679  0.00100

t= 0.0095  S=   185.8  N=   453.2  dN/dS=  0.0010  dN = 0.0000  dS = 0.0109


13 (Macaca_fascicularis) ... 8 (Cercocebus_atys)
lnL = -851.929451
  0.00479  0.40000  0.00100

t= 0.0048  S=   160.6  N=   478.4  dN/dS=  0.0010  dN = 0.0000  dS = 0.0063


13 (Macaca_fascicularis) ... 9 (Pan_troglodytes)
lnL = -915.602382
  0.06291  5.75295  0.43305

t= 0.0629  S=   218.1  N=   420.9  dN/dS=  0.4331  dN = 0.0145  dS = 0.0335


13 (Macaca_fascicularis) ... 10 (Pteropus_vampyrus)
lnL =-1088.295726
  0.32079  2.40886  0.31369

t= 0.3208  S=   199.0  N=   440.0  dN/dS=  0.3137  dN = 0.0636  dS = 0.2027


13 (Macaca_fascicularis) ... 11 (Macaca_nemestrina)
lnL = -857.651747
  0.00960  1.15327  0.00100

t= 0.0096  S=   180.1  N=   458.9  dN/dS=  0.0010  dN = 0.0000  dS = 0.0113


13 (Macaca_fascicularis) ... 12 (Homo_sapiens)
lnL = -919.693581
  0.06270  3.00524  0.74052

t= 0.0627  S=   203.7  N=   435.3  dN/dS=  0.7405  dN = 0.0188  dS = 0.0254


14 (Gorilla_gorilla_gorilla) ... 1 (Homo_sapiens)
lnL = -867.177073
  0.01432  1.21375 99.00000

t= 0.0143  S=   182.5  N=   456.5  dN/dS= 99.0000  dN = 0.0067  dS = 0.0001


14 (Gorilla_gorilla_gorilla) ... 2 (Microcebus_murinus)
lnL = -997.578482
  0.17852  3.60649  0.30139

t= 0.1785  S=   210.1  N=   428.9  dN/dS=  0.3014  dN = 0.0338  dS = 0.1120


14 (Gorilla_gorilla_gorilla) ... 3 (Elephantulus_edwardii)
lnL =-1058.063665
  0.29245  2.55624  0.20007

t= 0.2924  S=   200.9  N=   438.1  dN/dS=  0.2001  dN = 0.0432  dS = 0.2159


14 (Gorilla_gorilla_gorilla) ... 4 (Callithrix_jacchus)
lnL = -976.418160
  0.11793  1.03468  0.52443

t= 0.1179  S=   178.4  N=   460.6  dN/dS=  0.5244  dN = 0.0314  dS = 0.0598


14 (Gorilla_gorilla_gorilla) ... 5 (Oryctolagus_cuniculus)
lnL =-1062.996806
  0.27544  3.54769  0.46144

t= 0.2754  S=   209.4  N=   429.6  dN/dS=  0.4614  dN = 0.0664  dS = 0.1439


14 (Gorilla_gorilla_gorilla) ... 6 (Chlorocebus_sabaeus)
lnL = -892.838971
  0.03819  5.74613  0.86147

t= 0.0382  S=   218.3  N=   420.7  dN/dS=  0.8615  dN = 0.0121  dS = 0.0140


14 (Gorilla_gorilla_gorilla) ... 7 (Papio_anubis)
lnL = -901.985970
  0.04799  7.07991  0.52446

t= 0.0480  S=   221.8  N=   417.2  dN/dS=  0.5245  dN = 0.0122  dS = 0.0232


14 (Gorilla_gorilla_gorilla) ... 8 (Cercocebus_atys)
lnL = -897.673419
  0.04306  6.41680  0.65171

t= 0.0431  S=   220.2  N=   418.8  dN/dS=  0.6517  dN = 0.0121  dS = 0.0186


14 (Gorilla_gorilla_gorilla) ... 9 (Pan_troglodytes)
lnL = -864.179088
  0.01423 999.00000  0.30444

t= 0.0142  S=   243.9  N=   395.1  dN/dS=  0.3044  dN = 0.0025  dS = 0.0083


14 (Gorilla_gorilla_gorilla) ... 10 (Pteropus_vampyrus)
lnL =-1064.594821
  0.27202  1.95965  0.32460

t= 0.2720  S=   194.9  N=   444.1  dN/dS=  0.3246  dN = 0.0555  dS = 0.1709


14 (Gorilla_gorilla_gorilla) ... 11 (Macaca_nemestrina)
lnL = -901.341922
  0.04799  7.07772  0.52434

t= 0.0480  S=   221.8  N=   417.2  dN/dS=  0.5243  dN = 0.0122  dS = 0.0232


14 (Gorilla_gorilla_gorilla) ... 12 (Homo_sapiens)
lnL = -867.177073
  0.01432  1.21376 99.00000

t= 0.0143  S=   182.5  N=   456.5  dN/dS= 99.0000  dN = 0.0067  dS = 0.0001


14 (Gorilla_gorilla_gorilla) ... 13 (Macaca_fascicularis)
lnL = -902.700914
  0.04808  4.06686  0.48454

t= 0.0481  S=   211.0  N=   428.0  dN/dS=  0.4845  dN = 0.0119  dS = 0.0245


15 (Macaca_mulatta) ... 1 (Homo_sapiens)
lnL = -914.977605
  0.05770  3.92954  0.97748

t= 0.0577  S=   210.0  N=   429.0  dN/dS=  0.9775  dN = 0.0191  dS = 0.0195


15 (Macaca_mulatta) ... 2 (Microcebus_murinus)
lnL =-1023.031397
  0.22327  5.03575  0.33548

t= 0.2233  S=   216.5  N=   422.5  dN/dS=  0.3355  dN = 0.0445  dS = 0.1327


15 (Macaca_mulatta) ... 3 (Elephantulus_edwardii)
lnL =-1081.163187
  0.34325  3.34990  0.22316

t= 0.3432  S=   206.1  N=   432.9  dN/dS=  0.2232  dN = 0.0539  dS = 0.2415


15 (Macaca_mulatta) ... 4 (Callithrix_jacchus)
lnL =-1011.627330
  0.16384  1.66697  0.55109

t= 0.1638  S=   189.0  N=   450.0  dN/dS=  0.5511  dN = 0.0440  dS = 0.0799


15 (Macaca_mulatta) ... 5 (Oryctolagus_cuniculus)
lnL =-1083.634337
  0.31674  4.39114  0.48563

t= 0.3167  S=   213.2  N=   425.8  dN/dS=  0.4856  dN = 0.0780  dS = 0.1606


15 (Macaca_mulatta) ... 6 (Chlorocebus_sabaeus)
lnL = -852.765432
  0.00474 999.00000  0.00100

t= 0.0047  S=   242.4  N=   396.6  dN/dS=  0.0010  dN = 0.0000  dS = 0.0042


15 (Macaca_mulatta) ... 7 (Papio_anubis)
lnL = -852.418851
  0.00474 999.00000  0.00100

t= 0.0047  S=   242.1  N=   396.9  dN/dS=  0.0010  dN = 0.0000  dS = 0.0042


15 (Macaca_mulatta) ... 8 (Cercocebus_atys)
lnL = -845.743023
  0.00001  2.10841  0.06575

t= 0.0000  S=   194.9  N=   444.1  dN/dS=  0.0657  dN = 0.0000  dS = 0.0000


15 (Macaca_mulatta) ... 9 (Pan_troglodytes)
lnL = -910.700882
  0.05778  8.93642  0.53678

t= 0.0578  S=   225.6  N=   413.4  dN/dS=  0.5368  dN = 0.0148  dS = 0.0275


15 (Macaca_mulatta) ... 10 (Pteropus_vampyrus)
lnL =-1086.118608
  0.31376  2.52567  0.32970

t= 0.3138  S=   200.3  N=   438.7  dN/dS=  0.3297  dN = 0.0639  dS = 0.1937


15 (Macaca_mulatta) ... 11 (Macaca_nemestrina)
lnL = -851.767186
  0.00474 999.00000  0.00100

t= 0.0047  S=   242.1  N=   396.9  dN/dS=  0.0010  dN = 0.0000  dS = 0.0042


15 (Macaca_mulatta) ... 12 (Homo_sapiens)
lnL = -914.977605
  0.05770  3.92958  0.97749

t= 0.0577  S=   210.0  N=   429.0  dN/dS=  0.9775  dN = 0.0191  dS = 0.0195


15 (Macaca_mulatta) ... 13 (Macaca_fascicularis)
lnL = -851.929451
  0.00479  0.40000  0.00100

t= 0.0048  S=   160.6  N=   478.4  dN/dS=  0.0010  dN = 0.0000  dS = 0.0063


15 (Macaca_mulatta) ... 14 (Gorilla_gorilla_gorilla)
lnL = -897.673419
  0.04306  6.41693  0.65170

t= 0.0431  S=   220.2  N=   418.8  dN/dS=  0.6517  dN = 0.0121  dS = 0.0186


16 (Otolemur_garnettii) ... 1 (Homo_sapiens)
lnL =-1044.728258
  0.24691  3.58755  0.45106

t= 0.2469  S=   208.9  N=   430.1  dN/dS=  0.4511  dN = 0.0589  dS = 0.1305


16 (Otolemur_garnettii) ... 2 (Microcebus_murinus)
lnL = -978.876351
  0.15036  5.92774  0.49761

t= 0.1504  S=   220.2  N=   418.8  dN/dS=  0.4976  dN = 0.0372  dS = 0.0747


16 (Otolemur_garnettii) ... 3 (Elephantulus_edwardii)
lnL =-1085.268550
  0.35189  3.09633  0.28058

t= 0.3519  S=   205.6  N=   433.4  dN/dS=  0.2806  dN = 0.0643  dS = 0.2291


16 (Otolemur_garnettii) ... 4 (Callithrix_jacchus)
lnL =-1111.237740
  0.33616  2.14794  0.48310

t= 0.3362  S=   195.8  N=   443.2  dN/dS=  0.4831  dN = 0.0844  dS = 0.1747


16 (Otolemur_garnettii) ... 5 (Oryctolagus_cuniculus)
lnL =-1095.079889
  0.34078  3.59631  0.50225

t= 0.3408  S=   209.7  N=   429.3  dN/dS=  0.5023  dN = 0.0857  dS = 0.1707


16 (Otolemur_garnettii) ... 6 (Chlorocebus_sabaeus)
lnL =-1051.682855
  0.27100  4.93626  0.43110

t= 0.2710  S=   215.5  N=   423.5  dN/dS=  0.4311  dN = 0.0625  dS = 0.1450


16 (Otolemur_garnettii) ... 7 (Papio_anubis)
lnL =-1056.785976
  0.28395  5.17028  0.39941

t= 0.2840  S=   216.4  N=   422.6  dN/dS=  0.3994  dN = 0.0627  dS = 0.1570


16 (Otolemur_garnettii) ... 8 (Cercocebus_atys)
lnL =-1054.350114
  0.27742  5.05429  0.41478

t= 0.2774  S=   216.0  N=   423.0  dN/dS=  0.4148  dN = 0.0626  dS = 0.1510


16 (Otolemur_garnettii) ... 9 (Pan_troglodytes)
lnL =-1034.843548
  0.23649  4.06816  0.42088

t= 0.2365  S=   212.3  N=   426.7  dN/dS=  0.4209  dN = 0.0541  dS = 0.1285


16 (Otolemur_garnettii) ... 10 (Pteropus_vampyrus)
lnL =-1084.313107
  0.32032  2.62942  0.36371

t= 0.3203  S=   201.9  N=   437.1  dN/dS=  0.3637  dN = 0.0688  dS = 0.1891


16 (Otolemur_garnettii) ... 11 (Macaca_nemestrina)
lnL =-1052.480906
  0.27111  4.94555  0.43097

t= 0.2711  S=   215.5  N=   423.5  dN/dS=  0.4310  dN = 0.0625  dS = 0.1451


16 (Otolemur_garnettii) ... 12 (Homo_sapiens)
lnL =-1044.728258
  0.24691  3.58756  0.45106

t= 0.2469  S=   208.9  N=   430.1  dN/dS=  0.4511  dN = 0.0589  dS = 0.1305


16 (Otolemur_garnettii) ... 13 (Macaca_fascicularis)
lnL =-1057.224087
  0.28409  4.67987  0.39162

t= 0.2841  S=   214.3  N=   424.7  dN/dS=  0.3916  dN = 0.0623  dS = 0.1590


16 (Otolemur_garnettii) ... 14 (Gorilla_gorilla_gorilla)
lnL =-1031.202696
  0.23123  3.88317  0.39816

t= 0.2312  S=   211.1  N=   427.9  dN/dS=  0.3982  dN = 0.0514  dS = 0.1291


16 (Otolemur_garnettii) ... 15 (Macaca_mulatta)
lnL =-1054.350114
  0.27742  5.05429  0.41478

t= 0.2774  S=   216.0  N=   423.0  dN/dS=  0.4148  dN = 0.0626  dS = 0.1510


17 (Nomascus_leucogenys) ... 1 (Homo_sapiens)
lnL = -904.174268
  0.04798  4.71361  1.17731

t= 0.0480  S=   214.3  N=   424.7  dN/dS=  1.1773  dN = 0.0168  dS = 0.0143


17 (Nomascus_leucogenys) ... 2 (Microcebus_murinus)
lnL =-1019.225807
  0.21673  4.28999  0.34442

t= 0.2167  S=   213.3  N=   425.7  dN/dS=  0.3444  dN = 0.0442  dS = 0.1283


17 (Nomascus_leucogenys) ... 3 (Elephantulus_edwardii)
lnL =-1075.363843
  0.32882  2.87675  0.21955

t= 0.3288  S=   203.2  N=   435.8  dN/dS=  0.2195  dN = 0.0514  dS = 0.2343


17 (Nomascus_leucogenys) ... 4 (Callithrix_jacchus)
lnL =-1003.138945
  0.15367  1.66000  0.56154

t= 0.1537  S=   189.1  N=   449.9  dN/dS=  0.5615  dN = 0.0416  dS = 0.0741


17 (Nomascus_leucogenys) ... 5 (Oryctolagus_cuniculus)
lnL =-1081.863741
  0.31600  4.01412  0.48064

t= 0.3160  S=   211.6  N=   427.4  dN/dS=  0.4806  dN = 0.0776  dS = 0.1614


17 (Nomascus_leucogenys) ... 6 (Chlorocebus_sabaeus)
lnL = -916.201651
  0.06254  6.76111  1.18950

t= 0.0625  S=   220.7  N=   418.3  dN/dS=  1.1895  dN = 0.0221  dS = 0.0185


17 (Nomascus_leucogenys) ... 7 (Papio_anubis)
lnL = -924.905437
  0.07245  7.66307  0.79607

t= 0.0725  S=   222.7  N=   416.3  dN/dS=  0.7961  dN = 0.0222  dS = 0.0279


17 (Nomascus_leucogenys) ... 8 (Cercocebus_atys)
lnL = -920.776517
  0.06747  7.21371  0.95394

t= 0.0675  S=   221.8  N=   417.2  dN/dS=  0.9539  dN = 0.0221  dS = 0.0232


17 (Nomascus_leucogenys) ... 9 (Pan_troglodytes)
lnL = -899.453614
  0.04803 16.20566  0.56568

t= 0.0480  S=   233.0  N=   406.0  dN/dS=  0.5657  dN = 0.0125  dS = 0.0221


17 (Nomascus_leucogenys) ... 10 (Pteropus_vampyrus)
lnL =-1084.440115
  0.31232  2.35426  0.35238

t= 0.3123  S=   198.9  N=   440.1  dN/dS=  0.3524  dN = 0.0662  dS = 0.1879


17 (Nomascus_leucogenys) ... 11 (Macaca_nemestrina)
lnL = -924.271013
  0.07245  7.66126  0.79595

t= 0.0725  S=   222.7  N=   416.3  dN/dS=  0.7960  dN = 0.0222  dS = 0.0279


17 (Nomascus_leucogenys) ... 12 (Homo_sapiens)
lnL = -904.174268
  0.04798  4.71362  1.17731

t= 0.0480  S=   214.3  N=   424.7  dN/dS=  1.1773  dN = 0.0168  dS = 0.0143


17 (Nomascus_leucogenys) ... 13 (Macaca_fascicularis)
lnL = -925.781754
  0.07250  5.21209  0.75408

t= 0.0725  S=   215.7  N=   423.3  dN/dS=  0.7541  dN = 0.0218  dS = 0.0289


17 (Nomascus_leucogenys) ... 14 (Gorilla_gorilla_gorilla)
lnL = -885.970370
  0.03339 11.23155  0.74022

t= 0.0334  S=   229.1  N=   409.9  dN/dS=  0.7402  dN = 0.0099  dS = 0.0134


17 (Nomascus_leucogenys) ... 15 (Macaca_mulatta)
lnL = -920.776517
  0.06747  7.21379  0.95394

t= 0.0675  S=   221.8  N=   417.2  dN/dS=  0.9539  dN = 0.0221  dS = 0.0232


17 (Nomascus_leucogenys) ... 16 (Otolemur_garnettii)
lnL =-1050.821772
  0.27059  4.44018  0.42524

t= 0.2706  S=   213.3  N=   425.7  dN/dS=  0.4252  dN = 0.0622  dS = 0.1462


18 (Chrysochloris_asiatica) ... 1 (Homo_sapiens)
lnL =-1057.170448
  0.27616  3.13818  0.27251

t= 0.2762  S=   206.2  N=   432.8  dN/dS=  0.2725  dN = 0.0495  dS = 0.1815


18 (Chrysochloris_asiatica) ... 2 (Microcebus_murinus)
lnL =-1056.764109
  0.28733  3.53044  0.25888

t= 0.2873  S=   210.1  N=   428.9  dN/dS=  0.2589  dN = 0.0493  dS = 0.1906


18 (Chrysochloris_asiatica) ... 3 (Elephantulus_edwardii)
lnL =-1050.511849
  0.28111  2.85924  0.21927

t= 0.2811  S=   204.1  N=   434.9  dN/dS=  0.2193  dN = 0.0438  dS = 0.2000


18 (Chrysochloris_asiatica) ... 4 (Callithrix_jacchus)
lnL =-1128.829137
  0.37769  2.14321  0.34953

t= 0.3777  S=   196.2  N=   442.8  dN/dS=  0.3495  dN = 0.0801  dS = 0.2292


18 (Chrysochloris_asiatica) ... 5 (Oryctolagus_cuniculus)
lnL =-1097.967064
  0.34641  3.53605  0.41171

t= 0.3464  S=   209.9  N=   429.1  dN/dS=  0.4117  dN = 0.0786  dS = 0.1909


18 (Chrysochloris_asiatica) ... 6 (Chlorocebus_sabaeus)
lnL =-1073.768748
  0.31196  3.81545  0.29134

t= 0.3120  S=   210.5  N=   428.5  dN/dS=  0.2913  dN = 0.0577  dS = 0.1982


18 (Chrysochloris_asiatica) ... 7 (Papio_anubis)
lnL =-1078.374840
  0.32636  4.00662  0.27317

t= 0.3264  S=   211.5  N=   427.5  dN/dS=  0.2732  dN = 0.0578  dS = 0.2118


18 (Chrysochloris_asiatica) ... 8 (Cercocebus_atys)
lnL =-1076.205670
  0.31909  3.91260  0.28208

t= 0.3191  S=   211.0  N=   428.0  dN/dS=  0.2821  dN = 0.0578  dS = 0.2049


18 (Chrysochloris_asiatica) ... 9 (Pan_troglodytes)
lnL =-1056.103991
  0.27616  3.10784  0.25772

t= 0.2762  S=   206.7  N=   432.3  dN/dS=  0.2577  dN = 0.0477  dS = 0.1849


18 (Chrysochloris_asiatica) ... 10 (Pteropus_vampyrus)
lnL =-1095.840781
  0.32681  2.03590  0.34276

t= 0.3268  S=   196.0  N=   443.0  dN/dS=  0.3428  dN = 0.0686  dS = 0.2001


18 (Chrysochloris_asiatica) ... 11 (Macaca_nemestrina)
lnL =-1077.731929
  0.32624  4.00100  0.27323

t= 0.3262  S=   211.5  N=   427.5  dN/dS=  0.2732  dN = 0.0578  dS = 0.2117


18 (Chrysochloris_asiatica) ... 12 (Homo_sapiens)
lnL =-1057.170448
  0.27616  3.13818  0.27251

t= 0.2762  S=   206.2  N=   432.8  dN/dS=  0.2725  dN = 0.0495  dS = 0.1815


18 (Chrysochloris_asiatica) ... 13 (Macaca_fascicularis)
lnL =-1078.534069
  0.32648  3.68846  0.26858

t= 0.3265  S=   209.5  N=   429.5  dN/dS=  0.2686  dN = 0.0575  dS = 0.2140


18 (Chrysochloris_asiatica) ... 14 (Gorilla_gorilla_gorilla)
lnL =-1053.234276
  0.27020  2.99914  0.25766

t= 0.2702  S=   205.6  N=   433.4  dN/dS=  0.2577  dN = 0.0467  dS = 0.1814


18 (Chrysochloris_asiatica) ... 15 (Macaca_mulatta)
lnL =-1076.205670
  0.31909  3.91260  0.28208

t= 0.3191  S=   211.0  N=   428.0  dN/dS=  0.2821  dN = 0.0578  dS = 0.2049


18 (Chrysochloris_asiatica) ... 16 (Otolemur_garnettii)
lnL =-1074.441319
  0.31281  3.21447  0.29750

t= 0.3128  S=   206.9  N=   432.1  dN/dS=  0.2975  dN = 0.0591  dS = 0.1986


18 (Chrysochloris_asiatica) ... 17 (Nomascus_leucogenys)
lnL =-1072.910535
  0.31132  3.47853  0.28805

t= 0.3113  S=   208.5  N=   430.5  dN/dS=  0.2880  dN = 0.0574  dS = 0.1994


19 (Condylura_cristata) ... 1 (Homo_sapiens)
lnL =-1070.609610
  0.27228  3.14490  0.59277

t= 0.2723  S=   204.9  N=   434.1  dN/dS=  0.5928  dN = 0.0744  dS = 0.1255


19 (Condylura_cristata) ... 2 (Microcebus_murinus)
lnL =-1058.337237
  0.26430  3.73941  0.51035

t= 0.2643  S=   209.5  N=   429.5  dN/dS=  0.5103  dN = 0.0670  dS = 0.1313


19 (Condylura_cristata) ... 3 (Elephantulus_edwardii)
lnL =-1098.140437
  0.35029  2.94902  0.36925

t= 0.3503  S=   203.6  N=   435.4  dN/dS=  0.3692  dN = 0.0756  dS = 0.2048


19 (Condylura_cristata) ... 4 (Callithrix_jacchus)
lnL =-1136.516443
  0.36763  2.11301  0.59599

t= 0.3676  S=   195.1  N=   443.9  dN/dS=  0.5960  dN = 0.1015  dS = 0.1704


19 (Condylura_cristata) ... 5 (Oryctolagus_cuniculus)
lnL =-1099.996760
  0.32453  3.14507  0.68578

t= 0.3245  S=   205.8  N=   433.2  dN/dS=  0.6858  dN = 0.0943  dS = 0.1375


19 (Condylura_cristata) ... 6 (Chlorocebus_sabaeus)
lnL =-1078.214641
  0.29622  4.16302  0.55807

t= 0.2962  S=   210.8  N=   428.2  dN/dS=  0.5581  dN = 0.0783  dS = 0.1403


19 (Condylura_cristata) ... 7 (Papio_anubis)
lnL =-1083.534078
  0.30878  4.35024  0.51606

t= 0.3088  S=   211.7  N=   427.3  dN/dS=  0.5161  dN = 0.0785  dS = 0.1522


19 (Condylura_cristata) ... 8 (Cercocebus_atys)
lnL =-1081.071477
  0.30245  4.25785  0.53641

t= 0.3025  S=   211.3  N=   427.7  dN/dS=  0.5364  dN = 0.0784  dS = 0.1462


19 (Condylura_cristata) ... 9 (Pan_troglodytes)
lnL =-1061.664435
  0.26163  3.47238  0.56184

t= 0.2616  S=   207.9  N=   431.1  dN/dS=  0.5618  dN = 0.0696  dS = 0.1238


19 (Condylura_cristata) ... 10 (Pteropus_vampyrus)
lnL =-1059.401666
  0.24513  2.23859  0.62089

t= 0.2451  S=   197.5  N=   441.5  dN/dS=  0.6209  dN = 0.0687  dS = 0.1107


19 (Condylura_cristata) ... 11 (Macaca_nemestrina)
lnL =-1082.944114
  0.30873  4.34663  0.51612

t= 0.3087  S=   211.7  N=   427.3  dN/dS=  0.5161  dN = 0.0785  dS = 0.1521


19 (Condylura_cristata) ... 12 (Homo_sapiens)
lnL =-1070.609610
  0.27228  3.14490  0.59277

t= 0.2723  S=   204.9  N=   434.1  dN/dS=  0.5928  dN = 0.0744  dS = 0.1255


19 (Condylura_cristata) ... 13 (Macaca_fascicularis)
lnL =-1083.851484
  0.30885  4.00329  0.50669

t= 0.3088  S=   209.9  N=   429.1  dN/dS=  0.5067  dN = 0.0780  dS = 0.1540


19 (Condylura_cristata) ... 14 (Gorilla_gorilla_gorilla)
lnL =-1058.294584
  0.25617  3.32877  0.53672

t= 0.2562  S=   206.7  N=   432.3  dN/dS=  0.5367  dN = 0.0668  dS = 0.1244


19 (Condylura_cristata) ... 15 (Macaca_mulatta)
lnL =-1081.071477
  0.30245  4.25785  0.53641

t= 0.3025  S=   211.3  N=   427.7  dN/dS=  0.5364  dN = 0.0784  dS = 0.1462


19 (Condylura_cristata) ... 16 (Otolemur_garnettii)
lnL =-1074.557466
  0.29165  3.31893  0.47341

t= 0.2916  S=   205.9  N=   433.1  dN/dS=  0.4734  dN = 0.0716  dS = 0.1512


19 (Condylura_cristata) ... 17 (Nomascus_leucogenys)
lnL =-1077.717506
  0.29590  3.81305  0.55093

t= 0.2959  S=   208.9  N=   430.1  dN/dS=  0.5509  dN = 0.0779  dS = 0.1414


19 (Condylura_cristata) ... 18 (Chrysochloris_asiatica)
lnL =-1086.321737
  0.30378  3.07324  0.51129

t= 0.3038  S=   204.8  N=   434.2  dN/dS=  0.5113  dN = 0.0775  dS = 0.1516
