Inheritance diagram for broad.core.multiplealignment.MultipleAlignmentIO:

Public Member Functions
MultipleAlignment	load (String fileName) throws IOException, ParseException

MultipleAlignment	load (InputStream in) throws IOException, ParseException

MultipleAlignment	load (String fileName, List< String > sequencesToLoad) throws IOException, ParseException

MultipleAlignment	load (InputStream in, List< String > sequencesToLoad) throws IOException, ParseException

void	write (BufferedWriter bw, MultipleAlignment ma) throws IOException

void	write (BufferedWriter bw, MultipleAlignment ma, List< String > orderOfSequences) throws IOException

String	getPreferredFileExtension ()

Member Function Documentation

String broad.core.multiplealignment.MultipleAlignmentIO.getPreferredFileExtension ( )

MultipleAlignment broad.core.multiplealignment.MultipleAlignmentIO.load ( String fileName ) throws IOException, ParseException

MultipleAlignment broad.core.multiplealignment.MultipleAlignmentIO.load ( InputStream in ) throws IOException, ParseException

MultipleAlignment broad.core.multiplealignment.MultipleAlignmentIO.load	(	String	fileName,
		List< String >	sequencesToLoad
	)		throws IOException, ParseException

MultipleAlignment broad.core.multiplealignment.MultipleAlignmentIO.load	(	InputStream	in,
		List< String >	sequencesToLoad
	)		throws IOException, ParseException

void broad.core.multiplealignment.MultipleAlignmentIO.write	(	BufferedWriter	bw,
		MultipleAlignment	ma
	)		throws IOException

void broad.core.multiplealignment.MultipleAlignmentIO.write	(	BufferedWriter	bw,
		MultipleAlignment	ma,
		List< String >	orderOfSequences
	)		throws IOException

The documentation for this interface was generated from the following file:

Public Member Functions