umms.core.scripture.statistics.ConnectDisconnectedTranscripts Class Reference

Collaboration diagram for umms.core.scripture.statistics.ConnectDisconnectedTranscripts:

Public Member Functions
	ConnectDisconnectedTranscripts (String annotationFile, String outputName, File bamFile, TranscriptionRead strand, int maxSize) throws IOException
void	doWork (String outputName) throws IOException

Static Public Member Functions
static Pair< Gene >	getOrderedAssembly (Gene gene1, Gene gene2)
static void	main (String[] args) throws ParseException, IOException

Constructor & Destructor Documentation

umms.core.scripture.statistics.ConnectDisconnectedTranscripts.ConnectDisconnectedTranscripts	(	String	annotationFile,
		String	outputName,
		File	bamFile,
		TranscriptionRead	strand,
		int	maxSize
	)		throws IOException

Here is the call graph for this function:

Here is the caller graph for this function:

Member Function Documentation

void umms.core.scripture.statistics.ConnectDisconnectedTranscripts.doWork

(

String

outputName

)

throws IOException

Here is the call graph for this function:

Here is the caller graph for this function:

static Pair<Gene> umms.core.scripture.statistics.ConnectDisconnectedTranscripts.getOrderedAssembly ( Gene  gene1, Gene  gene2  )

static

Here is the call graph for this function:

static void umms.core.scripture.statistics.ConnectDisconnectedTranscripts.main ( String[]  args ) throws ParseException, IOException

static

Here is the call graph for this function:

---

The documentation for this class was generated from the following file:

• java/umms/core/scripture/statistics/ConnectDisconnectedTranscripts.java