README

Use this jar to convert an hcm file to an h5 file, which is required for the web-based viewer.  

Example usage: java -jar HcmToHdfConverter.jar chr10 inputFile.hcm outputFile.h5

Arguments:
	1) Chromosome. Mandatory. Must be in form chrN.
	2) Input file. Mandatory. Must be in hcm format.
	3) Output file. Optional. If omitted, ouput will have the same name as input but with hcm replaced by h5.