umms.core.model.score.WindowScore Interface Reference

Inheritance diagram for umms.core.model.score.WindowScore:

Classes
class	AbstractWindowScore

Public Member Functions
Annotation	getAnnotation ()
double	getScore ()

Detailed Description

Represents a window scoring object. All of the code for calculating scores should be included in implementers of this class

Member Function Documentation

Annotation umms.core.model.score.WindowScore.getAnnotation

(

)

Returns the underlying window

Implemented in umms.core.model.score.WindowScore.AbstractWindowScore.

double umms.core.model.score.WindowScore.getScore

(

)

Returns the number of reads overlapping this region

Returns

number of reds overlapping this window Returns the "score" as defined by each subclass (e.g. count, ratio, sum of annotation scores, etc.)

Implemented in umms.core.model.score.CountScore, umms.core.model.score.WindowAllScore, umms.core.model.score.RatioScore, umms.core.model.score.NewRatioScore, umms.core.model.score.SumScore, umms.core.model.score.EndInWindowCountScore, umms.core.model.score.StartInWindowCountScore, and umms.core.model.score.AbstractListScore.

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The documentation for this interface was generated from the following file:

• java/umms/core/model/score/WindowScore.java