broad.core.multiplealignment.MultipleAlignmentIO Member List

This is the complete list of members for broad.core.multiplealignment.MultipleAlignmentIO, including all inherited members.

getPreferredFileExtension()	broad.core.multiplealignment.MultipleAlignmentIO
load(String fileName)	broad.core.multiplealignment.MultipleAlignmentIO
load(InputStream in)	broad.core.multiplealignment.MultipleAlignmentIO
load(String fileName, List< String > sequencesToLoad)	broad.core.multiplealignment.MultipleAlignmentIO
load(InputStream in, List< String > sequencesToLoad)	broad.core.multiplealignment.MultipleAlignmentIO
write(BufferedWriter bw, MultipleAlignment ma)	broad.core.multiplealignment.MultipleAlignmentIO
write(BufferedWriter bw, MultipleAlignment ma, List< String > orderOfSequences)	broad.core.multiplealignment.MultipleAlignmentIO