Inheritance diagram for umms.core.model.score.StartInWindowCountScore:

Collaboration diagram for umms.core.model.score.StartInWindowCountScore:

Public Member Functions
	StartInWindowCountScore (Annotation t)

	StartInWindowCountScore (AlignmentModel model, Annotation annotation)

double	getScore ()

double	getCount ()

int	compareTo (StartInWindowCountScore o)

void	setCount (double count)

Public Member Functions inherited from umms.core.model.score.WindowScore.AbstractWindowScore
	AbstractWindowScore (Annotation t)

Annotation	getAnnotation ()

Additional Inherited Members
Protected Attributes inherited from umms.core.model.score.WindowScore.AbstractWindowScore
Annotation	annotation

Constructor & Destructor Documentation

umms.core.model.score.StartInWindowCountScore.StartInWindowCountScore ( Annotation t )

umms.core.model.score.StartInWindowCountScore.StartInWindowCountScore	(	AlignmentModel	model,
		Annotation	annotation
	)

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Member Function Documentation

int umms.core.model.score.StartInWindowCountScore.compareTo ( StartInWindowCountScore o )

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double umms.core.model.score.StartInWindowCountScore.getCount ( )

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double umms.core.model.score.StartInWindowCountScore.getScore ( )

Returns the number of reads overlapping this region

Returns: number of reds overlapping this window Returns the "score" as defined by each subclass (e.g. count, ratio, sum of annotation scores, etc.)

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void umms.core.model.score.StartInWindowCountScore.setCount ( double count )

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The documentation for this class was generated from the following file: