- t -

• T7BASES : broad.pda.seq.rap.CountProbes
• T_CODE : broad.core.multiplealignment.MultipleAlignment
• TAB : jaligner.util.Commons
• TARGET : broad.pda.seq.rap.BuildRatioNullDistribution , broad.pda.seq.rap.GenomeScoringProgram , broad.pda.seq.rap.RatioPermutationPeakCaller , broad.pda.seq.rap.rna.TranscriptomeScoringProgram , broad.pda.seq.rap.SkellamKLPeakCaller
• threeFoldDegenerateCodons : broad.core.multiplealignment.AlignmentExtractor
• totalCount : broad.pda.enrichment.EnrichmentMetric
• TRANSCRIPTION_READ : broad.pda.seq.rap.rna.TranscriptomeCommandLineProgram
• transcriptomeSpace : broad.pda.seq.protection.TwoSampleScanSkellamPeakCaller
• TRIM : broad.pda.seq.rap.RatioPermutationPeakCaller
• trimPeakByQuantile : broad.pda.seq.protection.TwoSampleScanSkellamPeakCaller
• ts : broad.pda.seq.rap.rna.TranscriptomeCommandLineProgram
• twoFoldDegenerateCodons : broad.core.multiplealignment.AlignmentExtractor