Package broad.pda.seq.rap

Packages
package	rna

Classes
class	BuildRatioNullDistribution
class	CalculateCoverageStats
class	CollectAnnotationEnrichments
class	CountProbes
class	CountReads
class	DistanceToBED
class	GCContent
class	GenomeCommandLineProgram
class	GenomeScoringProgram
class	PlotAggregateRegions
class	RAPPeakCaller
class	RatioPermutationPeakCaller
class	ShuffleBAM
class	ShuffleBED
class	SkellamKLPeakCaller
class	SkellamScore
class	SlideAndCalculate
class	SlideAndCount
class	UnmarkDuplicates