ESAT
 All Classes Namespaces Files Functions Variables Enumerator Pages
Classes
Package broad.core.annotation

Classes

interface  AnnotationFactory< T extends LightweightGenomicAnnotation >
 
class  AnnotationFactoryFactory
 
interface  AnnotationHandler
 
class  AnnotationReader< T extends GenomicAnnotation >
 
class  AnnotationReaderFactory
 
class  AnnotationUtils
 
class  BasicAnnotationReader
 
class  BasicGenomicAnnotation
 
class  BasicGenomicAnnotationReader
 
class  BasicLightweightAnnotation
 
class  BasicTwoSubjectAnnotation
 
class  BED
 
class  BEDGraph
 
class  BEDGraphReader
 
class  BEDReader
 
interface  Feature
 
interface  GenomicAnnotation
 
interface  GenomicAnnotationFilter< T extends LightweightGenomicAnnotation >
 
class  GFF
 
class  GFFReader
 
interface  LightweightGenomicAnnotation
 
class  MaximumContiguousSubsequence
 
class  RepeatMaskerAnnotation
 
class  RepeatMaskerAnnotationReader
 
class  ShortBED
 
class  ShortBEDReader
 
class  SimpleAnnotationHandler
 
interface  TwoSubjectAnnotation