| T broad.core.hmm.MarkovState< T >.emitObservation |
( |
| ) |
|
Uses its background distribution to emit a sampled observation.
- Returns
| double broad.core.hmm.MarkovState< T >.getEmissionLogProbability |
( |
T |
observation | ) |
|
In many cases the implementing class may be able to implement this method so that the logarithm is not on every call.
- Parameters
-
| observation | The roll of a dice, an alignment column, a nucleotide, etc. |
- Returns
- natural log of P(observation | this state)
| double broad.core.hmm.MarkovState< T >.getEmissionProbability |
( |
T |
observation | ) |
|
- Parameters
-
| observation | The roll of a dice, an alignment column, a nucleotide, etc. |
- Returns
- P(observation | this state)
| String broad.core.hmm.MarkovState< T >.getName |
( |
| ) |
|
- Returns
- The name of this Markov State
The documentation for this interface was generated from the following file:
1.8.7
