# Generated by roxygen2: do not edit by hand

export(Intercept)
export(N)
export(N.validity)
export(Shape)
export(addDesignMatrix)
export(addShapeValues)
export(buildRawRegressionFormula)
export(convertSeq2RegEx)
export(countDNAseqLength)
export(featureSet)
export(g_legend)
export(getKmerCountAffinities)
export(getProbeCounts)
export(getRoundDesign)
export(iterateSelexGLM)
export(model)
export(plotPSAM)
export(plotPSAMComp.Ratios)
export(plotPSAMComp.Scatter)
export(revComp)
export(scoreKmers)
export(set_panel_size)
export(topModelMatch)
export(updatedRegressionFormula)
export(validFeatureSet)
export(validIntercept)
export(validModel)
export(validShape)
export(verticalPlot_height)
exportMethods("addSeedPsam<-")
exportMethods("setAffinityType<-")
exportMethods("setConfidenceLevel<-")
exportMethods("setConsensusSeq<-")
exportMethods("setDateBetasLastAdded<-")
exportMethods("setDateInitialized<-")
exportMethods("setDateLastModified<-")
exportMethods("setDesignMatrixSummary<-")
exportMethods("setDownFootprintExtend<-")
exportMethods("setEquivMat<-")
exportMethods("setErrors<-")
exportMethods("setExDownBases<-")
exportMethods("setExUpBases<-")
exportMethods("setFeatures<-")
exportMethods("setFpLen<-")
exportMethods("setFsDownFootprintExtend<-")
exportMethods("setFsUpFootprintExtend<-")
exportMethods("setGlmFits<-")
exportMethods("setIncludeDNAstrand<-")
exportMethods("setIncludeShape<-")
exportMethods("setIncludeView<-")
exportMethods("setIntercept<-")
exportMethods("setIteration<-")
exportMethods("setLeftFixedSeq<-")
exportMethods("setLeftFixedSeqOverlap<-")
exportMethods("setMinAffinity<-")
exportMethods("setMinSeedValue<-")
exportMethods("setMissingValueSuppression<-")
exportMethods("setN<-")
exportMethods("setName<-")
exportMethods("setNumViews<-")
exportMethods("setOldErrors<-")
exportMethods("setOldSig<-")
exportMethods("setOldValues<-")
exportMethods("setOldZ<-")
exportMethods("setPositions<-")
exportMethods("setRcSymmetric<-")
exportMethods("setRegressionFormula<-")
exportMethods("setRightFixedSeq<-")
exportMethods("setRightFixedSeqOverlap<-")
exportMethods("setRounds<-")
exportMethods("setSeedLen<-")
exportMethods("setShape<-")
exportMethods("setShapeParamsUsed<-")
exportMethods("setShapeTable<-")
exportMethods("setSig<-")
exportMethods("setUpFootprintExtend<-")
exportMethods("setUseFixedValuesOffset.N<-")
exportMethods("setUseFixedValuesOffset.Shape<-")
exportMethods("setValues<-")
exportMethods("setVarRegLen<-")
exportMethods("setVerbose<-")
exportMethods("setZ<-")
exportMethods(addNewBetas)
exportMethods(finalizeFeatureBetas)
exportMethods(getAffinityType)
exportMethods(getConfidenceLevel)
exportMethods(getConsensusSeq)
exportMethods(getDateBetasLastAdded)
exportMethods(getDateInitialized)
exportMethods(getDateLastModified)
exportMethods(getDesignMatrix)
exportMethods(getDesignMatrixSummary)
exportMethods(getDownFootprintExtend)
exportMethods(getEquivMat)
exportMethods(getErrors)
exportMethods(getExDownBases)
exportMethods(getExUpBases)
exportMethods(getFeatureDesign)
exportMethods(getFeatures)
exportMethods(getFpLen)
exportMethods(getFsDownFootprintExtend)
exportMethods(getFsUpFootprintExtend)
exportMethods(getGlmFits)
exportMethods(getIncludeDNAstrand)
exportMethods(getIncludeShape)
exportMethods(getIncludeView)
exportMethods(getIntercept)
exportMethods(getIteration)
exportMethods(getLeftFixedSeq)
exportMethods(getLeftFixedSeqOverlap)
exportMethods(getMinAffinity)
exportMethods(getMinSeedValue)
exportMethods(getMissingValueSuppression)
exportMethods(getN)
exportMethods(getName)
exportMethods(getNumViews)
exportMethods(getOldErrors)
exportMethods(getOldSig)
exportMethods(getOldValues)
exportMethods(getOldZ)
exportMethods(getPSAM)
exportMethods(getPositions)
exportMethods(getRcSymmetric)
exportMethods(getRegressionFormula)
exportMethods(getRightFixedSeq)
exportMethods(getRightFixedSeqOverlap)
exportMethods(getRounds)
exportMethods(getSeedLen)
exportMethods(getShape)
exportMethods(getShapeParamsUsed)
exportMethods(getShapeTable)
exportMethods(getSig)
exportMethods(getTopSeqLabels)
exportMethods(getUpFootprintExtend)
exportMethods(getUseFixedValuesOffset.N)
exportMethods(getUseFixedValuesOffset.Shape)
exportMethods(getValues)
exportMethods(getVarRegLen)
exportMethods(getVerbose)
exportMethods(getZ)
exportMethods(initialize)
exportMethods(length)
exportMethods(plot)
exportMethods(plotZs)
exportMethods(print)
exportMethods(seedTable2psam)
exportMethods(show)
exportMethods(summary)
importFrom(RColorBrewer,brewer.pal)
importFrom(ggplot2,ggplot_build)
importFrom(ggplot2,ggplot_gtable)
