- p -

• PAIRED : broad.pda.seq.graph.ChromosomeWithBubblesJGraphT.EdgeSourceType
• PAIRED_END : broad.pda.seq.rap.CollectAnnotationEnrichments , broad.pda.seq.rap.GenomeScoringProgram , broad.pda.seq.rap.rna.TranscriptomeScoringProgram
• PAIRED_END_EXTENSION : umms.core.writers.PairedEndWriter
• PAIRED_SUPPORT : broad.pda.seq.graph.ChromosomeWithBubblesJGraphT.EdgeSourceType
• PCT_MASKED_ALLOWED : broad.pda.seq.rap.GenomeCommandLineProgram
• PERMUTATION_ATTEMPTS : umms.core.coordinatesystem.GenomicSpace , umms.core.coordinatesystem.TranscriptInGenomicSpace , umms.core.coordinatesystem.TranscriptomeSpace
• PERMUTATIONS : broad.pda.seq.rap.BuildRatioNullDistribution , broad.pda.seq.rap.CollectAnnotationEnrichments , broad.pda.seq.rap.ShuffleBAM , broad.pda.seq.rap.ShuffleBED
• PERMUTE : broad.pda.seq.rap.CollectAnnotationEnrichments
• POINT_MATH : broad.pda.seq.rap.DistanceToBED
• POINT_PATTERN : broad.core.annotation.BasicGenomicAnnotationReader
• POSITIVE : umms.core.annotation.Annotation.Strand
• PROTEIN : jaligner.Sequence
• pValueCutoffScan : broad.pda.seq.protection.TwoSampleScanSkellamPeakCaller
• pValueCutoffSkellam : broad.pda.seq.protection.TwoSampleScanSkellamPeakCaller