umms.core.model.score.BasicScanStatisticScore Member List

This is the complete list of members for umms.core.model.score.BasicScanStatisticScore, including all inherited members.

AbstractWindowScore(Annotation t)	umms.core.model.score.WindowScore.AbstractWindowScore
annotation	umms.core.model.score.WindowScore.AbstractWindowScore	protected
asRPKM(double count, double total, int windowSize)	umms.core.model.score.CountScore	static
BasicScanStatisticScore(AlignmentModel model, Annotation annotation, double score, boolean global, double regionLength, double regionScore)	umms.core.model.score.BasicScanStatisticScore
BasicScanStatisticScore(AlignmentModel model, Annotation annotation, double regionTotal, double regionLength2, boolean fullyContainedReads)	umms.core.model.score.BasicScanStatisticScore
BasicScanStatisticScore(AlignmentModel model, Annotation annotation, BasicScanStatisticScore previousScore, double newScore)	umms.core.model.score.BasicScanStatisticScore
calculateGlobalPvalue(AlignmentModel model)	umms.core.model.score.BasicScanStatisticScore
calculateLocalPvalue()	umms.core.model.score.BasicScanStatisticScore
compareTo(CountScore o)	umms.core.model.score.CountScore
CountScore(Annotation a)	umms.core.model.score.CountScore
CountScore(CountScore other)	umms.core.model.score.CountScore
CountScore(CountScore other, Annotation newAnnotation, double newCount)	umms.core.model.score.CountScore
CountScore(AnnotationCollection<?extends Annotation > model, Annotation annotation)	umms.core.model.score.CountScore
CountScore(AnnotationCollection<?extends Annotation > model, Annotation annotation, double regionTotal)	umms.core.model.score.CountScore
CountScore(AnnotationCollection<?extends Annotation > model, Annotation annotation, boolean fullyContained)	umms.core.model.score.CountScore
CountScore(AnnotationCollection<?extends Annotation > model, Annotation annotation, double regionTotal, boolean fullyContained)	umms.core.model.score.CountScore
CountScore(Annotation annotation, double count, double regionTotal, double total)	umms.core.model.score.CountScore
DEFAULT_REGION_TOTAL	umms.core.model.score.CountScore	static
equals(Object o)	umms.core.model.score.BasicScanStatisticScore
getAnnotation()	umms.core.model.score.WindowScore.AbstractWindowScore
getAverageCoverage()	umms.core.model.score.BasicScanStatisticScore
getCount()	umms.core.model.score.CountScore
getFullyContainedNumberOfReads()	umms.core.model.score.BasicScanStatisticScore
getGlobalEnrichment()	umms.core.model.score.BasicScanStatisticScore
getGlobalLambda()	umms.core.model.score.BasicScanStatisticScore
getGlobalLength()	umms.core.model.score.BasicScanStatisticScore
getLocalLambda()	umms.core.model.score.BasicScanStatisticScore
getPvalue()	umms.core.model.score.BasicScanStatisticScore
getRegionLength()	umms.core.model.score.BasicScanStatisticScore
getRegionTotal()	umms.core.model.score.CountScore
getRPK()	umms.core.model.score.CountScore
getRPKM()	umms.core.model.score.CountScore
getScanPvalue()	umms.core.model.score.BasicScanStatisticScore
getScore()	umms.core.model.score.CountScore
getScores()	umms.core.model.score.BasicScanStatisticScore
getTotal()	umms.core.model.score.CountScore
getWindowLength()	umms.core.model.score.BasicScanStatisticScore
hashCode()	umms.core.model.score.CountScore
refreshPvalue()	umms.core.model.score.CountScore
setCount(double count)	umms.core.model.score.CountScore
setFullyContainedNumberOfReads(double fullyContainedNumberOfReads)	umms.core.model.score.BasicScanStatisticScore
setGlobalLength(double d)	umms.core.model.score.BasicScanStatisticScore
setPvalue(double scanPvalue)	umms.core.model.score.BasicScanStatisticScore
setRegionLength(double regionLength)	umms.core.model.score.BasicScanStatisticScore
setRegionTotal(double regionTotal)	umms.core.model.score.CountScore
setScanPvalue(double scanPvalue)	umms.core.model.score.BasicScanStatisticScore
setTotal(double total)	umms.core.model.score.CountScore
setWindowLength(double length)	umms.core.model.score.BasicScanStatisticScore
toString()	umms.core.model.score.BasicScanStatisticScore