broad.core.primer3.Primer3PickingSummary Interface Reference

Public Member Functions
int	getNumOligosTested ()
int	getNumNs ()
int	getNumOverlappingTargets ()
int	getNumOverlappingExcludedRegions ()
int	getNumGC ()
int	getNumGCClampFailures ()
int	getNumColdMeltingTemp ()
int	getNumHotMeltingTemp ()
int	getNumSelfComplementarityAnywhere ()
int	getNum3PrimeComplementarity ()
int	getNumMispriming ()
int	getNumPolyX ()
int	getNumSeqQuality ()
int	getNum3PrimerStability ()
int	getNumOk ()

Detailed Description

A Primer3PickingSummary is a summary of how many primers primer3 picked in a primer picking session. It includes detailed summary information about why primers were rejected

It's really a java wrapper around the primer3 oligo_struts typedef struct.

Author

Andrew R. Zimmer

Member Function Documentation

int broad.core.primer3.Primer3PickingSummary.getNum3PrimeComplementarity

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int broad.core.primer3.Primer3PickingSummary.getNum3PrimerStability

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int broad.core.primer3.Primer3PickingSummary.getNumColdMeltingTemp

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int broad.core.primer3.Primer3PickingSummary.getNumGC

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int broad.core.primer3.Primer3PickingSummary.getNumGCClampFailures

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int broad.core.primer3.Primer3PickingSummary.getNumHotMeltingTemp

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int broad.core.primer3.Primer3PickingSummary.getNumMispriming

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int broad.core.primer3.Primer3PickingSummary.getNumNs

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int broad.core.primer3.Primer3PickingSummary.getNumOk

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int broad.core.primer3.Primer3PickingSummary.getNumOligosTested

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int broad.core.primer3.Primer3PickingSummary.getNumOverlappingExcludedRegions

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int broad.core.primer3.Primer3PickingSummary.getNumOverlappingTargets

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int broad.core.primer3.Primer3PickingSummary.getNumPolyX

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int broad.core.primer3.Primer3PickingSummary.getNumSelfComplementarityAnywhere

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int broad.core.primer3.Primer3PickingSummary.getNumSeqQuality

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)

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The documentation for this interface was generated from the following file:

• java/broad/core/primer3/Primer3PickingSummary.java