umms.core.model.score.AbstractListScore Class Reference

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Public Member Functions
	AbstractListScore (Annotation a)
void	setScores (List< Double > scores)
double	getScore ()
double	getCount ()
double	getSum ()
double	getMedian ()
double	getMean ()
double	getStandardDeviation ()
double[]	getScores ()
String	toString ()
Public Member Functions inherited from umms.core.model.score.WindowScore.AbstractWindowScore
	AbstractWindowScore (Annotation t)
Annotation	getAnnotation ()

Static Public Attributes
static double	DEFAULT_VALUE = -1.0

Additional Inherited Members
Protected Attributes inherited from umms.core.model.score.WindowScore.AbstractWindowScore
Annotation	annotation

Constructor & Destructor Documentation

umms.core.model.score.AbstractListScore.AbstractListScore

(

Annotation

a

)

Member Function Documentation

double umms.core.model.score.AbstractListScore.getCount

(

)

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double umms.core.model.score.AbstractListScore.getMean

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double umms.core.model.score.AbstractListScore.getMedian

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)

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double umms.core.model.score.AbstractListScore.getScore

(

)

Returns the number of reads overlapping this region

Returns

number of reds overlapping this window Returns the "score" as defined by each subclass (e.g. count, ratio, sum of annotation scores, etc.)

Implements umms.core.model.score.WindowScore.

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double [] umms.core.model.score.AbstractListScore.getScores

(

)

double umms.core.model.score.AbstractListScore.getStandardDeviation

(

)

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double umms.core.model.score.AbstractListScore.getSum

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void umms.core.model.score.AbstractListScore.setScores

(

List< Double >

scores

)

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String umms.core.model.score.AbstractListScore.toString

(

)

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Member Data Documentation

double umms.core.model.score.AbstractListScore.DEFAULT_VALUE = -1.0

static

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The documentation for this class was generated from the following file:

• java/umms/core/model/score/AbstractListScore.java