# problems/questions contact joseph.ryan@whitney.ufl.edu

the cmp_lens.pl script requires the outputs of our leapfrog runs (leaps directory) and the FASTA files for each of the flatworm transcriptomes.
These FASTA files can be downloaded here:
    http://ryanlab.whitney.ufl.edu/downloads/Martin_duran_et_al_2017_transcriptomes.tar.gz

The following commands should work on most systems (run from w/in this directory):

    lwp-download http://ryanlab.whitney.ufl.edu/downloads/Martin_duran_et_al_2017_transcriptomes.tar.gz
    gzip -dc Martin_duran_et_al_2017_transcriptomes.tar.gz | tar -xvf -
    perl cmp_lens.pl

# The output should match: cmp_lens.out
# cmp_lens.out is Supplementary Table 7

