| AbstractWindowScore(Annotation t) | umms.core.model.score.WindowScore.AbstractWindowScore | |
| annotation | umms.core.model.score.WindowScore.AbstractWindowScore | protected |
| asRPKM(double count, double total, int windowSize) | umms.core.model.score.CountScore | static |
| compareTo(CountScore o) | umms.core.model.score.CountScore | |
| CountScore(Annotation a) | umms.core.model.score.CountScore | |
| CountScore(CountScore other) | umms.core.model.score.CountScore | |
| CountScore(CountScore other, Annotation newAnnotation, double newCount) | umms.core.model.score.CountScore | |
| CountScore(AnnotationCollection<?extends Annotation > model, Annotation annotation) | umms.core.model.score.CountScore | |
| CountScore(AnnotationCollection<?extends Annotation > model, Annotation annotation, double regionTotal) | umms.core.model.score.CountScore | |
| CountScore(AnnotationCollection<?extends Annotation > model, Annotation annotation, boolean fullyContained) | umms.core.model.score.CountScore | |
| CountScore(AnnotationCollection<?extends Annotation > model, Annotation annotation, double regionTotal, boolean fullyContained) | umms.core.model.score.CountScore | |
| CountScore(Annotation annotation, double count, double regionTotal, double total) | umms.core.model.score.CountScore | |
| DEFAULT_REGION_TOTAL | umms.core.model.score.CountScore | static |
| equals(Object o) | umms.core.model.score.CountScore | |
| getAnnotation() | umms.core.model.score.WindowScore.AbstractWindowScore | |
| getCount() | umms.core.model.score.CountScore | |
| getPvalue() | umms.core.model.score.CountScore | |
| getRegionTotal() | umms.core.model.score.CountScore | |
| getRPK() | umms.core.model.score.CountScore | |
| getRPKM() | umms.core.model.score.CountScore | |
| getScore() | umms.core.model.score.CountScore | |
| getTotal() | umms.core.model.score.CountScore | |
| hashCode() | umms.core.model.score.CountScore | |
| refreshPvalue() | umms.core.model.score.CountScore | |
| setCount(double count) | umms.core.model.score.CountScore | |
| setRegionTotal(double regionTotal) | umms.core.model.score.CountScore | |
| setTotal(double total) | umms.core.model.score.CountScore | |
| toString() | umms.core.model.score.CountScore | |