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umms.esat.ESATDistanceCalculator Member List

This is the complete list of members for umms.esat.ESATDistanceCalculator, including all inherited members.

array2List(double[] array)umms.esat.ESATDistanceCalculatorstatic
calculateNormalizationFactors(MatrixWithHeaders mat)umms.esat.ESATDistanceCalculatorstatic
ESATDistanceCalculator(String[] args)umms.esat.ESATDistanceCalculator
getSubAnnotationFromEnd(Gene annotation, int length, int distanceFromTranscriptEnd)umms.esat.ESATDistanceCalculatorstatic
getSubAnnotationFromStart(Gene annotation, int length, int distanceFromTranscriptStart)umms.esat.ESATDistanceCalculatorstatic
main(String[] args)umms.esat.ESATDistanceCalculatorstatic
reconstructGeneEnds(BEDFileParser completeReconstruction, BEDFileParser annotations, String annotationFile)umms.esat.ESATDistanceCalculatorstatic
whitespaceDelimiterumms.esat.ESATDistanceCalculatorstatic
writeNormalizedMatrix(String fileName, MatrixWithHeaders resultMatrix)umms.esat.ESATDistanceCalculatorstatic