umms.core.annotation.AbstractAnnotationCollection< T extends Annotation > Member List

This is the complete list of members for umms.core.annotation.AbstractAnnotationCollection< T extends Annotation >, including all inherited members.

collapse(Annotation region, boolean fullyContained)	umms.core.annotation.AbstractAnnotationCollection< T extends Annotation >
getAverageCoverage(Annotation region)	umms.core.annotation.AbstractAnnotationCollection< T extends Annotation >
getBasesCovered(Annotation region)	umms.core.annotation.AbstractAnnotationCollection< T extends Annotation >
getCount(Annotation region)	umms.core.annotation.AbstractAnnotationCollection< T extends Annotation >
getCount(AnnotationList<?extends Annotation > set)	umms.core.annotation.AbstractAnnotationCollection< T extends Annotation >
getCount(AnnotationList<?extends Annotation > set, boolean fullyContained)	umms.core.annotation.AbstractAnnotationCollection< T extends Annotation >
getCountProcessor()	umms.core.annotation.AbstractAnnotationCollection< T extends Annotation >	protected
getOverlappingAnnotations(Annotation region)	umms.core.annotation.AbstractAnnotationCollection< T extends Annotation >
getTotalCoverage(Annotation region)	umms.core.annotation.AbstractAnnotationCollection< T extends Annotation >
scan(int windowSize, int overlap)	umms.core.annotation.AbstractAnnotationCollection< T extends Annotation >
scan(Annotation region, int windowSize, int overlap)	umms.core.annotation.AbstractAnnotationCollection< T extends Annotation >