- b -

• BadModelException() : broad.core.hmm.BadModelException
• BasicAnnotation() : umms.core.annotation.BasicAnnotation
• BasicAnnotationReader() : broad.core.annotation.BasicAnnotationReader
• BasicGenomicAnnotation() : broad.core.annotation.BasicGenomicAnnotation
• BasicGenomicAnnotationReader() : broad.core.annotation.BasicGenomicAnnotationReader
• BasicLightweightAnnotation() : broad.core.annotation.BasicLightweightAnnotation
• BasicScanStatisticScore() : umms.core.model.score.BasicScanStatisticScore
• BasicTwoSubjectAnnotation() : broad.core.annotation.BasicTwoSubjectAnnotation
• BatchNorm() : broad.pda.differentialExpression.BatchNorm
• BED() : broad.core.annotation.BED
• bed2CuffGtf() : broad.pda.annotation.BEDFileParser
• bed2gtf() : broad.pda.annotation.BEDFileParser
• bed2gtf_bundleOverlappers() : broad.pda.annotation.BEDFileParser
• BEDFileParser() : broad.pda.annotation.BEDFileParser
• BEDGraph() : broad.core.annotation.BEDGraph
• BEDGraphReader() : broad.core.annotation.BEDGraphReader
• BEDReader() : broad.core.annotation.BEDReader
• begin() : broad.core.annotation.AnnotationHandler , broad.pda.datastructures.LocationAwareMatrix
• binomialCoefficient() : broad.core.math.MathUtil
• BinomialEnrichmentScore() : umms.core.model.score.BinomialEnrichmentScore
• breakUpMultifile() : broad.core.sequence.FastaSequenceIO
• browserLine() : broad.core.annotation.AnnotationHandler , broad.pda.datastructures.LocationAwareMatrix
• buildKmerMap() : broad.core.sequence.Sequence
• BuildScriptureCoordinateSpace() : umms.core.scripture.BuildScriptureCoordinateSpace