umms.core.model.score.NewRatioScore Member List

This is the complete list of members for umms.core.model.score.NewRatioScore, including all inherited members.

AbstractWindowScore(Annotation t)	umms.core.model.score.WindowScore.AbstractWindowScore
annotation	umms.core.model.score.WindowScore.AbstractWindowScore	protected
asRPKM(double count, double total, int windowSize)	umms.core.model.score.CountScore	static
compareTo(CountScore o)	umms.core.model.score.CountScore
CountScore(Annotation a)	umms.core.model.score.CountScore
CountScore(CountScore other)	umms.core.model.score.CountScore
CountScore(CountScore other, Annotation newAnnotation, double newCount)	umms.core.model.score.CountScore
CountScore(AnnotationCollection<?extends Annotation > model, Annotation annotation)	umms.core.model.score.CountScore
CountScore(AnnotationCollection<?extends Annotation > model, Annotation annotation, double regionTotal)	umms.core.model.score.CountScore
CountScore(AnnotationCollection<?extends Annotation > model, Annotation annotation, boolean fullyContained)	umms.core.model.score.CountScore
CountScore(AnnotationCollection<?extends Annotation > model, Annotation annotation, double regionTotal, boolean fullyContained)	umms.core.model.score.CountScore
CountScore(Annotation annotation, double count, double regionTotal, double total)	umms.core.model.score.CountScore
DEFAULT_REGION_TOTAL	umms.core.model.score.CountScore	static
equals(Object o)	umms.core.model.score.CountScore
getAnnotation()	umms.core.model.score.WindowScore.AbstractWindowScore
getCount()	umms.core.model.score.CountScore
getDenominatorCount()	umms.core.model.score.NewRatioScore
getDenominatorRegionTotal()	umms.core.model.score.NewRatioScore
getDenominatorRPKM()	umms.core.model.score.NewRatioScore
getDenominatorTotal()	umms.core.model.score.NewRatioScore
getDepletionBinomialPValue()	umms.core.model.score.NewRatioScore
getEnrichmentBinomialPValue()	umms.core.model.score.NewRatioScore
getLog2Ratio()	umms.core.model.score.NewRatioScore
getLog2RegionRatio()	umms.core.model.score.NewRatioScore
getNumeratorCount()	umms.core.model.score.NewRatioScore
getNumeratorRegionTotal()	umms.core.model.score.NewRatioScore
getNumeratorRPKM()	umms.core.model.score.NewRatioScore
getNumeratorTotal()	umms.core.model.score.NewRatioScore
getPvalue()	umms.core.model.score.CountScore
getRatio()	umms.core.model.score.NewRatioScore
getRegionDenominatorRPKM()	umms.core.model.score.NewRatioScore
getRegionNumeratorRPKM()	umms.core.model.score.NewRatioScore
getRegionRatio()	umms.core.model.score.NewRatioScore
getRegionTotal()	umms.core.model.score.CountScore
getRPK()	umms.core.model.score.CountScore
getRPKM()	umms.core.model.score.CountScore
getScore()	umms.core.model.score.NewRatioScore
getTotal()	umms.core.model.score.CountScore
hashCode()	umms.core.model.score.CountScore
NewRatioScore(Annotation a)	umms.core.model.score.NewRatioScore
NewRatioScore(AnnotationCollection<?extends Annotation > numerator, AnnotationCollection<?extends Annotation > denominator, Annotation annotation)	umms.core.model.score.NewRatioScore
NewRatioScore(AnnotationCollection<?extends Annotation > numerator, AnnotationCollection<?extends Annotation > denominator, Annotation annotation, double numeratorRegionTotal, double denominatorRegionTotal)	umms.core.model.score.NewRatioScore
refreshPvalue()	umms.core.model.score.CountScore
RPKM_OFFSET	umms.core.model.score.NewRatioScore	static
setCount(double count)	umms.core.model.score.CountScore
setDenominatorCount(double d)	umms.core.model.score.NewRatioScore
setDenominatorRegionTotal(double d)	umms.core.model.score.NewRatioScore
setDenominatorTotal(double d)	umms.core.model.score.NewRatioScore
setNumeratorCount(double d)	umms.core.model.score.NewRatioScore
setNumeratorRegionTotal(double d)	umms.core.model.score.NewRatioScore
setNumeratorTotal(double d)	umms.core.model.score.NewRatioScore
setRegionTotal(double regionTotal)	umms.core.model.score.CountScore
setTotal(double total)	umms.core.model.score.CountScore
toString()	umms.core.model.score.NewRatioScore