umms.core.utils.AnnotationUtils Member List

This is the complete list of members for umms.core.utils.AnnotationUtils, including all inherited members.

collapseOverlappers(Map< String, Collection< Gene >> genes, boolean ignoreStrand)	umms.core.utils.AnnotationUtils	static
getChildren(T parent, Map< String, Collection< T >> children)	umms.core.utils.AnnotationUtils	static
getLargestParent(T child, Map< String, Collection< T >> parents)	umms.core.utils.AnnotationUtils	static
getMidpoint(Annotation annot)	umms.core.utils.AnnotationUtils	static
getParents(T child, Map< String, Collection< T >> parents)	umms.core.utils.AnnotationUtils	static
getSubAnnotationMidpointWithinAnnotation(Annotation annot, Annotation subAnnot)	umms.core.utils.AnnotationUtils	static
loadAnnotations(String bedFile)	umms.core.utils.AnnotationUtils	static
logger	umms.core.utils.AnnotationUtils	static
mapChildToLargestParent(Map< String, Collection< T >> children, Map< String, Collection< T >> parents)	umms.core.utils.AnnotationUtils	static
mapChildToParents(Map< String, Collection< T >> children, Map< String, Collection< T >> parents)	umms.core.utils.AnnotationUtils	static
mapParentsToChildren(Map< String, Collection< T >> children, Map< String, Collection< T >> parents)	umms.core.utils.AnnotationUtils	static
mergeOverlappingBlocks(TreeSet<?extends Annotation > windows)	umms.core.utils.AnnotationUtils	static
mergeOverlappingBlocksSingleOrientation(Collection< T > regions, boolean enforceSameOrientation)	umms.core.utils.AnnotationUtils	static
pairwiseNonoverlappingIgnoreStrand(Collection< Annotation > regions)	umms.core.utils.AnnotationUtils	static