Here is a list of all class members with links to the classes they belong to:

- b -

• BACKGROUND : broad.pda.seq.rap.SkellamKLPeakCaller
• backgroundData : broad.pda.seq.protection.TwoSampleScanSkellamPeakCaller
• backgroundName : broad.pda.seq.protection.TwoSampleScanSkellamPeakCaller
• backgroundProcessor : broad.pda.seq.protection.TwoSampleScanSkellamPeakCaller
• backgroundScanPvalues : broad.pda.seq.protection.TwoSampleScanSkellamPeakCaller
• BadModelException() : broad.core.hmm.BadModelException
• BAM_EXTENSION : broad.pda.seq.rap.CollectAnnotationEnrichments
• BasicAnnotation() : umms.core.annotation.BasicAnnotation
• BasicAnnotationReader() : broad.core.annotation.BasicAnnotationReader
• BasicGenomicAnnotation() : broad.core.annotation.BasicGenomicAnnotation
• basicGenomicAnnotationfactory : broad.core.annotation.AnnotationFactoryFactory
• BasicGenomicAnnotationReader() : broad.core.annotation.BasicGenomicAnnotationReader
• BasicLightweightAnnotation() : broad.core.annotation.BasicLightweightAnnotation
• BasicScanStatisticScore() : umms.core.model.score.BasicScanStatisticScore
• BasicTwoSubjectAnnotation() : broad.core.annotation.BasicTwoSubjectAnnotation
• BatchNorm() : broad.pda.differentialExpression.BatchNorm
• BbvI : broad.core.primer3.RestrictionEnzyme
• BceAI : broad.core.primer3.RestrictionEnzyme
• BED() : broad.core.annotation.BED
• bed2CuffGtf() : broad.pda.annotation.BEDFileParser
• bed2gtf() : broad.pda.annotation.BEDFileParser
• bed2gtf_bundleOverlappers() : broad.pda.annotation.BEDFileParser
• bedFactory : broad.core.annotation.AnnotationFactoryFactory
• BEDFileParser() : broad.pda.annotation.BEDFileParser
• BEDGraph() : broad.core.annotation.BEDGraph
• bedGraphFactory : broad.core.annotation.AnnotationFactoryFactory
• BEDGraphReader() : broad.core.annotation.BEDGraphReader
• BEDReader() : broad.core.annotation.BEDReader
• begin() : broad.core.annotation.AnnotationHandler , broad.pda.datastructures.LocationAwareMatrix
• binomialCoefficient() : broad.core.math.MathUtil
• BinomialEnrichmentScore() : umms.core.model.score.BinomialEnrichmentScore
• binomialWindowScores : broad.pda.seq.protection.MultiSampleScanPeakCaller
• blocks : umms.core.annotation.BasicAnnotation
• BpmI : broad.core.primer3.RestrictionEnzyme
• BpuEI : broad.core.primer3.RestrictionEnzyme
• breakUpMultifile() : broad.core.sequence.FastaSequenceIO
• browserLine() : broad.core.annotation.AnnotationHandler , broad.pda.datastructures.LocationAwareMatrix
• BsgI : broad.core.primer3.RestrictionEnzyme
• BsmFI : broad.core.primer3.RestrictionEnzyme
• BtgZI : broad.core.primer3.RestrictionEnzyme
• BUFFER : broad.pda.seq.rap.rna.CollectRnaSeqMetrics
• BUFFER_SIZE : broad.core.sequence.AbstractFastaParser , broad.core.sequence.FastaQualityBinaryIO
• buildKmerMap() : broad.core.sequence.Sequence
• BuildScriptureCoordinateSpace() : umms.core.scripture.BuildScriptureCoordinateSpace