This is the complete list of members for umms.core.model.score.PoissonEnrichmentScore, including all inherited members.

AbstractWindowScore(Annotation t)	umms.core.model.score.WindowScore.AbstractWindowScore
annotation	umms.core.model.score.WindowScore.AbstractWindowScore	protected
asRPKM(double count, double total, int windowSize)	umms.core.model.score.CountScore	static
calculatePVal(double a, double b, double lambdaSample, double lambdaCtrl, double w)	umms.core.model.score.PoissonEnrichmentScore
compareTo(CountScore o)	umms.core.model.score.CountScore
CountScore(Annotation a)	umms.core.model.score.CountScore
CountScore(CountScore other)	umms.core.model.score.CountScore
CountScore(CountScore other, Annotation newAnnotation, double newCount)	umms.core.model.score.CountScore
CountScore(AnnotationCollection<?extends Annotation > model, Annotation annotation)	umms.core.model.score.CountScore
CountScore(AnnotationCollection<?extends Annotation > model, Annotation annotation, double regionTotal)	umms.core.model.score.CountScore
CountScore(AnnotationCollection<?extends Annotation > model, Annotation annotation, boolean fullyContained)	umms.core.model.score.CountScore
CountScore(AnnotationCollection<?extends Annotation > model, Annotation annotation, double regionTotal, boolean fullyContained)	umms.core.model.score.CountScore
CountScore(Annotation annotation, double count, double regionTotal, double total)	umms.core.model.score.CountScore
DEFAULT_REGION_TOTAL	umms.core.model.score.PoissonEnrichmentScore	static
equals(Object o)	umms.core.model.score.CountScore
getAnnotation()	umms.core.model.score.WindowScore.AbstractWindowScore
getAverageCoverage(AlignmentModel data, CoordinateSpace coordSpace)	umms.core.model.score.PoissonEnrichmentScore
getCount()	umms.core.model.score.CountScore
getCtrlCount()	umms.core.model.score.PoissonEnrichmentScore
getCtrlLambda()	umms.core.model.score.PoissonEnrichmentScore
getCtrlRegionTotal()	umms.core.model.score.PoissonEnrichmentScore
getCtrlSampleLambda()	umms.core.model.score.PoissonEnrichmentScore
getCtrlTotal()	umms.core.model.score.PoissonEnrichmentScore
getGlobalLength()	umms.core.model.score.PoissonEnrichmentScore
getLocalSampleLambda()	umms.core.model.score.PoissonEnrichmentScore
getPvalue()	umms.core.model.score.PoissonEnrichmentScore
getRegionLength()	umms.core.model.score.PoissonEnrichmentScore
getRegionTotal()	umms.core.model.score.CountScore
getRPK()	umms.core.model.score.CountScore
getRPKM()	umms.core.model.score.CountScore
getSampleCount()	umms.core.model.score.PoissonEnrichmentScore
getSampleLambda()	umms.core.model.score.PoissonEnrichmentScore
getSampleRegionTotal()	umms.core.model.score.PoissonEnrichmentScore
getSampleTotal()	umms.core.model.score.PoissonEnrichmentScore
getScore()	umms.core.model.score.CountScore
getTotal()	umms.core.model.score.CountScore
hashCode()	umms.core.model.score.CountScore
PoissonEnrichmentScore(AlignmentModel sample, AlignmentModel ctrl, Annotation a)	umms.core.model.score.PoissonEnrichmentScore
PoissonEnrichmentScore(AlignmentModel sample, Annotation a)	umms.core.model.score.PoissonEnrichmentScore
refreshPvalue()	umms.core.model.score.CountScore
setCount(double count)	umms.core.model.score.CountScore
setCtrlCount(double d)	umms.core.model.score.PoissonEnrichmentScore
setCtrlRegionTotal(double d)	umms.core.model.score.PoissonEnrichmentScore
setCtrlTotal(double d)	umms.core.model.score.PoissonEnrichmentScore
setGlobalLength(double d)	umms.core.model.score.PoissonEnrichmentScore
setPvalue(double scanPvalue)	umms.core.model.score.PoissonEnrichmentScore
setRegionLength(double regionLength)	umms.core.model.score.PoissonEnrichmentScore
setRegionTotal(double regionTotal)	umms.core.model.score.CountScore
setSampleCount(double d)	umms.core.model.score.PoissonEnrichmentScore
setSampleRegionTotal(double d)	umms.core.model.score.PoissonEnrichmentScore
setSampleTotal(double d)	umms.core.model.score.PoissonEnrichmentScore
setTotal(double total)	umms.core.model.score.CountScore
toString()	umms.core.model.score.CountScore