umms.core.coordinatesystem.TranscriptomeSpace.GeneTree Class Reference

Collaboration diagram for umms.core.coordinatesystem.TranscriptomeSpace.GeneTree:

Public Member Functions
Collection< GeneWindow >	getRegion (Annotation region)
Collection< GeneWindow >	getRegion (String chr)
Collection< GeneWindow >	getRegion ()
long	getLength ()
long	getLength (String chr)
Annotation	getRandomAnnotation ()

Member Function Documentation

long umms.core.coordinatesystem.TranscriptomeSpace.GeneTree.getLength

(

)

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long umms.core.coordinatesystem.TranscriptomeSpace.GeneTree.getLength

(

String

chr

)

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Annotation umms.core.coordinatesystem.TranscriptomeSpace.GeneTree.getRandomAnnotation

(

)

Collection<GeneWindow> umms.core.coordinatesystem.TranscriptomeSpace.GeneTree.getRegion

(

Annotation

region

)

Returns the trimmed region contained in this interval

Parameters

chr
start
end

Returns

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Collection<GeneWindow> umms.core.coordinatesystem.TranscriptomeSpace.GeneTree.getRegion

(

String

chr

)

Returns all genes that have chr

Parameters

chr

Returns

Collection<GeneWindow> umms.core.coordinatesystem.TranscriptomeSpace.GeneTree.getRegion

(

)

Returns all genes

Returns

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The documentation for this class was generated from the following file:

• java/umms/core/coordinatesystem/TranscriptomeSpace.java