Package: SelexGLM
Type: Package
Title: Functions for performing feature-based analyis of SELEX-seq data
        using generalized linear models
Version: 0.99
Date: 2016-01-05
Author: Gabriella D. Martini, Harmen J. Bussemaker
Maintainer: Harmen J. Bussemaker <hjb2004@columbia.edu>
Description: This packages provides fucntionalility for feature-based analysis 
    of SELEX data using generalized linear models.
License: GPL-3
RoxygenNote: 6.0.1
Imports: Biostrings, SELEX, stringi, ggplot2, reshape2
Depends: methods, RColorBrewer
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
Collate: 'generic-functions-definitions.R' 'Intercept-validity.R'
        'Intercept-class.R' 'plottingTools.R' 'N-validity.R'
        'N-class.R' 'Shape-validity.R' 'Shape-class.R'
        'topModelMatch.R' 'addDesignMatrix.R'
        'buildRawRegressionFormula.R' 'dnaSequenceTools.R'
        'featureSet-validity.R' 'featureSet-class.R'
        'getKmerCountAffinities.R' 'getProbeCounts.R'
        'updatedRegressionFormula.R' 'iterateSelexGLM.R'
        'model-validity.R' 'model-class.R' 'package-SelexGLM.R'
        'scoreKmers.R'
NeedsCompilation: no
Packaged: 2017-11-21 17:10:34 UTC; HJB
