umms.core.alignment.SmatchLike Member List

This is the complete list of members for umms.core.alignment.SmatchLike, including all inherited members.

getAllPossibleTargets(int numMismatches)	umms.core.alignment.SmatchLike
getForwardTargetRegions(int numMismatches)	umms.core.alignment.SmatchLike
getForwardTargets(int numMismatches)	umms.core.alignment.SmatchLike
getReverseTargets(int numMismatches)	umms.core.alignment.SmatchLike
main(String[] args)	umms.core.alignment.SmatchLike	static
numPossibleTargets()	umms.core.alignment.SmatchLike
SmatchLike(String kmer, List< Sequence > geneSequences, int seedNum)	umms.core.alignment.SmatchLike
SmatchLike(String kmer, String primer, int seedNum)	umms.core.alignment.SmatchLike
SmatchLike(String kmer2, Collection< Pair< String >> tailPrimers, Pair< String > subprimer1)	umms.core.alignment.SmatchLike