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• offset : broad.core.sequence.AbstractFastaParser
• ORIGINAL_ARRAY_LEFT : broad.pda.seq.rap.CountProbes
• ORIGINAL_ARRAY_RIGHT : broad.pda.seq.rap.CountProbes
• OUTER_LENGTH : broad.pda.seq.rap.PlotAggregateRegions
• OUTPUT : broad.pda.samtools.FilterPairedReadsByMAQ , broad.pda.samtools.PairedEndTDF , broad.pda.samtools.TrimFastqReads , broad.pda.seq.rap.BuildRatioNullDistribution , broad.pda.seq.rap.CalculateCoverageStats , broad.pda.seq.rap.CollectAnnotationEnrichments , broad.pda.seq.rap.CountProbes , broad.pda.seq.rap.CountReads , broad.pda.seq.rap.DistanceToBED , broad.pda.seq.rap.GCContent , broad.pda.seq.rap.PlotAggregateRegions , broad.pda.seq.rap.RatioPermutationPeakCaller , broad.pda.seq.rap.rna.CountReads , broad.pda.seq.rap.ShuffleBAM , broad.pda.seq.rap.ShuffleBED , broad.pda.seq.rap.SkellamKLPeakCaller , broad.pda.seq.rap.SlideAndCalculate , broad.pda.seq.rap.SlideAndCount , broad.pda.seq.rap.UnmarkDuplicates
• OUTPUT_1 : broad.pda.samtools.FilterFastqReads
• OUTPUT_2 : broad.pda.samtools.FilterFastqReads
• OVERLAP : broad.pda.seq.rap.BuildRatioNullDistribution , broad.pda.seq.rap.CountProbes , broad.pda.seq.rap.PlotAggregateRegions , broad.pda.seq.rap.RatioPermutationPeakCaller , broad.pda.seq.rap.SkellamKLPeakCaller , broad.pda.seq.rap.SlideAndCalculate , broad.pda.seq.rap.SlideAndCount