Here is a list of all class members with links to the classes they belong to:

- n -

• name : broad.pda.enrichment.EnrichmentMetric
• nanostringHeader : broad.pda.rnai.RNAiGeneAnnotation
• NEGATIVE : umms.core.annotation.Annotation.Strand
• NeighborAnalysis() : broad.pda.gene.NeighborAnalysis
• NeighborsNullModel() : broad.pda.gene.NeighborsNullModel
• newBase() : broad.core.sequence.FastaHandler
• newQuality() : broad.core.sequence.FastaQualityHandler
• NewRatioScore() : umms.core.model.score.NewRatioScore
• newSequence() : broad.core.sequence.FastaHandler
• newWindow() : broad.core.siphy.ScaledWindowParserListener
• next() : broad.core.datastructures.IntervalTree< V >.FwdIterator , broad.core.datastructures.IntervalTree< V >.OverlapIterator , broad.core.datastructures.IntervalTree< V >.RevIterator , broad.core.datastructures.JCSCache.JCSNodeIterator , broad.core.datastructures.ReversibleIterator< E > , broad.core.sequence.WindowSlider , broad.pda.samtools.PairedEndReadIterator , broad.pda.samtools.WrappedIterator , broad.pda.seq.fastq.FastqParser , broad.pda.seq.segmentation.WrappedIGVIterator , umms.core.coordinatesystem.ShuffledIterator< T extends Annotation > , umms.core.general.CloseableFilterIterator< T > , umms.core.model.AlignmentModel.FilteredIterator , umms.core.model.AlignmentModel.NodeIterator , umms.core.model.AlignmentModel.WrapAlignmentCountIterator , umms.core.model.JCSAlignmentModel.FilteredIterator , umms.core.model.JCSAlignmentModel.NodeIterator , umms.core.model.JCSAlignmentModel.WrapAlignmentCountIterator , umms.core.model.score.WindowScoreIterator< T extends WindowScore >
• noncentralChiSquareCdf() : broad.core.math.Distribution
• noncentralChiSquareDensity() : broad.core.math.Distribution
• nonDegenerateCodons : broad.core.multiplealignment.AlignmentExtractor
• norm1() : Jama.Matrix
• norm2() : Jama.Matrix , Jama.SingularValueDecomposition
• normalize() : broad.pda.seq.segmentation.ReadCountNormalizer
• normalizeBy() : broad.core.datastructures.MatrixWithHeaders
• normalizeByMean() : broad.core.datastructures.MatrixWithHeaders
• normalizeColumnsByMean() : broad.core.datastructures.MatrixWithHeaders
• normalizeColumnsByMedian() : broad.core.datastructures.MatrixWithHeaders
• normalizeReadCountsToBaseModel() : broad.pda.seq.segmentation.AlignmentDataModelStats
• normalizeToRelativeAbundance() : broad.core.math.Statistics
• normF() : Jama.Matrix
• normInf() : Jama.Matrix
• not() : umms.core.general.Predicates
• NUCLEIC : jaligner.Sequence
• NULL_DIST : broad.pda.seq.rap.RatioPermutationPeakCaller
• numberCovered() : broad.core.annotation.AnnotationReader< T extends GenomicAnnotation >
• numBins() : broad.core.math.EmpiricalDistribution
• numBlocks() : broad.core.sequence.SequenceRegion , umms.core.annotation.Annotation , umms.core.annotation.BasicAnnotation , umms.core.annotation.CompoundInterval
• numControls : broad.pda.seq.protection.MultiSampleScanPeakCaller
• numOfAnnotation() : broad.core.annotation.AnnotationReader< T extends GenomicAnnotation >
• numOfCompatibleIntrons() : umms.core.annotation.Gene
• numOfOverlapSets() : broad.pda.annotation.Locus
• numOverlappers() : broad.core.datastructures.IntervalTree< V >
• numOverlappingBases() : broad.core.overlaputils.GeneSetIntersect
• numOverlappingExons() : umms.core.annotation.Gene
• numOverlappingGenes() : broad.core.overlaputils.GeneSetIntersect
• numPossibleKmers() : broad.core.motif.SequenceMotif
• numPossibleTargets() : umms.core.alignment.SmatchLike
• numSamples : broad.pda.seq.protection.MultiSampleScanPeakCaller
• numSignals : broad.pda.seq.protection.MultiSampleScanPeakCaller