umms.core.scripture.OrientedChromosomeTranscriptGraph Member List

This is the complete list of members for umms.core.scripture.OrientedChromosomeTranscriptGraph, including all inherited members.

addAnnotationToGraph(Annotation a)	umms.core.scripture.OrientedChromosomeTranscriptGraph
addEdge(Annotation v1, Annotation v2)	umms.core.scripture.OrientedChromosomeTranscriptGraph
addEdge(Annotation v1, Annotation v2, boolean augmentCount)	umms.core.scripture.OrientedChromosomeTranscriptGraph
addVertex(Annotation v)	umms.core.scripture.OrientedChromosomeTranscriptGraph
connectVertexToGraph(Annotation v)	umms.core.scripture.OrientedChromosomeTranscriptGraph
getNodePair(TranscriptGraphEdge edge)	umms.core.scripture.OrientedChromosomeTranscriptGraph
getOrphanPaths()	umms.core.scripture.OrientedChromosomeTranscriptGraph
getOrphanVertices()	umms.core.scripture.OrientedChromosomeTranscriptGraph
getPaths()	umms.core.scripture.OrientedChromosomeTranscriptGraph
getSinkVertices()	umms.core.scripture.OrientedChromosomeTranscriptGraph
getSourceVertices()	umms.core.scripture.OrientedChromosomeTranscriptGraph
OrientedChromosomeTranscriptGraph(EdgeFactory< Annotation, TranscriptGraphEdge > edgeFactory)	umms.core.scripture.OrientedChromosomeTranscriptGraph	protected
OrientedChromosomeTranscriptGraph(String name, String orientation)	umms.core.scripture.OrientedChromosomeTranscriptGraph
pathToGene(GraphPath< Annotation, TranscriptGraphEdge > gp)	umms.core.scripture.OrientedChromosomeTranscriptGraph	static
writeGraph(String save, Alignments region, boolean setUpShortExonLabels, String graphName)	umms.core.scripture.OrientedChromosomeTranscriptGraph